ID:

dvi_9275

 Coordinate:

scaffold_12928:7458481-7458631 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.5 -7.4 -7.3

Flybase annnotation

exon [dvir_GLEANR_16871:2]; CDS [Dvir\GJ16365-cds]; intron [Dvir\GJ16365-in]

Repeatable elements

NameClassFamilyStrand
(ATTG)nSimple_repeatSimple_repeat+
mature
star
  1. dvi_9275  scaffold_12928:7458517-7458536 -
  2. scaffold_13047:11383918-11383937 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTGCCGCTTTGTTTTCTTCTTCTTTTCTCTCTTATTTTTCTTTTTGATTTTTCGAAATTCGTTTTGTTCATCATCGTTATCGTTATATTGTCATTGCACACACATCACGCACCAATCGAACAATCGAACAATCGAACAATTGAACAATCGAACAATTGAACAATCGAACAATTGACAATCGATCAATTTGAAAAAACCCAGGATCTTACATTCCAGGGCTCGGGCTATCCAATGTCACCATTGGGTGTCGC
*********************************************************************************************************************************..((((...(((((....((((.((((((..........))))))....)))))))))))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 M047
female body
 SRR060672
9x160_females_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 M061
embryo
 SRR060656
9x160_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060671
9x160_males_carcasses_total
 V116
male body		 SRR060659
Argentina_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060661
160x9_0-2h_embryos_total
 M028
head
 SRR060665
9_females_carcasses_total
 SRR060675
140x9_ovaries_total
 V047
embryo
.............................................................................................................................................................................................................TTACATTCCAGGGCTCGGGCT......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CGATCAATTTGAAAAAACCCAG.................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TGCTTTTTGATTCTTCGA.................................................................................................................................................................................................... 18 2 20 1.00 20 0 7 0 0 0 0 0 0 0 3 0 4 3 0 0 0 1 0 1 1
.....................................................................................................................................................................................................................CAGGGCTCGGGCTATCCAA................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ATTCCAGGGCTCGGGCTATCCAA................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CTTACATTCCAGGGCTCGGGC.......................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AATGTCACCATTGGGTGTC.. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GCTATCCAATGTCACCATTGGGT..... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GATCTTACATTCCAGGGCTCGGG........................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TTGCTTTTTGATTCTTCGA.................................................................................................................................................................................................... 19 2 20 0.70 14 0 0 0 0 0 0 11 0 0 0 0 0 0 2 0 0 0 1 0 0
.................................................................................................................................AATCGAACAATTGAACAATC...................................................................................................... 20 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................AATCGAACAATTGAACAATC...................................................................................... 20 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TTTCTTTTTGATTCTTCG..................................................................................................................................................................................................... 18 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................TTGCTTTTTGATTTTTCGAT................................................................................................................................................................................................... 20 2 17 0.24 4 0 0 0 1 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................TTTCTTTTTGATTCTTCGAT................................................................................................................................................................................................... 20 2 12 0.17 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................CTTTTTGATTCTTCGA.................................................................................................................................................................................................... 16 1 19 0.16 3 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATCAAACAATCGAGCAATCGT.................................................................................................................... 21 3 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TCCTTTTTGATTCTTCGA.................................................................................................................................................................................................... 18 2 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................ATTTCTTTTTGATTCTTCG..................................................................................................................................................................................................... 19 2 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TCTCGGACCAATCGAACCA................................................................................................................................ 19 3 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................CATCTAGGACCAATCGAAC.................................................................................................................................. 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................CTTTTTGATTCTTCGATAT................................................................................................................................................................................................. 19 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ACTGATCGGGCTATCCAAT.................. 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................TTGCTTTTTGATTTTTCGATGT................................................................................................................................................................................................. 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................ATTGCTTTTTGATTCTTCGAA................................................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TTGCTTTTTGATTCTTCG..................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GATGAATTTGAAAAAGCGCA................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................GCTTTTTGATTCTTCGAA................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AACGGCGAAACAAAAGAAGAAGAAAAGAGAGAATAAAAAGAAAAACTAAAAAGCTTTAAGCAAAACAAGTAGTAGCAATAGCAATATAACAGTAACGTGTGTGTAGTGCGTGGTTAGCTTGTTAGCTTGTTAGCTTGTTAACTTGTTAGCTTGTTAACTTGTTAGCTTGTTAACTGTTAGCTAGTTAAACTTTTTTGGGTCCTAGAATGTAAGGTCCCGAGCCCGATAGGTTACAGTGGTAACCCACAGCG
**************************************************..((((...(((((....((((.((((((..........))))))....)))))))))))))..........********************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060685
9xArg_0-2h_embryos_total
 V047
embryo
 SRR060666
160_males_carcasses_total
 SRR060664
9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060658
140_ovaries_total
 SRR060668
160x9_males_carcasses_total
 SRR060678
9x140_testes_total
 SRR060669
160x9_females_carcasses_total
...........................AGAGATTAAAAAGAAAAAC............................................................................................................................................................................................................. 19 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
........................................................TCAGCAAAGCAAGTAGTAG................................................................................................................................................................................ 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.......................................................TTAAGCAAGACATGTAGTAGG............................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................GCGTGGTTAGCTGGTGAG.............................................................................................................................. 18 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0
.............AAGAAGGAGAAAGGAGAGAA.......................................................................................................................................................................................................................... 20 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0
............AAAGCAGAAGAAAGGAGAG............................................................................................................................................................................................................................ 19 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0
...............................................................AACAAGCAGTGGCAATAG.......................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................GCGTTGTTAGCTTGTCAG.............................................................................................................................. 18 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0
...........................................................GCAAAGGAAGTAGTAGCTATA........................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................AAGGGCCCGAGGTCGATAG...................... 19 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................GTTAACTGTTAGCCCGTTA................................................................ 19 2 9 0.11 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................AGCTTGTTAACTCGATAGC..................................................................................... 19 2 12 0.08 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TAGTTTGTTAGCTCGTTAGCA.................................................................................................................... 21 3 12 0.08 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................AGCTTGTTAACTCGATAGC..................................................................................................... 19 2 12 0.08 1 0 0 1 0 0 0 0 0 0 0
.............................................................AGACCAAGTAGTAGCATTA........................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:7458431-7458681 - dvi_9275 TTGCCGCTTTGTTT--TCTTCTTCTT--TTCTCTCTTA----TTTT------------TCT-------T-TTT------GATTTTTCGAAA---------TTCGTTTTGT-TCA-----------------------------------------------T---------CATCGTTA------TCGTTATATTGTCAT--------------TGCA-CACACATCACG---CACCAATCGAACAATCGAACAATCGAA-----CAATTG-AACAA---------TCGAACAATTGAAC------------------------AATCGAAC-----------------------------------AATTG-------------------------------------------------------------------------------AC--A-ATCGA------T--CA-------ATTTGAAAAAACCCAGGATCTTACATTCCAGGGCTCGGG---CTATCCAATGTCACCATTGG---GTGTCGC
droMoj3 scaffold_6473:2582521-2582749 + TTATCGCTTTTTTT--C-TTTTCTC--------TCCATTCTATTT------------TTCT-------T-TTTTTTTTC--------CAAATTTTTAT-TTTGAATTCGT-T----------------ACA-----------------------------AT---------CATCGTTATA----TCGTTA--TTGTCAT--------------TGCA-CATACACCACG---CACGAATCGA----------------------------------------------------------------------------------------------------------------------------------ACAATCGACCAACAATCG--------------AACCAT------------------------------------CGA-----A-ATCGT------T--CAATTTGAAA-ACCAACC---AAAGGATCTTACATTCCAGGGCTCGGG---CTATCCAATGTCACCGTTGG---GTGTGGC
droGri2 scaffold_15081:3239528-3239799 + TTGTCGCTTTGTTT--TCTTCTCCT---------------------CCTCTTAATTTTTTT-------T-TTATTTTCT--------------------TTTTATTTTCT-TTCTAATC-----G------------------------TTTTCATCATTAT---CATCATCATCGTTA------TCGTTA--TTGCCATCATCTAATAATCAATGCACCACACACTACG---CACT-------------------------------------------------------------GC---------------------CAACAACAAAAAA------------ACCGAATCGTTATCGATAACCGATAT-CCGATA---------------------A-------------------------------TTCGATGAATT------GAAT--G-A---A------A-------------ACGA-AC---ACAGGATCTTACATTCCAGGGCTCGGGAGGGTATCCGATGTCACCATTGA---GTGGCGC
droWil2 scf2_1100000004963:2952887-2953086 - TTTTTTTTTGTTTT--TCTTTTTGGT------T-T----------------------TTAT-------T-TTGTTTTTC--------------------TTTTATGTTT------AATT-----T----------------TT----------CAT--------------------------------------------------------AACGCGCC-CACGCTGCTGATTACT----GC--------------AAA-----C-----CACAAA---------TCAATCCAC---------------------------------------------------------------------------------------AACAAATCG--------------AA-------------------------ATCG---------ATCGAAAT--G-GTGAA------A-----------ATCTCAA-T---GCAGGATCTTACATTCCAGGGCTCGGGTGGTTATCCCATGTCACCACTGG---GTGTGGC
dp5 XL_group1e:6583236-6583475 - dps_2720 ATGC---TTTTTGC--TTGTTTCTTTTCTGCTTTCTTT----TCTTCCTTTTAC-------------------T-----GATTTCT---------TTT-GTTTATGTTGTTTTGCACTCTACTCGAACAACCAA---------------------------------------------------------------------------------------------------------------------------CAA-----CAAC----------------------CAACAACA------------------ACAACAACAACAACAAA---CAACAACTAAATGCATC----------------------------------------------------ATCATCAACATCCTACAACAT------------------------CC--T-ACGGGCATCCGAACCG-------CACTGAACC---ACAGGATCTTACATTCCAGGGCTCGGG---TTATGCGATGTCACCATCGATGGG------
droPer2 scaffold_21:1595482-1595709 - ATGC---TTTTTGC--TTGTTTCTTTTATGCTTTCTTT----TCTTCCTTTTAC-------------------T-----GATTTCT---------TTC-GTTTATGTTGTTTTGCACTCTACTCGAACAAC------------------------------------------------------------------------------------------------------------------------------CAA-----CAAC----------------------CAACAACA--------------A---ACAACAACAACAACAAA-------------ATGCATC----------------------------------------------------ATCATCAACATCCTACAACAT------------------------CC--T-ACGGGCATCCGAACCG-------CACTGAACC---ACAGGATCTTACATTCCAGGGCTCGGG---TTATGCGATGTCACCATCGATGGG------
droAna3 scaffold_13117:2160382-2160639 - TTT-CGCTT--TGCTTT-CTTTATTT-----TTTCTTT----TCTTTTTT--------TCA------------TTAT--CCTT------------TTGGCCCGATTTTGT-TTGCACTC-----CACCACC-----------------------------AC---CACCACCA------CGTCCAACAACA--CCACCAC---------------------------------------------------------CA-----------------------------------C------------------------AACAACAACAACA-----------------------------------AACCAACCAACCAACCAACAACTACAAC----AAA-CAA--AATTCA-------------CATCATCCAACGGATA------TAAC--G-ATGGCCATC--A--TC-------CACTGAA-A---ACAGGATCTTACATTCCAGGGCTCGGG---CTATACCATGTCGCCGCTGG---GCGTCGC
droBip1 scf7180000395304:31742-32002 + TTT-CGCTT--TGCTTT-CTTTATG--------TCTTT--------------------TCTTTTTTGAT-TTC------AATT------------CTGCCCCGATTTTGT-TTGCACC----TCCACCAAC-----------------------------ACCACCACCACCA------CGTCC------A--CGACC------------------------------------------------------------------------------ATCATGTCCACCAACCA-------------CCACAACAACAACAACAACAACAACA-----------------------------------AACAA-CAAACA---------------------AA-CAAACAATCCA-------------CATCATTCGATGGATA------AAAC--G-ATGGGAATC--A--TC-------AACTGAA-A---ACAGGATCTTACATTCCAGGGCTCGGG---CTATACCATGTCGCCGCTGG---GCGTTGC
droKik1 scf7180000302398:486762-486956 - ATGCCGCTT-TTGC--TCCTTTATTTC----GTTCTTT--------------------TCT-------TTTTCTT---CCAT-------------TAC-GTTGATTTCGT-TTGCACTC-----GATCAATC----AATCAATCAATCGAACA--------C-----------------------------------------------------------------------------------------------CAA-----T-----CACCAA---------TCAATCAACCAAAC------------------------CAACC--------------------------------------------------------------------------------------------------------------------------AC--GAATGGG------A--TC-------TTCTGAACCA--ACAGGATCTTACATTCCAGGGCTCGGG---CTACACACTGTCGCCATTGG---GCGC---
droFic1 scf7180000454077:2060054-2060324 + ATGCCGCTTTTTGC--TCGTTTATTT-----TT-------------------------TCT-------T-TTCTTTTGC--------------------GTTGATTTTGT-TTGCACT--ACTCAACCAACCAACCAATCAATCAATCAATCAAACGAAC--CAC--------------------------------------------------------------------------------------------CAA-----CCACCACACGAA---------TCAATCAACAACAC---------------------CACCAA---CCAACCA-----A----------CT---ACAACAACAAATCA-CCAATCA------------ACCAA--CAACCAACTCATCAT-------------------T---------AAACCGAAACGTG-ATGGG------A--TC-------TTCTGAACC---ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTGG---GCGTTTC
droEle1 scf7180000491006:1443701-1443968 - ATGCTGCTTTTTGC--TTGTTTATTT------TTCTTT----T--------------TTCT-------T-TTCTTTTGC--------------------GTTGATTTTGT-TTGCACTC-----AACCAATC----AATCGTTCGTTCGATCAAATCAACAC-----------------------------------------------------------------------------------------------CAC-----CAACCACACCAATCAAATCAATCAATCAACAACC--------------A---ACACCACCAACAACAAA-------------CC------------------AACTA-CCAATCA------------ACCAC--CAACCAACTCATCA------------------------------AAACCGAAAC--G-ATGGG------A--TC-------TTCTCAATC---ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTGG---GCGTCTC
droRho1 scf7180000763611:274366-274604 + AAGCCGCTTTTTGC--TTGTTTTATT------TTCTTT--------------------TCT-------T-TTCTTTTGC--------------------ATTGATTTTGC-TTGCACTC-----AACCA--------ATCAATCGATTGATCAAATCAACAC-----------------------------------------------------------------------------------------------CAC-----CAACCACACCAA---------TCAACCAACAACAC---------------------CACCAACAACA-----------------------------------AACCA-CCAATA---------------------AATCAACTCATCAA-----------------------------AAACCAAAAC--G-ATGGG------T--TC-------TTCTGAATC---ACAGGATCTTACATTCCAGGGCTCGGG---ATACAACATGTCGCCGCTGG---GCGTCTC
droBia1 scf7180000301623:228744-229024 + ATTCCGCCTTTGGC--TCGTTTATTT------T-------------------------TCT-------T-TTATTTTGC--------------------GTTGATTTTGC-TTGCACTC-----AATC--------AATCAATCGATCGATCAACTCAACACCACCAC-----------------------------------------------------------------------------------------CAC-----CAACCACACCAA---------TCAATCAACAACACCAACTACAACAACAACAACAACAACAACAACA----------ACTA-------CTACAACAACAACAAACCA-CCAATC---------------------AACCAACTCATCAA-------------------CC--------AAACCGAATC--G-ATGGG------A--CG-------TTCTGAACC---ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTGG---GCGTCTC
droTak1 scf7180000415141:16362-16617 - TTGCCGCTTTTTGC--TCGTTTATTT------TTCTTT----T--------------CTCT-------T-TTATTTTGC--------------------ATTGATTTTGT-TTGCACTC-----AACCAATC----AATCAATCGATCGATCAAATCAACACCACCAA-----------------------------------C-----------------------------------------------------CAACCAACCAACCACACCAA---------TCAATCAACAACAA---------------CACCAACAACAACAACA-----------------------------------AAACG-AAAACC---------------------AACCAACTCATCAA-----------------------------AAACCGAATC--G-ATGGG------A--TC-------TT----------ACAGGATCTTACATTCCAGGGCTCGGG---ATACAACATGTCGCCGCTGG---GCGTCTC
droEug1 scf7180000409064:24839-25053 - ATTCCGCTTTTTGC--TCGTTTATTT------T-------------------------T-------------CTTTTGC--------------------GT----TTTTT-TTGCATTC-----AACCA------------ATCGATCGATTAAATCAAAAC-----------------------------------------------------------------------------------------------CAC-----CAATTACACCAA---------CCAACCAACAACAC------------------------C---AACA-----------------------------------AACCA-CCAATC---------------------AACAAACTCATCTA-----------------------------AAATCGAAAC--G-ATGGG------A--TC-------TTTTGAACC---ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTGG---GCGTCTC
dm3 chrX:7947278-7947520 - ATGCTGCTTTTTGC--TCGTTTTATT------T-------------------------TCT-------TTTTCTTTTGC--------------------GTTGATTTTGT-TTGCACTC-----AACCAACCAACCAATCAATCGATCGATCAAATCAACAC-----------------------------------------------------------------------------------------------CAA-----CAACCACACCAA---------TCAATCAACAACAC---------------------CAACAACAACA-----------------------------------AACCA-CAAATC---------------------AACCAAATCATCAA-----------------------------AAACCGAAAC--G-ATGGG------T--CA-------TTCTGAACC---ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTAG---GCGTCTC
droSim2 x:7519836-7520070 - ATGCTGCTTTTTGC--TCGTTTTATT------T-------------------------TCT-------T-TTCTTTTGC--------------------GTTGATTTTGT-TTGCACTC-----AACCAACC----AATCAATCGATCGATCAAATCAACAC-----------------------------------------------------------------------------------------------CAA-----CAACCACACCAA---------TCAATCAACAACAC------------------------CAACAACA-----------------------------------AACCA-CAAATC---------------------AACCAAATCATCAA-----------------------------AAACCGAAAC--G-ATGGG------T--CA-------TTCTGAACC---ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTAG---GCGTCTC
droSec2 scaffold_44:31602-31835 - ATGCTGCTT-TTGC--TCGTTTTATT------T-------------------------TCT-------T-TTCTTTTGC--------------------GTTGATTTTGT-TTGCACTC-----AACCAACC----AATCAATCGACCGATCAAATCAACAC-----------------------------------------------------------------------------------------------CAA-----CAACCACACCAA---------TCAATCAACAACAC------------------------CAACAACA-----------------------------------AACCA-CAAATC---------------------AACCAAATCATCAA-----------------------------AAACCGAAAC--G-ATGGG------T--CA-------TTCTGAACC---ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTAG---GCGTCTC
droYak3 X:13364810-13365059 + ATGCTGCTTTTTGC--TCGTTTATTT------T-------------------------TCT-------T-TTCTTTTGC--------------------GTTGATTTTGT-TTGCACTC-----AACCAACC----AATCAATCGATCGATCAAATCAACACCAACAA-----------------------------------------------------------------------------------------CAA-----CCACAACACCAA---------TCAATCAACAACAC------------------------CAACAACA-----------------------------------AACCA-CAAATCA------------ACCAAATCAACCAAATCATCAA-----------------------------AAACCGAAAC--G-ATGGG------A--CA-------TTCTGAACC---ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTTG---GCGTCTC
droEre2 scaffold_4690:16856168-16856406 - ATGCTGCTTTTTGC--TCGTTTATTT------T-------------------------TCT-------T-TTCTTTTGC--------------------GTTGATTTTGT-TTGCACTC-----AACCAACCAATAAATCAATCGATCGATCAAATCAACAC-----------------------------------------------------------------------------------------------CAA-----CAACCACACCAA---------TCAATCAACAACAC------------------------CAACAACA-----------------------------------AACCA-CAAATC---------------------AACCAAATCATCAA-----------------------------AAACCGAAAC--G-ATGGG------A--CA-------TTCTGAACC---ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTAG---GCGTCTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTGCCGCTTTGTTT--TCTTCTTCTT--TTCTCTCTTA----TTTT------------TCT-------T-TTT------GATTTTTCGAAA---------TTCGTTTTGT-TCA-----------------------------------------------T---------CATCGTTA------TCGTTATATTGTCAT--------------TGCA-CACACATCACG---CACCAATCGAACAATCGAACAATCGAA-----CAATTG-AACAA---------TCGAACAATTGAAC------------------------AATCGAAC-----------------------------------AATTG-------------------------------------------------------------------------------AC--A-ATCGA------T--CA-------ATTTGAAAAAACCCAGGATCTTACATTCCAGGGCTCGGG---CTATCCAATGTCACCATTGG---GTGTCGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATTCCAGGGCTCGGG---CT............................2111.001100000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA------T--CA-------ATTTGAAAAAACCCAG........................................................2211.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGCTCGGG---CTATCCAA......................1911.001100000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAGGGCTCGGG---CTATCCAA......................2311.001100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACATTCCAGGGCTCGGG---C.............................2111.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTCACCATTGG---GTGTC..1911.001000000100000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CTATCCAATGTCACCATTGG---GT.....2311.001000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTACATTCCAGGGCTCGGG---..............................2311.001000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................AATCGAA-----CAATTG-AACAA---------TC........................................................................................................................................................................................................................................................................2030.331001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................AA---------TCGAACAATTGAAC------------------------AATC................................................................................................................................................................................................................................2030.331001000000000000000000000000000000000000000000000000000000000000
droMoj3
TTATCGCTTTTTTT--C-TTTTCTC--------TCCATTCTATTT------------TTCT-------T-TTTTTTTTC--------CAAATTTTTAT-TTTGAATTCGT-T----------------ACA-----------------------------AT---------CATCGTTATA----TCGTTA--TTGTCAT--------------TGCA-CATACACCACG---CACGAATCGA----------------------------------------------------------------------------------------------------------------------------------ACAATCGACCAACAATCG--------------AACCAT------------------------------------CGA-----A-ATCGT------T--CAATTTGAAA-ACCAACC---AAAGGATCTTACATTCCAGGGCTCGGG---CTATCCAATGTCACCGTTGG---GTGTGGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGGGCTCGGG---CTATC.........................1912.002200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGG---CTATCCAATGTCACCGTTGG---.......2311.001100000
droGri2
TTGTCGCTTTGTTT--TCTTCTCCT---------------------CCTCTTAATTTTTTT-------T-TTATTTTCT--------------------TTTTATTTTCT-TTCTAATC-----G------------------------TTTTCATCATTAT---CATCATCATCGTTA------TCGTTA--TTGCCATCATCTAATAATCAATGCACCACACACTACG---CACT-------------------------------------------------------------GC---------------------CAACAACAAAAAA------------ACCGAATCGTTATCGATAACCGATAT-CCGATA---------------------A-------------------------------TTCGATGAATT------GAAT--G-A---A------A-------------ACGA-AC---ACAGGATCTTACATTCCAGGGCTCGGGAGGGTATCCGATGTCACCATTGA---GTGGCGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TTTTTTTTTGTTTT--TCTTTTTGGT------T-T----------------------TTAT-------T-TTGTTTTTC--------------------TTTTATGTTT------AATT-----T----------------TT----------CAT--------------------------------------------------------AACGCGCC-CACGCTGCTGATTACT----GC--------------AAA-----C-----CACAAA---------TCAATCCAC---------------------------------------------------------------------------------------AACAAATCG--------------AA-------------------------ATCG---------ATCGAAAT--G-GTGAA------A-----------ATCTCAA-T---GCAGGATCTTACATTCCAGGGCTCGGGTGGTTATCCCATGTCACCACTGG---GTGTGGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCTTACATTCCAGGGCTCGGG.................................2612.00200110
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--G-GTGAA------A-----------ATCTCAA-T---GCAGGA......................................................2311.00100001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACATTCCAGGGCTCGG..................................1911.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAGGGCTCGGGTGGT.............................1911.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTACATTCCAGGGCTCG...................................2111.00100010
....TTTTTGTTTT--TCTTTTTGGT------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.20100010
dp5
ATGC---TTTTTGC--TTGTTTCTTTTCTGCTTTCTTT----TCTTCCTTTTAC-------------------T-----GATTTCT---------TTT-GTTTATGTTGTTTTGCACTCTACTCGAACAACCAA---------------------------------------------------------------------------------------------------------------------------CAA-----CAAC----------------------CAACAACA------------------ACAACAACAACAACAAA---CAACAACTAAATGCATC----------------------------------------------------ATCATCAACATCCTACAACAT------------------------CC--T-ACGGGCATCCGAACCG-------CACTGAACC---ACAGGATCTTACATTCCAGGGCTCGGG---TTATGCGATGTCACCATCGATGGG------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACATTCCAGGGCTCGG..................................1911.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGGGCTCGGG---TTATGCGATGTC..................2611.0010001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGCTCGGG---TTATGCGATGTC..................2311.0010000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAACCG-------CACTGAACC---ACAG........................................................2111.0010000001000
.................................................................................................................................ACCAA---------------------------------------------------------------------------------------------------------------------------CAA-----CAAC----------------------CAACAAC..............................................................................................................................................................................................................................................................1940.2510100000000
droPer2
ATGC---TTTTTGC--TTGTTTCTTTTATGCTTTCTTT----TCTTCCTTTTAC-------------------T-----GATTTCT---------TTC-GTTTATGTTGTTTTGCACTCTACTCGAACAAC------------------------------------------------------------------------------------------------------------------------------CAA-----CAAC----------------------CAACAACA--------------A---ACAACAACAACAACAAA-------------ATGCATC----------------------------------------------------ATCATCAACATCCTACAACAT------------------------CC--T-ACGGGCATCCGAACCG-------CACTGAACC---ACAGGATCTTACATTCCAGGGCTCGGG---TTATGCGATGTCACCATCGATGGG------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCGAACCG-------CACTGAACC---ACA.........................................................2312.002200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACATTCCAGGGCTCG...................................1821.503300000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC--T-ACGGGCATCCGAACCG-------CACTGAAC................................................................2711.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCGAACCG-------CACTGAACC---............................................................2011.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACATTCCAGGGCTCGGG---TTATGC........................2620.501001000
droAna3
TTT-CGCTT--TGCTTT-CTTTATTT-----TTTCTTT----TCTTTTTT--------TCA------------TTAT--CCTT------------TTGGCCCGATTTTGT-TTGCACTC-----CACCACC-----------------------------AC---CACCACCA------CGTCCAACAACA--CCACCAC---------------------------------------------------------CA-----------------------------------C------------------------AACAACAACAACA-----------------------------------AACCAACCAACCAACCAACAACTACAAC----AAA-CAA--AATTCA-------------CATCATCCAACGGATA------TAAC--G-ATGGCCATC--A--TC-------CACTGAA-A---ACAGGATCTTACATTCCAGGGCTCGGG---CTATACCATGTCGCCGCTGG---GCGTCGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCATGTCGCCGCTGG---GC.....2011.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATC--A--TC-------CACTGAA-A---ACAG........................................................2011.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGG---CTATACCATGTCGCCGCTGG---GC.....2611.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATTCCAGGGCTCGGG---C.............................1911.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTACATTCCAGGGCC.....................................1911.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGG---CTATACCATGTCGCCGCTGG---GCG....2711.001100000
...............................................................................................................................................................................................................................................................................................................................AACAACAACAACA-----------------------------------AACCAAC..................................................................................................................................................................................2030.331010000
................................................................................................................................................................................................................................................................................................................................ACAACAACAACA-----------------------------------AACCAAT..................................................................................................................................................................................19130.081010000
droBip1
TTT-CGCTT--TGCTTT-CTTTATG--------TCTTT--------------------TCTTTTTTGAT-TTC------AATT------------CTGCCCCGATTTTGT-TTGCACC----TCCACCAAC-----------------------------ACCACCACCACCA------CGTCC------A--CGACC------------------------------------------------------------------------------ATCATGTCCACCAACCA-------------CCACAACAACAACAACAACAACAACA-----------------------------------AACAA-CAAACA---------------------AA-CAAACAATCCA-------------CATCATTCGATGGATA------AAAC--G-ATGGGAATC--A--TC-------AACTGAA-A---ACAGGATCTTACATTCCAGGGCTCGGG---CTATACCATGTCGCCGCTGG---GCGTTGCSizeHit CountTotal NormTotal
No Reads
droKik1
ATGCCGCTT-TTGC--TCCTTTATTTC----GTTCTTT--------------------TCT-------TTTTCTT---CCAT-------------TAC-GTTGATTTCGT-TTGCACTC-----GATCAATC----AATCAATCAATCGAACA--------C-----------------------------------------------------------------------------------------------CAA-----T-----CACCAA---------TCAATCAACCAAAC------------------------CAACC--------------------------------------------------------------------------------------------------------------------------AC--GAATGGG------A--TC-------TTCTGAACCA--ACAGGATCTTACATTCCAGGGCTCGGG---CTACACACTGTCGCCATTGG---GCGC---SizeHit CountTotal NormTotal
No Reads
droFic1
ATGCCGCTTTTTGC--TCGTTTATTT-----TT-------------------------TCT-------T-TTCTTTTGC--------------------GTTGATTTTGT-TTGCACT--ACTCAACCAACCAACCAATCAATCAATCAATCAAACGAAC--CAC--------------------------------------------------------------------------------------------CAA-----CCACCACACGAA---------TCAATCAACAACAC---------------------CACCAA---CCAACCA-----A----------CT---ACAACAACAAATCA-CCAATCA------------ACCAA--CAACCAACTCATCAT-------------------T---------AAACCGAAACGTG-ATGGG------A--TC-------TTCTGAACC---ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTGG---GCGTTTCSizeHit CountTotal NormTotal
No Reads
droEle1
ATGCTGCTTTTTGC--TTGTTTATTT------TTCTTT----T--------------TTCT-------T-TTCTTTTGC--------------------GTTGATTTTGT-TTGCACTC-----AACCAATC----AATCGTTCGTTCGATCAAATCAACAC-----------------------------------------------------------------------------------------------CAC-----CAACCACACCAATCAAATCAATCAATCAACAACC--------------A---ACACCACCAACAACAAA-------------CC------------------AACTA-CCAATCA------------ACCAC--CAACCAACTCATCA------------------------------AAACCGAAAC--G-ATGGG------A--TC-------TTCTCAATC---ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTGG---GCGTCTCSizeHit CountTotal NormTotal
No Reads
droRho1
AAGCCGCTTTTTGC--TTGTTTTATT------TTCTTT--------------------TCT-------T-TTCTTTTGC--------------------ATTGATTTTGC-TTGCACTC-----AACCA--------ATCAATCGATTGATCAAATCAACAC-----------------------------------------------------------------------------------------------CAC-----CAACCACACCAA---------TCAACCAACAACAC---------------------CACCAACAACA-----------------------------------AACCA-CCAATA---------------------AATCAACTCATCAA-----------------------------AAACCAAAAC--G-ATGGG------T--TC-------TTCTGAATC---ACAGGATCTTACATTCCAGGGCTCGGG---ATACAACATGTCGCCGCTGG---GCGTCTCSizeHit CountTotal NormTotal
No Reads
droBia1
ATTCCGCCTTTGGC--TCGTTTATTT------T-------------------------TCT-------T-TTATTTTGC--------------------GTTGATTTTGC-TTGCACTC-----AATC--------AATCAATCGATCGATCAACTCAACACCACCAC-----------------------------------------------------------------------------------------CAC-----CAACCACACCAA---------TCAATCAACAACACCAACTACAACAACAACAACAACAACAACAACA----------ACTA-------CTACAACAACAACAAACCA-CCAATC---------------------AACCAACTCATCAA-------------------CC--------AAACCGAATC--G-ATGGG------A--CG-------TTCTGAACC---ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTGG---GCGTCTCSizeHit CountTotal NormTotal
No Reads
droTak1
TTGCCGCTTTTTGC--TCGTTTATTT------TTCTTT----T--------------CTCT-------T-TTATTTTGC--------------------ATTGATTTTGT-TTGCACTC-----AACCAATC----AATCAATCGATCGATCAAATCAACACCACCAA-----------------------------------C-----------------------------------------------------CAACCAACCAACCACACCAA---------TCAATCAACAACAA---------------CACCAACAACAACAACA-----------------------------------AAACG-AAAACC---------------------AACCAACTCATCAA-----------------------------AAACCGAATC--G-ATGGG------A--TC-------TT----------ACAGGATCTTACATTCCAGGGCTCGGG---ATACAACATGTCGCCGCTGG---GCGTCTCSizeHit CountTotal NormTotal
No Reads
droEug1
ATTCCGCTTTTTGC--TCGTTTATTT------T-------------------------T-------------CTTTTGC--------------------GT----TTTTT-TTGCATTC-----AACCA------------ATCGATCGATTAAATCAAAAC-----------------------------------------------------------------------------------------------CAC-----CAATTACACCAA---------CCAACCAACAACAC------------------------C---AACA-----------------------------------AACCA-CCAATC---------------------AACAAACTCATCTA-----------------------------AAATCGAAAC--G-ATGGG------A--TC-------TTTTGAACC---ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTGG---GCGTCTCSizeHit CountTotal NormTotal
No Reads
dm3
ATGCTGCTTTTTGC--TCGTTTTATT------T-------------------------TCT-------TTTTCTTTTGC--------------------GTTGATTTTGT-TTGCACTC-----AACCAACCAACCAATCAATCGATCGATCAAATCAACAC-----------------------------------------------------------------------------------------------CAA-----CAACCACACCAA---------TCAATCAACAACAC---------------------CAACAACAACA-----------------------------------AACCA-CAAATC---------------------AACCAAATCATCAA-----------------------------AAACCGAAAC--G-ATGGG------T--CA-------TTCTGAACC---ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTAG---GCGTCTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTACATTCCAGGGCTCG...................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTCCAGGGCTCGGG---ATAC..........................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATTCCAGGGCTCGG..................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGAAAC--G-ATGGG------T--CA-------TTCTGAACC---ACAG........................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................TTTGC--------------------GTTGATTTTGT-TTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATTCCAGGGCTCGGG---ATACAATA......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTACATTCCAGGGCTCG...................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGG---ATACAATATGTCGC................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................A-CAAATC---------------------AACCAAATCATCA...........................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGGG---ATACAATATGTCGC................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGGCTCGGG---ATACAATA......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTACATTCCAGGGCTCGGG---..............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TGT-TTGCACTC-----AACCAACCAACCAATCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAGGGCTCGGG---ATAC..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................ACCAACCAACCAATCAATCGATCGAT.................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATATGTCGCCGCTAG---GCGTC..2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAGGGCTCGGG---ATACAATATGTCGC................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATTCCAGGGCTCGGG---A.............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCTCGGG---ATACAATATG....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................CAATCGATCGATCAAATCAACAC-----------------------------------------------------------------------------------------------C......................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGGGCTCGGG---ATACA.........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATTCCAGGGCTCGGG---ATACAATA......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................AATCAATCGATCGATCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTCCAGGGCTCGGG---ATACAATATGA...................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACATTCCAGGGCTCGGG---..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCAGGGCTCGGG---ATAC..........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................CTTTTGC--------------------GTTGATTTTGT-TTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTACATTCCAGGGCTCGGG---T.............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTCCAGGGCTCGGG---ATACAAT.......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCTTACATTCCAGGGCTCGG..................................2511.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACATTCCAGGGCTCGG..................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAC--G-ATGGG------T--CA-------TTCTGAACC---A...........................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAAC--G-ATGGG------T--CA-------TTCTGA..................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGCTCGGG---ATACAATATGTCGC................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
ATGCTGCTTTTTGC--TCGTTTTATT------T-------------------------TCT-------T-TTCTTTTGC--------------------GTTGATTTTGT-TTGCACTC-----AACCAACC----AATCAATCGATCGATCAAATCAACAC-----------------------------------------------------------------------------------------------CAA-----CAACCACACCAA---------TCAATCAACAACAC------------------------CAACAACA-----------------------------------AACCA-CAAATC---------------------AACCAAATCATCAA-----------------------------AAACCGAAAC--G-ATGGG------T--CA-------TTCTGAACC---ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTAG---GCGTCTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAC--G-ATGGG------T--CA-------TTCTGAACC---A...........................................................2412.00200200000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGG---ATACAATATGTCGCCGC.............2011.00100001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGGCTCGGG---ATACAATATGT...................2311.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAGGGCTCGGG---A.............................1611.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGTCGCCGCTAG---GC.....1811.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCGAAAC--G-ATGGG------T--CA-------TT......................................................................2111.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATATGTCGCCGCTAG---GC.....2011.00100010000000000000
...................................................................................................GTTGATTTTGT-TTGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................1620.50100000010000000000
droSec2
ATGCTGCTT-TTGC--TCGTTTTATT------T-------------------------TCT-------T-TTCTTTTGC--------------------GTTGATTTTGT-TTGCACTC-----AACCAACC----AATCAATCGACCGATCAAATCAACAC-----------------------------------------------------------------------------------------------CAA-----CAACCACACCAA---------TCAATCAACAACAC------------------------CAACAACA-----------------------------------AACCA-CAAATC---------------------AACCAAATCATCAA-----------------------------AAACCGAAAC--G-ATGGG------T--CA-------TTCTGAACC---ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTAG---GCGTCTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCTTACATTCCAGGGCTCGGG---..............................2511.0010001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACATTCCAGGGCTCGGG---A.............................2111.0010100
droYak3
ATGCTGCTTTTTGC--TCGTTTATTT------T-------------------------TCT-------T-TTCTTTTGC--------------------GTTGATTTTGT-TTGCACTC-----AACCAACC----AATCAATCGATCGATCAAATCAACACCAACAA-----------------------------------------------------------------------------------------CAA-----CCACAACACCAA---------TCAATCAACAACAC------------------------CAACAACA-----------------------------------AACCA-CAAATCA------------ACCAAATCAACCAAATCATCAA-----------------------------AAACCGAAAC--G-ATGGG------A--CA-------TTCTGAACC---ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTTG---GCGTCTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAACC---ACAGGATCTTACATTCC...........................................2611.00110000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC--G-ATGGG------A--CA-------TTCTGAAC................................................................2011.00100010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTCGGG---ATACAATATGTCGCCGC.............2611.00101000000000
......................ATTT------T-------------------------TCT-------T-TTCTTTTGC--------------------GTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--G-ATGGG------A--CA-------TTCTGAACC---AC..........................................................2411.00110000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAC--G-ATGGG------A--CA-------TTCTGAACC---AC..........................................................2511.00110000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTACATTCCAGGGCTCGGG---A.............................2311.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGGGCTCGGG---ATACAATATGTCGC................2811.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGG---ATACAATATGTCGC................2011.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGGCTCGGG---ATACAATATGTCGC................2711.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC--G-ATGGG------A--CA-------TTCTGAACC---A...........................................................2211.00110000000000
droEre2
ATGCTGCTTTTTGC--TCGTTTATTT------T-------------------------TCT-------T-TTCTTTTGC--------------------GTTGATTTTGT-TTGCACTC-----AACCAACCAATAAATCAATCGATCGATCAAATCAACAC-----------------------------------------------------------------------------------------------CAA-----CAACCACACCAA---------TCAATCAACAACAC------------------------CAACAACA-----------------------------------AACCA-CAAATC---------------------AACCAAATCATCAA-----------------------------AAACCGAAAC--G-ATGGG------A--CA-------TTCTGAACC---ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTAG---GCGTCTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATTCCAGGGCTCGGG---..............................1811.0010001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACATTCCAGGGCTCGGG---..............................2011.0010000100

Generated: 05/16/2015 at 09:56 PM