ID:

dvi_9278

 Coordinate:

scaffold_12928:7493640-7493790 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ17064-cds]; exon [dvir_GLEANR_17565:1]; intron [Dvir\GJ17064-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+
mature
  1. scaffold_12855:4551787-4551806 +
  2. scaffold_12875:1459533-1459552 +
  3. scaffold_12875:16830650-16830669 +
  4. scaffold_12928:1581988-1582007 +
  5. scaffold_12928:4356721-4356740 +
  6. scaffold_12928:5661078-5661097 -
  7. dvi_9278  scaffold_12928:7493771-7493790 +
  8. scaffold_12963:3276853-3276872 +
  9. scaffold_12963:18833236-18833255 +
  10. scaffold_12970:1829719-1829738 +
  11. scaffold_12970:3381584-3381603 -
  12. scaffold_12970:3833270-3833289 +
  13. scaffold_12970:10106632-10106651 -
  14. scaffold_12970:10186990-10187009 +
  15. scaffold_12970:10522552-10522571 +
  16. scaffold_13047:6210168-6210187 +
  17. scaffold_13047:13767715-13767734 +
  18. scaffold_13047:16939561-16939580 -
  19. scaffold_13049:12682193-12682212 +
  20. scaffold_13049:22474157-22474176 +
  21. scaffold_12928:1614921-1614940 -
  22. scaffold_12963:44780-44799 -
  23. scaffold_12963:6725671-6725690 -
  24. scaffold_13049:13685743-13685762 -
star
  1. scaffold_10324:517521-517544 -
  2. scaffold_12855:9830507-9830530 +
  3. scaffold_12875:849477-849500 -
  4. scaffold_12875:17455328-17455351 +
  5. dvi_9278  scaffold_12928:7493735-7493758 +
  6. scaffold_12970:11372583-11372606 -
  7. scaffold_13047:15586601-15586624 -
  8. scaffold_13049:439945-439968 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATCACGAGGAGGACAGTCGCGAGAGCAGTCCGGAGAACGTGTTCGAGCAGGTAAGCGTTTTGGCCAATTGTCACAGTTGCCCCGCCGGCGGCAACTAGTCCGCTTAGTGGCTAGTAGCTTGGCTTCTAGAGCAGCGTCTACACCCAGCAGCAACAACAACATCAACAACAACAACAACAACAACAACAGCAACAACAACACACAATTGACTTTGGCTAGCCGAAGCCTGAATACCCTTGCAGCTAAACGGG
*************************************************************************************************************************************************........................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M047
female body
 SRR060667
160_females_carcasses_total
 SRR060664
9_males_carcasses_total
 SRR060670
9_testes_total
 SRR060678
9x140_testes_total
 SRR1106729
mixed whole adult body
 V047
embryo
............................................................TGGCCCATCGTCACTGTTGCC.......................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................AACAACAGCAACAACAACAC.................................................. 20 0 20 0.15 3 0 2 1 0 0 0 0 0
.................................................................................................................................................AGCAGCAACAACAACATCAACAAC.................................................................................. 24 0 8 0.13 1 0 0 0 1 0 0 0 0
............................................................TGGGCAATTGTCAACGTTGCC.......................................................................................................................................................................... 21 3 11 0.09 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................AACATCAACAACAACAACAACAACAA.................................................................... 26 0 20 0.05 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................GCAACAACAACATCAACAA................................................................................... 19 0 20 0.05 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................AACAACATCAACAAC.................................................................................. 15 0 20 0.05 1 0 0 0 0 0 0 1 0
....................................................................................................................................................AGCAACAACAACATCAACA.................................................................................... 19 0 20 0.05 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................CAACAACAACAACAACAACAGCA............................................................ 23 0 20 0.05 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................AACATCAACAACAACAACAACAACA..................................................................... 25 0 20 0.05 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................AACAACAACAACAACAACAGCA............................................................ 22 0 20 0.05 1 0 0 0 0 1 0 0 0
.....GAAGAGGACAGTCGCACG.................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1
.................................................................................................................................................AGCAGCAACAAGAACATCAACA.................................................................................... 22 1 20 0.05 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................ACAACAACAGCAACAACAACA................................................... 21 0 20 0.05 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

TAGTGCTCCTCCTGTCAGCGCTCTCGTCAGGCCTCTTGCACAAGCTCGTCCATTCGCAAAACCGGTTAACAGTGTCAACGGGGCGGCCGCCGTTGATCAGGCGAATCACCGATCATCGAACCGAAGATCTCGTCGCAGATGTGGGTCGTCGTTGTTGTTGTAGTTGTTGTTGTTGTTGTTGTTGTTGTCGTTGTTGTTGTGTGTTAACTGAAACCGATCGGCTTCGGACTTATGGGAACGTCGATTTGCCC
**************************************************........................................................************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 M028
head
 SRR1106728
larvae
 SRR1106727
larvae
 SRR060672
9x160_females_carcasses_total
 SRR1106729
mixed whole adult body
 V047
embryo
 SRR060662
9x160_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060666
160_males_carcasses_total
 SRR060683
160_testes_total
 SRR060679
140x9_testes_total
 SRR060671
9x160_males_carcasses_total
 SRR060687
9_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 V053
head
..........................................................................................CGTTCATCAGGCGAATCG............................................................................................................................................... 18 2 3 1.67 5 3 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CGTTCATCAGGCGGATCA............................................................................................................................................... 18 2 4 1.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TCAACGGGGAGGGCGCC................................................................................................................................................................ 17 2 9 0.78 7 0 0 4 3 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GCACAAGCTAGTCCA....................................................................................................................................................................................................... 15 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................CCGTCGTTCATCAGGCGGATC................................................................................................................................................ 21 3 6 0.33 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................GCGCTCTTCAGGCCTGTTGC.................................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................CCGTTCATCAGGCGGATC................................................................................................................................................ 18 2 7 0.29 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CGTTCATCAGGCGGATCAT.............................................................................................................................................. 19 3 15 0.27 4 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0
......................................................................................CCGTCGTTCATCAGGCGGAT................................................................................................................................................. 20 3 12 0.25 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CGTTCATCAGGCGGATCGCC............................................................................................................................................. 20 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................GGCGTTCATCAGGCGGATC................................................................................................................................................ 19 3 13 0.23 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CGTTCATCAGGCGGATC................................................................................................................................................ 17 2 14 0.21 3 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0
..............................................................................................................................................................TGTAGTTGTTGTTGTTGTTG......................................................................... 20 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0
..........................................................................................CGTTCATCAGGCGAATCGTC............................................................................................................................................. 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................GGGTCGTCGTTGTTGTTG........................................................................................... 18 0 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................CTGTTGTTTGGTAACTGAAA...................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................CGTTCATCAGGCGAATCGT.............................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:7493590-7493840 + dvi_9278 ATCACGAG-GAGGACAGTCGCGAGAGCAGTCCGGAGAACGTGTTCGAGCAGGTAA----------------------------------------------------------------------------GCGTT------T-------TGGCCAATTGTCACAGTTGCCC--------------------------------------------------------------------CGCCGGCGGCAACTA-GTCC-GCTTAGTGGCTAG-TAGCTTGG-CTTCTAGAGCAGCG---------TCT--A----------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC--------------------------------------------------------------------------------------CC---------AGCAGCAACAAC---------------AA------------------------------------------------------------------------------------------------------------CATC---AACAA---CAACA---------A---CAACAA-----CAA------CAACAG------------CAA---CAA---------CA------ACACA-----------C------AA-------TTGACTTTGGC----TAGCCGAAGCCT-GAAT--------------ACCCTTGCAGCTAAACGGG-----------
droMoj3 scaffold_6473:2540974-2541295 - ATCACGAG-GAAGATAGCCGCGAGAGCAGCCCCGAGAACGTGTTCGAGCAGGTAAGAAT------------------------------------------------------------------------GGGAT------T-------TGGCCAACAGTCTC---TGCTC--------------------------------------------------------------------CCG-----GGAGCGA-GACCGGCTTAGTGGTTAGATAGCTTGG-CTTTTAGAGCAGCGATGCTGTCGTTTAAACACACCAACAG----------------CAACAGCC-------------------------------------------------------------------------------------------------------------------------AC-----------TACCACAGCCACAGCCA------CTGCCACAGCC----------------------------------------ACT------------ACAG---CTACAGCAA-------------------TACACCAA------------------------------------------------------------------------------------------------------CAAC---AATAA---------------------CAAC--AGATACAA---CAACTACAG------------CAA---CAA---------CA------AAATA-----------TAACCACCAAATCCAAATTACTTTGGC----CAGCCGAAGCTT-TAAT--------------ACCCTTGCAGCTAA----------------
droGri2 scaffold_14853:9659261-9659535 - ACCACGAG-GAGGACAGTCGCGAGAGCAGTCCGGAGAACGTTTTCGAGCAGGTAAG---------------------------------------------------------------------------GCGAC------T-------TAG-------------TTGCTC--------------------------------------------------------------------CTTC----TAATCGATGTCCGGCTTAGTGGCTAG-TAGCTTGG-TTTTTAGAGCAGCGACACTGCCTTTCAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC--------------------------------------------------------------------------------------CCAGCCACAACAACAACAGCAAC------CACAGCCACAACA------------------------------------------------------------------------------------------------------GCCACAACAACAACAG---CAACTA------------CCAGA--------A------CAATGACAA---------AAGCAACAAAAATAT-------------------------------TACAT-------TTAACTTTGGC----CTGCCAATGCTTTTTAT--------------GCCCTTGCAGCCAA----------------
droWil2 scf2_1100000004902:9098686-9098863 - AGCAAGCA--------------------ATCA-------------------------TCTGTGG---------------------------------------------------------------------------------------------------------CGGCGGTAGCCGCAGCTG----------------------------------------------------CCGCAGTTGTCAATTA-CTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------CAAAA---GTT------------GCAA---CA---GCAGCAACAACAACAGCAACAGCAGCA------------------------------------------------------------------------------------------------------ACAGCAACAACAGCAG---CAGCAA------------CAGCA--------G------CAACAACAG---------CAG---C------------AACAGCAACA----GTTGCTGCAT-----------------------AGCCAGCTAGCGGCCGA-----AT--------------------------------------------
dp5 4_group1:4366230-4366431 + dps_1414 GTCAGGCAATGGGCCAGCAGCAGCAGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------CCACAGCCA--------------------------------------------------------------------------------------------------------------------------------A---------------------------------------CGCAGCAGCAA---CA----A----------------------------------------------------------------------------------------------------------------------------------------------GTGGTTGTGCCACCAGTGGCGGCACAGCCGCAACCGCC--AGTGGCAACAAC-ACAACAACA---GCAGCAACAACAAGTGCAGCAGCAGCA------------------------------------------------------------------------------------------------------CCAACAGCAGCAGCAG---CAACAACAACAACAG---CAGCA-----GCAG------CAACAA------------------------CAGCAGCAGCAACAGCA---------------------------------------------------------------------------------------------------------
droPer2 scaffold_56:105343-105607 + CATGGGGG-CA-----------------GTCCAGCGCACGAATCT------------------GCTGGTGAAC-----------------AGCTCCCTGACG---AATAC---------------------------------------------GGTGGCTGCAGCGGCGGCGGCGGCTGCAGCTG-----------------------------------------------------------------------------CAGTGGCAAG-TAACACG-----TT-------------------------------------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------CAGCAG------CACCACCAACA----------------------------------------GCA------------GCAG---CAGCAGCAGCAGC---------------AACACCAA------------------------------------------------------------------------------------------------------CAGC---AGCAA---CAGCAGCAGCAACACCAACAGCA--------G------CAACAA------------CAA---------CAC---CAACAGCAACA----TTTA------------------------------------CCGCAGCAGC-----ATTTAATTCGGGCGATAC--CTGTATCAAGGTGAGTCGTGATCTCC
droAna3 scaffold_13337:5872180-5872364 + GAGCTGAA-CA-----------------GTCA-------------------------TGTGAGGCGGGAGAAC-----------------GGCACCAGTATGTTGCAGCC---------------------------------------------AGTGGTCAC---------------------------------------------------------------------------------------------------------------------------------------AGAGGC--------TACTACGGCGG----------------CA-CTGCA-------------------------------------------------------------------------------------------------------------------------ACATGCCAATCAA-----------------CTGGCCAC----------------------------------------------------------------------------CCAGCAACAGCAATTGCAACAGCAACA------------------------------------------------------------------------------------------------------GCAGCAACAACAGCAG---CAACAG------------CAACA--------G------CAGCAGCAG---------CAG---CAA---------CA------TCACA-----------T------------------------------------------------------------------AGT----------------------
droBip1 scf7180000396360:488710-488890 - AGCAGGAG-GAACATA--TGTTGGCGTGGTCCTGGCAACATCGTC-AGCAAGTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGC--------GACGGCTGCAG----------------CAGCAGCA-------------------------------------------------------------------------------------------------------------------------GC-----------AACAGCAGTATCAGCAG------CT-------------------------------------------------------------------------GCAGCAGCATC---------------AACAACTGC---------------------------------------------------------------------------------------AGCAGCATCAACAACAGC---AACAG---CATCA---------A---CAACAG-----CAG------CAGCAT---CAACAACAGCAG---C------------A---TCAACA---------------------------------------------------------------------------------------------------------
droKik1 scf7180000302592:621691-621890 - GCCGC----------------------------------------------------------------------------------------ACCAGATGGTCGCCGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGGTTCGCCGGTGATGC--------TTCACCAGCAG----------------CAGCAACA-------------------------------------------------------------------------------------------------------------------------GC-----------ACCTTCAGCAGCAGCAG------CAGCAGCATCA----------------------------------------TCA------------ACAG---CAGCAGCAACACC---------------AACAGCAGC---------------------------------------------------------------------------------------AGCAGCAGCAA---CACC---AGCAA---CAGCA---------G---CAAC-----------------------------------------------ATCAC---CAACAG----CAGCAGCAGCAACATCACCAGC--------AATTTGGC----CAGCAGCAGC---------------------------------------------------
droFic1 scf7180000453826:1224383-1224620 - ATCACGAG-CAGC--A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACATGAGCAG--------CGGCAACA----TGTCCGCCAGCAACACCAACTCGCAAATCCTGAGTCCCGCTCACCCGGCCGGATTAAATCCGCTTTCCAGTCCCACCTCGCCGTCGGCACTGCTG-----------------------------CTGGCCCACCAGCAACA----------------------------------------TCT------------GCTG---CAGCAGCACCAGC---------------AACAC------------------------------------------------------------------------------------------------------CAGCAGC---AACAG---------------------CAGC--A------G------CAACAG---CAACAGCAGCAG---C------------A---GCAACAAG-----------C-------GGC--------CCTCCAGC----TGGCCGCAG----------------------------------------------------
droEle1 scf7180000491023:264644-264855 - T-CACCAG-CAGC--A------GCAG-----------------------------------------------------------------------------------------------------------------------------------------------CAACAGCA------ACAGAGGAATCTCTACTATGCTAGTGAGCATTATCCAGGAGGCAATGGGGGCAGTGCTGCCGGCGGCAATC------------------------------------------------------------------------------------------------------------------------CGGGCT------------------------------------------------------------------------------------------------------------------------------ACT------A----------------------------------------CTG------------ACAA---CAACACTAGCAACAACATTAGCAGCAACAACA------------------------------------------------------------------------------------------------------CCAACAACAACACCAA---CAACAA------------CACTA--------G------CAACAGCAG---------CAG---C------------AACAACAAGA-------------------------------AGCCTTGGC----TAA-------------------------------------GCAAA----------------
droRho1 scf7180000778058:6481-6658 - TCCAGGAG-AAGG----------------------------------------------------------------------------------------------------------------------CGCAGAGCAATTCGGAGCTGCAG-CACG-----------------C-TCACACCAA--------------------------------------------------------------------------------------------------------------------------------G---------------------------------------TTCACCTATGC---CA----G----------------------------------------------------------------------------------------------------------------------------------------------GTCCCTGTTCCACC--------------------------A------------GCGACAACA---GCAGCAGCAACAACAGCAGCAACAGCA------------------------------------------------------------------------------------------------------ACAACAACAGCAGCAG---CAGCAGCAGCAACAACAGCAGC-----------------AG---------------------CAACAACAGCAGCAGCAACTACA---------------------------------------------------------------------------------------------------------
droBia1 scf7180000302402:4220154-4220347 + CAAG--TG-GAGGACGTCC-------------AGC-------------------------------------------------------------TGGAGATCTCC---GGCGATCGGAGGAGGGGTAGGCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAGC--------CAAGGCTGCAG----------------CAACAGCA-------------------------------------------------------------------------------------------------------------------------GC-----------ATCAGCTGCAACCTCAG------CACCAGCTACA----------------------------------------AGC------------GCTA---CAGCAGCAGCAGC---------------AACAACAGC---------------------------------------------------------------------------------------AGCAGCAGCAACAACAGC---AGCAG---CAGCA---------A---CAACA--------G------CAGCAG------------CAGCAAC------------AACA---GCA---------------------------------------------------------------------------------------------------------
droTak1 scf7180000412373:133310-133492 + AAGAGCTA-CA-----------------GCCA-------------------------ATTTAATTTAAACGCCGCCGCCCCGCCCGCCATTGCATTTGATAGTTTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGAATCCCAGTGGATCGCCGATTCTCG--------ATCCTCTCCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGC------------------------AG---------------------------------------------------------------------------------------------------------CAGCAGC---AACAA---------------------CAGC--AGTCACAG---CAACAACAA------------CAG---CGC---------CA------GGACA-----------T-----GCCGC--------ACTTTGGA----CTTCCGGGTCCT-------------------------------------------------
droEug1 scf7180000409466:454871-455060 - AGCCTGCC-GAACACCATTTCTAT--------------------------------------------------------------------------------------AACGAGCAGCTCGGGAGGAGCCCCGCTGAATTTTGGGGATGCCGCTATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG-------------------------------------------------------------------------------------------------------------------------AC-----------GCCCACTCCGGCGGCCG------CACCTACGCCGC--CCACT------------------------CTTTCGCT--GATTGCTACACC-ACAG---CAACAGTTGCAGA---------------TGCA------------------------------------------------------------------------------------------------------------TC---AGCAA---CAACA---------A---CAACA--A---CAACAACAGCTAC---------------------------------ATCA---AC----------------------------------------------------------------------------------------------------------
dm3 chrX:9648966-9649196 + GCCGC----------------------------------------------------------------------------------------ACCAGATGGTCGCCGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGGTTCGCCGGTGATGC--------TTCACCAGCAGCAGCAGCAGCAGCAAC---------------ATCAGCAGCAACAG----------------------------------------------------------------------------------------------------------------------CAGCAACAGCAG------CAGCAGCAGCA----------------------------------------TCA------------ACAG---CAGCAACAGCAGCAAC------------ATCAACAG------------------------------------------------------------------------------------------------------------CAGCAG---CAGCAA------------CATCA--------G------CAGCAGCAG---------CAG------CAACACCAC---CAGCAA----CAGCAGCAGCATCATCACCAGC--------AATTTGGC----CAGCAGCAGC-----AT--------------CCCCATGC----------------------
droSim2 x:9192685-9192885 + GCCGC----------------------------------------------------------------------------------------ACCAGATGGTCGCCGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGGTTCGCCGGTGATGC--------TTCACCAGCAG----------------CAGCAGCA-------------------------------------------------------------------------------------------------------------------------AC-----------ATCAGCAGCAACAGCAG------CAGCAGCAGCA----------------------------------------TCA------------ACAG---CAACAGCAGCAGC---------------AACATCAGC---------------------------------------------------------------------------------------AGCAACAGCAGCAGCAG-----------------------------------------------------------------------------CAACACCAC---CAGCAA----CAGCAGCAGCATCATCACCAGC--------AATTTGGC----CAGCAGCAGC-----AT--------------CCCCATGC----------------------
droSec2 scaffold_15:411129-411329 + GCCGC----------------------------------------------------------------------------------------ACCAGATGGTCGCCGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGGTTCGCCGGTGATGC--------TTCACCAGCAG----------------CAGCAGCA-------------------------------------------------------------------------------------------------------------------------AC-----------ATCAGCAGCAACAGCAG------CAGCAGCAGCA----------------------------------------TCA------------ACAG---CAGCAGCAGCAGC---------------AACATCAGC---------------------------------------------------------------------------------------AGCAACAGCAGCAGCAG-----------------------------------------------------------------------------CAACACCAC---CAGCAA----CAGCAGCAGCATCATCACCAGC--------AATTTGGC----CAGCAGCAGC-----AT--------------CCCCATGC----------------------
droYak3 X:19159767-19160011 + AACACGAA-CAGC--A------ACGG-----------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAACAGCAGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAACATTGGCT------------------------------------------------------------------------------------------------------------------------------ACC------A----------------------------------------GCA------------ACAC---CAGCAGCAGCAGC---------------AACAGCAGCCGCCGTTGATCCTGTCGCAGGCTCTGCTGTCGCCATCGCCGCCGCTCAACGATCAGATCAGCTTGCTATTCCCCAAGTGCCGACCCAAACAGCAGCAGCAACAGC---AACAGCAACA------------G---CAACAG-----CAG------CAACAG------------CAG---CAA---------CAGCAGCAGCA--------------------------------ACTTCAGC----CAG-----------------------------------C----------------------
droEre2 scaffold_4770:14415248-14415433 - ACAAGGAG-CACG---AGCGAGAGAAGGCGAAGGAGAAAGCAAACGAAGAGGAGG----------------------------------------------------------------------------CCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCGACGATTC------CGACGACGACGTCGTGGTTGTGCT-------------------CGAAGGCTGCGAAGGCAACGCC---------AGCAGCAGCAGC---------------AG---------------------------------------------------------------------------------------------------------CAGCAGC---AACAG---CA------------G---CAGCA-----ACAG------CAACGCCAG---------CAG---C------------AACA---ACCAA---------------------------AAGGCCGCGGC----CA-----------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATCACGAG-GAGGACAGTCGCGAGAGCAGTCCGGAGAACGTGTTCGAGCAGGTAA----------------------------------------------------------------------------GCGTT------T-------TGGCCAATTGTCACAGTTGCCC--------------------------------------------------------------------CGCCGGCGGCAACTA-GTCC-GCTTAGTGGCTAG-TAGCTTGG-CTTCTAGAGCAGCG---------TCT--A----------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC--------------------------------------------------------------------------------------CC---------AGCAGCAACAAC---------------AA------------------------------------------------------------------------------------------------------------CATC---AACAA---CAACA---------A---CAACAA-----CAA------CAACAG------------CAA---CAA---------CA------ACACA-----------C------AA-------TTGACTTTGGC----TAGCCGAAGCCT-GAAT--------------ACCCTTGCAGCTAAACGGG-----------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------CAACAG------------CAA---CAA---------CA------ACAC........................................................................................................20200.153002000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAAC---------------AA------------------------------------------------------------------------------------------------------------CATC---AACAA---C.............................................................................................................................................................................................2480.131000000000000001000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------------------------------------------------------------------------------------------------CATC---AACAA---CAACA---------A---CAACAA-----CAA------........................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAC---------------AA------------------------------------------------------------------------------------------------------------CATC---AACAA---..............................................................................................................................................................................................19200.051000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---------------AA------------------------------------------------------------------------------------------------------------CATC---AACAA---C.............................................................................................................................................................................................15200.051000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAAC---------------AA------------------------------------------------------------------------------------------------------------CATC---AACA..................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA---------A---CAACAA-----CAA------CAACAG------------CA....................................................................................................................................23200.051000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------------------------------------------------------------------------------------------------CATC---AACAA---CAACA---------A---CAACAA-----CA...............................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---------A---CAACAA-----CAA------CAACAG------------CA....................................................................................................................................22200.051000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----CAA------CAACAG------------CAA---CAA---------CA------ACA.........................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
ATCACGAG-GAAGATAGCCGCGAGAGCAGCCCCGAGAACGTGTTCGAGCAGGTAAGAAT------------------------------------------------------------------------GGGAT------T-------TGGCCAACAGTCTC---TGCTC--------------------------------------------------------------------CCG-----GGAGCGA-GACCGGCTTAGTGGTTAGATAGCTTGG-CTTTTAGAGCAGCGATGCTGTCGTTTAAACACACCAACAG----------------CAACAGCC-------------------------------------------------------------------------------------------------------------------------AC-----------TACCACAGCCACAGCCA------CTGCCACAGCC----------------------------------------ACT------------ACAG---CTACAGCAA-------------------TACACCAA------------------------------------------------------------------------------------------------------CAAC---AATAA---------------------CAAC--AGATACAA---CAACTACAG------------CAA---CAA---------CA------AAATA-----------TAACCACCAAATCCAAATTACTTTGGC----CAGCCGAAGCTT-TAAT--------------ACCCTTGCAGCTAA----------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ACCACGAG-GAGGACAGTCGCGAGAGCAGTCCGGAGAACGTTTTCGAGCAGGTAAG---------------------------------------------------------------------------GCGAC------T-------TAG-------------TTGCTC--------------------------------------------------------------------CTTC----TAATCGATGTCCGGCTTAGTGGCTAG-TAGCTTGG-TTTTTAGAGCAGCGACACTGCCTTTCAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC--------------------------------------------------------------------------------------CCAGCCACAACAACAACAGCAAC------CACAGCCACAACA------------------------------------------------------------------------------------------------------GCCACAACAACAACAG---CAACTA------------CCAGA--------A------CAATGACAA---------AAGCAACAAAAATAT-------------------------------TACAT-------TTAACTTTGGC----CTGCCAATGCTTTTTAT--------------GCCCTTGCAGCCAA----------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AGCAAGCA--------------------ATCA-------------------------TCTGTGG---------------------------------------------------------------------------------------------------------CGGCGGTAGCCGCAGCTG----------------------------------------------------CCGCAGTTGTCAATTA-CTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------CAAAA---GTT------------GCAA---CA---GCAGCAACAACAACAGCAACAGCAGCA------------------------------------------------------------------------------------------------------ACAGCAACAACAGCAG---CAGCAA------------CAGCA--------G------CAACAACAG---------CAG---C------------AACAGCAACA----GTTGCTGCAT-----------------------AGCCAGCTAGCGGCCGA-----AT--------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....GCA--------------------ATCA-------------------------TCTGTGG---------------------------------------------------------------------------------------------------------CGGCGGTAGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
.......A--------------------ATCA-------------------------TCTGTGG---------------------------------------------------------------------------------------------------------CGGCGGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...............................................................................................................................................................................................................................................CCGCAGTTGTCAATTA-CTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------CAAAA---GT...........................................................................................................................................................................................................................................................................................................................................................................2711.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAACAGCAGCA------------------------------------------------------------------------------------------------------ACAGC............................................................................................................................................................................................................2730.33101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAACAGCAGCA------------------------------------------------------------------------------------------------------ACAGC............................................................................................................................................................................................................2460.17100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAACAGCAGCA------------------------------------------------------------------------------------------------------AC...............................................................................................................................................................................................................24200.15300030
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAGCAGCA------------------------------------------------------------------------------------------------------ACAGCAA..........................................................................................................................................................................................................22150.07100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACAGCAACAGCAGCA------------------------------------------------------------------------------------------------------.................................................................................................................................................................................................................25180.06100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA--------G------CAACAACAG---------CAG---C------------AACAGCA............................................................................................................25190.05101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCA------------------------------------------------------------------------------------------------------ACAGCAACAACAG....................................................................................................................................................................................................24190.05100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------------------------------------------ACAGCAACAACAGCAG---CAGCAA------------............................................................................................................................................................................23200.05101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAACAGCAG---CAG...........................................................................................................................................................................................19200.05100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---CA---GCAGCAACAACAACAGC.................................................................................................................................................................................................................................................................................................................................20200.05100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA------------CAGCA--------G------CAACAACAG---------C.....................................................................................................................................19200.05100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------G------CAACAACAG---------CAG---C------------AACAGC.............................................................................................................21200.05101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA------------------------------------------------------------------------------------------------------ACAGCAACAACAGCAG---CAGCAA------------............................................................................................................................................................................27200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------------------------------------------ACAGCAACAACAGCAG---CAGCAA------------CA..........................................................................................................................................................................25200.05100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAGCA------------------------------------------------------------------------------------------------------ACAGC............................................................................................................................................................................................................22200.05101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA------------------------------------------------------------------------------------------------------ACAGCAACAACAGCAG---CAGC..........................................................................................................................................................................................25200.05100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAACAGCAGCA------------------------------------------------------------------------------------------------------ACA..............................................................................................................................................................................................................26200.05100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------G------CAACAACAG---------CAG---C------------AACAGCAAC..........................................................................................................24200.05100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAG---CAGCAA------------CAGCA--------...............................................................................................................................................................19200.05100001
dp5
GTCAGGCAATGGGCCAGCAGCAGCAGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------CCACAGCCA--------------------------------------------------------------------------------------------------------------------------------A---------------------------------------CGCAGCAGCAA---CA----A----------------------------------------------------------------------------------------------------------------------------------------------GTGGTTGTGCCACCAGTGGCGGCACAGCCGCAACCGCC--AGTGGCAACAAC-ACAACAACA---GCAGCAACAACAAGTGCAGCAGCAGCA------------------------------------------------------------------------------------------------------CCAACAGCAGCAGCAG---CAACAACAACAACAG---CAGCA-----GCAG------CAACAA------------------------CAGCAGCAGCAACAGCA---------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.TCAGGCAATGGGCCAGCAGCAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCCGCAACCGCC--AGT........................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGTGGCGGCACAGCC......................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACAAC-ACAACAACA---GCAG..............................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.........................................................................................................................................................................................CA--------------------------------------------------------------------------------------------------------------------------------A---------------------------------------CGCAGCAGCAA---CA----A----------------------------------------------------------------------------------------------------------------------------------------------GTGGT..............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................CAA---CA----A----------------------------------------------------------------------------------------------------------------------------------------------GTGGTTGTGCCACCAGTGGC...............................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAAGTGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................1911.0010010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGTGCAGCAGCAGCA------------------------------------------------------------------------------------------------------CCAAC............................................................................................................................................................................................................2611.0010010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------------------------------------------------------------------------------------------------------CCAACAGCAGCAGCAG---CAACAA........................................................................................................................................................................................2620.5010000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAG---CAGCA-----GC................................................................................................................................................................20200.1530300000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------------------------------------------------------------------------------------------CCAACAGCAGCAGCAG---CAAC..........................................................................................................................................................................................2270.1410000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAG---CAGCA-----GCAG------CAACAA------------------------CA........................................................................................................................2790.1110100000000
..............CAGCAGCAGCAGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------CCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19180.1120200000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA------------------------CAGCAGCAGCAACAGC..........................................................................................................21200.1020200000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CAGCA-----GCAG------CAACAA------------------------C.........................................................................................................................19200.1020000200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAG---CAACAAC.......................................................................................................................................................................................19200.1020000200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------------------------------------------------------------------------------------------------------CCAACAGCAGCAGCAG---..............................................................................................................................................................................................22100.1010000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAG---CAGCA-----GCAG------C.......................................................................................................................................................22200.1020000200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG---CAGCA-----GCAG------CAACA...................................................................................................................................................18200.1020000200000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAG---CAGCA-----GCAG------CAACAA------------------------C.........................................................................................................................26100.1010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAG---CAACAACAACAAC.................................................................................................................................................................................23200.1020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---CAACAACAACAACAG---C...........................................................................................................................................................................20200.1020200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG---CAGCA-----GCAG------CAACAA------------------------CAGCAGCA..................................................................................................................28140.0710100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCA------------------------------------------------------------------------------------------------------CCAACAGCA........................................................................................................................................................................................................21140.0710100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAG---CAACAACAACAAC.................................................................................................................................................................................26140.0710010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA------------------------------------------------------------------------------------------------------CCAACAGCAGC......................................................................................................................................................................................................18160.0610100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CAGCA-----GCAG------CAACAA------------------------CAGCAG....................................................................................................................24200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACAGCAGCAGCAG---CAAC..........................................................................................................................................................................................20200.0510010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACAGCAGCAGCAG---CAA...........................................................................................................................................................................................19200.0510000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------CAACAA------------------------CAGCAGCAGCAA..............................................................................................................20200.0510000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAACAACAACAACAG---CAGCA-----GC................................................................................................................................................................24200.0510010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAG---CAGCA-----GCAG------........................................................................................................................................................20200.0510000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAG---CAGCA-----GCAG------CAAC....................................................................................................................................................25200.0510000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----GCAG------CAACAA------------------------CAGCAGCA..................................................................................................................21200.0510010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA-----GCAG------CAACAA------------------------CAGCAGCAG.................................................................................................................24200.0510100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAG---CAGCA-----GCAG------C.......................................................................................................................................................21200.0510010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA-----GCAG------CAACAA------------------------CAGCA.....................................................................................................................19200.0510000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAGCA-----GCAG------CAACAA------------------------CAGCAGC...................................................................................................................23200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACA---GCAGCAACAACA......................................................................................................................................................................................................................................................................................................................................21200.0510100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAG---CAACAACAACA...................................................................................................................................................................................20200.0510000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAGCA-----GCAG------CAACAA------------------------CAGCAG....................................................................................................................23200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAG---CAGCA-----GCAG------........................................................................................................................................................24200.0510100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAG---CAACAACAACAA..................................................................................................................................................................................24200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CAACAACAACAACAG---CA..........................................................................................................................................................................20200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAG---CAGCA-----..................................................................................................................................................................20200.0510100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA-----GCAG------CAACAA------------------------CAGCAGC...................................................................................................................22200.0510100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAG---CAGCA-----GC................................................................................................................................................................19200.0510000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CAGCA-----GCAG------CAACAA------------------------CAGCAGCAGCA...............................................................................................................29200.0510001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAG---CAGCA-----GCAG------CAAC....................................................................................................................................................21200.0510010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAACAACAACAACAG---CAGCA-----..................................................................................................................................................................22200.0510010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAGCA-----GCAG------CAACAA------------------------CAGCAGCA..................................................................................................................25200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG---CAACAACAACAACAG---CAGCA-----..................................................................................................................................................................26200.0510010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAG---CAGCA-----G.................................................................................................................................................................20200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAACAACAACAACAG---CAGCA-----GCAG------T.......................................................................................................................................................26200.0510100000000
droPer2
CATGGGGG-CA-----------------GTCCAGCGCACGAATCT------------------GCTGGTGAAC-----------------AGCTCCCTGACG---AATAC---------------------------------------------GGTGGCTGCAGCGGCGGCGGCGGCTGCAGCTG-----------------------------------------------------------------------------CAGTGGCAAG-TAACACG-----TT-------------------------------------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------CAGCAG------CACCACCAACA----------------------------------------GCA------------GCAG---CAGCAGCAGCAGC---------------AACACCAA------------------------------------------------------------------------------------------------------CAGC---AGCAA---CAGCAGCAGCAACACCAACAGCA--------G------CAACAA------------CAA---------CAC---CAACAGCAACA----TTTA------------------------------------CCGCAGCAGC-----ATTTAATTCGGGCGATAC--CTGTATCAAGGTGAGTCGTGATCTCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC-----ATTTAATTCGGGCGATAC--CT........................2311.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC-----ATTTAATTCGGGCGAT..............................2111.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAATTCGGGCGATAC--CT........................2011.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------------------------------------------------------------------------------------------CAGC---AGCAA---CAGCAGCA......................................................................................................................................................................................19200.051001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAACA----------------------------------------GCA------------GCAG---CAGCA..................................................................................................................................................................................................................................................................................................................................................20200.051001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA----------------------------------------GCA------------GCAG---CAGCAGCAGCAGC---------------...........................................................................................................................................................................................................................................................................................................................25200.051001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA------------------------------------------------------------------------------------------------------CAGC---AGCAA---CAGCAGCAGCA...................................................................................................................................................................................23200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCACCAACA----------------------------------------GCA------------GCAG---CA.....................................................................................................................................................................................................................................................................................................................................................20200.051001000
droAna3
GAGCTGAA-CA-----------------GTCA-------------------------TGTGAGGCGGGAGAAC-----------------GGCACCAGTATGTTGCAGCC---------------------------------------------AGTGGTCAC---------------------------------------------------------------------------------------------------------------------------------------AGAGGC--------TACTACGGCGG----------------CA-CTGCA-------------------------------------------------------------------------------------------------------------------------ACATGCCAATCAA-----------------CTGGCCAC----------------------------------------------------------------------------CCAGCAACAGCAATTGCAACAGCAACA------------------------------------------------------------------------------------------------------GCAGCAACAACAGCAG---CAACAG------------CAACA--------G------CAGCAGCAG---------CAG---CAA---------CA------TCACA-----------T------------------------------------------------------------------AGT----------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG------------CAACA--------G------CAGCAGCAG---------CAG---C...............................................................................................................................23200.102020000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA--------G------CAGCAGCAG---------CAG---C...............................................................................................................................18200.102020000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAG---CAACAG------------CAACA--------G------CAGCAGC.................................................................................................................................................28160.061010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAACAG------------CAACA--------G------CAGCAGC.................................................................................................................................................21200.051001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA--------G------CAGCAGCAG---------CAG---C...............................................................................................................................19200.051000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---CAACAG------------CAACA--------G------CAGCAGCA................................................................................................................................................24200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAGCAG---CAAC..........................................................................................................................................................................................19200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA--------G------CAGCAGCAG---------CAG---CAA---------CA------............................................................................................................22200.051000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACA------------------------------------------------------------------------------------------------------GCAGCAACAACAGC...................................................................................................................................................................................................21200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACA------------------------------------------------------------------------------------------------------GCAGCAAC.........................................................................................................................................................................................................19200.051010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------CAGCAGCAG---------CAG---CAA---------CA------TC..........................................................................................................20200.051000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------------------------------------------GCAGCAACAACAGCAG---C.............................................................................................................................................................................................18200.051010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG------------CAACA--------G------CAGCAGCAG---------CA....................................................................................................................................21200.051001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAGCAG---CAACAG------------C...........................................................................................................................................................................20200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACA------------------------------------------------------------------------------------------------------GCAGCAACA........................................................................................................................................................................................................19200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG------------CAACA--------G------CAGCAGCAG---------......................................................................................................................................20200.051001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG------------CAACA--------G------CAGCAGCAG---------C.....................................................................................................................................21200.051000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAG------------CAACA--------G------CAGCAGCAG---------CAG---C...............................................................................................................................25200.051010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------------------------------------------------------------------------------------------------------GCAGCAACAACAGCAG---CA............................................................................................................................................................................................23200.051010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---CAACAG------------CAACA--------G------CAGCAGCAG---------C.....................................................................................................................................26200.051010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG------------CAACA--------G------CAGCAGCAG---------CAG---CA..............................................................................................................................24200.051000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAACAG------------CAACA--------G------CAGCAGCAG---------C.....................................................................................................................................24200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACA------------------------------------------------------------------------------------------------------GCAGCAACAAC......................................................................................................................................................................................................20200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAG---CAACAG------------CA..........................................................................................................................................................................20200.051010000
droBip1
AGCAGGAG-GAACATA--TGTTGGCGTGGTCCTGGCAACATCGTC-AGCAAGTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGC--------GACGGCTGCAG----------------CAGCAGCA-------------------------------------------------------------------------------------------------------------------------GC-----------AACAGCAGTATCAGCAG------CT-------------------------------------------------------------------------GCAGCAGCATC---------------AACAACTGC---------------------------------------------------------------------------------------AGCAGCATCAACAACAGC---AACAG---CATCA---------A---CAACAG-----CAG------CAGCAT---CAACAACAGCAG---C------------A---TCAACA---------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GCCGC----------------------------------------------------------------------------------------ACCAGATGGTCGCCGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGGTTCGCCGGTGATGC--------TTCACCAGCAG----------------CAGCAACA-------------------------------------------------------------------------------------------------------------------------GC-----------ACCTTCAGCAGCAGCAG------CAGCAGCATCA----------------------------------------TCA------------ACAG---CAGCAGCAACACC---------------AACAGCAGC---------------------------------------------------------------------------------------AGCAGCAGCAA---CACC---AGCAA---CAGCA---------G---CAAC-----------------------------------------------ATCAC---CAACAG----CAGCAGCAGCAACATCACCAGC--------AATTTGGC----CAGCAGCAGC---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
ATCACGAG-CAGC--A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACATGAGCAG--------CGGCAACA----TGTCCGCCAGCAACACCAACTCGCAAATCCTGAGTCCCGCTCACCCGGCCGGATTAAATCCGCTTTCCAGTCCCACCTCGCCGTCGGCACTGCTG-----------------------------CTGGCCCACCAGCAACA----------------------------------------TCT------------GCTG---CAGCAGCACCAGC---------------AACAC------------------------------------------------------------------------------------------------------CAGCAGC---AACAG---------------------CAGC--A------G------CAACAG---CAACAGCAGCAG---C------------A---GCAACAAG-----------C-------GGC--------CCTCCAGC----TGGCCGCAG----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
T-CACCAG-CAGC--A------GCAG-----------------------------------------------------------------------------------------------------------------------------------------------CAACAGCA------ACAGAGGAATCTCTACTATGCTAGTGAGCATTATCCAGGAGGCAATGGGGGCAGTGCTGCCGGCGGCAATC------------------------------------------------------------------------------------------------------------------------CGGGCT------------------------------------------------------------------------------------------------------------------------------ACT------A----------------------------------------CTG------------ACAA---CAACACTAGCAACAACATTAGCAGCAACAACA------------------------------------------------------------------------------------------------------CCAACAACAACACCAA---CAACAA------------CACTA--------G------CAACAGCAG---------CAG---C------------AACAACAAGA-------------------------------AGCCTTGGC----TAA-------------------------------------GCAAA----------------SizeHit CountTotal NormTotal
No Reads
droRho1
TCCAGGAG-AAGG----------------------------------------------------------------------------------------------------------------------CGCAGAGCAATTCGGAGCTGCAG-CACG-----------------C-TCACACCAA--------------------------------------------------------------------------------------------------------------------------------G---------------------------------------TTCACCTATGC---CA----G----------------------------------------------------------------------------------------------------------------------------------------------GTCCCTGTTCCACC--------------------------A------------GCGACAACA---GCAGCAGCAACAACAGCAGCAACAGCA------------------------------------------------------------------------------------------------------ACAACAACAGCAGCAG---CAGCAGCAGCAACAACAGCAGC-----------------AG---------------------CAACAACAGCAGCAGCAACTACA---------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CAAG--TG-GAGGACGTCC-------------AGC-------------------------------------------------------------TGGAGATCTCC---GGCGATCGGAGGAGGGGTAGGCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAGC--------CAAGGCTGCAG----------------CAACAGCA-------------------------------------------------------------------------------------------------------------------------GC-----------ATCAGCTGCAACCTCAG------CACCAGCTACA----------------------------------------AGC------------GCTA---CAGCAGCAGCAGC---------------AACAACAGC---------------------------------------------------------------------------------------AGCAGCAGCAACAACAGC---AGCAG---CAGCA---------A---CAACA--------G------CAGCAG------------CAGCAAC------------AACA---GCA---------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AAGAGCTA-CA-----------------GCCA-------------------------ATTTAATTTAAACGCCGCCGCCCCGCCCGCCATTGCATTTGATAGTTTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGAATCCCAGTGGATCGCCGATTCTCG--------ATCCTCTCCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGC------------------------AG---------------------------------------------------------------------------------------------------------CAGCAGC---AACAA---------------------CAGC--AGTCACAG---CAACAACAA------------CAG---CGC---------CA------GGACA-----------T-----GCCGC--------ACTTTGGA----CTTCCGGGTCCT-------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AGCCTGCC-GAACACCATTTCTAT--------------------------------------------------------------------------------------AACGAGCAGCTCGGGAGGAGCCCCGCTGAATTTTGGGGATGCCGCTATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG-------------------------------------------------------------------------------------------------------------------------AC-----------GCCCACTCCGGCGGCCG------CACCTACGCCGC--CCACT------------------------CTTTCGCT--GATTGCTACACC-ACAG---CAACAGTTGCAGA---------------TGCA------------------------------------------------------------------------------------------------------------TC---AGCAA---CAACA---------A---CAACA--A---CAACAACAGCTAC---------------------------------ATCA---AC----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GCCGC----------------------------------------------------------------------------------------ACCAGATGGTCGCCGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGGTTCGCCGGTGATGC--------TTCACCAGCAGCAGCAGCAGCAGCAAC---------------ATCAGCAGCAACAG----------------------------------------------------------------------------------------------------------------------CAGCAACAGCAG------CAGCAGCAGCA----------------------------------------TCA------------ACAG---CAGCAACAGCAGCAAC------------ATCAACAG------------------------------------------------------------------------------------------------------------CAGCAG---CAGCAA------------CATCA--------G------CAGCAGCAG---------CAG------CAACACCAC---CAGCAA----CAGCAGCAGCATCATCACCAGC--------AATTTGGC----CAGCAGCAGC-----AT--------------CCCCATGC----------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
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S2		SRR341118
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CME-L1		V001
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S2		V006
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ML-DmD20-C5		V011
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DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
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S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
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ML-DmD20-C5		V037
S2		V038
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mbn2		V074
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ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
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fGS/OSS		V092
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CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
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ML-DmD16-C3		V132
ML-DmD32		V133
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OSC		V145
S2		V146
S1		V147
1182-2H		V148
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droSim2
GCCGC----------------------------------------------------------------------------------------ACCAGATGGTCGCCGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGGTTCGCCGGTGATGC--------TTCACCAGCAG----------------CAGCAGCA-------------------------------------------------------------------------------------------------------------------------AC-----------ATCAGCAGCAACAGCAG------CAGCAGCAGCA----------------------------------------TCA------------ACAG---CAACAGCAGCAGC---------------AACATCAGC---------------------------------------------------------------------------------------AGCAACAGCAGCAGCAG-----------------------------------------------------------------------------CAACACCAC---CAGCAA----CAGCAGCAGCATCATCACCAGC--------AATTTGGC----CAGCAGCAGC-----AT--------------CCCCATGC----------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAC---CAGCAA----CAGCAGCA...............................................................................................19111.0011000001100000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCATCATCACCAG..................................................................................1840.25100000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAG------CAGCAGCAGCA----------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................25200.10200000000000200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------ACAG---CAACAGCAGCAGC---------------AACAT......................................................................................................................................................................................................................................................................................................................23100.10100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGC---------------------------------------------------------------------------------------AGCAACAGCA.................................................................................................................................................................................................................15200.05100000000001000000
...........................................................................................................................................................................................................................................................................................................................CACCAGCAG----------------CAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCAGCAACAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCAGC---------------------------------------------------------------------------------------AGCAACAGC..................................................................................................................................................................................................................17200.05100000000001000000
..............................................................................................................................................................................................................................................................................................................................CAGCAG----------------CAGCAGCA-------------------------------------------------------------------------------------------------------------------------AC-----------ATCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAACAGCAGCAGC---------------AACA.......................................................................................................................................................................................................................................................................................................................19200.05100000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-----------ATCAGCAGCAACAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000000001000000
droSec2
GCCGC----------------------------------------------------------------------------------------ACCAGATGGTCGCCGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGGTTCGCCGGTGATGC--------TTCACCAGCAG----------------CAGCAGCA-------------------------------------------------------------------------------------------------------------------------AC-----------ATCAGCAGCAACAGCAG------CAGCAGCAGCA----------------------------------------TCA------------ACAG---CAGCAGCAGCAGC---------------AACATCAGC---------------------------------------------------------------------------------------AGCAACAGCAGCAGCAG-----------------------------------------------------------------------------CAACACCAC---CAGCAA----CAGCAGCAGCATCATCACCAGC--------AATTTGGC----CAGCAGCAGC-----AT--------------CCCCATGC----------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------TCA------------ACAG---CAGCAGCAGCAGC---------------AAC........................................................................................................................................................................................................................................................................................................................2440.2510100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCA----------------------------------------TCA------------ACAG---CAGC...................................................................................................................................................................................................................................................................................................................................................2280.1310001
......................................................................................................................................................................................................................................................................................................................................................GCAGCA-------------------------------------------------------------------------------------------------------------------------AC-----------ATCAGCAGCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................20130.0810010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---------------AACATCAGC---------------------------------------------------------------------------------------AGCAAC.....................................................................................................................................................................................................................20130.0810010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------ACAG---CAGCAGCAGCAGC---------------A..........................................................................................................................................................................................................................................................................................................................19200.0510010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---CAGCAA----CAGCAGCAGC.............................................................................................18200.0510010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------ACAG---CAGCAGCAGCAGC---------------AAC........................................................................................................................................................................................................................................................................................................................21200.0510010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAG-----------------------------------------------------------------------------CAACACCA.....................................................................................................................19200.0510010
droYak3
AACACGAA-CAGC--A------ACGG-----------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAACAGCAGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAACATTGGCT------------------------------------------------------------------------------------------------------------------------------ACC------A----------------------------------------GCA------------ACAC---CAGCAGCAGCAGC---------------AACAGCAGCCGCCGTTGATCCTGTCGCAGGCTCTGCTGTCGCCATCGCCGCCGCTCAACGATCAGATCAGCTTGCTATTCCCCAAGTGCCGACCCAAACAGCAGCAGCAACAGC---AACAGCAACA------------G---CAACAG-----CAG------CAACAG------------CAG---CAA---------CAGCAGCAGCA--------------------------------ACTTCAGC----CAG-----------------------------------C----------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGTCGCAGGCTCTGCTGT....................................................................................................................................................................................................................................................................................2311.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGC---AACAGCAACA------------................................................................................................................................................................................21200.10201100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------ACAC---CAGCAGCAGCAGC---------------AA.........................................................................................................................................................................................................................................................................................................................21120.08100001000000
........................GG-----------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAACAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.08101000000000
.........................................................................................................................................................................CAACAGCAACAGCAGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100000010000
...........................................................................................................................................................................ACAGCAACAGCAGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------ACAC---CAGCAGCAGCAGC---------------...........................................................................................................................................................................................................................................................................................................................19200.05100000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACA------------G---CAACAG-----CAG------CAACAG------------......................................................................................................................................23200.05101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG------------CAG---CAA---------CAGCAGCA............................................................................................................19200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACA------------G---CAACAG-----CAG------CA......................................................................................................................................................19200.05101000000000
..........................................................................................................................................................................AACAGCAACAGCAGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100100000000
droEre2
ACAAGGAG-CACG---AGCGAGAGAAGGCGAAGGAGAAAGCAAACGAAGAGGAGG----------------------------------------------------------------------------CCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCGACGATTC------CGACGACGACGTCGTGGTTGTGCT-------------------CGAAGGCTGCGAAGGCAACGCC---------AGCAGCAGCAGC---------------AG---------------------------------------------------------------------------------------------------------CAGCAGC---AACAG---CA------------G---CAGCA-----ACAG------CAACGCCAG---------CAG---C------------AACA---ACCAA---------------------------AAGGCCGCGGC----CA-----------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCC---------AGCAGCAGCAGC---------------AG---------------------------------------------------------------------------------------------------------CAGCA...........................................................................................................................................................................................................2390.1110100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------AG---------------------------------------------------------------------------------------------------------CAGCAGC---AACAG---CA------------G---C...........................................................................................................................................................................19200.0510100000

Generated: 05/16/2015 at 10:02 PM