ID:

dvi_9279

 Coordinate:

scaffold_12928:7494364-7494514 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.1 -29.1 -28.9

Flybase annnotation

exon [dvir_GLEANR_17565:2]; CDS [Dvir\GJ17064-cds]; intron [Dvir\GJ17064-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_12472:660547-660567 +
  2. scaffold_12875:612209-612229 +
  3. scaffold_12875:8447978-8447998 +
  4. scaffold_12875:12924798-12924818 +
  5. scaffold_12928:3493478-3493498 +
  6. scaffold_12928:5624588-5624608 +
  7. scaffold_12928:6343463-6343483 +
  8. dvi_9279  scaffold_12928:7494440-7494460 +
  9. scaffold_12932:914345-914365 +
  10. scaffold_12963:3955931-3955951 +
  11. scaffold_12963:7994001-7994021 +
  12. scaffold_12963:11027162-11027182 +
  13. scaffold_12970:10422803-10422823 +
  14. scaffold_12970:11763648-11763668 +
  15. scaffold_13042:4127005-4127025 +
  16. scaffold_13047:3286382-3286402 +
  17. scaffold_13047:4495083-4495103 +
  18. scaffold_13047:17779961-17779981 +
  19. scaffold_13049:3368047-3368067 +
  20. scaffold_13049:10404244-10404264 +
  21. scaffold_12723:1989173-1989193 -
  22. scaffold_12726:605675-605695 -
  23. scaffold_12726:747929-747949 -
  24. scaffold_12822:3291623-3291643 -
  25. scaffold_12823:1690366-1690386 -
  26. scaffold_12875:11151758-11151778 -
  27. scaffold_12928:2531729-2531749 -
  28. dvi_10109  scaffold_12963:2146065-2146085 -
  29. scaffold_12963:9019812-9019832 -
  30. scaffold_12970:7712822-7712842 -
  31. scaffold_13042:1373302-1373322 -
  32. scaffold_13047:4145895-4145915 -
  33. scaffold_13047:14774777-14774797 -
  34. scaffold_13047:17947906-17947926 -
  35. scaffold_13049:1146286-1146306 -
  36. scaffold_13049:5199124-5199144 -
  37. scaffold_13049:7994867-7994887 -
  38. scaffold_13049:19171894-19171914 -
  39. scaffold_13049:21188167-21188187 -
  40. scaffold_13246:1362710-1362730 -
  41. scaffold_10324:892022-892042 +
  42. scaffold_12723:2782338-2782358 +
  43. scaffold_12855:1628906-1628926 +
  44. scaffold_12855:4475204-4475224 +
  45. scaffold_12855:9816864-9816884 +
  46. scaffold_12928:885330-885350 +
  47. scaffold_12928:2021761-2021781 +
  48. scaffold_12928:4802498-4802518 +
  49. scaffold_12932:435209-435229 +
  50. scaffold_13042:1997528-1997548 +
  51. scaffold_13047:3633964-3633984 +
  52. scaffold_13047:4010787-4010807 +
  53. scaffold_13047:10391120-10391140 +
  54. scaffold_13049:3380200-3380220 +
  55. scaffold_13049:11023836-11023856 +
  56. scaffold_13049:12987814-12987834 +
  57. scaffold_13246:2262384-2262404 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGCCTTTTCATTTTTTTTGTATTTATCTTTGCCCAAACCTCCCACCCCCCCACTCCCCCTTACCATTGCTTCTTGCCACCGCATGCTTTCTTCCATAAACTTAACTTGCAAAAATATGAAATTGTGTATGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGGGTGGTAACTGTGTTTAACTAATGCTATGAAGGTCGGCACTGGCACCCTACAGGAAACCATTGGCCTCGGTTTTCGGGAGGA
**************************************************(((......(((((((.....((.((((((((((((.......((((.((...((.((((...((((........))))...)))).))..)).)))).....))))))).))).)).)))))))))..)))...................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 SRR060657
140_testes_total
 V053
head
 SRR060678
9x140_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 M047
female body
 SRR060661
160x9_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 V047
embryo
 V116
male body
...................................................................................................................................................................................................ATGAAGGACGGGACTAGCACC................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TATGTGTGCGTGTGTGTGTGT........................................................................................................ 21 0 20 0.25 5 0 5 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGTGTATGTGTGCGTGTGTGTG........................................................................................................... 22 0 20 0.15 3 0 0 0 2 0 0 0 0 0 0 0 1
.................................................CCAGTCCCCGTTACCATTAC...................................................................................................................................................................................... 20 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GTGTGTGTGTGTGTGTGTGTG........................................................................................... 21 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................CTATGAAGGACGGGACTA........................................ 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................TGCGTGTGTGTGTGTGTGTG................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................GTATGTGTGCGTGTGTGTG........................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................GTATGTGTGCGTGTGTGT............................................................................................................ 18 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................TGTGTATGTGTGCGTGTGTG............................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................CTATGAAGGACGGAACTA........................................ 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................TATGTGTGCGTGTGTGTGT.......................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

ACGGAAAAGTAAAAAAAACATAAATAGAAACGGGTTTGGAGGGTGGGGGGGTGAGGGGGAATGGTAACGAAGAACGGTGGCGTACGAAAGAAGGTATTTGAATTGAACGTTTTTATACTTTAACACATACACACGCACACACACACACACACACACACACACACACGACCCACCATTGACACAAATTGATTACGATACTTCCAGCCGTGACCGTGGGATGTCCTTTGGTAACCGGAGCCAAAAGCCCTCCT
**************************************************(((......(((((((.....((.((((((((((((.......((((.((...((.((((...((((........))))...)))).))..)).)))).....))))))).))).)).)))))))))..)))...................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 V047
embryo
 M047
female body
 SRR060663
160_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 SRR060676
9xArg_ovaries_total
 M027
male body		 SRR060664
9_males_carcasses_total
...................................TTGGAGGGTGGGGGGGTT...................................................................................................................................................................................................... 18 1 2 0.50 1 1 0 0 0 0 0 0 0
........................................................GGGAATAGTGACGTAGAACGG.............................................................................................................................................................................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0
............................................GGGGGCCTCAGGGGGAATGG........................................................................................................................................................................................... 20 3 3 0.33 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................CTTCCGTAACTGGAGCCAAA......... 20 3 3 0.33 1 1 0 0 0 0 0 0 0
.......................................................GGGGAATGGAAACGCGGAAC................................................................................................................................................................................ 20 3 7 0.14 1 0 0 0 1 0 0 0 0
....................................TGGAGGGTCGGGCGGTGA..................................................................................................................................................................................................... 18 2 8 0.13 1 0 1 0 0 0 0 0 0
.................................ATTTGGAGGGTGGGTGGGT....................................................................................................................................................................................................... 19 2 9 0.11 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................TGAATACCATACTTCCTG............................................... 18 3 20 0.10 2 0 2 0 0 0 0 0 0
......................................TAGGGTGGGGTTGTGAGGGGG................................................................................................................................................................................................ 21 3 10 0.10 1 0 0 1 0 0 0 0 0
.......................................GGGGTGGGGGGGTGAGGGGG................................................................................................................................................................................................ 20 1 11 0.09 1 1 0 0 0 0 0 0 0
...................................TTGGAGGGTGGGTGGGTG...................................................................................................................................................................................................... 18 1 12 0.08 1 0 0 1 0 0 0 0 0
.........................................................................................................................AACACATACACCCGCACACAC............................................................................................................. 21 1 17 0.06 1 0 0 0 0 0 1 0 0
......................................TAGGGTGGGGTTGTGAGGGG................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 1 0 0 0 0 0
.......................................................................................................TCAACGTTTCTATACTTT.................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 1 0
...................................CTGGAGGGAGGGGGGGTG...................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:7494314-7494564 + dvi_9279 TGCCTTTTC---ATT---TTTTTTGTATT----T-------------------------------------------------ATCTTTGCCCAAACCTC--------------CCACCCC--------------------------------------------------------------------------------------------------------------------------------------CCCACTCCCCCTTACCATTGCTTCTT--GC-CACCGCATGCTTTCTTCC----------ATAAACT-----------------------------TAACTTG-------------------C---------------AAA-----------------------------------------------------------------------------------AATATGA--------------------------------------------------------A-----------------------------------------------------------AT--------TGT--------------GTA----TGTGTGCGTGTGTGTGTGTGTG----------TGTGTGTGTGTGTGTG--------C------------------------------TGGGTGGTAACTGTG------------------------------TTT-----AACTAATGCTATGAAGGTCGGCACTGGCACCCTACAGGAAACCATTGGCCTCGGTTTTCGGGAGGA-
droMoj3 scaffold_6473:2539240-2539572 - dmo_639 TGTCTTTTC---CTTTTGATTATCGTATT----TATCTTGGTCTGTTCTCTGC------------------------------------CTTTACTTCTGTTGCTTCAACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCATGCTTTTTTCC----------TTAAACT-----------------------------TAACTTG-------------------C---------------GAA--------------------------------------------------------------AAAAAAA----AAAAAATACAAAACAAA-------------------------------------------ATTTGCTCAATGAATGTGCGTG--TGTGTGCGTGCGT-------------------------------GTGTGTGT--------ATATG---------C-CTA----TGTG--TGTG--------CGTGTATG------TGTGTGTGTGTGTGTGTCTGTGTATGTGTATGTGCCTCTGTCTATGTGTGTGTATTGGGTGGTTACCGTG------------------------------TTT-----AACTAATACTATGAAGGTCGGCACTGGCACCCTACAGGAAACAATTGGTCTTGGTTTCCGGGAGGA-
droGri2 scaffold_14853:9658121-9658399 - TCCTTTTTC---ATT---TGT-----GTT----TATCTTCCTGTGCTCTGTGC---------------------------------------------TCTGCGC---------CTACACCAA-----------------------------------------------------------CACATC----------------------------------------------------------------------------------CATTGCTTCTCCGGCAAACCGCATGCTTCCCC-CACCCCCCGCCTTAAACT-----------------------------TAACTTG-------------------C---------------TAAAAATGTC---TA---------------------------------------------------------------------------TGG--------------------------------------------------------A-----------------------------------------------------------ATTCTATGTGTG----------------------TGTGTGTGTGTGT--------G--TGTG----TGTGTGTGTGTGTGTG--------TGTG---GTG-------------GTGTGTATTGGGTGGTCAATGTG------------------------------TTT-----AACTAATGCTATGAAGGTCGGCACTGGCACCCTACAGGAAACCATTGGTCTCGGTTTTCGAGAGGA-
droWil2 scf2_1100000004515:1179580-1179824 - TGCTCTTTA---ACT---TTATTTGGTTTTTGC--------CATCCCC---------------------------------------GTTACCATTCCTTTTCTTCCTGCCT-------------------------TTTTGCATG-----------ACCCTCT-------------------------------------------------GCT---------------------------ATATCG-------------------------------------------------------------------------------------------CTCTACA-----------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------A-----------------------------------------------------------ATTCTATATATGT--------------GT-CTCTT--GTGTGTG--------TGTG----------TGTGTGTGTGTGTGTA--------C------------------------------GTGTGTGCTTAT---------------TGTTGGTTGGTTACTTGGTGTCACAAAACTAATACTCTGAAGGTCGGCACTGGCACCCTACAGGAAACAATTGGTCTGGGATTTCGCGAAGA-
dp5 XL_group1a:6803531-6803827 - TCGTTTCTG---TGT---GCT-TTGT-------------------------CGTATGCTAACCAACACACA------ATGCCACACATCCCAACCACT---CCAC---------CGATCCACC--------T----GAATTGCATGCATATAACCTACCCCCCACCCCCATCCCCACCCC----------------------------------------------------------------------------------------------------------------------------------------CACCCACACCCACATCCACACCATCACCACAAAAACTATCTAT-----------------------CGCTCTCTTG----------AAC-------------------------------------------------GAAACG-------------AAACAAAACCAA-------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------T----------TGTGTGTGTGTGTGTA--------C------------------------------TGGCTGGTTTTTGTGG-----------------------------TTG-----AACTAATGCTCTGAAGGTCGGCACTGGCACCCTACAGGAAACGATTGGCCTTGGCTTTCGGGAGGA-
droPer2 scaffold_25:506241-506532 + TTCTGTGTG---CTT---TGTCGTATGCT----A--------------------------ACCAACACCCA------ATGCCACACATCCCACCCACT---CCAC---------CGATCCACC--------T----GAATTGCATGCATATACCCTACCCCCCACCCA----------------------------------------------------------------------------------------------------------------------------------------------------CACCCACACCCACATCCACACCATCACCACAAAAACTATCTAT-----------------------CGCTGTCTTG----------AAC-------------------------------------------------GAAACGAAAACCTTAAACGAAACAAAACCAA-------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------ATTGTGTGTGTGTGTA--------C------------------------------TGGCTGGTTTTTGTGG-----------------------------TTG-----AACTAATGCTCTGAAGGTCGGCACTGGCACCCTACAGGAAACGATTGGCCTTGGCTTTCGGGAGGA-
droAna3 scaffold_12929:1805298-1805516 - TTCTTTTTT---GCT---TTCTT-CCATT--------TCTCTTTGTTCTCTAT------------------------------------TTCTATTTCTCTTTCTTCTCCCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTCCTTTTTTTT----------TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGTT--TCTGTGCGTGTGC-------------------------------GTGCGTGT--------GC--------------GTG----TG------------------CG----------TGCGTGTGCGTGTGTG--------T------------------------------GTGTGTGTGTGTGTGTGTGTCGTGTGCTGTGCA---------------------------------TGTTCGTGCTTGTTTGTTTTGTTGTGTGCTTTTGTGCTTTTCTTTTTGCAGAT-
droBip1 scf7180000395970:94579-94859 - TCGATTCCG---TTT---CCGAATTTTTT----G----------------------GCTTCTCCAAACTCG------ACTCC-----------------------CC----------------CCTTTCCAACATCCTTTTGCATGCTTCT----GCACCCCC-----------------------------------------------------CCAATTTCCATACCCCATACCCC----------------------------------------------------------ACCCTCC----------TTAA---------------------------------ATCCC-------------------------------------------------CACGGAAATCAATCAAAAAAAAAA-----------------------------------------------------------------------AACTATCGCTCTGACAA------AACGA-------------A-----------------------------------------------------------AT----------------------ACTCGA----TA----------------------------------TGTGTGTGTGTA--------C------------------------------TGGCTGGTTTATGTGG---------------------TTATG---TGG-----AACTAATGCTCTGAAGGTCGGCACTGGCACCCTACAGGAAACAATCGGTCTCGGCTTTCGGGAGGA-
droKik1 scf7180000302621:458318-458570 - TCTGTTTCT---GTT---CTCGCT---------------------------------------------------------------------------------CC----------------CATAACCCATAAC-CCGTGCATGCTTCT----TGGCCCTCA-----------------------------------------------------------------------------------------------------------------------------TCCATGCCTAATCCC----------ACCACCT-----------------------------AATCCTG---------------------------------------------ATC-------------------------------------------------GAAAAA-------------AAAAAAAACGAA-------------------------------------------AA---------------CCGTACTAA------ACTTGACACAACTAACAA------------------AC------------------CGAAAAACTACTCGA-------------------------------------AAATGTGTGTGTGTA--------T------------------------------TGGCTGGTTTATGTGG-----------------------------TTG-----AACTAATGCTCTGAAGGTCGGCACTGGCACCCTACAGGAAACGATTGGCCTTGGCTTCCGGGAGGA-
droFic1 scf7180000454038:558724-558894 - TTTCTTCTT---CTT---CTT-CTGCTTG----C-------------------------------------------------ACCACCACCCACAATCT-------------CCCACCCCAATCTCCAT---------C-------------------------------------------------------------------------------------------------------CCCCAACT---------------------------------------------------------------------------------------------------AGTATTTATTGCGAATGACTTGGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAGTTTAGTATTTAG----------------CT--------------GC-AAATG--GGGCGTGTGT----GTAAG----------TGTGTGTGTGTGTGTA--------T------------------------------TTGCTCA-----------------------------------------------------GCTC----------------------------------------------CAACAATATT
droEle1 scf7180000491011:1002433-1002647 + TGTTTTTCT---TTT---TTTTTTGTGCT----T----------------------TCTT-----------------------------TTCTATTTCTCTCTTTTTT----------------CTCTTTGTGATTACTCCCCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCTGAATCCTTTGTGTCCAATTTTTTTTT-------------------------------------------------------------------------------------------------------------------------CTTGTGCGTTGCATG--------------------------------------------------------------------------------------------------------------TT--GCGTGTGCGT----GTGTG----------TGTGTGTGTGTGTGTG--------T------------------------------TTGGTGT-----------------------------------------------------GCTTTTCTTTTTGCAGATGGAATTTTAAAGCTTAAAAGTAGGAAAAGGTCGGAGGAAAA-
droRho1 scf7180000762169:2354-2562 - CGTTACC-GTTCAAC---TTTCTCGCAATTTTC--------CATGCCG---------------------------------------TTGCCCAGAGCTCTTGGCCGCGTCCTTCGACCTC------------------------------------CTTCACT-------------------------------------------------CCT---------------------------CTCCAGCT--------------------------TATT--GA-TATTGCAATTTAGCCAAC----------ATAAATT-----------------------------TGACAGA-----------------------------------------------------------------------------------------------------------------------------------CCAAAC---------AAGCGGTTTGGGGA-------------------------------------------------------------CTAAAGGGCGGGGTTTAA----------------GT--------------GC-CACTT--GTGT----------GTGTG----------TGTGTGTATGTGTGTG--------T------------------------------AAGGCGGC-------------------------------------------------------------------------------------------------------------AA-
droBia1 scf7180000296966:1569-1797 + TGTCCTTTC---ACT---TTCTTCGCTTA----T-------------------------------------------------ATCGCTGTTTGTTGATC-------------TCTGTCACTGCATCGAA---------T-------------------------------------------------------------------------------------------------------CTATAACTC--------------TTAGCAT--------------------------------------------------------------------------------------TGCCACTTGTATTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTG--CCAGTGTGTGACA-------------------------------GTGTTGGC--------GT--------------GTG----TT------------------GG----------TGTGTGTGTGTTGGTG--------T------------------------------GTGTGTGTTGGTGTGT-----------------------------GTG-----TGTTGGTG-TGTGTGTGTTGGTGTGTGTGTGTTGGTGTTAATTGTTGGTGTTGGTGTTAACAGTGG-
droTak1 scf7180000414745:24022-24117 + T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTA--------C------------------------------TGGCTGGTTTATGTGG-----------------------------TTG-----AACTAATGCTCTGAAGGTCGGCACTGGCACCCTACAGGAAACGATTGGCCTTGGCTTTCGGGAGGA-
droEug1 scf7180000409110:1305753-1305916 - TTGTTTTTC---ATT---CGTTTTTTTTT----T----------------------GTT---------------------------TTTTACCACCCCTCCCCTCTCC----------------ACCCTC---------T-------------------------------------------------------------------------------------------------------CGAT----------------------------------------AAAACCCTT----------------------------------------------TGGTAAAATCTGTAT---------------------------------------------------------------------------------ACTGTTTGTGTTTGTGTAAA------------------------------------------------------------------------------------------------------TGAAA-------------------------------AT------------------G---------CTCTA----TGTGTGTGTGAGT--------A--TCTGTGTGTGTGTGTGTGTGTGTG--------C------------------------------TTGTTTGT----------------------------------------------------------------------------------------------------------------
dm3 chrX:6215597-6215902 + TCGTTTCTG---TTT---TCGAC-TCTTG---------------------------------------------------CC-----------------------TC----------------CATTTCCTTAAACGCCTTGCATGCTTCT----TAACCCCCAACCACATCCTCACCTCACCTCACCTCCCCTGCCCGTGACCTGACCTAAC---CTGATCCCCA--ACGAATAAACCAAA-----------------------------------------------------T----------------------------------------------CGAAAAAA----------------------------------------------------------------------------------------------------------------------------------TCGAAAAACCAAACAA----AACTATCGCTCTGACTGCCGACTGACG--------------------------------------------------------------------------------------------------ACTCGA----TG----T--------GTGTGCG----------TGTGTGTGTGTGTGTA--------C------------------------------TGGCTGGTTTATGTGG-----------------------------TTG-----AACTAATGCTCTGAAGGTCGGCACTGGCACCCTACAGGAAACGATTGGCCTTGGCTTTCGGGAGGA-
droSim2 x:5843428-5843535 + TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTG----------TGTGTGTGTGTGTGTA--------C------------------------------TGGCTGGTTTATGTGG-----------------------------TTG-----AACTAATGCTCTGAAGGTCGGCACTGGCACCCTACAGGAAACGATTGGCCTTGGATTTCGGGAGGA-
droSec2 scaffold_4:552257-552578 - dse_1269 TCGTTTCTG---TTT---TCT---GCCTC----C------------------------------------GACTCTTG--CC-----------------------TC----------------CATTTCCTTAAACGCCTTGCATGCTTCT----TAACCCCCAACCACATCCTCACCTCACCACACCTCACCT------GACCTGACCTATC---CTGATCCCCA--ACGAATAAACCAAATCAAA----------------------------------------AAAAAAAAT----------------------------------------------CGAAAAAA----------------------------------------------------------------------------------------------------------------------------------TCGAAAAACCAAACCAAACAAACTATCGCTCTGACTGCCGACTGACG--------------------------------------------------------------------------------------------------ACTCGA----TG--------------TGTGTG----------TGTGTGTGTGTGTGTA--------C------------------------------TGGCTGGTTTATGTGG-----------------------------TTG-----AACTAATGCTCTGAAGGTCGGCACTGGCACCCTACAGGAAACGATTGGCCTTGGATTTCGGGAGGA-
droYak3 X:19076988-19077274 - CCACCCATC---AAC---CTT--------------------------------------------------------GTGCCCACCACCCCCAAGAAT---CCGC---------CCACCCTAA-----------------------------------------------------------CGTACCGCTATTTCCT--TCGTTGCCTTTTG---CCAATTCGCATTTCGTATACGCCATG---------------------------------------------------------------------------------------------------TCGCCAATTTC-----------------------------------------------------TGCGAATTTTCGCCAAAAAGCACAAATTTGTTATGCGATTGTCTT--------------------------------------------------------------------------------------------------TGTAAG------AGTGCGCGTGTATTGGTA------------------AT------------------G---------GTAAT----GGTGTGTG----------TAAG----------TGTGTGTGTGTGTGTATCTGTG--T------------------------------GAGTT------T---------------CGTTTGTG--TCG-----CTG-----ACTGTG--TGCTTAATGCGCCAACGAGCACCGCACACGAAAC-------------------------
droEre2 scaffold_4845:6775907-6776077 - TGTATTTTA---GTG---CTTTTTTTTTT----A----------------------ATA-------------------------TTTTTAT-----------------------------------CGAA---------A-------------------------------------------------------------------------------------------------------CCCCACCACTTACACAACTCCACTCGCG----------------------------------------------------------------------------------GTGT---------------------------------------------------------------------------------GCTTTTTGCG--------------------------------------------------------------------------------------------------------TG------TGTGCGTGCGT-------TTCACCTTTTCTCTTTT---CCGTGT--------CTA-----------TGCG-----------AACGCGT--GTGTGTG----------TGTGTGTGTGTGTGTG--------T------------------------------GGAATGGTATCTGTGT--------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGCCTTTTC---ATT---TTTTTTGTATT----T-------------------------------------------------ATCTTTGCCCAAACCTC--------------CCACCCC--------------------------------------------------------------------------------------------------------------------------------------CCCACTCCCCCTTACCATTGCTTCTT--GC-CACCGCATGCTTTCTTCC----------ATAAACT-----------------------------TAACTTG-------------------C---------------AAA-----------------------------------------------------------------------------------AATATGA--------------------------------------------------------A-----------------------------------------------------------AT--------TGT--------------GTA----TGTGTGCGTGTGTGTGTGTGTG----------TGTGTGTGTGTGTGTG--------C------------------------------TGGGTGGTAACTGTG------------------------------TTT-----AACTAATGCTATGAAGGTCGGCACTGGCACCCTACAGGAAACCATTGGCCTCGGTTTTCGGGAGGA-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----TGTGTGCGTGTGTGTGTGT............................................................................................................................................................................................21200.255000000050000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--------------GTA----TGTGTGCGTGTGTGTG...............................................................................................................................................................................................22200.153000000000000000000000000000020000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTG----------TGTGTGTGTG.....................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTGTGTGTGTGTGTG----------TG.............................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA----TGTGTGCGTGTGTGTG...............................................................................................................................................................................................19200.051000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA----TGTGTGCGTGTGTGT................................................................................................................................................................................................18200.051000000000001000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--------------GTA----TGTGTGCGTGTGTG.................................................................................................................................................................................................20200.051000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----TGTGTGCGTGTGTGTGT..............................................................................................................................................................................................19200.051000000000000000000000000000000000010000000000000000000000000000
droMoj3
TGTCTTTTC---CTTTTGATTATCGTATT----TATCTTGGTCTGTTCTCTGC------------------------------------CTTTACTTCTGTTGCTTCAACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCATGCTTTTTTCC----------TTAAACT-----------------------------TAACTTG-------------------C---------------GAA--------------------------------------------------------------AAAAAAA----AAAAAATACAAAACAAA-------------------------------------------ATTTGCTCAATGAATGTGCGTG--TGTGTGCGTGCGT-------------------------------GTGTGTGT--------ATATG---------C-CTA----TGTG--TGTG--------CGTGTATG------TGTGTGTGTGTGTGTGTCTGTGTATGTGTATGTGCCTCTGTCTATGTGTGTGTATTGGGTGGTTACCGTG------------------------------TTT-----AACTAATACTATGAAGGTCGGCACTGGCACCCTACAGGAAACAATTGGTCTTGGTTTCCGGGAGGA-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTG--TGTGTGCGTGCG......................................................................................................................................................................................................................................................................................19200.051000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTCTGTGTATG.....................................................................................................................................................18200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------TGTGTGTGTGTGTGTGTC.............................................................................................................................................................19200.051000001
droGri2
TCCTTTTTC---ATT---TGT-----GTT----TATCTTCCTGTGCTCTGTGC---------------------------------------------TCTGCGC---------CTACACCAA-----------------------------------------------------------CACATC----------------------------------------------------------------------------------CATTGCTTCTCCGGCAAACCGCATGCTTCCCC-CACCCCCCGCCTTAAACT-----------------------------TAACTTG-------------------C---------------TAAAAATGTC---TA---------------------------------------------------------------------------TGG--------------------------------------------------------A-----------------------------------------------------------ATTCTATGTGTG----------------------TGTGTGTGTGTGT--------G--TGTG----TGTGTGTGTGTGTGTG--------TGTG---GTG-------------GTGTGTATTGGGTGGTCAATGTG------------------------------TTT-----AACTAATGCTATGAAGGTCGGCACTGGCACCCTACAGGAAACCATTGGTCTCGGTTTTCGAGAGGA-SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGTGTG--------TGT....................................................................................................................................................19200.10202
droWil2
TGCTCTTTA---ACT---TTATTTGGTTTTTGC--------CATCCCC---------------------------------------GTTACCATTCCTTTTCTTCCTGCCT-------------------------TTTTGCATG-----------ACCCTCT-------------------------------------------------GCT---------------------------ATATCG-------------------------------------------------------------------------------------------CTCTACA-----------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------A-----------------------------------------------------------ATTCTATATATGT--------------GT-CTCTT--GTGTGTG--------TGTG----------TGTGTGTGTGTGTGTA--------C------------------------------GTGTGTGCTTAT---------------TGTTGGTTGGTTACTTGGTGTCACAAAACTAATACTCTGAAGGTCGGCACTGGCACCCTACAGGAAACAATTGGTCTGGGATTTCGCGAAGA-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTAATACTCTGAAGGTCGGC.............................................2211.00100001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGTGTA--------C------------------------------G.......................................................................................................................18200.05100010
dp5
TCGTTTCTG---TGT---GCT-TTGT-------------------------CGTATGCTAACCAACACACA------ATGCCACACATCCCAACCACT---CCAC---------CGATCCACC--------T----GAATTGCATGCATATAACCTACCCCCCACCCCCATCCCCACCCC----------------------------------------------------------------------------------------------------------------------------------------CACCCACACCCACATCCACACCATCACCACAAAAACTATCTAT-----------------------CGCTCTCTTG----------AAC-------------------------------------------------GAAACG-------------AAACAAAACCAA-------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------T----------TGTGTGTGTGTGTGTA--------C------------------------------TGGCTGGTTTTTGTGG-----------------------------TTG-----AACTAATGCTCTGAAGGTCGGCACTGGCACCCTACAGGAAACGATTGGCCTTGGCTTTCGGGAGGA-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TTCTGTGTG---CTT---TGTCGTATGCT----A--------------------------ACCAACACCCA------ATGCCACACATCCCACCCACT---CCAC---------CGATCCACC--------T----GAATTGCATGCATATACCCTACCCCCCACCCA----------------------------------------------------------------------------------------------------------------------------------------------------CACCCACACCCACATCCACACCATCACCACAAAAACTATCTAT-----------------------CGCTGTCTTG----------AAC-------------------------------------------------GAAACGAAAACCTTAAACGAAACAAAACCAA-------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------ATTGTGTGTGTGTGTA--------C------------------------------TGGCTGGTTTTTGTGG-----------------------------TTG-----AACTAATGCTCTGAAGGTCGGCACTGGCACCCTACAGGAAACGATTGGCCTTGGCTTTCGGGAGGA-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TTCTTTTTT---GCT---TTCTT-CCATT--------TCTCTTTGTTCTCTAT------------------------------------TTCTATTTCTCTTTCTTCTCCCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTCCTTTTTTTT----------TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGTT--TCTGTGCGTGTGC-------------------------------GTGCGTGT--------GC--------------GTG----TG------------------CG----------TGCGTGTGCGTGTGTG--------T------------------------------GTGTGTGTGTGTGTGTGTGTCGTGTGCTGTGCA---------------------------------TGTTCGTGCTTGTTTGTTTTGTTGTGTGCTTTTGTGCTTTTCTTTTTGCAGAT-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTGT--------GC--------------GTG----TG------------------CG----------TGCGTGTGC......................................................................................................................................................................2611.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTCGTGTGCTGTGCA---------------------------------T.....................................................2611.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----TG------------------CG----------TGCGTGTGCGTGTG.................................................................................................................................................................2020.501000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGC-------------------------------GTGCGTGT--------GC--------------GTG----TG------------------...........................................................................................................................................................................................2020.501000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGTGCGTGTGTG--------T------------------------------GTGTGTGTG...............................................................................................................2530.331000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGTGCGTGTGTG--------T------------------------------GTGTG...................................................................................................................2130.331000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTGCGTGTGTG--------T------------------------------GTGTGTG.................................................................................................................2240.251000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGTGCGTGTGTG--------T------------------------------GTG.....................................................................................................................1970.141100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTG--------T------------------------------GTGTGTGTGTG.............................................................................................................18200.102200000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGTGTG--------T------------------------------GTGTGTGTGTG.............................................................................................................21200.051000001
droBip1
TCGATTCCG---TTT---CCGAATTTTTT----G----------------------GCTTCTCCAAACTCG------ACTCC-----------------------CC----------------CCTTTCCAACATCCTTTTGCATGCTTCT----GCACCCCC-----------------------------------------------------CCAATTTCCATACCCCATACCCC----------------------------------------------------------ACCCTCC----------TTAA---------------------------------ATCCC-------------------------------------------------CACGGAAATCAATCAAAAAAAAAA-----------------------------------------------------------------------AACTATCGCTCTGACAA------AACGA-------------A-----------------------------------------------------------AT----------------------ACTCGA----TA----------------------------------TGTGTGTGTGTA--------C------------------------------TGGCTGGTTTATGTGG---------------------TTATG---TGG-----AACTAATGCTCTGAAGGTCGGCACTGGCACCCTACAGGAAACAATCGGTCTCGGCTTTCGGGAGGA-SizeHit CountTotal NormTotal
No Reads
droKik1
TCTGTTTCT---GTT---CTCGCT---------------------------------------------------------------------------------CC----------------CATAACCCATAAC-CCGTGCATGCTTCT----TGGCCCTCA-----------------------------------------------------------------------------------------------------------------------------TCCATGCCTAATCCC----------ACCACCT-----------------------------AATCCTG---------------------------------------------ATC-------------------------------------------------GAAAAA-------------AAAAAAAACGAA-------------------------------------------AA---------------CCGTACTAA------ACTTGACACAACTAACAA------------------AC------------------CGAAAAACTACTCGA-------------------------------------AAATGTGTGTGTGTA--------T------------------------------TGGCTGGTTTATGTGG-----------------------------TTG-----AACTAATGCTCTGAAGGTCGGCACTGGCACCCTACAGGAAACGATTGGCCTTGGCTTCCGGGAGGA-SizeHit CountTotal NormTotal
No Reads
droFic1
TTTCTTCTT---CTT---CTT-CTGCTTG----C-------------------------------------------------ACCACCACCCACAATCT-------------CCCACCCCAATCTCCAT---------C-------------------------------------------------------------------------------------------------------CCCCAACT---------------------------------------------------------------------------------------------------AGTATTTATTGCGAATGACTTGGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAGTTTAGTATTTAG----------------CT--------------GC-AAATG--GGGCGTGTGT----GTAAG----------TGTGTGTGTGTGTGTA--------T------------------------------TTGCTCA-----------------------------------------------------GCTC----------------------------------------------CAACAATATTSizeHit CountTotal NormTotal
No Reads
droEle1
TGTTTTTCT---TTT---TTTTTTGTGCT----T----------------------TCTT-----------------------------TTCTATTTCTCTCTTTTTT----------------CTCTTTGTGATTACTCCCCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCTGAATCCTTTGTGTCCAATTTTTTTTT-------------------------------------------------------------------------------------------------------------------------CTTGTGCGTTGCATG--------------------------------------------------------------------------------------------------------------TT--GCGTGTGCGT----GTGTG----------TGTGTGTGTGTGTGTG--------T------------------------------TTGGTGT-----------------------------------------------------GCTTTTCTTTTTGCAGATGGAATTTTAAAGCTTAAAAGTAGGAAAAGGTCGGAGGAAAA-SizeHit CountTotal NormTotal
No Reads
droRho1
CGTTACC-GTTCAAC---TTTCTCGCAATTTTC--------CATGCCG---------------------------------------TTGCCCAGAGCTCTTGGCCGCGTCCTTCGACCTC------------------------------------CTTCACT-------------------------------------------------CCT---------------------------CTCCAGCT--------------------------TATT--GA-TATTGCAATTTAGCCAAC----------ATAAATT-----------------------------TGACAGA-----------------------------------------------------------------------------------------------------------------------------------CCAAAC---------AAGCGGTTTGGGGA-------------------------------------------------------------CTAAAGGGCGGGGTTTAA----------------GT--------------GC-CACTT--GTGT----------GTGTG----------TGTGTGTATGTGTGTG--------T------------------------------AAGGCGGC-------------------------------------------------------------------------------------------------------------AA-SizeHit CountTotal NormTotal
No Reads
droBia1
TGTCCTTTC---ACT---TTCTTCGCTTA----T-------------------------------------------------ATCGCTGTTTGTTGATC-------------TCTGTCACTGCATCGAA---------T-------------------------------------------------------------------------------------------------------CTATAACTC--------------TTAGCAT--------------------------------------------------------------------------------------TGCCACTTGTATTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTG--CCAGTGTGTGACA-------------------------------GTGTTGGC--------GT--------------GTG----TT------------------GG----------TGTGTGTGTGTTGGTG--------T------------------------------GTGTGTGTTGGTGTGT-----------------------------GTG-----TGTTGGTG-TGTGTGTGTTGGTGTGTGTGTGTTGGTGTTAATTGTTGGTGTTGGTGTTAACAGTGG-SizeHit CountTotal NormTotal
No Reads
droTak1
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTA--------C------------------------------TGGCTGGTTTATGTGG-----------------------------TTG-----AACTAATGCTCTGAAGGTCGGCACTGGCACCCTACAGGAAACGATTGGCCTTGGCTTTCGGGAGGA-SizeHit CountTotal NormTotal
No Reads
droEug1
TTGTTTTTC---ATT---CGTTTTTTTTT----T----------------------GTT---------------------------TTTTACCACCCCTCCCCTCTCC----------------ACCCTC---------T-------------------------------------------------------------------------------------------------------CGAT----------------------------------------AAAACCCTT----------------------------------------------TGGTAAAATCTGTAT---------------------------------------------------------------------------------ACTGTTTGTGTTTGTGTAAA------------------------------------------------------------------------------------------------------TGAAA-------------------------------AT------------------G---------CTCTA----TGTGTGTGTGAGT--------A--TCTGTGTGTGTGTGTGTGTGTGTG--------C------------------------------TTGTTTGT----------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TCGTTTCTG---TTT---TCGAC-TCTTG---------------------------------------------------CC-----------------------TC----------------CATTTCCTTAAACGCCTTGCATGCTTCT----TAACCCCCAACCACATCCTCACCTCACCTCACCTCCCCTGCCCGTGACCTGACCTAAC---CTGATCCCCA--ACGAATAAACCAAA-----------------------------------------------------T----------------------------------------------CGAAAAAA----------------------------------------------------------------------------------------------------------------------------------TCGAAAAACCAAACAA----AACTATCGCTCTGACTGCCGACTGACG--------------------------------------------------------------------------------------------------ACTCGA----TG----T--------GTGTGCG----------TGTGTGTGTGTGTGTA--------C------------------------------TGGCTGGTTTATGTGG-----------------------------TTG-----AACTAATGCTCTGAAGGTCGGCACTGGCACCCTACAGGAAACGATTGGCCTTGGCTTTCGGGAGGA-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCTTGGCTTTCGGGAGGA-2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................CATTTCCTTAAACGCCTTGCATGCTTCT----TAACCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................CTGACCTAAC---CTGATCCCCA--ACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................CCCAACCACATCCTCACCTCACCTCACCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGCTCTGAAGGTCGGCACTGGC.......................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-----AACTAATGCTCTGAAGGTCGGC.............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG--------------------------------------------------------------------------------------------------ACTCGA----TG----T--------GTGTGCG----------TG.............................................................................................................................................................................2111.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TCGTTTCTG---TTT---TCGAC-TCTTG---------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-----AACTAATGCTCTGAAGGTCGGC.............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAATGCTCTGAAGGTCGGCA............................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTATGTGG-----------------------------TTG-----AAC................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....TCTG---TTT---TCGAC-TCTTG---------------------------------------------------CC-----------------------TC----------------CATTTCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGTGG-----------------------------TTG-----AACTAATG...........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACG--------------------------------------------------------------------------------------------------ACTCGA----TG----T--------GTGTGCG----------TGTGTGT........................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTA--------C------------------------------TGGCTGGTTAG.............................................................................................................1871.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000200100000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGATTGGCCTTGGCTTTCG.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----T--------GTGTGCG----------TGTGTGTGTGT....................................................................................................................................................................20200.901800000000000000000000000000000000000000000000000000000001600000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTA--------C------------------------------TGGCTGGTTAC.............................................................................................................1860.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTA--------C------------------------------TGGCTGGTTTGA............................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----T--------GTGTGCG----------TGTGTGTGTGTG...................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----T--------GTGTGCG----------TGTGTGTG.......................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCG----------TGTGTGTGTGTGTGTA--------C------------------------------........................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTA--------C------------------------------TGGCTGGTTAGA............................................................................................................20110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----TG----T--------GTGTGCG----------TGTGTGTG.......................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCG----------TGTGTGTGTGTGTG.................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----TG----T--------GTGTGCG----------TGTGTGT........................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCG----------TGTGTGTGTGTGTGT................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCG----------TGTGTGTGTGT....................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----T--------GTGTGCG----------TGTGTGTGT......................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------GTGTGCG----------TGTGTGTGTGTGT..................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----T--------GTGTGCG----------TGTGTGTGTG.....................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----TG----T--------GTGTGCG----------TGTGTG.........................................................................................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----T--------GTGTGCG----------TGTGTGTGT......................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG----------TGTGTGTGTGTGTGTA--------.......................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----T--------GTGTGCG----------TGTGTGTG.......................................................................................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTG----------TGTGTGTGTGTGTGTA--------C------------------------------TGGCTGGTTTATGTGG-----------------------------TTG-----AACTAATGCTCTGAAGGTCGGCACTGGCACCCTACAGGAAACGATTGGCCTTGGATTTCGGGAGGA-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTA--------C------------------------------TGGCTGGG................................................................................................................2111.00100000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-----AACTAATGCTCTGAAGGT.................................................2111.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGTGG-----------------------------TTG-----AACTAATGCTCT.......................................................2311.00100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTACAGGAAACGATTGGCCTTGGA............2711.00100000000010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-----AACTAATGCTCTGAAGGTCGGCAC...........................................2611.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-----AACTAATGCTCTGAAGGTCGGCACT..........................................2711.00100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTA--------C------------------------------TGGCTGGTTTATGTGG-----------------------------...........................................................................2311.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------TGTGTGTGTGTGTGTA--------C------------------------------T.......................................................................................................................19200.05100000000000001000
droSec2
TCGTTTCTG---TTT---TCT---GCCTC----C------------------------------------GACTCTTG--CC-----------------------TC----------------CATTTCCTTAAACGCCTTGCATGCTTCT----TAACCCCCAACCACATCCTCACCTCACCACACCTCACCT------GACCTGACCTATC---CTGATCCCCA--ACGAATAAACCAAATCAAA----------------------------------------AAAAAAAAT----------------------------------------------CGAAAAAA----------------------------------------------------------------------------------------------------------------------------------TCGAAAAACCAAACCAAACAAACTATCGCTCTGACTGCCGACTGACG--------------------------------------------------------------------------------------------------ACTCGA----TG--------------TGTGTG----------TGTGTGTGTGTGTGTA--------C------------------------------TGGCTGGTTTATGTGG-----------------------------TTG-----AACTAATGCTCTGAAGGTCGGCACTGGCACCCTACAGGAAACGATTGGCCTTGGATTTCGGGAGGA-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGA----TG--------------TGTGTG----------TGTGT..........................................................................................................................................................................1860.1710010
droYak3
CCACCCATC---AAC---CTT--------------------------------------------------------GTGCCCACCACCCCCAAGAAT---CCGC---------CCACCCTAA-----------------------------------------------------------CGTACCGCTATTTCCT--TCGTTGCCTTTTG---CCAATTCGCATTTCGTATACGCCATG---------------------------------------------------------------------------------------------------TCGCCAATTTC-----------------------------------------------------TGCGAATTTTCGCCAAAAAGCACAAATTTGTTATGCGATTGTCTT--------------------------------------------------------------------------------------------------TGTAAG------AGTGCGCGTGTATTGGTA------------------AT------------------G---------GTAAT----GGTGTGTG----------TAAG----------TGTGTGTGTGTGTGTATCTGTG--T------------------------------GAGTT------T---------------CGTTTGTG--TCG-----CTG-----ACTGTG--TGCTTAATGCGCCAACGAGCACCGCACACGAAAC-------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TGTATTTTA---GTG---CTTTTTTTTTT----A----------------------ATA-------------------------TTTTTAT-----------------------------------CGAA---------A-------------------------------------------------------------------------------------------------------CCCCACCACTTACACAACTCCACTCGCG----------------------------------------------------------------------------------GTGT---------------------------------------------------------------------------------GCTTTTTGCG--------------------------------------------------------------------------------------------------------TG------TGTGCGTGCGT-------TTCACCTTTTCTCTTTT---CCGTGT--------CTA-----------TGCG-----------AACGCGT--GTGTGTG----------TGTGTGTGTGTGTGTG--------T------------------------------GGAATGGTATCTGTGT--------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT-------TTCACCTTTTCTCTTTT---C...................................................................................................................................................................................................................................................2111.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GTGTGTG----------TGTGTGTGTGTG...................................................................................................................................................................20200.0510000010

Generated: 05/16/2015 at 09:56 PM