ID:

dvi_9211

 Coordinate:

scaffold_12928:7148968-7149118 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.2 -5.4 -5.4 -5.2

Flybase annnotation

CDS [Dvir\GJ16390-cds]; exon [dvir_GLEANR_16894:5]; intron [Dvir\GJ16390-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GGCTTTTGAACTAACTCGAATTGTCGTTCCAATTGGATTTTGCTTAATTAGTTTGTGCAGTTGCAGTTACGTGTCTTGCTGTTCGTTCGTCTTGTTTTGCTTTCAAAATTCTGAGTTGGTTCTCTGATCTACACTCAGAGTAATTGGCTGGCGAATCAAATTTTAAACTAACGATATTCTTTCAAACTTCACAATCGACAGGCGGAAACGGCGGCAAATCGTATTTGCAAGGTACTCAAGGTTAACCAGGA
*********************************************************************..((.............(((.(((((((((....))))))...))).)))................))****************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M061
embryo
 V047
embryo
 SRR060664
9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR1106729
mixed whole adult body
 V116
male body		 SRR060670
9_testes_total
 V053
head
 SRR060679
140x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060680
 9xArg_testes_total
...............................................................................................................................................................................................................................TTTGCAAGGTACTCAAGGTTAAC..... 23 0 1 2.00 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACAGGCGGAAACGGCGGCA................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GGCGGAAACGGCGGCAAATCGTA............................ 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................AATCGTATTTGCAAGGTACT............... 20 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................CGTGTCTTGCTGTTCGTTCGT................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................GGCGGAAACGGCGGCAAATCGTAT........................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TGCAAGGTACTCAAGGTTAACC.... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GGCAAATCGTATTTGCAAGGT.................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATCGTATTTGCAAGGTACTCAAGGT......... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................ATGCGGAAACGGCGGCAAATC............................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGTATTTGCAAGGTACTCAAGGTT........ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATCGTATTTGCAAGGTACTCAAG........... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AACAGGCGGAAACGGCGGCA................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CTTTGCAAGGTACTCAAGGTTAACC.... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TGGTTCTCTGATCTACACTCA.................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................CGTGTATTGCTGTTCGTG.................................................................................................................................................................... 18 2 10 0.60 6 0 0 0 0 0 0 0 0 3 0 2 0 0 1
...........................................................................TGGCTGTTCGTTCATCTTGTCT.......................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................TCGTGTATTGCTGTTCGTGC................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................ACTCAGGGTAACTGGCTAG.................................................................................................... 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................GAAGTTGCAGTTACGAGT................................................................................................................................................................................. 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................TATTGCTTTAAAAATTCTGA......................................................................................................................................... 20 2 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................TACATTTGGATTTTGCTTAATTA......................................................................................................................................................................................................... 23 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

CCGAAAACTTGATTGAGCTTAACAGCAAGGTTAACCTAAAACGAATTAATCAAACACGTCAACGTCAATGCACAGAACGACAAGCAAGCAGAACAAAACGAAAGTTTTAAGACTCAACCAAGAGACTAGATGTGAGTCTCATTAACCGACCGCTTAGTTTAAAATTTGATTGCTATAAGAAAGTTTGAAGTGTTAGCTGTCCGCCTTTGCCGCCGTTTAGCATAAACGTTCCATGAGTTCCAATTGGTCCT
******************************************************************************************************************..((.............(((.(((((((((....))))))...))).)))................))********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 SRR060667
160_females_carcasses_total
 SRR060687
9_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060664
9_males_carcasses_total
 SRR060679
140x9_testes_total
 M028
head
 SRR060671
9x160_males_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 V116
male body		 M047
female body
 SRR060662
9x160_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060658
140_ovaries_total
 GSM1528803
follicle cells		 SRR060686
Argx9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 SRR060657
140_testes_total
 SRR060659
Argentina_testes_total
 SRR060681
Argx9_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
 M061
embryo
 V053
head
 SRR060678
9x140_testes_total
 SRR060680
 9xArg_testes_total
 V047
embryo
 SRR1106717
embryo_6-8h
.......................................................................................................................................................................................................................................CCTGAGTTCCAATCGGTCT. 19 3 14 83.43 1168 506 141 87 67 78 16 43 25 31 8 54 44 13 19 1 1 0 5 8 6 2 1 1 3 0 0 0 4 1 0 1 1 0 1 0 0
........................................................................................................................................................................................................................................CTGAGTTCCAATCGGTCTT 19 3 20 44.20 884 3 245 107 77 65 45 38 41 29 32 0 21 12 28 12 8 29 17 16 11 11 2 7 4 3 6 3 1 1 2 3 3 0 1 0 1
.......................................................................................................................................................................................................................................CCTGAGTTCCAATCGGTCTT 20 3 6 37.17 223 3 56 16 29 18 2 16 16 8 10 2 7 3 7 7 5 0 1 3 2 1 4 0 2 0 0 0 1 0 2 1 0 1 0 0 0
.......................................................................................................................................................................................................................................CCTGAGTTCCAATCGGTC.. 18 2 2 26.50 53 4 4 11 15 0 0 0 1 2 3 3 1 4 1 0 0 0 0 0 1 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTCCTGAGTTCCAATCGGTC.. 20 3 4 18.75 75 0 2 12 1 4 12 3 3 5 5 0 3 5 3 4 6 0 0 1 0 0 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TGAGTTCCAATCGGTCTT 18 2 10 13.00 130 0 2 12 12 3 37 0 2 3 2 0 1 10 1 1 1 9 5 0 1 10 0 2 3 3 2 3 0 4 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................TCCTGAGTTCCAATCGGTC.. 19 3 12 12.75 153 6 15 28 9 13 14 9 7 3 8 2 1 6 5 3 1 3 5 3 1 1 0 6 3 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CCCTGAGTTCCAATCGGTCT. 20 3 4 1.25 5 3 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................CTGAGTTCCAATTGGTCTT 19 2 2 1.00 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................CTGAGTTCCAATCGGTCC. 18 2 3 1.00 3 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................GCATAACAGCAAGGCTAACCAAA.................................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CCCTGAGTTCCAATCGGTCTT 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CCCTGAGTTCCAATCGGTC.. 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................CTGAGTTCCAATCGGTCCT 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................ATGAGTTCCAATCGGTCTT 19 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................CTGAGTTCCAATCGGTC.. 17 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TGAATGTTCCATGAGTTCTA......... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GCCTGAGTTCCAATCGGTC.. 19 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TAGCTGTGCGGCTTTGC......................................... 17 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................ATGAGTTCCAATCGGTCTA 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:7148918-7149168 - dvi_9211 GGCT---------------TTTG-A--ACTAACTC----GAATTGTCGTTCCAATTGGATTTTGCTTA----------------ATTAGTT-TGTGCAGTTGCAGTTACGT---------------G-----------T-------------------------C----------------------------------------TTGCTG--------TTCGTTCGTCTTGT-----------TT--TGCTT-T-CAA----------------AATTCTGAGTTGGTTCTCTGA-TC-----------------TACACTCAGAGTAATTGGCTGGCGAATCA--------------AATTT-TAA----AC--------TA--AC---GATAT---------TC-TTTC---------------------------------------AA---ACTTC--ACAATCGACAGGCGGAAACGGCGGCAAATCGTATTTGCAAGGTACTCAAGGTTAACCAGGA
droMoj3 scaffold_6473:2923930-2924237 + GGCT---------------TT-G-ATCACTAA--------------CGCTCCAATTGGACTTGCCT-ACATACATACATACATACATAGCT-TGCGCAGTTACGTTTAAAT---------------G-----------T-------------------------CTTGCTGTGTTCGTGCGTGCGCTCGTTC-GTTC-GTTCG-TTCGTTC----G---TTCGTTTGTTTTGT-----------TT-TGTTTT-G-TTT----------------TGCTCTCAATTCATTCTGAGT-TGGTATTCCGA------TCGACACTCAGAGTAATTGGCTGGCGCATCA--------------GGGGT-TTAACTAAC--------AG--------ACAT---------TC-TTCC---------------------------------------AA---ACTTG--ACAATCGGCAGGCGGAAACGGCGGCAAATCGTATTTGCAAGGTGCTCAAGGTTAACCAGGA
droGri2 scaffold_14853:1387758-1388078 - dgr_144 GGCT---------------TTTGCAACACTAACGCAAACAAATAATCGTTCCAATTGGATTTGGCTTA----------------ATTAGTTATGTGCAGTT----------------------------------ACTTCTTGCCTTGCCTTGCCTTGACTTGACTTGCCTTG-ACTTGCCTTGACTTGATC--TTC-GTT----CGTTCG--------TTCGTTCGTCTTGA-----------TT-T-GCAT-ACGAA----------------AATTCTGAGTTGGTTTTGTGA-TCAAACACACA------CACACACTCAGAGTGATTGGCTGGCG-----------A---GTCAAATGT-TAA----AC--------TA--ACATCAATAT---------TC-T------------------------------------------AA---ACTTC-ACCATTTGGCAGGCGGAAACGGCGGCCAACCGTATTTGCAAGGTGCTCAAGGTTAATCAGGA
droWil2 scf2_1100000004909:6974303-6974569 + CGTT---------------C--------------------------CGTTCCCATTG---------------------------------------------------------TTC------CTAC------------------------------------------TATTTCCGCATCCGTTTCCGTTCCGTTCCGTT-ATGTTGTTT--------CCTGTTCGTCTTGTTGAATTTTTATTATTCCTCT-T-ACC----------------AAATCTGAGTTGATCCA-----CCGCACACATG------CTCATACTCAGAACGGT----TGACCCATTCA---AAGCATATTTAATT----G----AC--------CT--ATTT--CCACACCCTTTTCCCTACCA---AAC---GAAA--------TT--------------------------------TTGACAGGCGGAAACGGCAGCCAACCGCATCTGCAAGGTGCTCAAGGTCAACCAGGA
dp5 XL_group1a:2595501-2595749 - TGC-------------------------------------------CGCTGCCACTGGGCCTGGCTT------------------TGAGTTT--------TGTATTTTCCTGT---------------------------------------------------TTTCC----------------------------------------TGTTCAGTTCGTTTTTCGTCTCGT-----------TC-T-GCTT-T-CG--ACAA-----------AAATCTGAGTTGGTTCCGTGCTTCACACACACA------CGCACACTCAGAGCCGC-------CCTATTCA---GAATAATGCTAATT----A----AATAT--------CTCTTATC------GTCCCCCC-TCCC---------------------------------------GA---------ACCAATCGACAGGCGGAAACCGCTGCCAACCGCATCTGCAAGGTACTCAAGGTCAATCAGGA
droPer2 scaffold_28:1032733-1032981 - TGC-------------------------------------------CGCTGCCACTGGGCCTGGCTT------------------TGAGTTT--------TGTATTTTCCTGT---------------------------------------------------TTTCC----------------------------------------TGTTCAGTTCGTTTTTCGTCTCGT-----------TC-T-GCTT-T-CG--ACAA-----------AAATCTGAGTTGGTTCCGTGCTTCACACACACA------CGCACACTCAGAGCCGC-------CCTATTCA---GAATAATGCTAATT----A----AATAT--------CTCTTATC------GTCCCCCC-TCCC---GAC---------------------------------------------CCAATCGACAGGCGGAAACCGCTGCCAACCGCATCTGCAAGGTACTCAAGGTCAATCAGGA
droAna3 scaffold_12929:1915916-1916130 - G-----------------------------------------------------------------------------------------------------------------TTCCT------GTTCCTTGTTACTT-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTATTGT-----------TT-TCGCTTAT-TCC----A-----------AAATCTGAGTTGGTTCCGTGCACCACACACACA------CGCTCGCTCAGAGCCGA-------TCGA-----TTGAAGCCTTCTAATGT--------AT--------CC--ACATTTCT-----------TC-ATCC---AAATCTAATA--------------------------------------CCAATAATCAGGCGGAAACCGCTGCCAACCGCATCTGCAAGGTGCTCAAGGTCAACCAGGA
droBip1 scf7180000396543:376185-376408 - G-----------------------------------------------------------------------------------------------------------------TTC------CTGTT-------ACTT-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTATTGT-----------TT-TCGCTTAT-TCC----------------AAATCTGAGTTGGTTCCGTGCACCACACACACA------CGCTCGCTCAGAGCTCA-------CAGAT----TTGAAGCCATCTAATGT--------AT--------TC--ACATTTCTAT---------CT-TATA---ACCAATGTTA--------CTATGTTACC-------CGAT---------CCAATAATCAGGCGGAAACTGCTGCCAACCGCATCTGCAAGGTGCTGAAGGTCAACCAGGA
droKik1 scf7180000302610:192985-193237 - G-----------------------------------------------------------------------------------------------------------------TTCCT---TCTGTTCC-TGTT--TT-------------------------C----------------------------------------CGTTTT--------CCTGTTCGTCTTGT-----------TTTTTGCTT-T-TCCGAGAAAAAAAAACGAAATATCTGAGTTGGTTCCGTGC-CCACACACACAATGCCAAGCACACTCAGAGCGAA-------ACGA-----TTGAAGCCTTCTAATGT-GC--------CTTAAACCA--CCTTCTCCAC------------ACCC----ACCATGTAA--------AC---------------CCATCCAAC--CAACGGA-CACAGGCGGAAACGGCTGCCAATCGCATCTGCAAGGTGCTGAAGGTCAATCAGGA
droFic1 scf7180000454072:3035475-3035696 - T-------------------------------------------------------------------------------------------CGC-------------CCAG--TTCGTGTTCCTGT-----------T-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTCTTGT-----------TC-TCGCTT-T-TCC----------------AAATCTGAGTTGGTTCCGTGC-CCACACACACA------AGCACGCTCAGAGCGAA-------ACGATTCGATTGAAGCCTTCTAATGTTGCA----AC-AT------C--CCTCTTCCAC---------CC-AC-C---AACCATGCAA--------CCA---------------------------------ACCAGGCTGAAACCGCTGCCAACCGCATCTGCAAGGTTCTCAAGGTGAACCAGGA
droEle1 scf7180000491001:1437571-1437810 - T-------------------------------------------------------------------------------------------CGC-------------CCAG--TTAGTGTTCCTGT-----------T-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTCTTGT-----------TT-TTGCTT-T-TCC----------------AAATCTGAGTTGGTTCCGTGC-CCACACATACA------CGCACACTCAGAGCGAA-------ACGA-----TTGAAGCCTTCTAATGT-GCA----AC-CTT--TCCA--CCTTTTCCAC---------CC-ACCCAACAACCATGTAA--------CCA------------ACCAA---AAA--CACCAAACGACAGGCGGAAACCGCTGCCAACCGCATCTGCAAGGTGCTCAAGGTCAACCAGGA
droRho1 scf7180000777830:8250-8491 - C-------------------------------------------------------------------------------------------------------------AG--TTAGTGTTCCTGT-----------T-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTCTTGT-----------TT-TCGCTT-T-TCC----------------AAATCTGAGTTGGTTCCGTGC-CCACACATACA------CGCACACTCAGAGCGAA-------ACGA-----TTGAAGCCTTCTAATAT-GCA----AC--------CA--CCTTTTCCAC---------CC-ACCC---AACCATGTAACCATGTTACCATGTG------CA--CCACCCAAA--CACCGAACGACAGGCGGAAACCGCTGCCAACCGCATCTGCAAGGTGCTCAAGGTCAACCAGGA
droBia1 scf7180000301760:4527305-4527530 - ------------------------------------------------------------------------------------------------------------------------------------------T-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTCTTGT-----------TT-TCGCTT-T-TCC----------------AAATCTGAGTTGGTTCCGTGC-CCACACACACA------CGCACACTCAGAGCGAA-------ACGA-----TTGAAGCCTTCTAATGT-GCA----AC--------CACCACTTTTCCAC---------CC-ACCC---AACCATGTAA--------CCATGTGCCTTGT--GCCAATCCGAA--CACCGAACCACAGGCGGAAACCGCTGCCAACCGCATCTGCAAGGTGCTCAAGGTCAACCAGGA
droTak1 scf7180000415211:17085-17291 + G-----------------------------------------------------------------------------------------------------------------TTCCT------GTTCC-TGT----T-------------------------T----------------------------------------CCGTTT--------CCTGTTCGTCTTGT-----------TC-TCGCTT-T-TCC----------------AAATCTGAGTTCGTTCCGTGC-CCACACACACA------CGCACACTCAGAGCGAA-------ACGA-----TTGAAGCCTTCTAATGT-GCA----AC--------CT--CCTTTTCCAC-------CCCC-ACCC---AACCATGTAA--------C-------------------------------------CAGGCGGAAACCGCTGCCAACCGCATCTGCAAGGTGCTCAAGGTCAACCAGGA
droEug1 scf7180000409182:465636-465823 - ------------------------------------------------------------------------------------------------------------------------------------------T-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTCTTGT-----------TT-TTGCTT-T-TCC----------------AAATCTGAGTTGGTTCCGTGC-CCACACATACA------CGCACACTCAGAGCGAA-------ACGA-----TTGAAGCCTTCTAATGT-GCA----AC--------AA--CCTTTTCCAC---------CC-ACCC---AACCATG------------------------------------------------ACAGGCGGAAACCGCTGCCAACCGCATCTGCAAGGTACTCAAGGTCAACCAGGA
dm3 chrX:1922011-1922213 - ------------------------------------------------------------------------------------------------------------------------------------------T-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTCTTGT-----------TT-TCGCTT-T-TCC----------------AAATCTGAGTTGGTTCCGTGC-CCACACATACA------CGCACACTCAGAGCGAA-------ACGA-----TTAAAGCCTTCTAATGT-GCA----AC--------CC--ACTTTTCCAC---------CC-ACCC---AACCATGAAA--------CCATGTG------C-------------------AACAACAGGCGGAAACCGCTGCCAACCGGATCTGCAAGGTGCTCAAGGTCAACCAGGA
droSim2 x:1764020-1764222 - ------------------------------------------------------------------------------------------------------------------------------------------T-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTCTTGT-----------TT-TCGCTT-T-TCC----------------AAATCTGAGTTGGTTCCGTGC-CCACACATACA------CGCACACTCAGAGCGAA-------ACGA-----TTAAAGCCTTCTAATGT-GCA----AC--------CC--ACTTTTCCAC---------CC-ACCC---AACCATGAAA--------CCATGTG------C-------------------AACAACAGGCGGAAACCGCTGCCAACCGGATCTGCAAGGTGCTCAAGGTCAACCAGGA
droSec2 scaffold_576:9549-9783 - G-CTGAGTTGAGCTGAGCCGT-G------------------------G--------------------------------------------CGC-------------CCAG------------TGT-----------T-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTCTTGT-----------TT-TCGCTT-T-TCC----------------AAATCTGAGTTGGTTCCGTGC-CCACACATACA------CGCACACTCAGAGCGAA-------ACGA-----TTAAAGCCTTCTAATGT-GCA----AC--------CC--ACTTTTCCAC---------CC-ACCC---CACCATGAAA--------CCATGTG------C-------------------AACAACAGGCGGAAACCGCTGCCAACCGGATCTGCAAGGTGCTCAAGGTCAACCAGGA
droYak3 X:6404268-6404509 + AGCTGAGTTGAGCTGAGTTGG-G------------------------A--------------------------------------------CGC-------------CCAGTGTTC------CTGT-----------T-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTCTTGT-----------TT-TCGCTT-T-TCC----------------AAATCTGAGTTGGTTCCGTGC-CCACACATACA------CGCACACTCAGAGCGAA-------ACGA-----TTAAAGCCTTCTAATGT-GCA----AC--------CC--ACTTTTCCAC---------CC-ACCC---AACCATGAAA--------CCGCGTG------C-------------------AACAACAGGCGGAAACCGCTGCCAACCGAATTTGCAAGGTGCTCAAGGTCAACCAGGA
droEre2 scaffold_4644:1894148-1894374 - AGTT---------------GC-G------------------------G--------------------------------------------CGC-------------CCAGTGTTC------CTGT-----------T-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTCTTGT-----------TT-TCGCTT-T-TCC----------------AAATCTGAGTTGGTTCCGTGC-CCACACATACA------CGCACACTCAGAGCGAA-------ACGA-----TTAAAGCCTTCTAATGT-GCA----AC--------CC--ACTTTTCCAC---------CC-ACCC---AACCATGAAA--------CCGTGTG------C-------------------AACAACAGGCGGAAACCGCTGCCAACCGGATCTGCAAGGTGCTCAAGGTCAACCAGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GGCT---------------TTTG-A--ACTAACTC----GAATTGTCGTTCCAATTGGATTTTGCTTA----------------ATTAGTT-TGTGCAGTTGCAGTTACGT---------------G-----------T-------------------------C----------------------------------------TTGCTG--------TTCGTTCGTCTTGT-----------TT--TGCTT-T-CAA----------------AATTCTGAGTTGGTTCTCTGA-TC-----------------TACACTCAGAGTAATTGGCTGGCGAATCA--------------AATTT-TAA----AC--------TA--AC---GATAT---------TC-TTTC---------------------------------------AA---ACTTC--ACAATCGACAGGCGGAAACGGCGGCAAATCGTATTTGCAAGGTACTCAAGGTTAACCAGGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAAGGTACTCAAGGTTAAC.....2312.002000000000000000000100000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCGGAAACGGCGGCA...................................1912.002002000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGAAACGGCGGCAAATCGTA............................2312.002002000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTATTTGCAAGGTACT...............2012.002001000000000000001000000000000000000000000000000000000000000000
............................................................................................................CGT---------------G-----------T-------------------------C----------------------------------------TTGCTG--------TTCGTTCGT........................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGAAACGGCGGCAAATCGTAT...........................2411.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTACTCAAGGTTAACC....2211.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAATCGTATTTGCAAGGT..................2111.001000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTATTTGCAAGGTACTCAAGGT.........2511.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATTTGCAAGGTACTCAAGGTT........2411.001000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTATTTGCAAGGTACTCAAG...........2311.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................TGGTTCTCTGA-TC-----------------TACACTCA........................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
GGCT---------------TT-G-ATCACTAA--------------CGCTCCAATTGGACTTGCCT-ACATACATACATACATACATAGCT-TGCGCAGTTACGTTTAAAT---------------G-----------T-------------------------CTTGCTGTGTTCGTGCGTGCGCTCGTTC-GTTC-GTTCG-TTCGTTC----G---TTCGTTTGTTTTGT-----------TT-TGTTTT-G-TTT----------------TGCTCTCAATTCATTCTGAGT-TGGTATTCCGA------TCGACACTCAGAGTAATTGGCTGGCGCATCA--------------GGGGT-TTAACTAAC--------AG--------ACAT---------TC-TTCC---------------------------------------AA---ACTTG--ACAATCGGCAGGCGGAAACGGCGGCAAATCGTATTTGCAAGGTGCTCAAGGTTAACCAGGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCGGCAAATCGTATTTGCAAG....................2411.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACGGCGGCAAATCGT.............................1911.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAGGTGCTCAA............1911.001100000
................................................................CT-ACATACATACATACATAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102200000
.....................................................................ATACATACATACATACATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
...............................................................CCT-ACATACATACATACATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
droGri2
GGCT---------------TTTGCAACACTAACGCAAACAAATAATCGTTCCAATTGGATTTGGCTTA----------------ATTAGTTATGTGCAGTT----------------------------------ACTTCTTGCCTTGCCTTGCCTTGACTTGACTTGCCTTG-ACTTGCCTTGACTTGATC--TTC-GTT----CGTTCG--------TTCGTTCGTCTTGA-----------TT-T-GCAT-ACGAA----------------AATTCTGAGTTGGTTTTGTGA-TCAAACACACA------CACACACTCAGAGTGATTGGCTGGCG-----------A---GTCAAATGT-TAA----AC--------TA--ACATCAATAT---------TC-T------------------------------------------AA---ACTTC-ACCATTTGGCAGGCGGAAACGGCGGCCAACCGTATTTGCAAGGTGCTCAAGGTTAATCAGGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGCTCAAGGTTAATCA...2311.00110
droWil2
CGTT---------------C--------------------------CGTTCCCATTG---------------------------------------------------------TTC------CTAC------------------------------------------TATTTCCGCATCCGTTTCCGTTCCGTTCCGTT-ATGTTGTTT--------CCTGTTCGTCTTGTTGAATTTTTATTATTCCTCT-T-ACC----------------AAATCTGAGTTGATCCA-----CCGCACACATG------CTCATACTCAGAACGGT----TGACCCATTCA---AAGCATATTTAATT----G----AC--------CT--ATTT--CCACACCCTTTTCCCTACCA---AAC---GAAA--------TT--------------------------------TTGACAGGCGGAAACGGCAGCCAACCGCATCTGCAAGGTGCTCAAGGTCAACCAGGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAAGGTCAACCAGGA1812.00200020
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAAGGTGCTCAAGGTCA.......2111.00101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAAGGTGCTCAAGGTCAA......2211.00110000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCAAGGTGCTCAAGG..........1911.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTGCTCAAGGTCAACCAGGA2311.00100001
dp5
TGC-------------------------------------------CGCTGCCACTGGGCCTGGCTT------------------TGAGTTT--------TGTATTTTCCTGT---------------------------------------------------TTTCC----------------------------------------TGTTCAGTTCGTTTTTCGTCTCGT-----------TC-T-GCTT-T-CG--ACAA-----------AAATCTGAGTTGGTTCCGTGCTTCACACACACA------CGCACACTCAGAGCCGC-------CCTATTCA---GAATAATGCTAATT----A----AATAT--------CTCTTATC------GTCCCCCC-TCCC---------------------------------------GA---------ACCAATCGACAGGCGGAAACCGCTGCCAACCGCATCTGCAAGGTACTCAAGGTCAATCAGGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCAAGGTACTCAAGGTC........2112.0020100010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCAAGGTACTCAAGGTCA.......2211.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCATCTGCAAGGTACTCA.............2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACCGCTGCCAACCGCATCTGCAAG....................2811.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACCGCATCTGCAAGGTACTCAAG...........2711.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTGCCAACCGCATCTGC.......................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTGCAAGGTACTCAAGGTC........2311.0010001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAAGGTACTCAAGGTCAATCAGG.2711.0010001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATCTGCAAGGTACTCA.............1911.0010000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTCAAGGTCAATCAG..1911.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCAACCGCATCTGCAAGGTACTC..............2711.0010001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGCCAACCGCATCTGCAAGGTACT...............2711.0010001000000
droPer2
TGC-------------------------------------------CGCTGCCACTGGGCCTGGCTT------------------TGAGTTT--------TGTATTTTCCTGT---------------------------------------------------TTTCC----------------------------------------TGTTCAGTTCGTTTTTCGTCTCGT-----------TC-T-GCTT-T-CG--ACAA-----------AAATCTGAGTTGGTTCCGTGCTTCACACACACA------CGCACACTCAGAGCCGC-------CCTATTCA---GAATAATGCTAATT----A----AATAT--------CTCTTATC------GTCCCCCC-TCCC---GAC---------------------------------------------CCAATCGACAGGCGGAAACCGCTGCCAACCGCATCTGCAAGGTACTCAAGGTCAATCAGGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTCAAGGTCAATCAGGA2111.001010000
droAna3
G-----------------------------------------------------------------------------------------------------------------TTCCT------GTTCCTTGTTACTT-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTATTGT-----------TT-TCGCTTAT-TCC----A-----------AAATCTGAGTTGGTTCCGTGCACCACACACACA------CGCTCGCTCAGAGCCGA-------TCGA-----TTGAAGCCTTCTAATGT--------AT--------CC--ACATTTCT-----------TC-ATCC---AAATCTAATA--------------------------------------CCAATAATCAGGCGGAAACCGCTGCCAACCGCATCTGCAAGGTGCTCAAGGTCAACCAGGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAACCGCATCTGCAAGGTGCTC..............2611.001000001
..................................................................................................................................................................................................................................................................................................................................CAGAGCCGA-------TCGA-----TTGAAGCC.........................................................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGCTGCCAACCGCATCC.........................2011.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGCTGCCAACCGCATCTGCAAGGT..................2711.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCAACCGCATCTGCAAGGTGCTC..............2711.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGCTCAAGGTCAACCAGGA2211.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCATCTGCAAGGTGCTCA.............2111.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCAACCGCATCTGCAAGGTGCT...............2611.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAACCGCATCTGCAAGGTGCT...............2411.001000001
droBip1
G-----------------------------------------------------------------------------------------------------------------TTC------CTGTT-------ACTT-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTATTGT-----------TT-TCGCTTAT-TCC----------------AAATCTGAGTTGGTTCCGTGCACCACACACACA------CGCTCGCTCAGAGCTCA-------CAGAT----TTGAAGCCATCTAATGT--------AT--------TC--ACATTTCTAT---------CT-TATA---ACCAATGTTA--------CTATGTTACC-------CGAT---------CCAATAATCAGGCGGAAACTGCTGCCAACCGCATCTGCAAGGTGCTGAAGGTCAACCAGGASizeHit CountTotal NormTotal
No Reads
droKik1
G-----------------------------------------------------------------------------------------------------------------TTCCT---TCTGTTCC-TGTT--TT-------------------------C----------------------------------------CGTTTT--------CCTGTTCGTCTTGT-----------TTTTTGCTT-T-TCCGAGAAAAAAAAACGAAATATCTGAGTTGGTTCCGTGC-CCACACACACAATGCCAAGCACACTCAGAGCGAA-------ACGA-----TTGAAGCCTTCTAATGT-GC--------CTTAAACCA--CCTTCTCCAC------------ACCC----ACCATGTAA--------AC---------------CCATCCAAC--CAACGGA-CACAGGCGGAAACGGCTGCCAATCGCATCTGCAAGGTGCTGAAGGTCAATCAGGASizeHit CountTotal NormTotal
No Reads
droFic1
T-------------------------------------------------------------------------------------------CGC-------------CCAG--TTCGTGTTCCTGT-----------T-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTCTTGT-----------TC-TCGCTT-T-TCC----------------AAATCTGAGTTGGTTCCGTGC-CCACACACACA------AGCACGCTCAGAGCGAA-------ACGATTCGATTGAAGCCTTCTAATGTTGCA----AC-AT------C--CCTCTTCCAC---------CC-AC-C---AACCATGCAA--------CCA---------------------------------ACCAGGCTGAAACCGCTGCCAACCGCATCTGCAAGGTTCTCAAGGTGAACCAGGASizeHit CountTotal NormTotal
No Reads
droEle1
T-------------------------------------------------------------------------------------------CGC-------------CCAG--TTAGTGTTCCTGT-----------T-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTCTTGT-----------TT-TTGCTT-T-TCC----------------AAATCTGAGTTGGTTCCGTGC-CCACACATACA------CGCACACTCAGAGCGAA-------ACGA-----TTGAAGCCTTCTAATGT-GCA----AC-CTT--TCCA--CCTTTTCCAC---------CC-ACCCAACAACCATGTAA--------CCA------------ACCAA---AAA--CACCAAACGACAGGCGGAAACCGCTGCCAACCGCATCTGCAAGGTGCTCAAGGTCAACCAGGASizeHit CountTotal NormTotal
No Reads
droRho1
C-------------------------------------------------------------------------------------------------------------AG--TTAGTGTTCCTGT-----------T-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTCTTGT-----------TT-TCGCTT-T-TCC----------------AAATCTGAGTTGGTTCCGTGC-CCACACATACA------CGCACACTCAGAGCGAA-------ACGA-----TTGAAGCCTTCTAATAT-GCA----AC--------CA--CCTTTTCCAC---------CC-ACCC---AACCATGTAACCATGTTACCATGTG------CA--CCACCCAAA--CACCGAACGACAGGCGGAAACCGCTGCCAACCGCATCTGCAAGGTGCTCAAGGTCAACCAGGASizeHit CountTotal NormTotal
No Reads
droBia1
------------------------------------------------------------------------------------------------------------------------------------------T-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTCTTGT-----------TT-TCGCTT-T-TCC----------------AAATCTGAGTTGGTTCCGTGC-CCACACACACA------CGCACACTCAGAGCGAA-------ACGA-----TTGAAGCCTTCTAATGT-GCA----AC--------CACCACTTTTCCAC---------CC-ACCC---AACCATGTAA--------CCATGTGCCTTGT--GCCAATCCGAA--CACCGAACCACAGGCGGAAACCGCTGCCAACCGCATCTGCAAGGTGCTCAAGGTCAACCAGGASizeHit CountTotal NormTotal
No Reads
droTak1
G-----------------------------------------------------------------------------------------------------------------TTCCT------GTTCC-TGT----T-------------------------T----------------------------------------CCGTTT--------CCTGTTCGTCTTGT-----------TC-TCGCTT-T-TCC----------------AAATCTGAGTTCGTTCCGTGC-CCACACACACA------CGCACACTCAGAGCGAA-------ACGA-----TTGAAGCCTTCTAATGT-GCA----AC--------CT--CCTTTTCCAC-------CCCC-ACCC---AACCATGTAA--------C-------------------------------------CAGGCGGAAACCGCTGCCAACCGCATCTGCAAGGTGCTCAAGGTCAACCAGGASizeHit CountTotal NormTotal
No Reads
droEug1
------------------------------------------------------------------------------------------------------------------------------------------T-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTCTTGT-----------TT-TTGCTT-T-TCC----------------AAATCTGAGTTGGTTCCGTGC-CCACACATACA------CGCACACTCAGAGCGAA-------ACGA-----TTGAAGCCTTCTAATGT-GCA----AC--------AA--CCTTTTCCAC---------CC-ACCC---AACCATG------------------------------------------------ACAGGCGGAAACCGCTGCCAACCGCATCTGCAAGGTACTCAAGGTCAACCAGGASizeHit CountTotal NormTotal
No Reads
dm3
------------------------------------------------------------------------------------------------------------------------------------------T-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTCTTGT-----------TT-TCGCTT-T-TCC----------------AAATCTGAGTTGGTTCCGTGC-CCACACATACA------CGCACACTCAGAGCGAA-------ACGA-----TTAAAGCCTTCTAATGT-GCA----AC--------CC--ACTTTTCCAC---------CC-ACCC---AACCATGAAA--------CCATGTG------C-------------------AACAACAGGCGGAAACCGCTGCCAACCGGATCTGCAAGGTGCTCAAGGTCAACCAGGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCTGCAAGGTGCTCA.............18183.0083000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002002729000028820000030000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGATCTGCAAGGTGCTCA.............21116.001600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100011000000200000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCTGCAAGGTGCTCAA............19116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001600000100000010100600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAACCGGATCTGCAAGGTGCTCA.............2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000200000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGCTGCCAACCGGATCTGCAA.....................2417.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGGATCTGCAAGGTGCTC..............2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGGCGGAAACCGCT......................................2017.0070000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATCTGCAAGGTGCTCA.............1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001400000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCTGCCAACCGGATCTGCA......................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGATCTGCAAGGTGCTCAA............2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGAAACCGCTGCCA..................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGCAAGGTGCTCAAGGTC........2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAAGGTGCTCAAGGT.........1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCTGCAAGGTGCTCAAG...........2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATCTGCAAGGTGCTCAAG...........2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGATCTGCAAGGTGCTCA.............2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGGATCTGCAAGGTGCTCAAGGTC........2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGCAAGGTGCTCAA............1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACCGGATCTGCAAGGTGC................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGGCGGAAACCGCTGCCAACC...............................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATCTGCAAGGTGCTCAA............2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGCAAGGTGCTCAAGGTCAAC.....2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATCTGCAAGGTGCTC..............1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGATCTGCAAGGTGCTC..............2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCAACCGGATCTGCA......................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGTGCTCAAGGTCAACC....2212.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACCGCTGCCAACCGGA............................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCTGCAAGGTGCTCAAGGTC........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAAGGTGCTCAAGGTCAA......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................CACATACA------CGCACACTCAGAGCG...................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................TCTGAGTTGGTTCCGTGC-CCA................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--------CCATGTG------C-------------------AACAACAG..................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACCGGATCTGCAAGGTGCTCAA............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAAGGTGCTCAAGGTC........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCAACCGGATCTGCAAGGTGCTC..............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAAGGTGCTCAAGGTCA.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACCGGATCTGCAAGGTGCTCAAG...........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGAAACCGCTGCCAA.................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGCCAACCGGATCTGCAAGGTG.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCTGCAAGGTGCTCAAGGTCAAC.....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAAGGTGCTCAAGGTCA.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAACCGGATCTGCAAGG...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACCGGATCTGCAAG....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCAACCGGATCTGCAC.....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGGATCTGCAAGGTGCTCAAGG..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGTGCTCAAGGTCAAA.....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACCGCTGCCAACCGGAT...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCGGAAACCGCTGCCA..................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGGATCTGCAAGGTGCTCAAGGT.........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................AATCTGAGTTGGTTCCGTGC-...................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCAACCGGATCTGCAAGGTGCTCA.............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCGGAAACCGCTGCCAACCGG.............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGATCTGCAAGGTGCT...............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGCAAGGTGCTCAAGGTCAA......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCGGAAACCGCTGCCAACC...............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCGGAAACCGCTGCCA..................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACCGGATCTGCAAGGTGCTCAAGG..........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGATCTGCAAGGTGCTCAAC...........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGGATCTGCAAGGTGCTCA.............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCTGCAAGGTGCTCAAGGT.........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTG------C-------------------AACAACAGGCGGAAACCGCTGC....................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAACCGGATCTGCAAGGTGC................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGCTCAAGGTCAACCAGGA2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCGGAAACCGCTGCC...................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGATCTGCAAGGTGCTCTT............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGCCAACCGGATCTGCAAGGTGCTC..............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAAGGTGCTCAAGGTCAACCAGGA2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTG------C-------------------AACAACAGGCGGAAACCGCT......................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCTGCAAGGTGCTCAAGG..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCAACCGGATCTGCAAGGTGCT...............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGATCTGCAAGGTGCTCAAG...........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TCAGAGCGAA-------ACGA-----TTAAAGC..........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..............................................................................................................................................................................................................................................................................................................CATACA------CGCACACTCAGAGCG...................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................................................................................................................................................................................................................................................................ACACTCAGAGCGAA-------ACGA-----TTAAAG...........................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
................................................................................................................................................................................................................................................................................................................TACA------CGCACACTCAGAGCGAA-------ACGA-----T................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGTGCTCAAGGTCAACC....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAA--------CCATGTG------C-------------------AACAACAGGCGGA.............................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................CCTGTTCGTCTTGT-----------TT-TCGCT................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGAAACCGCTGCCAACCGGAT...........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGAAACCGCTGCCAACC...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACCGGATCTGCAAGGTGCT...............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGCAAGGTGCTCAAC...........1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
------------------------------------------------------------------------------------------------------------------------------------------T-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTCTTGT-----------TT-TCGCTT-T-TCC----------------AAATCTGAGTTGGTTCCGTGC-CCACACATACA------CGCACACTCAGAGCGAA-------ACGA-----TTAAAGCCTTCTAATGT-GCA----AC--------CC--ACTTTTCCAC---------CC-ACCC---AACCATGAAA--------CCATGTG------C-------------------AACAACAGGCGGAAACCGCTGCCAACCGGATCTGCAAGGTGCTCAAGGTCAACCAGGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGCCAACCGGATCTGCAAG....................2211.00100001000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAACCGGATCTGCAAG....................1911.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGGCGGAAA...........................................1520.50100000001000000000
droSec2
G-CTGAGTTGAGCTGAGCCGT-G------------------------G--------------------------------------------CGC-------------CCAG------------TGT-----------T-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTCTTGT-----------TT-TCGCTT-T-TCC----------------AAATCTGAGTTGGTTCCGTGC-CCACACATACA------CGCACACTCAGAGCGAA-------ACGA-----TTAAAGCCTTCTAATGT-GCA----AC--------CC--ACTTTTCCAC---------CC-ACCC---CACCATGAAA--------CCATGTG------C-------------------AACAACAGGCGGAAACCGCTGCCAACCGGATCTGCAAGGTGCTCAAGGTCAACCAGGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCTGCCAACCGGATCTGCAAGG...................2511.0010100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGCCAACCGGATCTGC.......................1911.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG------C-------------------AACAACAGGCGGAAACCG........................................2211.0011000
droYak3
AGCTGAGTTGAGCTGAGTTGG-G------------------------A--------------------------------------------CGC-------------CCAGTGTTC------CTGT-----------T-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTCTTGT-----------TT-TCGCTT-T-TCC----------------AAATCTGAGTTGGTTCCGTGC-CCACACATACA------CGCACACTCAGAGCGAA-------ACGA-----TTAAAGCCTTCTAATGT-GCA----AC--------CC--ACTTTTCCAC---------CC-ACCC---AACCATGAAA--------CCGCGTG------C-------------------AACAACAGGCGGAAACCGCTGCCAACCGAATTTGCAAGGTGCTCAAGGTCAACCAGGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCAAGGTCAACCAGGA2011.00101000000000
...TGAGTTGAGCTGAGTTGG-G------------------------A--------------------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACCGCTGCCAACCGAATTTGCAAG....................2811.00100100000000
droEre2
AGTT---------------GC-G------------------------G--------------------------------------------CGC-------------CCAGTGTTC------CTGT-----------T-------------------------C----------------------------------------CTGTTT--------CCTGTTCGTCTTGT-----------TT-TCGCTT-T-TCC----------------AAATCTGAGTTGGTTCCGTGC-CCACACATACA------CGCACACTCAGAGCGAA-------ACGA-----TTAAAGCCTTCTAATGT-GCA----AC--------CC--ACTTTTCCAC---------CC-ACCC---AACCATGAAA--------CCGTGTG------C-------------------AACAACAGGCGGAAACCGCTGCCAACCGGATCTGCAAGGTGCTCAAGGTCAACCAGGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACCGGATCTGCAAGGTGCTCA.............2512.0020000110
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGCTCAAGGTCAACCAGGA2212.0022000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAAGGTGCTCAAGGT.........1811.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAACCGGATCTGCAAGGTGCTC..............2511.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGATCTGCAAGGTGCTCAAGGTCA.......2711.0010000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGGATCTGCAAGGTGCTC..............2211.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAACCGGATCTGCAAGGTGCTCA.............2711.0011000000

Generated: 05/16/2015 at 08:47 PM