dvi_9239

Name	Class	Family	Strand
CT-rich	Low_complexity	Low_complexity	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAAAAGCTGCCCACACTTGAGCCTGTTGCGTCCGGAGGAGGTGCCCAAATGTAAGCTAAACCCCAATATGCACTTCTCGCTCTGCCTCTTTCTCTCTCTCTCTCTCTTTTTGTCTTTCTCTTGCCATATATGTTTATCTCTCTCTTCCTTTTTGCTTTGTTAATTCTCGCTTGTGGCTGTGCTTGTGTTTTGCATCTTCTTCTTGTTTGTTTTTTCTTCTTTTTTTTTTACTGATCTTGTCTATGATAGAG ************************************************..((((..(((....(((.((((...((((...((...................................................................................))..))))..)))).))))))..))......))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060655 9x160_testes_total	SRR060658 140_ovaries_total	SRR060682 9x140_0-2h_embryos_total	SRR060685 9xArg_0-2h_embryos_total	SRR060686 Argx9_0-2h_embryos_total	SRR060687 9_0-2h_embryos_total	M047 female body	SRR060666 160_males_carcasses_total
......................................AGGTCCCTAAATGTATGCTAA................................................................................................................................................................................................	21	3	6	1.50	9	0	0	3	2	2	1	1	0
.....................CCTGTTGCGTCCGAAGGAGGTGG...............................................................................................................................................................................................................	23	2	1	1.00	1	1	0	0	0	0	0	0	0
......................CTGTTGCGTCCGGAGGAGGTGCC..............................................................................................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0	0
.......................................GGTGCCGGAATGTACGCT..................................................................................................................................................................................................	18	3	20	0.05	1	0	0	1	0	0	0	0	0
......................................................................................TCTTTCTCTCTCTCTCTCTCTTT..............................................................................................................................................	23	0	20	0.05	1	0	0	0	0	0	0	0	1
.......................................GGTCCCTAAATGTATGCTAA................................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	1	0	0

GTTTTCGACGGGTGTGAACTCGGACAACGCAGGCCTCCTCCACGGGTTTACATTCGATTTGGGGTTATACGTGAAGAGCGAGACGGAGAAAGAGAGAGAGAGAGAGAAAAACAGAAAGAGAACGGTATATACAAATAGAGAGAGAAGGAAAAACGAAACAATTAAGAGCGAACACCGACACGAACACAAAACGTAGAAGAAGAACAAACAAAAAAGAAGAAAAAAAAAATGACTAGAACAGATACTATCTC ************************************************..((((..(((....(((.((((...((((...((...................................................................................))..))))..)))).))))))..))......))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060667 160_females_carcasses_total	SRR060666 160_males_carcasses_total	SRR1106723 embryo_12-14h	V053 head	SRR060672 9x160_females_carcasses_total	SRR060662 9x160_0-2h_embryos_total	M047 female body	GSM1528803 follicle cells	SRR060685 9xArg_0-2h_embryos_total	V116 male body
...........................................................................................................................................................................ACACCGACACGAACGTAAAA............................................................	20	2	10	0.60	6	6	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................ACACCGACACGAACGCAAAA............................................................	20	1	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............TGATCTCGGACAAAGTAGGCCT.......................................................................................................................................................................................................................	22	3	2	0.50	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACACCGACACGAACGTAAAA............................................................	21	2	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................ACGGAGAAAGAGAGAGAGAGAGAGA................................................................................................................................................	25	0	4	0.25	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................AGAACGTAGAAGAAGAAC..............................................	18	1	5	0.20	1	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AAACAAAAAAGAAGAAAAAAA.........................	21	0	5	0.20	1	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................AACACCGACACGAACGTAA..............................................................	19	2	19	0.16	3	3	0	0	0	0	0	0	0	0	0
.............GGGAAATCGGACGACGCAGG..........................................................................................................................................................................................................................	20	3	7	0.14	1	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................ACAAAAAAGAAGAAAAAAAA........................	20	0	9	0.11	1	0	0	0	0	0	0	1	0	0	0
.............................................................................GCTAGACGGAGAATGAGAGCG.........................................................................................................................................................	21	3	11	0.09	1	0	0	0	0	1	0	0	0	0	0
..................................................................................ACGGAGAAAGGGAGAGAGA......................................................................................................................................................	19	1	17	0.06	1	0	0	0	0	0	0	0	1	0	0
..........................................................................................................................................................................AACACCGACACGAACGTAAAAT...........................................................	22	3	18	0.06	1	0	0	0	0	1	0	0	0	0	0
....................................................................................GGAGAAAGAGAGAGAGAGAG...................................................................................................................................................	20	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.......................................................................TGATGAGCCAGACCGAGAA.................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droVir3	scaffold_12928:7252070-7252320 +	dvi_9239	CAAAAG---CTGCC----------------------------------------------CA-------------------CACTTGAGCCTGTTGCGTCCGGAGGAGGTGCCCAAATGTAAG----------------------------------CTAAA--CC---------CCAATATGCACTTCTCGCTC--TGCCTCTTTC----------TCTCTCTCTCTC------------TCTTT-----TT------------GTCTT-----------------------------TCTCTTGCCATAT----ATG----TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATC------------------------------------------------------------------------------------TCTCTCTT--------CCTTTTTGCTTTGTTA------A--------------------------------------------------T--TCTCGCTTGTGGCTGTGCTTGTGTTTTGC-ATCTTCTTCTTGTTT----------------------------------------------------------------------------------------------------------------GT------------------------------------------------------T--TTTTCTT-CT---------T-----TTTTTTTTACT---------------GATCTTGTCTATGATAGAG
droMoj3	scaffold_6473:2821643-2821882 -		CAAAAG---CTGTC----------------------------------------------CA-------------------CACTTGAGCCAGTTGCGCTCGGAGCAGGCGCCCAAATGTAAG----------------------------------CGAAA--CGAGAACCACAGCAATATGCAACTATTC--CTGTCCCTGT----------------------CTTCTGTTCTATTTGTTGTT----CGTTTATATTTCTCTCTCTTTCCT-------------------------ACAC------------------GCTCTATCTGTCTTTTTCTTTTTCG--------------------------------------------------------------------------------------------------TGCTTTTTTAGCTTGTGTGTTGACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----TTTGA------------------------------------------------------------------------------------------------ATGCTTTCTAT---------TT---GCTTGTGCTTTATTTGTCA------ACTGTT
droGri2	scaffold_15110:2839838-2840087 -		CGTTCG---CTGCGTTGTTGTTGTTGTTGTTTTTTCTTTGGTTTTTGTCGTTTTTGATATCACTCATTTCGTGCTCTCCTCACA-----CATTCTC-------------------------------------------------------------------------------TCGCT--------------C--TCTCTCTCTC----------TCTCTCTCTCTC------------TCTCT-----CT------------CTCTT-----------------------------TCTC------------------TCTCTCTCT--------------CTCTCTCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTCTC--------TCTTTTT------CTGTTTCTTT----------------------------------------------------------CTCTCGCCTTG--C--------------------------TCTTGCTCTCTGCTTTGTCTCTCTCTCTTTCTCTCTCTCT----------------------------------------------------------------------------------CTC-------------------------------------------------------------------------TCTCTC-----------------TCTGTCTG------TCTGTG
droWil2	scf2_1100000004515:1845656-1845902 +		CAAGAA---TTGTC----------------------------------------------CA-------------------CATTTGGATCAAGTA---TTAAAGGAATTGCCGCCATGTAAG----------------------------------CCGA------------------TAT-CACCTCTCT--CTCTCTCTCT----------------------CTCTCTCTCTATTTCTTTTT----TTT------------CT-----------------------------------------------------------------------------CGCTCT--C----------TT--------------T-TACGCTTGCATATATGTATGTATGTACATA---TGTATGTTTTTTTTGCTTTTGCCTTTTCTATGCTTTCTTGAATCATTTGTGTATATTGCTTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------------------------------------------------------------TTC---CGCTTGAAGGATTTGCATGCAA---------------------------------------------------------------T----------ATTTTTCC------TTCTCT
dp5	XL_group1a:199379-199631 -		CGCTGT---CCGTC----------------------------------------------CA-------------------ACA-----CACTTTT---------------------------TCTTCTTGTCCCTCCCCCCGTCCGGACACGGCT-----------------------------------------TCTGTTGTACGCTTTCTGTTTT---------------------------TTTCT-------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTC--------TATA-----AGACGAGCAATTTTGTTGTTTTCGTATTTCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTGCTTTTGGTTTTGCTTCTTCCTCTCTTTCGCTTTCTTGTTGTTGTAAAGATTCCTCTATACTTTCGCTTTTTGTGTGTTTGTGT-----TTT---------TTGTTTTTGTTTTT---GTT------------------------------------------------------T-----------------------TTC----T----------TGTTTTTG------TATTTG
droPer2	scaffold_21:1279957-1280148 -		TATTGG---GCTGC----------------------------------------------CTCTTTC--------------AAA-----CAATTTT-------------------------------------------------------------------------------TTAATTTGTTT----------------TTCTC---------------------------------------------------------CCTCTTTCGCTCACTGCCGCCCCCCCTTCTGCCATTCTCTTTCTACAC----ATG----CT-------------------------CTCCATCTCACTCGTTCGCCCTTTCTCCCTCTATT--------------------TCGGATAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----TTTGGCTGCTTCCTTCTTGCCTCGTTTTTATTTTT-------------------------------------------------------------------------------------------C----------TTCTTCTT------TTTTTT
droAna3	scaffold_13335:1489051-1489198 -		ACTTCT---GCACT----------------------------------------------GCATTCTATTCTGT----------------------------------------------------------CCTGTTCTCTGTGTGCATATGTGACCGGAT--CTGTGCCTTTTTTTTTGTTAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATCCATGTATCCTGTCTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATCCTTGTTC----TT-----CGTGATCTTTTTTTTGT---------T---------------TTGTTTTGTTT---GTTGAT
droBip1	scf7180000396425:665573-665734 +		GAAGAC---GTGCC----------------------------------------------CC-------------------CACTTGAGCCTCCTGCGTCCCGAGGAGGTTCCGAAATGTAAG----------------------------------CTCCATTCC--A----------TGTCCAG--------------------------------------------------------------------------------------------TATTGGCTCTTCAGCTCCTCCTCCCAATCTACCT----ATG----CT-------------------------TTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAACG-------------------------------------------------------------TTC---AGGTTGC------------------------------------T---------GGAT-GT--GTTTTAAGT--------------T----------CCTTTTTG------TTTTGT
droKik1	scf7180000302621:180926-181094 -		AAATGG---ACATT----------------------------------------------CAATCATTTTGTGC----------------------------------------------------------ATT----------------------------------------------------TATCTTTATGTCTCTCTCTCTCTCTCTATCTCT-------------------------------CT------------GTCTT-----------------------------TCTTCCTCTATAT----ATAACTCTCTTTCT--------------CTCTCTCTC--------------------------TCTATC--------------------TCTGACTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTAT-----CTC---------TCTTTCTCTCTCCC---GTG-------------------------------------------------------------------------TCTCCCACA-----------------ATTAT------TGTTTA
droFic1	scf7180000453912:2659019-2659161 -		CGATCT---GCGGC----------------------------------------------TC-------------------TCCCCGTCTTTCTTTCT--------------------------------------------------------------------------------------------------------------------------------CTC-----------------------C------------CTCTC-----------------------------TGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACCAAGTTTCTCCATTTCTGTC--------GCACTTATAGGACCA----AGCTTTTG--GTCCGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------TCTG-TTGGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--TTTTTTTGTTTTTTTTTTG----T----------TGCTATTG------TGTTTG
droEle1	scf7180000491282:443937-444145 -		CCAATT---CAGTT----------------------------------------------GAGCCAAAATGTAT----------------------------------------------------------CTAAATC------------------------------------TCGATATGTAT----------------CTGTATCTGTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGCCTTTACGTCTGCATTTCCAATTTGCATTTGAT---TTTATATTTATGACATTTGTCTCGCTTCGCCCCCATCTCTTTCGCGCCGAGTGTCCCCATCTCTTTCATTGTAGTTTGTGGCCGGGGCTA----AACGCTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC---------TT---G----------ATTGTTTT------GATTTC
droRho1	scf7180000779986:648806-649034 +		GGCACCCAAACACA----------------------------------------------CA-------------------CACCA-------------------------------------------------------------------------------------------AATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCC------TCGCTTTGCGTTCCTCTCTTTAGGTTTTGGTTTTGGTTTCGGTTTCTTC-----TTT-CGT-------------TCTTCT------------------------------------TTTTTTATTATTTC------------TTTGTG--------TGGCCCCGGCTTTTCACAGTTTTATTTGGTTTTTCCGTTTTCGCTGGGCTCTCAC--------------------------TCTTTTAC-TTTTTCTTTTTTT------------------------------------------------------------------------------------------------------------------TG------------------------------------------------------CGTTTTTATT-TG---------T-----TTTTTTTTCGT---------------AATTCTTT-----TTACGA
droBia1	scf7180000301925:7432-7611 -		CACTCC---TCTCT----------------------------------------------CTCTCTCTCT------------------------------------------------------------------------------------------------------------------------------------CTCTC----------T--CTCTCTCTC----------TCTCTCT-----CT------------CTCTCT-----------------------------CTC------TCTCTCTCTC----TC------------------------TCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTCCTCTTCTCT-------CTCTCCTC------T--------------------------------------------------T--TCTCTCTCTCCTCTGTCTCTCTGTCTCTC-TCCCTCCTCTCTCTC----------------------------------------------------------------------------------------------------------------TG------------------------------------------------------T--CTCTCT-CCCT--------------CCTCTCTCTCT---G----------TCTCTCTC------TCTCAT
droTak1	scf7180000415381:852108-852169 +		CAAGAC---GTGCC----------------------------------------------CG-------------------CACTTGGGTCTCCTGCGACCGGAGGAGGCGCCGCAATGTAAG----------------------------------CCAAT--CC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409110:534078-534265 +		TGCATT---CTTCG----------------------------------------------TG------------------------------------------------------------------------------------------------------------------------------------CCGTCCCTCTCTC----------T--CTCTCTCTC------------TCTTCTCTCT-------------------------------------------------CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGC--------TATAAAT-------------TACACT--------------------------------------------GATCTAGT--------AACTTTTG--------TGGCAAAAACTCGTAAATTTGCAGCTTGATTTTTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTTTTATTTTTCTCCCTTTTTTAATTTC-----------------------------------------------------ATTTTC-AT---------T-----TTTTTTTGGA---------------AAATTTTGAATATGAAATAT
dm3	chrUextra:28577046-28577225 -		CTCTCT---TCTCT----------------------------------------------CTTCTCTCTTCTCT----------------------------------------------------------C-ATCTC------------------------------------TCGTCT----------------CTCTTCTCTCTTCTCTCGTT-----------------------------------------------------------------------------------------------------------------------------------CT--C----------TC--------------T-TCTCTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTTCTCTCTTCT-------CTCTTCTC---------------------------------------------------------TCTTCTCTCTTCTCTCT-TCTCTCT-TCTCTCTTCTCTCTTCTC----------------------------------------------------------------------------------------TCTT------------------------CT------------------------------------------------------C--TCTTCT-CTCT--------------TCTCTCTTCTC---T----------CTTCTCTC------TTCTCT
droSim2	x:7821195-7821363 -		CACTTA---CCCGT----------------------------------------------CTCCTCTTTT--------------------TTGGT--------------------------------------------------------------------------------------------------------------------------C--CACTCTACC----------CCTTTTC------------------------------------------------------------------------------------------------------------------------------------------------CCATATGTATGTATGTGCACA---CATATG-----------------------------------------TATGTATATTTCT------------------------------------------------------------------------------------------------------------------TAGCTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA---GCCCACTTT-AGAATCCGCACTCAACCTGTTTCTGTTTCAGCTTTTT---------TTATTG---TTTTTTTTT--------------T----------TTTTTTTT------TTTTTT
droSec2	scaffold_32:153447-153577 +		GCCCAGAGGCCTGT----------------------------------------------CA-------------------ATC-----CACTCTC---------------------------T----------------------------------------------------------------------CTCTCTCTCTCTC----------T--CTCTCTCTC----------TCTCTCT-----CT------------CTCTCT-----------------------------CTC------TCTGTCTCTC----TC------------------------TCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCT----------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTCTCTCTCTCTCTCTCTCTAGCGTTGACTCGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATG
droYak3	X:18312225-18312456 +		AAATTT---ACGCT----------------------------------------------TA-------------------AGCCTGACAGTCTCGCC--------------------------------------------------------------------------------------------------TTCCTTCACTCTTTTTCTGTTCCT------C-------------------TCTCT-------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGC--------TAGTGGTGAAAGCAA----AACTTTTG--CTAATAGTTAAGTGCAACCTTTTTTTGGCTATT---------------------------------------------------------------------------CATTTTCCCTAAGCTCTTTTCCTCGTCTGAGGTGCGTTT-TCTTTGG-CCGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTATATTTTCAGTTTGTT--CTGTTTT-CT---------T-----TTTTTTTTACGAACG----------TTTGTTTT------GTTTAT
droEre2	scaffold_4784:1910063-1910222 -		TATGTA---CATCC----------------------------------------------TG--------------------CT--------------------------------------------------------------------------------------------------------------C--TCGCCCTCTC----------TCTCTCTCTCTC------------TCTCT-----CT------------GTCTT-----------------------------CCTC--------------------------------TCTCTGTTTCGCTCT--C--------------------------------CTTG----------------------------------------------------------------------------------------------------------------------------------------C--------GAGA-----GCGCGTGTGTGTGCGTGAGTGTCCTGT---------------------------------------------------------------------------------------------------------------------------------------------------------TT-AGCCTTTGCCTGCTC----------------------------------------------------------------------------------------------------------------GT------------------------------------------------------T--ATTG---TTGT---ACGCTTTTTAT---------T---------------TGATTTTA------TTTGTG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CAAAAG---CTGCC----------------------------------------------CA-------------------CACTTGAGCCTGTTGCGTCCGGAGGAGGTGCCCAAATGTAAG----------------------------------CTAAA--CC---------CCAATATGCACTTCTCGCTC--TGCCTCTTTC----------TCTCTCTCTCTC------------TCTTT-----TT------------GTCTT-----------------------------TCTCTTGCCATAT----ATG----TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATC------------------------------------------------------------------------------------TCTCTCTT--------CCTTTTTGCTTTGTTA------A--------------------------------------------------T--TCTCGCTTGTGGCTGTGCTTGTGTTTTGC-ATCTTCTTCTTGTTT----------------------------------------------------------------------------------------------------------------GT------------------------------------------------------T--TTTTCTT-CT---------T-----TTTTTTTTACT---------------GATCTTGTCTATGATAGAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................................................................................CTGTTGCGTCCGGAGGAGGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TCTTTC----------TCTCTCTCTCTC------------TCTTT-----...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAAAAG---CTGTC----------------------------------------------CA-------------------CACTTGAGCCAGTTGCGCTCGGAGCAGGCGCCCAAATGTAAG----------------------------------CGAAA--CGAGAACCACAGCAATATGCAACTATTC--CTGTCCCTGT----------------------CTTCTGTTCTATTTGTTGTT----CGTTTATATTTCTCTCTCTTTCCT-------------------------ACAC------------------GCTCTATCTGTCTTTTTCTTTTTCG--------------------------------------------------------------------------------------------------TGCTTTTTTAGCTTGTGTGTTGACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----TTTGA------------------------------------------------------------------------------------------------ATGCTTTCTAT---------TT---GCTTGTGCTTTATTTGTCA------ACTGTT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................GCCAGTTGCGCTCGGAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
CAAAAG---CTGTC----------------------------------------------CA-------------------CACTTGAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1

droGri2

CGTTCG---CTGCGTTGTTGTTGTTGTTGTTTTTTCTTTGGTTTTTGTCGTTTTTGATATCACTCATTTCGTGCTCTCCTCACA-----CATTCTC-------------------------------------------------------------------------------TCGCT--------------C--TCTCTCTCTC----------TCTCTCTCTCTC------------TCTCT-----CT------------CTCTT-----------------------------TCTC------------------TCTCTCTCT--------------CTCTCTCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTCTC--------TCTTTTT------CTGTTTCTTT----------------------------------------------------------CTCTCGCCTTG--C--------------------------TCTTGCTCTCTGCTTTGTCTCTCTCTCTTTCTCTCTCTCT----------------------------------------------------------------------------------CTC-------------------------------------------------------------------------TCTCTC-----------------TCTGTCTG------TCTGTG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................................................................................................................................................................................................................CTC------------TCTCT-----CT------------CTCTT-----------------------------TCTC------------------TCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0

droWil2

CAAGAA---TTGTC----------------------------------------------CA-------------------CATTTGGATCAAGTA---TTAAAGGAATTGCCGCCATGTAAG----------------------------------CCGA------------------TAT-CACCTCTCT--CTCTCTCTCT----------------------CTCTCTCTCTATTTCTTTTT----TTT------------CT-----------------------------------------------------------------------------CGCTCT--C----------TT--------------T-TACGCTTGCATATATGTATGTATGTACATA---TGTATGTTTTTTTTGCTTTTGCCTTTTCTATGCTTTCTTGAATCATTTGTGTATATTGCTTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------------------------------------------------------------TTC---CGCTTGAAGGATTTGCATGCAA---------------------------------------------------------------T----------ATTTTTCC------TTCTCT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................................................................................TCTCT----------------------CTCTCTCTCTATTTCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0

dp5

CGCTGT---CCGTC----------------------------------------------CA-------------------ACA-----CACTTTT---------------------------TCTTCTTGTCCCTCCCCCCGTCCGGACACGGCT-----------------------------------------TCTGTTGTACGCTTTCTGTTTT---------------------------TTTCT-------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTC--------TATA-----AGACGAGCAATTTTGTTGTTTTCGTATTTCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTGCTTTTGGTTTTGCTTCTTCCTCTCTTTCGCTTTCTTGTTGTTGTAAAGATTCCTCTATACTTTCGCTTTTTGTGTGTTTGTGT-----TTT---------TTGTTTTTGTTTTT---GTT------------------------------------------------------T-----------------------TTC----T----------TGTTTTTG------TATTTG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTTCGCTTTTTGTGTGT...............................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTTTGTGT-----TTT---------TTGTT...................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT-----TTT---------TTGTTTTTGTTTT...........................................................................................................................	20	16	0.06	1	0	1	0	0	0	0	0	0	0	0

droPer2

TATTGG---GCTGC----------------------------------------------CTCTTTC--------------AAA-----CAATTTT-------------------------------------------------------------------------------TTAATTTGTTT----------------TTCTC---------------------------------------------------------CCTCTTTCGCTCACTGCCGCCCCCCCTTCTGCCATTCTCTTTCTACAC----ATG----CT-------------------------CTCCATCTCACTCGTTCGCCCTTTCTCCCTCTATT--------------------TCGGATAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----TTTGGCTGCTTCCTTCTTGCCTCGTTTTTATTTTT-------------------------------------------------------------------------------------------C----------TTCTTCTT------TTTTTT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

ACTTCT---GCACT----------------------------------------------GCATTCTATTCTGT----------------------------------------------------------CCTGTTCTCTGTGTGCATATGTGACCGGAT--CTGTGCCTTTTTTTTTGTTAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATCCATGTATCCTGTCTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATCCTTGTTC----TT-----CGTGATCTTTTTTTTGT---------T---------------TTGTTTTGTTT---GTTGAT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATCCTTGTTC----TT-----CGT...........................................................	22	1	2.00	2	0	0	1	0	1	0
..................................................................................................................................................................................TTGTTAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATCCATGTATCCTGT.............................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATCCTTGTTC----TT-----CGTGATCTTT....................................................	29	1	2.00	2	2	0	0	0	0	0
...................................................................ATTCTGT----------------------------------------------------------CCTGTTCTCTGTGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	1	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCTGTCTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATCC...............................................................................	20	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTATCCTGTCTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATCC...............................................................................	23	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATGTATCCTGTCTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG....................................................................................	20	1	1.00	1	1	0	0	0	0	0
......................................................................CTGT----------------------------------------------------------CCTGTTCTCTGTGTGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
..TTCT---GCACT----------------------------------------------GCATTCTATTCTGT----------------------------------------------------------CCTGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................GCATATGTGACCGGAT--CTGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.....................................................................TCTGT----------------------------------------------------------CCTGTTCTCTGTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.................................................................CTATTCTGT----------------------------------------------------------CCTGTTCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATCCATGTATCCTGTC............................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGATCTTTTTTTTGT---------T---------------TTGTT...............	23	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................GTTAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATCCATGTATCCTGT.............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATCCTTGTTC----TT-----..............................................................	21	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................TGTTCTCTGTGTGCATATGTGACCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................TAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATCCATGTATCCTGTCTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT...................................................................................	28	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................ATATGTGACCGGAT--CTGTGCCTTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................TTTTTTTGTTAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATCCATGTATCCT...............................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
....CT---GCACT----------------------------------------------GCATTCTATTCTGT----------------------------------------------------------CCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..............................................................ATTCTATTCTGT----------------------------------------------------------CCTGTTCTCTGTGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................................TTTTGTTAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATCCATGT....................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................GTTCTCTGTGTGCATATGTGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...................................................................ATTCTGT----------------------------------------------------------CCTGTTCTCTGTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTGTTC----TT-----CGTGATCTTTTTTTTG..............................................	28	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................TTGTTAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATCCATGTATCCTGTCT...........................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................TTTTTTTTGTTAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATCCATGTATCC................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
ACTTCT---GCACT----------------------------------------------GCATTCTATTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.CTTCT---GCACT----------------------------------------------GCATTCTATTCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.....T---GCACT----------------------------------------------GCATTCTATTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
....................................................................TTCTGT----------------------------------------------------------CCTGTTCTCTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGT---------T---------------TTGTTTTGTTT---GT....	21	2	0.50	1	0	1	0	0	0	0

droBip1

GAAGAC---GTGCC----------------------------------------------CC-------------------CACTTGAGCCTCCTGCGTCCCGAGGAGGTTCCGAAATGTAAG----------------------------------CTCCATTCC--A----------TGTCCAG--------------------------------------------------------------------------------------------TATTGGCTCTTCAGCTCCTCCTCCCAATCTACCT----ATG----CT-------------------------TTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAACG-------------------------------------------------------------TTC---AGGTTGC------------------------------------T---------GGAT-GT--GTTTTAAGT--------------T----------CCTTTTTG------TTTTGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAATGG---ACATT----------------------------------------------CAATCATTTTGTGC----------------------------------------------------------ATT----------------------------------------------------TATCTTTATGTCTCTCTCTCTCTCTCTATCTCT-------------------------------CT------------GTCTT-----------------------------TCTTCCTCTATAT----ATAACTCTCTTTCT--------------CTCTCTCTC--------------------------TCTATC--------------------TCTGACTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTAT-----CTC---------TCTTTCTCTCTCCC---GTG-------------------------------------------------------------------------TCTCCCACA-----------------ATTAT------TGTTTA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CGATCT---GCGGC----------------------------------------------TC-------------------TCCCCGTCTTTCTTTCT--------------------------------------------------------------------------------------------------------------------------------CTC-----------------------C------------CTCTC-----------------------------TGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACCAAGTTTCTCCATTTCTGTC--------GCACTTATAGGACCA----AGCTTTTG--GTCCGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------TCTG-TTGGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--TTTTTTTGTTTTTTTTTTG----T----------TGCTATTG------TGTTTG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCAATT---CAGTT----------------------------------------------GAGCCAAAATGTAT----------------------------------------------------------CTAAATC------------------------------------TCGATATGTAT----------------CTGTATCTGTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGCCTTTACGTCTGCATTTCCAATTTGCATTTGAT---TTTATATTTATGACATTTGTCTCGCTTCGCCCCCATCTCTTTCGCGCCGAGTGTCCCCATCTCTTTCATTGTAGTTTGTGGCCGGGGCTA----AACGCTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC---------TT---G----------ATTGTTTT------GATTTC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGCACCCAAACACA----------------------------------------------CA-------------------CACCA-------------------------------------------------------------------------------------------AATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCC------TCGCTTTGCGTTCCTCTCTTTAGGTTTTGGTTTTGGTTTCGGTTTCTTC-----TTT-CGT-------------TCTTCT------------------------------------TTTTTTATTATTTC------------TTTGTG--------TGGCCCCGGCTTTTCACAGTTTTATTTGGTTTTTCCGTTTTCGCTGGGCTCTCAC--------------------------TCTTTTAC-TTTTTCTTTTTTT------------------------------------------------------------------------------------------------------------------TG------------------------------------------------------CGTTTTTATT-TG---------T-----TTTTTTTTCGT---------------AATTCTTT-----TTACGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CACTCC---TCTCT----------------------------------------------CTCTCTCTCT------------------------------------------------------------------------------------------------------------------------------------CTCTC----------T--CTCTCTCTC----------TCTCTCT-----CT------------CTCTCT-----------------------------CTC------TCTCTCTCTC----TC------------------------TCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTCCTCTTCTCT-------CTCTCCTC------T--------------------------------------------------T--TCTCTCTCTCCTCTGTCTCTCTGTCTCTC-TCCCTCCTCTCTCTC----------------------------------------------------------------------------------------------------------------TG------------------------------------------------------T--CTCTCT-CCCT--------------CCTCTCTCTCT---G----------TCTCTCTC------TCTCAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAAGAC---GTGCC----------------------------------------------CG-------------------CACTTGGGTCTCCTGCGACCGGAGGAGGCGCCGCAATGTAAG----------------------------------CCAAT--CC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TGCATT---CTTCG----------------------------------------------TG------------------------------------------------------------------------------------------------------------------------------------CCGTCCCTCTCTC----------T--CTCTCTCTC------------TCTTCTCTCT-------------------------------------------------CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGC--------TATAAAT-------------TACACT--------------------------------------------GATCTAGT--------AACTTTTG--------TGGCAAAAACTCGTAAATTTGCAGCTTGATTTTTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTTTTATTTTTCTCCCTTTTTTAATTTC-----------------------------------------------------ATTTTC-AT---------T-----TTTTTTTGGA---------------AAATTTTGAATATGAAATAT	Size	Hit Count	Total Norm	Total
No Reads

dm3

CTCTCT---TCTCT----------------------------------------------CTTCTCTCTTCTCT----------------------------------------------------------C-ATCTC------------------------------------TCGTCT----------------CTCTTCTCTCTTCTCTCGTT-----------------------------------------------------------------------------------------------------------------------------------CT--C----------TC--------------T-TCTCTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTTCTCTCTTCT-------CTCTTCTC---------------------------------------------------------TCTTCTCTCTTCTCTCT-TCTCTCT-TCTCTCTTCTCTCTTCTC----------------------------------------------------------------------------------------TCTT------------------------CT------------------------------------------------------C--TCTTCT-CTCT--------------TCTCTCTTCTC---T----------CTTCTCTC------TTCTCT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-TCTCTCTTCTCTCTTCTC----------------------------------------------------------------------------------------TCT..........................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---------------------------------------------------------TCTTCTCTCTTCTCTC.................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTTCTC----------------------------------------------------------------------------------------TCTT------------------------CT------------------------------------------------------C--TCTTCT-...............................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTTCTCTCT-TCTCTCT-TCTCTC.................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCT-CTCT--------------TCTCTCTTC....................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC----------------------------------------------------------------------------------------TCTT------------------------CT------------------------------------------------------C--TCTTCT-CTCT--------------TCT..........................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTCTC---------------------------------------------------------TCTTCTCTCTTCTCTCT-...............................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CACTTA---CCCGT----------------------------------------------CTCCTCTTTT--------------------TTGGT--------------------------------------------------------------------------------------------------------------------------C--CACTCTACC----------CCTTTTC------------------------------------------------------------------------------------------------------------------------------------------------CCATATGTATGTATGTGCACA---CATATG-----------------------------------------TATGTATATTTCT------------------------------------------------------------------------------------------------------------------TAGCTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA---GCCCACTTT-AGAATCCGCACTCAACCTGTTTCTGTTTCAGCTTTTT---------TTATTG---TTTTTTTTT--------------T----------TTTTTTTT------TTTTTT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTT--------------T----------TTTTTTTT------T.....	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTT--------------T----------TTTTTTTT------TTTT..	21	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GCCCAGAGGCCTGT----------------------------------------------CA-------------------ATC-----CACTCTC---------------------------T----------------------------------------------------------------------CTCTCTCTCTCTC----------T--CTCTCTCTC----------TCTCTCT-----CT------------CTCTCT-----------------------------CTC------TCTGTCTCTC----TC------------------------TCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCT----------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTCTCTCTCTCTCTCTCTCTAGCGTTGACTCGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

AAATTT---ACGCT----------------------------------------------TA-------------------AGCCTGACAGTCTCGCC--------------------------------------------------------------------------------------------------TTCCTTCACTCTTTTTCTGTTCCT------C-------------------TCTCT-------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGC--------TAGTGGTGAAAGCAA----AACTTTTG--CTAATAGTTAAGTGCAACCTTTTTTTGGCTATT---------------------------------------------------------------------------CATTTTCCCTAAGCTCTTTTCCTCGTCTGAGGTGCGTTT-TCTTTGG-CCGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTATATTTTCAGTTTGTT--CTGTTTT-CT---------T-----TTTTTTTTACGAACG----------TTTGTTTT------GTTTAT

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

TATGTA---CATCC----------------------------------------------TG--------------------CT--------------------------------------------------------------------------------------------------------------C--TCGCCCTCTC----------TCTCTCTCTCTC------------TCTCT-----CT------------GTCTT-----------------------------CCTC--------------------------------TCTCTGTTTCGCTCT--C--------------------------------CTTG----------------------------------------------------------------------------------------------------------------------------------------C--------GAGA-----GCGCGTGTGTGTGCGTGAGTGTCCTGT---------------------------------------------------------------------------------------------------------------------------------------------------------TT-AGCCTTTGCCTGCTC----------------------------------------------------------------------------------------------------------------GT------------------------------------------------------T--ATTG---TTGT---ACGCTTTTTAT---------T---------------TGATTTTA------TTTGTG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

-10.34	-10.32	-9.94	-9.92

dvi_9239

scaffold_12928:7252120-7252270 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads