ID:

dvi_9285

 Coordinate:

scaffold_12928:7543113-7543263 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.5 -12.4 -12.4

Flybase annnotation

exon [dvir_GLEANR_17570:2]; CDS [Dvir\GJ17070-cds]; intron [Dvir\GJ17070-in]

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+
mature
  1. scaffold_12723:4567045-4567062 +
  2. scaffold_12822:3027795-3027812 +
  3. scaffold_12855:3257005-3257022 +
  4. scaffold_12875:4874072-4874089 +
  5. scaffold_12875:10704317-10704334 +
  6. scaffold_12875:13741568-13741585 +
  7. scaffold_12875:13759456-13759473 +
  8. scaffold_12875:20278286-20278303 +
  9. dvi_9285  scaffold_12928:7543151-7543168 +
  10. scaffold_12963:67252-67269 +
  11. scaffold_12963:759188-759205 +
  12. scaffold_12963:6549735-6549752 +
  13. scaffold_12963:9288379-9288396 +
  14. scaffold_12963:17373015-17373032 +
  15. scaffold_12970:898889-898906 +
  16. scaffold_12970:2910335-2910352 +
  17. scaffold_12970:3053383-3053400 +
  18. scaffold_12970:7796678-7796695 +
  19. scaffold_12970:10547254-10547271 +
  20. scaffold_13049:7950748-7950765 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGCAGCCATGCGCTAGTGTTGCCCACTTTTGGCAGGAAATGAAAGCCTAGCGAAAGCACAAATTTAGCAGAAGGAAACATTGCTGAAATACACACCCACACACACACACACACACACACACACACATCTACACACACATCTACACACAGTAATGTGAAGAAATATAATTAATTTGATTTGCATTGTTACCTATCCTTATAGAAAGTTCCGGCTATTGGAGCTTATGTGCGTCAAATAGCTTCTGAAACCCG
**************************************************...................(((((.((((.(((...................................................(((((.(((.....)))))))).........(((((...))))).))).)))).))).)).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060667
160_females_carcasses_total
 M047
female body
 M061
embryo
 SRR060668
160x9_males_carcasses_total
 SRR060664
9_males_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060679
140x9_testes_total
 V047
embryo
 M028
head
 SRR060665
9_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060663
160_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060671
9x160_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR1106729
mixed whole adult body
 V116
male body		 SRR060685
9xArg_0-2h_embryos_total
 V053
head
 M027
male body		 SRR060682
9x140_0-2h_embryos_total
......................................................................................................................................................................................................................TTGGAGCTTATGTGCGTCA.................. 19 0 1 5.00 5 3 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GTGCGTCAAATAGCTTCTGAAACC.. 24 0 1 4.00 4 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATTGGAGCTTATGTGCGTC................... 19 0 1 4.00 4 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATTGGAGCTTATGTGCGTCAAAT............... 23 0 1 4.00 4 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGGAGCTTATGTGCGTCAAATA.............. 22 0 1 3.00 3 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GGAGCTTATGTGCGTCAAA................ 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GTTCCGGCTATTGGAGCTTATGTGCGTC................... 28 0 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GCTTATGTGCGTCAAATAGCT........... 21 0 1 3.00 3 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGGAGCTTATGTGCGTCAAA................ 20 0 1 3.00 3 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGCGTCAAATAGCTTCTGA...... 19 0 1 3.00 3 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GTGCGTCAAATAGCTTCTGA...... 20 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATTGGAGCTTATGTGCGTCAA................. 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GGAGCTTATGTGCGTCAAATA.............. 21 0 1 2.00 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGGAGCTTATGTGCGTCAAATAGCTTCT........ 28 0 1 2.00 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GAAAGTTCCGGCTATTGGA................................ 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GGAGCTTATGTGCGTCAAAT............... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATTGGAGCTTATGTGCGTCAAATAGC............ 26 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ATGTGCGTCAAATAGCTTCTGA...... 22 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGGAGCTTATGTGCGTCAAAT............... 21 0 1 2.00 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATTGGCGCTTATGTGCGTCA.................. 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GGAGCTTATGTGCGTCAAATAGCT........... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GTCAAATAGCTTCTGAAACCCG 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GCTTATGTGCGTCAAATAG............. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AGTTCCGGCTATTGGAGCTTATGT........................ 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CCGGCTATTGGAGCTTATGT........................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATTGGAGCTTATGTGCGTCAAATA.............. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ATGTGCGTCAAATAGCTTCT........ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GTGCGTCAAATAGCTTCTGAAACCCG 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGCGTCAAATAGCTTCTGAAACC.. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTGGAGCTTATGTGCGTCAAATA.............. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GGAGCTTATGTGCGTCAAATAG............. 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGGAGCTTATGTGCGTCA.................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GTTCCGGCTATTGGAGCTTATGT........................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGGAGCTTATGTGCGTCAAATAGCT........... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGCTTATGTGCGTCAAATA.............. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TATTGGAGCTTATGTGCGTCAAATAGC............ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CTATTGGAGCTTATGTGCGTC................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................GCACAGAAAGTTCCGGCTATTG.................................. 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GGAGCTTATGTGCGTCAAATAGCTTCT........ 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGGAGCTTGTGTGCGTCAAATA.............. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AGTTCCGGCTATTGGAGCT............................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................AGCAGAAGGAAACATTGCTGATAT.................................................................................................................................................................. 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTATGTGCGTCAAATAGCTTCTGAAACC.. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GTTCCGGCTATTGGAGCTTATGTGC...................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TATGTGCGTCAAATAGCTTCTGAAACCC. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................GGCTATTGGAGCTTATGTGCGTCAAAT............... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACAGAAAGTTCCGGCTATTGGAGCTTA........................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GTGCGTCAAATAGCTTCTGAAA.... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AGTTCCGGCTATTGGAGCTTATGTGC...................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGAAAGTTCCGGCTATTGGAGCT............................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GGCAAATAGCTTCTGAAACCC. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGAAAGTTCCGGCTATTGGA................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTCCGGCTATTGGAGCTTATGTGCGTCA.................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CTTATGTGCGTCAAATAGCTTCTGAA..... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGGAGCTTATGTGCGTCAAATACC............ 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GCGTCAAATAGCTTCTGA...... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TATTGGAGCTTATGTGCGTCA.................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGTTATGTGCGTCAAATAGC............ 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GCTTATGTGCGTCAAATAGC............ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AGTTCCGGCAATTGGAGCTTATGT........................ 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CTATTGGAGCTTATGTGC...................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATTGGAGCTTATGTGCGTCA.................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GGCTATTGGAGCTTATGTGC...................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GCGTCAAATAGCTTCTGAAACCC. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CTTATGTGCGTCAAATAGC............ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ATGTGCGTCAAATAGCTTCTGAAACCC. 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CAGAAAGTTCCGGCTATTGGAG............................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AAAGTTCCGGCTATTGGA................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATTGGAGCTTATGTGCGTCAAA................ 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GGGCGTCAAATAGCTTCTGAAACC.. 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................CAGAAAGTTCCGGCTATTGGAGCTTAT.......................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGCTTATGTGCGTCAAATAGCTTCT........ 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGCGTCAAATAGCTTCTGAAACCC. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGGAGCTTATGTGCGTCAAATAGC............ 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GCTTATGTGCGTCAAATAGCTTCT........ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CCGGCTATTGGAGCTTATGTGCGTCA.................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GCTATTGGAGCTTATGTGCGTCA.................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTGGAGCTTATGTGCGTC................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GGCTATTGGAGCTTATGTGCGT.................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GTGCGTCAAATAGCTTCTGAAAC... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GAAAGTTCCGGCTATTGGAGC.............................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GTGCGTCAAATAGCTTCTGAA..... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTATGTGCGTCAAATAGCTTCT........ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TATGTGCGTCAAATAGCTTCTGAA..... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GTGAAATAGCACCTGAAACC.. 20 3 10 0.40 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................GTCAAATAGTTCCTGAAACC.. 20 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................AAATAGATTCTGAAACCGT 19 3 20 0.20 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................................TTCTATTTGCATTGTTACCTC........................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..CAGCCAAGCGTTAATGTTGC..................................................................................................................................................................................................................................... 20 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................TACACACCCACACACACA................................................................................................................................................. 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GTGAAATAGAATCTGAAACC.. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TCGTCGGTACGCGATCACAACGGGTGAAAACCGTCCTTTACTTTCGGATCGCTTTCGTGTTTAAATCGTCTTCCTTTGTAACGACTTTATGTGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGATGTGTGTGTAGATGTGTGTCATTACACTTCTTTATATTAATTAAACTAAACGTAACAATGGATAGGAATATCTTTCAAGGCCGATAACCTCGAATACACGCAGTTTATCGAAGACTTTGGGC
**************************************************...................(((((.((((.(((...................................................(((((.(((.....)))))))).........(((((...))))).))).)))).))).)).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 V053
head
...........................................TCGGATAACTTTCGTGTT.............................................................................................................................................................................................. 18 2 14 0.07 1 1 0
.......................................................CCTGTTTAAATCGGCTTCGT................................................................................................................................................................................ 20 3 16 0.06 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:7543063-7543313 + dvi_9285 AGCAGCCATG---------CGCTAGTGTTGCCC---ACTT------TTGGC----------A-------------GGAAATGAAA----------------------GC-----------------------------------------------------------------CTA-------------------GCGAA-AGCAC----------A--------A-------------------ATTTAGCAGAAGGAAACATT-------------------------------------------------------------------------GCTG--AAA--TACACAC--C------C--------------ACACACACACAC--ACACACACACACACA------------CA----TCTACACACACATCTAC--ACACAGT--------AATGTGAAG---------------------------------AAATAT------AATT-----AA----TT--TGATTTGCATTGT--------------------------TACCTATCC---------TTATAGAAAGTTCCGGCT--ATTGGAGCTTATGTGCGTCAAATAGCTTCTGAAACCCG--------------
droMoj3 scaffold_6473:7421876-7422062 + GACAGG----AAG-------------------------------------------------------------------CAAAC----------------------TC-----------------------------------------------------------------ATT-------------------GCGG-----------------------------------------------------------AAACAGCTTTTTAGCCGT-----------AA---------------------------------------------CAAGCCGC----A------CACCCA------CCC------------AAAC----ACACACACACACACACACACA------------TA----CCTATACCTGCATACAC--ACACAGAGAGATCAGC------AA--------AGTT-------A-----------GC---------------------AA----CT--TGTTTGCCATGCT--------------------------AATTTAT-----------TTATAGACAG------CA--TTTGCAGTGCCTGCGGGTC-----------------AA--------------
droGri2 scaffold_14853:9615658-9615856 - CATAATCATT--TCAGTGCTGCCAACTTTCTAGTT---TT------TCGGT-----TCAAA------------------TAA---------------------------TTCAATGAGGCATTGAGAAAAATTCAAAAAGCAAAGATAATTAAAAAGAAA------------------------------------------------TTGAATTGCA--------AATGTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT----CC--TGCTCATTTTTGT--------------------------TGTATTTCG---------TTACAGAAAGCTCCTATT--GTTGGCGCTTATGTGCGTCAAATTGCTTCTGATGGCGC--------------
droWil2 scf2_1100000004585:7860780-7860922 + AGAAAA----TGCA----------------------------------------------------------------------T----------------------GG-----------------------------------------------------------------TT------------------------------------------ATTTAAAGC-------------------ATTTAAATGGGGAAAACAT-----------------------------------------A------------------------------CACATC--ACA------------------CACA--CACACACACACACACACACAC--------A------CACACACACACAC--------------------ACAC--ATACAAACATTCCGAA------AA--------AGTG-------G-----------GCAAATGT------AA--------------------------------------------------------------------------TTTTAATTAA------CA--TT--------------------------------------------------
dp5 2:301996-302163 - GCGGAA----AA--------------------------------------------------------------------TGAAGTCTCAATGCAGTCTCTG----------------------------------------------------------ACTGTCGAATGAAA--------------------AG----------------------------------------------------AAAA----------CA------------------------GG---------------------------------------------AAGACCACACACA----------CA------CACA--CAC------ACACACACACAC--------ACACACACACACACA------CACACA----------CA--CACACACACTGA--------------CACACTGACACATGATG-------------------A-----TGGTTCAATTGATATTGAT------------------------------------------------C--------------------------------CTT----------------TT-----------------GG--------------
droPer2 scaffold_21:1474124-1474279 + TAGCAG----AAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------CT--------------------GCAGAGAGAGCA----------ATTTTAGG--------------------------CAGTTAGTAA---------------------------------------------------------------------------TACTAC----A------------------CACA--CACACACACACACACACACAC--------A------CACACACACACACACACAAA----------C--------AACCAAA--------TCAAATCAAACAACAA-----ACAAAGTA-------------G-------------AA-----AC----AACA---------------------------------------------ACAACAAAGTAGTTTTG---------------------------------C-----------------AT--------------
droAna3 scaffold_13248:3677470-3677630 + AGCGAA----CCA---------------G--AC---ACGGGTGTGGTAAATTTTTATGATGCCGCAA---------------------------------------------------------------------------------------------ACAGATGCAAAA--ATG-------------------G---------------------------------------------------CTAA-----------------------------------------------------------------------AAAGAAAATCAA----GCAAACACA----------TA------CAGA--CACCCACCCACACACACACAC--------A------CACACACACACACACACATA----------C--------AGACAGA--------TACT----TACAACCACATGGAG-------------------A------------------------------------------------------------------------------------------------------------------------------------------------A--------------
droBip1 scf7180000393717:11239-11369 + GAAAAA----ATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAC--A--------------------TACA--CACACACACACACACACATAC--------A------CACACACACACACATACACA----------C--------TTACAAA--------GCCATACAAACTAA--------------------------------------------------------------CCGATATACTATATTATAAATATGTATATGCCTGGCTGCTGATCC----------------------------------------------TC-----------------AT--------------
droKik1 scf7180000302258:209272-209404 + GCGTGT----GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------A--------C-------------------ACTCAACACCAGCAAACATCTGTTGT-------------------------------------------------------------------------GCA----------AA------CACA--TACAC----ACACACACACAC--------A------CACACACA------CA--------------CACACAC--ACACAGAGACACCAGC------AG--------GTGC-------A-----------GT-----------------------GTAGCG-----------TATTTGACTATAAA-------------------TAAA-------------------------------TT--------------------------------------------------
droFic1 scf7180000453784:216641-216813 - GAAAGG----ACCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTAGCGGGTCAAAACATCTCATTA--------------------------------------CATTT------------------------------GCA----------GG------CTGA--CACACACCCACACACCCAAAC--------A------CACACAGACACACACAGATA----------C--------AAACAGA--------TACAAAAACACAACCG-----AGAAGAAG-------------G-----CAGTAAAACTGAAATAAATTGCT-----------TTTTTGGCTTTTTA-------------------ACAA-----------------------------CTT----------------TC-----------------GG--------------
droEle1 scf7180000490214:1041339-1041534 + AGCACAA---AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATA---CACAA------------------------GCACACGCA----------TA------CACA--CAC------ACACACACACACACACACACACACACACA------------CA----CACAC----------------ACACA--------CACACACACACAACAT-----ACAAGGATCTGCATTCTGGGC-AGGAT------ACGC-----AC----ATCAGGATCTGCATTGT--------------------------TGCCGTGG---------------------TCTCGTG--GTCGGAACTTATTGTCTTCGCACGGCACATTGAAACGG--------------
droRho1 scf7180000779985:564001-564099 - AACAAA----AACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------A--------A-------------------ACT----------------------------------------------------------------------------------------GACCACTCACA----------CG------CACA--CAC------ACACAAACACAC--------ACACACCCACACACA------CACCCA----------C----AC----TCACA--------GCCATACACTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTTGAGA-----
droBia1 scf7180000298389:285034-285140 + CACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------T------CACA--CACACAC--TCACACAC------------ACACACACACACACACACACACAC----------------ACAC--ACACAGA--------GGGGAGCACACG---------------------------------CAT------ACGC-----GC----AT--TGATTTTCCCTTT--------------------------TCTTTATTT-----------------------------TT--------------------------------------------------
droTak1 scf7180000415381:115453-115540 + ACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACA--CACACACACACACACACACAC--------A------CACACACACACACACACACA----------C--------ATACTGA--------TCCCCACAAACAATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACGTTAAGGTATAT
droEug1 scf7180000409524:743405-743524 + GCACAA----AAAA---------------------------------------------------------------AGAAC-----------------------------------------------------------------------------------------CAA--------------------AC----------------------------------------------------AAAG----------CAGCACAATA-A---ATATTGAAATAAC-----------------ATTTATTT---------------------G--CAAC--------ACACA--CA------CACA--CAC--------------ACACACACACACACACACACA------------CA----CACACACACACACACAC--ACACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chrX:20368620-20368777 + AACAGCTTTC---------TCCGATTGCCATTC---GATT------TCGAT----------T-------------GGAAACCATA-----------------TAGAAAA-----------------------------------------------------------------CCAGCCAAAGAGTGAACAAA--------------------------------T-------------------ACCTAAAAAAAAAAAAAAT----------------------AAT---------------------------------------------AATAATAGGCA------------GAAAGGCACACACACACACACACACACACACACAC--------A------CACACACACA------------------------CAC--ACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 x:1368048-1368189 + AGCACTCCCC---------CGCCGACTTTCCCCTTTACAT------TCGCC-----TAAAA------------------AGC---------------------------TAAGCTCACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACA---CACAAGCACACAGGAAGAGAGACCA----GCCAGCACA------------------CACA--CACACACACACACACACACAC--------A------CACACACACACAC--------------------ACAC--ACACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_0:10712801-10712920 + TTGG-----------------------------------------------------------CCATTGTGAAAGGGAAATG-----------------------------------------------------------------------------------------TAA--------------------AC----------------------------------------------------AAAG----------CA------------------------TAAAGTTCGATTCTTCAAA-------------------------------------CACAAACACACAC--A------CACG--CTT--------------GCACTCACTCACACACACACA------------CA----CACACACACACACACAC--ACACAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:13841547-13841701 + CATTCAT---TA---TTATTACCAACTAT--TC---GCGGTTGTTTTAACC-----TGATACCCGAAACCGAAACCGAAAAC-----------------------------------------------------------------------------------------TGA---------------ACGGAAC----------------------------------------------------CCGG----------CA------------------------GG---------------------------------------------AA----GT--ACA------------------CACA--CACAC----ACACACACACACACACACACACACACACA------------CA----CACAT----------------ACACA--------TATTCACACACAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4690:335959-336107 + TTTCGG--------------------------------------------A----------T-------------GAAAAGGAAA----------------------TC-----------------------------------------------------------------AGT-------------------GGGAA-A-----TACGGGCGAA--------AATGTAGCAGTTTAGCTCTCACAAAA----------CACCGTA------------------------------------------------------AAATA-------AAGACCCCTTGCA----------CG------CACA--CACACAC----ACACACAC----------ACACACACACACACACACACACAC------------------ACACACACCGA--------T------GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AGCAGCCATG---------CGCTAGTGTTGCCC---ACTT------TTGGC----------A-------------GGAAATGAAA----------------------GC-----------------------------------------------------------------CTA-------------------GCGAA-AGCAC----------A--------A-------------------ATTTAGCAGAAGGAAACATT-------------------------------------------------------------------------GCTG--AAA--TACACAC--C------C--------------ACACACACACAC--ACACACACACACACA------------CA----TCTACACACACATCTAC--ACACAGT--------AATGTGAAG---------------------------------AAATAT------AATT-----AA----TT--TGATTTGCATTGT--------------------------TACCTATCC---------TTATAGAAAGTTCCGGCT--ATTGGAGCTTATGTGCGTCAAATAGCTTCTGAAACCCG--------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTTATGTGCGTCA................................1915.005001000000000000003000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTCAAATAGCTTCTGAAACC................2414.004010000000000000001010100000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGCTTATGTGCGTC.................................1914.004000000000000000110000000000000000000010000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGCTTATGTGCGTCAAAT.............................2314.004000000000000001101100000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCTTATGTGCGTCAAATA............................2213.003000000000000000001110000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTATGTGCGTCAAA..............................1913.003000000000000000003000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGGCT--ATTGGAGCTTATGTGCGTC.................................2813.003001200000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATGTGCGTCAAATAGCT.........................2113.003000000000000000010010000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCTTATGTGCGTCAAA..............................2013.003000000000000000001000000100000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTCAAATAGCTTCTGA....................1913.003000000000000010101000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTCAAATAGCTTCTGA....................2012.002000000000000000001100000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGCTTATGTGCGTCAA...............................2112.002000000000000000001000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTATGTGCGTCAAATA............................2112.002000000000000001010000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCTTATGTGCGTCAAATAGCTTCT......................2812.002000000000000001000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTTCCGGCT--ATTGGA..............................................1912.002002000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTATGTGCGTCAAAT.............................2012.002000000000000000002000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGCTTATGTGCGTCAAATAGC..........................2612.002000100000000000000100000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCGTCAAATAGCTTCTGA....................2212.002000000000000000001100000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCTTATGTGCGTCAAAT.............................2112.002000000000000000000100000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTATGTGCGTCAAATAGCT.........................2411.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATAGCTTCTGAAACCCG--------------2211.001000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATGTGCGTCAAATAG...........................1911.001000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCGGCT--ATTGGAGCTTATGT......................................2411.001000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCT--ATTGGAGCTTATGT......................................2011.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGCTTATGTGCGTCAAATA............................2411.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCGTCAAATAGCTTCT......................2011.001000000000000000000100000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTCAAATAGCTTCTGAAACCCG--------------2611.001010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTCAAATAGCTTCTGAAACC................2311.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTTATGTGCGTCAAATA............................2311.001000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTATGTGCGTCAAATAG...........................2211.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCTTATGTGCGTCA................................1811.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGGCT--ATTGGAGCTTATGT......................................2311.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCTTATGTGCGTCAAATAGCT.........................2511.001000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTATGTGCGTCAAATA............................1911.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--ATTGGAGCTTATGTGCGTCAAATAGC..........................2711.001000000000000000000100000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT--ATTGGAGCTTATGTGCGTC.................................2111.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTATGTGCGTCAAATAGCTTCT......................2711.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCGGCT--ATTGGAGCT...........................................1911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGTGCGTCAAATAGCTTCTGAAACC................2811.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGGCT--ATTGGAGCTTATGTGC....................................2511.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGCGTCAAATAGCTTCTGAAACCC...............2811.001000000000000000000000000000000100000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCT--ATTGGAGCTTATGTGCGTCAAAT.............................2711.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTCAAATAGCTTCTGAAA..................2211.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCGGCT--ATTGGAGCTTATGTGC....................................2611.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGTTCCGGCT--ATTGGAGCT...........................................2311.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGTTCCGGCT--ATTGGA..............................................2011.001000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGGCT--ATTGGAGCTTATGTGCGTCA................................2811.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATGTGCGTCAAATAGCTTCTGAA...................2611.001000000000000000010000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTCAAATAGCTTCTGA....................1811.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--ATTGGAGCTTATGTGCGTCA................................2111.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATGTGCGTCAAATAGC..........................2011.001000000000000001000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT--ATTGGAGCTTATGTGC....................................1811.001000000000000010000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGCTTATGTGCGTCA................................2011.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCT--ATTGGAGCTTATGTGC....................................2011.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTCAAATAGCTTCTGAAACCC...............2311.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATGTGCGTCAAATAGC..........................1911.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCGTCAAATAGCTTCTGAAACCC...............2711.001000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTCCGGCT--ATTGGA..............................................1811.001000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGCTTATGTGCGTCAAA..............................2211.001000000000000000010000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTATGTGCGTCAAATAGCTTCT......................2511.001000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTCAAATAGCTTCTGAAACCC...............2411.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCTTATGTGCGTCAAATAGC..........................2411.001000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATGTGCGTCAAATAGCTTCT......................2411.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCT--ATTGGAGCTTATGTGCGTCA................................2611.001010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT--ATTGGAGCTTATGTGCGTCA................................2311.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTTATGTGCGTC.................................1811.001010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCT--ATTGGAGCTTATGTGCGT..................................2211.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTCAAATAGCTTCTGAAAC.................2311.001000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTTCCGGCT--ATTGGAGC............................................2111.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTCAAATAGCTTCTGAA...................2111.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGTGCGTCAAATAGCTTCT......................2211.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGCGTCAAATAGCTTCTGAA...................2411.001000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TACACAC--C------C--------------ACACACACA..................................................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
GACAGG----AAG-------------------------------------------------------------------CAAAC----------------------TC-----------------------------------------------------------------ATT-------------------GCGG-----------------------------------------------------------AAACAGCTTTTTAGCCGT-----------AA---------------------------------------------CAAGCCGC----A------CACCCA------CCC------------AAAC----ACACACACACACACACACACA------------TA----CCTATACCTGCATACAC--ACACAGAGAGATCAGC------AA--------AGTT-------A-----------GC---------------------AA----CT--TGTTTGCCATGCT--------------------------AATTTAT-----------TTATAGACAG------CA--TTTGCAGTGCCTGCGGGTC-----------------AA--------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CATAATCATT--TCAGTGCTGCCAACTTTCTAGTT---TT------TCGGT-----TCAAA------------------TAA---------------------------TTCAATGAGGCATTGAGAAAAATTCAAAAAGCAAAGATAATTAAAAAGAAA------------------------------------------------TTGAATTGCA--------AATGTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT----CC--TGCTCATTTTTGT--------------------------TGTATTTCG---------TTACAGAAAGCTCCTATT--GTTGGCGCTTATGTGCGTCAAATTGCTTCTGATGGCGC--------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATT--GTTGGCGCTTATGTGCGTCA................................2511.00110
droWil2
AGAAAA----TGCA----------------------------------------------------------------------T----------------------GG-----------------------------------------------------------------TT------------------------------------------ATTTAAAGC-------------------ATTTAAATGGGGAAAACAT-----------------------------------------A------------------------------CACATC--ACA------------------CACA--CACACACACACACACACACAC--------A------CACACACACACAC--------------------ACAC--ATACAAACATTCCGAA------AA--------AGTG-------G-----------GCAAATGT------AA--------------------------------------------------------------------------TTTTAATTAA------CA--TT--------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
GCGGAA----AA--------------------------------------------------------------------TGAAGTCTCAATGCAGTCTCTG----------------------------------------------------------ACTGTCGAATGAAA--------------------AG----------------------------------------------------AAAA----------CA------------------------GG---------------------------------------------AAGACCACACACA----------CA------CACA--CAC------ACACACACACAC--------ACACACACACACACA------CACACA----------CA--CACACACACTGA--------------CACACTGACACATGATG-------------------A-----TGGTTCAATTGATATTGAT------------------------------------------------C--------------------------------CTT----------------TT-----------------GG--------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................ACACACA----------CA------CACA--CAC------ACACACACACA................................................................................................................................................................................................................................................................................27200.0510100000000
droPer2
TAGCAG----AAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------CT--------------------GCAGAGAGAGCA----------ATTTTAGG--------------------------CAGTTAGTAA---------------------------------------------------------------------------TACTAC----A------------------CACA--CACACACACACACACACACAC--------A------CACACACACACACACACAAA----------C--------AACCAAA--------TCAAATCAAACAACAA-----ACAAAGTA-------------G-------------AA-----AC----AACA---------------------------------------------ACAACAAAGTAGTTTTG---------------------------------C-----------------AT--------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AGCGAA----CCA---------------G--AC---ACGGGTGTGGTAAATTTTTATGATGCCGCAA---------------------------------------------------------------------------------------------ACAGATGCAAAA--ATG-------------------G---------------------------------------------------CTAA-----------------------------------------------------------------------AAAGAAAATCAA----GCAAACACA----------TA------CAGA--CACCCACCCACACACACACAC--------A------CACACACACACACACACATA----------C--------AGACAGA--------TACT----TACAACCACATGGAG-------------------A------------------------------------------------------------------------------------------------------------------------------------------------A--------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GAAAAA----ATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAC--A--------------------TACA--CACACACACACACACACATAC--------A------CACACACACACACATACACA----------C--------TTACAAA--------GCCATACAAACTAA--------------------------------------------------------------CCGATATACTATATTATAAATATGTATATGCCTGGCTGCTGATCC----------------------------------------------TC-----------------AT--------------SizeHit CountTotal NormTotal
No Reads
droKik1
GCGTGT----GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------A--------C-------------------ACTCAACACCAGCAAACATCTGTTGT-------------------------------------------------------------------------GCA----------AA------CACA--TACAC----ACACACACACAC--------A------CACACACA------CA--------------CACACAC--ACACAGAGACACCAGC------AG--------GTGC-------A-----------GT-----------------------GTAGCG-----------TATTTGACTATAAA-------------------TAAA-------------------------------TT--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GAAAGG----ACCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTAGCGGGTCAAAACATCTCATTA--------------------------------------CATTT------------------------------GCA----------GG------CTGA--CACACACCCACACACCCAAAC--------A------CACACAGACACACACAGATA----------C--------AAACAGA--------TACAAAAACACAACCG-----AGAAGAAG-------------G-----CAGTAAAACTGAAATAAATTGCT-----------TTTTTGGCTTTTTA-------------------ACAA-----------------------------CTT----------------TC-----------------GG--------------SizeHit CountTotal NormTotal
No Reads
droEle1
AGCACAA---AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATA---CACAA------------------------GCACACGCA----------TA------CACA--CAC------ACACACACACACACACACACACACACACA------------CA----CACAC----------------ACACA--------CACACACACACAACAT-----ACAAGGATCTGCATTCTGGGC-AGGAT------ACGC-----AC----ATCAGGATCTGCATTGT--------------------------TGCCGTGG---------------------TCTCGTG--GTCGGAACTTATTGTCTTCGCACGGCACATTGAAACGG--------------SizeHit CountTotal NormTotal
No Reads
droRho1
AACAAA----AACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------A--------A-------------------ACT----------------------------------------------------------------------------------------GACCACTCACA----------CG------CACA--CAC------ACACAAACACAC--------ACACACCCACACACA------CACCCA----------C----AC----TCACA--------GCCATACACTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTTGAGA-----SizeHit CountTotal NormTotal
No Reads
droBia1
CACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------T------CACA--CACACAC--TCACACAC------------ACACACACACACACACACACACAC----------------ACAC--ACACAGA--------GGGGAGCACACG---------------------------------CAT------ACGC-----GC----AT--TGATTTTCCCTTT--------------------------TCTTTATTT-----------------------------TT--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACA--CACACACACACACACACACAC--------A------CACACACACACACACACACA----------C--------ATACTGA--------TCCCCACAAACAATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACGTTAAGGTATATSizeHit CountTotal NormTotal
No Reads
droEug1
GCACAA----AAAA---------------------------------------------------------------AGAAC-----------------------------------------------------------------------------------------CAA--------------------AC----------------------------------------------------AAAG----------CAGCACAATA-A---ATATTGAAATAAC-----------------ATTTATTT---------------------G--CAAC--------ACACA--CA------CACA--CAC--------------ACACACACACACACACACACA------------CA----CACACACACACACACAC--ACACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AACAGCTTTC---------TCCGATTGCCATTC---GATT------TCGAT----------T-------------GGAAACCATA-----------------TAGAAAA-----------------------------------------------------------------CCAGCCAAAGAGTGAACAAA--------------------------------T-------------------ACCTAAAAAAAAAAAAAAT----------------------AAT---------------------------------------------AATAATAGGCA------------GAAAGGCACACACACACACACACACACACACACAC--------A------CACACACACA------------------------CAC--ACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................AAAGGCACACACACACACACACACACACACACAC--------A------................................................................................................................................................................................................................................................................3515.0050000000000000000000000000000000000000000000000000000000003110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TA-----------------TAGAAAA-----------------------------------------------------------------CCAGCCAAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................AAGGCACACACACACACACACACACACACACAC--------A------C...............................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................GAAAGGCACACACACACACA..............................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................A--------------------------------T-------------------ACCTAAAAAAAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................AAAGGCACACACACACACACAC...........................................................................................................................................................................................................................................................................................2240.2510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................AAAAAAAAAAAAAAT----------------------AAT---------------------------------------------AA.......................................................................................................................................................................................................................................................................................................................................20200.1530000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CACAC--------A------CACACACACA------------------------CAC--AC.......................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................CTAAAAAAAAAAAAAAT----------------------AA.......................................................................................................................................................................................................................................................................................................................................................................................19140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................AAAAAAAAAAAAAAT----------------------AAT---------------------------------------------A........................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................CACACACACACACACACACAC--------A------CACAC...........................................................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CACACACACACACACACACACACACACAC--------A------CACAC...........................................................................................................................................................................................................................................................35200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................ACACACACACAC--------A------CACACACACA------------------------CA............................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................ACCTAAAAAAAAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................ACACACACAC--------A------CACACACACA------------------------CAC--A........................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................CACACACACACACACACACA..................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................ACACACAC--------A------CACACACACA------------------------CAC--.........................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................CACACACACACACACACACACACA..................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGCACTCCCC---------CGCCGACTTTCCCCTTTACAT------TCGCC-----TAAAA------------------AGC---------------------------TAAGCTCACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACA---CACAAGCACACAGGAAGAGAGACCA----GCCAGCACA------------------CACA--CACACACACACACACACACAC--------A------CACACACACACAC--------------------ACAC--ACACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................CACA------------------CACA--CACACACACACACAC.....................................................................................................................................................................................................................................................................................23200.05100000001000000000
droSec2
TTGG-----------------------------------------------------------CCATTGTGAAAGGGAAATG-----------------------------------------------------------------------------------------TAA--------------------AC----------------------------------------------------AAAG----------CA------------------------TAAAGTTCGATTCTTCAAA-------------------------------------CACAAACACACAC--A------CACG--CTT--------------GCACTCACTCACACACACACA------------CA----CACACACACACACACAC--ACACAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CATTCAT---TA---TTATTACCAACTAT--TC---GCGGTTGTTTTAACC-----TGATACCCGAAACCGAAACCGAAAAC-----------------------------------------------------------------------------------------TGA---------------ACGGAAC----------------------------------------------------CCGG----------CA------------------------GG---------------------------------------------AA----GT--ACA------------------CACA--CACAC----ACACACACACACACACACACACACACACA------------CA----CACAT----------------ACACA--------TATTCACACACAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................CACACACACACACACACACA------------CA----C...........................................................................................................................................................................................................................................23200.05101000000000
droEre2
TTTCGG--------------------------------------------A----------T-------------GAAAAGGAAA----------------------TC-----------------------------------------------------------------AGT-------------------GGGAA-A-----TACGGGCGAA--------AATGTAGCAGTTTAGCTCTCACAAAA----------CACCGTA------------------------------------------------------AAATA-------AAGACCCCTTGCA----------CG------CACA--CACACAC----ACACACAC----------ACACACACACACACACACACACAC------------------ACACACACCGA--------T------GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 10:04 PM