dvi_9186

Name	Class	Family	Strand
DMCR1A	LINE	CR1	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GTGACAAGGAGCTGAAACGGCGACGCGCCGCCGAGGAGAAACTGCATGAGGTGAGTGCACATCCATATTTATTTTCCTTTTCCCTCTGAACAGGATACTCTGTAATGCTTGTGATAATCATCGCAGAGCATCCTGAACAGCAGGCAGTCGATTGCACCAGTTATTAGTTTATGAATAAATATTACGCCAAGCTTGGTTCTACGATTAATTGAGGAAGAAAGATTAATCATCAAAAGTCTGCTGGAGTATGA ************************************************.((.(((((.(((...................((((((..((((((.((((((.(((.(((...))).))).)))))).))))))..))).))).....))))))))))..........................((((....))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060667 160_females_carcasses_total	SRR060680 9xArg_testes_total	SRR060687 9_0-2h_embryos_total	SRR060685 9xArg_0-2h_embryos_total	SRR1106729 mixed whole adult body	V116 male body	M027 male body	SRR060659 Argentina_testes_total	SRR060682 9x140_0-2h_embryos_total	SRR1106727 larvae
GTGACAAGGAGCTGAAAC.........................................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..................................................GTGAGTGCACATCCATATCTATTTTCCT.............................................................................................................................................................................	28	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................ATCATCGCAGAGCATCCTGAAC.................................................................................................................	22	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..GACAAGGAGCTGAAACGGCGACG..................................................................................................................................................................................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........GCTGAAACGGCGACGCGCCGCC...........................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.....................GACGCGCCGCCGAGGAGAAACT................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..................................................GTGAGTGCACATCCATATCTATTTTCC..............................................................................................................................................................................	27	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................AGGAGAAACTGCATGAGGAA......................................................................................................................................................................................................	20	2	2	0.50	1	0	0	1	0	0	0	0	0	0	0
...........................CCGCCGAGGAGAAACTAAGT............................................................................................................................................................................................................	20	3	5	0.20	1	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................TAATTGAGGAAGAAAGGCT...........................	19	2	7	0.14	1	0	0	0	0	0	1	0	0	0	0
.......................................AACTGGATGACTTGAGTGCA................................................................................................................................................................................................	20	3	9	0.11	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................TGGAGGAAGAAAGATTATGC.......................	20	3	10	0.10	1	0	0	0	1	0	0	0	0	0	0
.............................GCCGATGAGAAACTGGAT............................................................................................................................................................................................................	18	2	17	0.06	1	0	0	0	0	0	0	0	1	0	0
.................................................................................................................................................................................................................GGAGGAAGAAAGATTATGC.......................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................CAAAAGTCTGATGGAGC....	17	2	20	0.05	1	0	0	0	0	0	0	0	0	0	1

CACTGTTCCTCGACTTTGCCGCTGCGCGGCGGCTCCTCTTTGACGTACTCCACTCACGTGTAGGTATAAATAAAAGGAAAAGGGAGACTTGTCCTATGAGACATTACGAACACTATTAGTAGCGTCTCGTAGGACTTGTCGTCCGTCAGCTAACGTGGTCAATAATCAAATACTTATTTATAATGCGGTTCGAACCAAGATGCTAATTAACTCCTTCTTTCTAATTAGTAGTTTTCAGACGACCTCATACT ************************************************.((.(((((.(((...................((((((..((((((.((((((.(((.(((...))).))).)))))).))))))..))).))).....))))))))))..........................((((....))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060675 140x9_ovaries_total	M027 male body	SRR060679 140x9_testes_total	V053 head	SRR060680 9xArg_testes_total	M028 head	M047 female body	SRR060663 160_0-2h_embryos_total	SRR060682 9x140_0-2h_embryos_total
..................................................................................................................ATTAGTATCGTCTCGTAGGAC....................................................................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................CGGTTCCAGCCAAGATGCAAA.............................................	21	3	2	0.50	1	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TTCTTTCTAATTACTAGTTTCT...............	22	3	5	0.20	1	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................GTGGTTCCAGCCAAGATGC................................................	19	3	5	0.20	1	0	0	1	0	0	0	0	0	0
.....TGCCTCGACTTGGCCGCT....................................................................................................................................................................................................................................	18	2	6	0.17	1	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................TGGTTCCAGCCAAGATGC................................................	18	3	20	0.15	3	0	1	0	0	0	1	1	0	0
.............................................................................................CTATGAGGCATTATGAAAA...........................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	1
........................................................................................................................................................................................GTGGTTCCATCCAAGATG.................................................	18	3	20	0.05	1	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................AGAATGCGGTTCGAAACA......................................................	18	2	20	0.05	1	0	0	0	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12928:7050484-7050734 +	dvi_9186	GTGACAAGGAGCTGAAACGGCGACGCGCCGCCGAGGAGAAACTGCATGAGGTGAGTGCACATCCATATTTATTTTCCTTTTCCCTCTGAAC----------AGGATACTCTGTAATGCTTGTGATAATCATCG--CAGAGCATCCTGA---ACAG------CAGGCAGTCGATTGCACCAGTTATTAGTTTATGAATAAATATTACGCCAAGCTTGGTTCTACGATTAATTGAGGAAGAAAGATTAATCATCAAAAGTCTGCTGGAGTATGA--------------
droMoj3	scaffold_6328:2721544-2721623 +		GCGACAAGGAGCTGAAGCGGCGACGCGCAGCCGAGGAGAAGCAGCACGAGGTAA--------ATATCTATAGATATAACTTCTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC----------------
droGri2	scaffold_14906:13740991-13741093 -		A----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAATTTCGCCACTTATTGGTTTATGT---AAGATTATACCAAGCATGGTTCCACTATCAGAAAAAGAAGGAAGATATATGATTAAAAGTCTATTACGGTAAGA--------------
droWil2	scf2_1100000001038:12075-12247 -		TCAGA------------------------------------------------------------------------------------GC----------AGAGGACCCTGAAAGGTTCATGCATAAAAATG--CAAAGGACCTAAG---CTAATAACTCAGGCGAGTCGATATCACCAATTAGGAGCTTGTCATTAAAAATAACACCAAGCATAATTCTACGGTTAGTTAGGGAAGGAAGGTTAATCAAGAGAAGTCTACTAGAATACAA--------------
dp5	Unknown_group_68:2189-2359 -		CTGT-------------------------------------------------------------------------------------AT----------AAAATATCTAGTAAGTCTAA---TAGGAATCATGAAGTTTATGCGGC---TCAACAGATCAGGACTGTCTATGTCACCCCCGATCAAGTTGTGCATAAAAATCACACCAAGCATTTTTCTACGGTTAACTAAGGATGGGAGGTTTACTGAAAACAGTCTACTAGAGTAAAA--------------
droPer2	scaffold_146:50319-50502 -		TCCGC------------------------------------------------------------------------------------CCCCCTCCAAACATAAAA-TTTCTAGTCAGTCTAATAGGAATCGTGAAGTTTATGCGGC---TCAACAGATCAGGGCTGTCTATGTCACCCCCGATCAAGTTATGCATAAATATCACACCAAGCATTTTTCTACGCTTAACTAAGGATGGGAGGTTTACTAATAGTAGTCTTCTAGAGTAAGA--------------
droAna3	scaffold_13280:32465-32576 +		GCT----------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTGTCTATATTTCCATAAATAAGATTATATAGAAACATGACACCCAGCATCGTTCTACGATTAGTTAATGATGGTAAGTTGATTAGTAAAAGTCTACTATGATAAGA--------------
droBip1	scf7180000394820:6354-6465 +		GCT----------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTATCTACATCCCCGTTGATAAGGTTATGCAGAAAAACTACACCGAGCATTGTCCTACGATTTGTTAAGCTAGGTAAGTTAATAAGCAAAAGTCTGCTACTGTAGGA--------------
droKik1	scf7180000301954:14912-15037 -		GCAGC------------------------------------------------------------------------------------AC----------GT---------------------------------------------------CCAACTCTAAGCTCTCAACATCACCATTTATTAAGTTGTTAAGAAATACGACACCAAGCATCGTTCTACGGTTAGCTAGAGAGGGTT-ATTAATTAATAGAACTCTACTAGAATAGGA--------------
droFic1	scf7180000453795:12091-12205 +		AGT-------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCACTGTCAATTTCACCACGTATAAGGTTATGAATAAATATAGTACCAAGCATCGTTCTACGATTAGTAAAGGAGGGCAAGTTAATAAGGAGCAATCTATTAGGATAGGA--------------
droEle1	scf7180000490214:604945-605034 -		GCGACAAGGAGCTAAAGCGTCGGCGCGCGGCCGAGGAGAAACTGCACGAGGTAAGTCCTTAAATATATAAATATATTGTTTCTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAA--------------
droRho1	scf7180000761412:18025-18180 +		TCAGA------------------------------------------------------------------------------------AC----------ATAATACTCTGAAAGGCTCATGCAAG-------------------GC---ATACCAAGTCGGGGCAGTCAATATCACCATGTATAAGGTTATAAATGAAGATAGTACCAAGCATCGTTCTACGGTTGGCTAGGGAGGGTAAATTAATCAACAGAAGTCTACTAGAATAAGA--------------
droBia1	scf7180000301143:223-328 -		A----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAATGTCACCTCTTATTAGATTTTGTATAAAAATAGTACCAAGCCTTGTTCTACGATTTACAAGTGTAGGTAAATTAAGCAATTCTAATCTACTCTCGTAGGA--------------
droTak1	scf7180000414986:26617-26726 -		A----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGACGGCGCCAGTCATGAGTTTGTGAAGTAATATCACACCATAACAGGTCCGACGATCCTCTAAGGTAGGTAGATCCAAGAGGCGCAACCTGTCTCTATAAGAA----------GGC
droEug1	scf7180000409497:22794-22934 +		AGCG----------------------------------------------------------------------------------------------------------------------------------------------GC---CTAGAACGGCCTGGCTATCAATTTCACCATTTAGAAGATTATGGATAAAGACGACACCAAGCATAGTCCTACGATTAGCGAGGGATGGCAAATTGATTAGTAAGAGTCTACTTTTATAAGAGGGAAGGTGTATGC
dm3	chr3RHet:273630-273798 +		TCAGA------------------------------------------------------------------------------------AC----------ATAATACTCTGTATTATG-----TTGTAACAGAGAAGT-TAGACGGCTTCTAACCAAGTCGGGACTCCCAACTTCACCACGAATAAGCTTACAAATAAAGACTGTTCCAAGCATAGTTCTACGATTAGCTAGGGAAGGTAAATTAATTAAAATTAGTCTACTAGAATA-----------------
droSim2	node_25412:2550-2646 +		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCACGAATAAGCTTACAAATAAAGACTGTTCCAAGCATAGTTCTACGGTTAGCTAGGGAAGGTAAATTAATTAAAAGTAGTCTACTGGAATAAGG--------------
droSec2	scaffold_49:148991-149103 +		AATAG------------------------------------------------------------------------------------------------------------------------------------------------------------GATAAAGTCAACATCCCCACGAATAAGCTTACAAATAAAGACTGTTCCAAGCTTAGTTCTACGGTTAGCTAGGGATGGTAAATTAATTAAAAGTAGTCTATTGGAATA-----------------
droYak3	v2_chrUn_5709:230898-231081 +		TCCCC------------------------------------------------------------------------------------TCTGCAGCCTA-ATAATACTCTGTAATAAATCTGCTTGGAACAGTGAAGTTTAGCCGAC---TAACCAAGTTGGGACTATCAACTTCTCCACAAATAAGGTTAAAAATAAAGACTGTTCCAAGCATCGTTCTACGATTAGCTTAGGAGGGTAAGTTAATTAACATTAGTCTACTGGAATAAGG--------------
droEre2	scaffold_4512:747064-747170 -		A------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTATCAACTGCACCACATTTCAAATTACAAATAAAGACTGTTGCAAGCATTGTTCTACGGTTAGCTAGGGAAGGTAAATTTATTAACATTAGTCTACTGGAATA-----------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

GTGACAAGGAGCTGAAACGGCGACGCGCCGCCGAGGAGAAACTGCATGAGGTGAGTGCACATCCATATTTATTTTCCTTTTCCCTCTGAAC----------AGGATACTCTGTAATGCTTGTGATAATCATCG--CAGAGCATCCTGA---ACAG------CAGGCAGTCGATTGCACCAGTTATTAGTTTATGAATAAATATTACGCCAAGCTTGGTTCTACGATTAATTGAGGAAGAAAGATTAATCATCAAAAGTCTGCTGGAGTATGA--------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
GTGACAAGGAGCTGAAAC............................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ATCATCG--CAGAGCATCCTGA---AC.....................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..GACAAGGAGCTGAAACGGCGACG.....................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GCTGAAACGGCGACGCGCCGCC..............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GACGCGCCGCCGAGGAGAAACT...................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AGGAGAAACTGCATGAGGAA.........................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCGACAAGGAGCTGAAGCGGCGACGCGCAGCCGAGGAGAAGCAGCACGAGGTAA--------ATATCTATAGATATAACTTCTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC----------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

A----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAATTTCGCCACTTATTGGTTTATGT---AAGATTATACCAAGCATGGTTCCACTATCAGAAAAAGAAGGAAGATATATGATTAAAAGTCTATTACGGTAAGA--------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

TCAGA------------------------------------------------------------------------------------GC----------AGAGGACCCTGAAAGGTTCATGCATAAAAATG--CAAAGGACCTAAG---CTAATAACTCAGGCGAGTCGATATCACCAATTAGGAGCTTGTCATTAAAAATAACACCAAGCATAATTCTACGGTTAGTTAGGGAAGGAAGGTTAATCAAGAGAAGTCTACTAGAATACAA--------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................................................................................................TAACTCAGGCGAGTCGATATCACCAAT........................................................................................................	27	20	1.40	28	0	28	0	0	0
TCAGA------------------------------------------------------------------------------------GC----------AGAGGACCCTGAAAGGTTCA.....................................................................................................................................................................	27	2	0.50	1	0	0	0	1	0
............................................................................................................................................................................................................ACACCAAGCATAATTCTACGG.............................................................	21	20	0.25	5	0	5	0	0	0
.................................................................................................................................................................................................................AAGCATAATTCTACGGTTAGTTAGGG...................................................	26	20	0.15	3	0	0	0	3	0
......................................................................................................................................................................................................................TAATTCTACGGTTAGTTAGGGAAGGAA.............................................	27	16	0.13	2	0	1	0	1	0
......................................................................................................................................................................................................................................TAGGGAAGGAAGGTTAATCAAGAGAAT.............................	27	12	0.08	1	0	1	0	0	0
................................................................................................................................................................................................................................................AGGTTAATCAAGAGAAGTCTACTAGAA...................	27	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................TACGGTTAGTTAGGGAAGGAAGGTT.........................................	25	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................CAAGCATAATTCTACGGTTAGTTAGGG...................................................	27	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................TAATTCTACGGTTAGTTAGGGAAGG...............................................	25	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................AGCATAATTCTACGGTTAGTTAGGGA..................................................	26	20	0.05	1	0	1	0	0	0

dp5

CTGT-------------------------------------------------------------------------------------AT----------AAAATATCTAGTAAGTCTAA---TAGGAATCATGAAGTTTATGCGGC---TCAACAGATCAGGACTGTCTATGTCACCCCCGATCAAGTTGTGCATAAAAATCACACCAAGCATTTTTCTACGGTTAACTAAGGATGGGAGGTTTACTGAAAACAGTCTACTAGAGTAAAA--------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................................................................TTTCTACGGTTAACTAAGGATGGGA.............................................	25	20	44.95	899	0	859	0	0	0	0	40	0	0	0
............................................................................................................................................................................................................................TACGGTTAACTAAGGATGGGAGGTT.........................................	25	20	35.30	706	0	706	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TCTACGGTTAACTAAGGATGGGAG............................................	24	20	17.55	351	0	351	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TACGGTTAACTAAGGATGGGAG............................................	22	20	11.30	226	0	0	0	0	0	0	0	0	226	0
.........................................................................................................................................................................................................................TTCTACGGTTAACTAAGGATGGGAG............................................	25	20	5.85	117	0	0	0	0	0	0	0	117	0	0
............................................................................................................................TAGGAATCATGAAGTTTATGCGGC---T......................................................................................................................................	25	2	3.00	6	0	2	0	0	1	0	0	3	0	0
........................................................................................................................................................................................................................TTTCTACGGTTAACTAAGGATGGG..............................................	24	20	2.95	59	0	0	0	0	59	0	0	0	0	0
.........................................................................................................................................................................................................................TTCTACGGTTAACTAAGGATGGGA.............................................	24	20	2.95	59	0	0	0	0	0	0	59	0	0	0
...........................................................................................................................................................................................................................CTACGGTTAACTAAGGATGGGAGG...........................................	24	20	1.70	34	0	0	0	0	0	0	34	0	0	0
...........................................................................................................................................................................................................................CTACGGTTAACTAAGGATGGGAGGT..........................................	25	20	1.15	23	0	23	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................ACGGTTAACTAAGGATGG...............................................	18	20	1.15	23	0	23	0	0	0	0	0	0	0	0
............................................................................................................................TAGGAATCATGAAGTTTATGCGG...........................................................................................................................................	23	3	1.00	3	0	0	0	0	0	0	0	1	2	0
............................................................................................................................TAGGAATCATGAAGTTTATGCGGC---.......................................................................................................................................	24	3	1.00	3	0	0	0	0	0	0	0	1	2	0
...............................................................................................................................................................TCAGGACTGTCTATGTCACCCC.........................................................................................................	22	3	0.67	2	0	0	0	0	0	0	0	0	2	0
............................................................................................................................................TATGCGGC---TCAACAGATCAGGA.........................................................................................................................	22	3	0.67	2	0	1	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................TCACACCAAGCATTTTTCTACGGT............................................................	24	20	0.55	11	0	11	0	0	0	0	0	0	0	0
.................................................................................................................................ATCATGAAGTTTATGCGGC---TCAACA.................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................AGGAATCATGAAGTTTATGCGGC---T......................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................ATCATGAAGTTTATGCGGC---TC.....................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................TTTCTACGGTTAACTAAGGATGGGT.............................................	25	20	0.50	10	0	10	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GTCTATGTCACCCCCGATCAAGTTG..............................................................................................	25	10	0.50	5	0	5	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TATGTCACCCCCGATCAAGTTGTGCA..........................................................................................	26	11	0.45	5	0	4	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................TTCTACGGTTAACTAAGGATGGG..............................................	23	20	0.45	9	0	0	0	0	0	0	0	0	9	0
...........................................................................................................................................TTATGCGGC---TCAACAGATCAGGAAA.......................................................................................................................	25	5	0.40	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TACGGTTAACTAAGGATGGG..............................................	20	20	0.40	8	0	0	0	0	8	0	0	0	0	0
............................................................................................................................................TATGCGGC---TCAACAGATCAGGAC........................................................................................................................	23	3	0.33	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................CAACAGATCAGGACTGTCTATGTCACCCC.........................................................................................................	29	3	0.33	1	0	0	0	0	0	0	0	0	1	0
........................................................................................................................A---TAGGAATCATGAAGTTTATGCGGC---.......................................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................TGCGGC---TCAACAGATCAGGACTGTC....................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................TGCGGC---TCAACAGATCAGGA.........................................................................................................................	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................TTATGCGGC---TCAACAGATCAGGA.........................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................TAAGTCTAA---TAGGAATCATGAAGTT..................................................................................................................................................	25	3	0.33	1	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................TTTCTACGGTTAACTAAGGATGGGAT............................................	26	20	0.30	6	0	5	1	0	0	0	0	0	0	0
......................................................................................................................................................................TGTCTATGTCACCCCCGATCAAGTTG..............................................................................................	26	10	0.30	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................TGTCTATGTCACCCCCGATCAAG.................................................................................................	23	10	0.30	3	0	2	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................TCTACGGTTAACTAAGGATGGG..............................................	22	20	0.25	5	0	0	5	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTAACTAAGGATGGGAGGTTTAC......................................	23	20	0.25	5	0	0	0	0	0	0	1	4	0	0
......................................................................................................................................GAAGTTTATGCGGC---TCAACAGA...............................................................................................................................	22	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTAACTAAGGATGGGAGGTTTACT.....................................	24	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................TTTTCTACGGTTAACTAAGGA..................................................	21	20	0.20	4	0	0	0	0	0	0	0	4	0	0
..............................................................................................................................................TGCGGC---TCAACAGATCAGGAAA.......................................................................................................................	22	6	0.17	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TAAGGATGGGAGGTTTACT.....................................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TACGGTTAACTAAGGATGGGAGGG..........................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TACGGTTAACTAAGGATGGGAGC...........................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................AGCATTTTTCTACGGTTAACT.......................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
........................................................................................................................................................................TCTATGTCACCCCCGATCAAGTT...............................................................................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................CTATGTCACCCCCGATCAAGT................................................................................................	21	10	0.10	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................TTTTCTACGGTTAACTAAGG...................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TTTTTCTACGGTTAACTAAGGATGGGA.............................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................TGTCTATGTCACCCCCGATCAAGT................................................................................................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CGGTTAACTAAGGATGGGAGG...........................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	2
.......................................................................................................................................................................GTCTATGTCACCCCCGATCAAGTTGTGCA..........................................................................................	29	10	0.10	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................TGTCACCCCCGATCAAGTTGT.............................................................................................	21	11	0.09	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CACCCCCGATCAAGTTGTGC...........................................................................................	20	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................CTGTCTATGTCACCCCCGAT.....................................................................................................	20	11	0.09	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TACGGTTAACTAAGGATGGT..............................................	20	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................TTCTACGGTTAACTAAGGATGGGAGC...........................................	26	20	0.05	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................CAAGCATTTTTCTACGGTTA..........................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................CAAGCATTTTTCTACGGTTAACTAA.....................................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................................CACACCAAGCATTTTTCTACGGTT...........................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TCACACCAAGCATTTTTCTACGC.............................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CTACGGTTAACTAAGGATGGGAGGTT.........................................	26	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................TTCTACGGTTAACTAAGGATGGGC.............................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TTCTACGGTTAACTAAGGATGGT..............................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................TTTATGCGGC---TCAACAGA...............................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TACGGTTAACTAAGGATGGGT.............................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................TAACTAAGGATGGGAGGT..........................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CCAAGCATTTTTCTACGGTTAACTA......................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GCATTTTTCTACGGTTAACTAAGGA..................................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................TTCTACGGTTAACTAAGGATGGGT.............................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TTTCTACGGTTAACTAAGGATGG...............................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................AACTAAGGATGGGAG............................................	15	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................................GTTTATGCGGC---TCAACAGATCAG...........................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

TCCGC------------------------------------------------------------------------------------CCCCCTCCAAACATAAAA-TTTCTAGTCAGTCTAATAGGAATCGTGAAGTTTATGCGGC---TCAACAGATCAGGGCTGTCTATGTCACCCCCGATCAAGTTATGCATAAATATCACACCAAGCATTTTTCTACGCTTAACTAAGGATGGGAGGTTTACTAATAGTAGTCTTCTAGAGTAAGA--------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................................................TCAACAGATCAGGGCTGTCTATGTC..............................................................................................................	25	20	0.65	13	13	0	0	0	0	0
............................................................................................................................................................................................................................TACGCTTAACTAAGGATGGGAGGTT.........................................	25	3	0.33	1	0	1	0	0	0	0
............................................................................................................................................................................................................................TACGCTTAACTAAGGATGG...............................................	19	3	0.33	1	0	1	0	0	0	0
...............................................................................................................................................GCGGC---TCAACAGATCAGGGC........................................................................................................................	20	20	0.20	4	0	4	0	0	0	0
.........................................................................................................................................................AACAGATCAGGGCTGTCTATGTCACCC..........................................................................................................	27	20	0.10	2	0	2	0	0	0	0
...........................................................................................................................................................CAGATCAGGGCTGTCTATGTCA.............................................................................................................	22	20	0.10	2	0	2	0	0	0	0
......................................................................................................................................................................TGTCTATGTCACCCCCGATCAAGT................................................................................................	24	19	0.05	1	0	0	1	0	0	0
.......................................................................................................................................................................GTCTATGTCACCCCCGATCAAG.................................................................................................	22	19	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................AGGATGGGAGGTTTACTAATAGTAG.............................	25	20	0.05	1	0	1	0	0	0	0
.............................................................................................................TTCTAGTCAGTCTAATAGGAATCGT........................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
....................................................................................................................CAGTCTAATAGGAATCGTGAA.....................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................TCGTGAAGTTTATGCGGC---TCAACAGATA.............................................................................................................................	28	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................TTATGCGGC---TCAACAGATCAGGG.........................................................................................................................	23	20	0.05	1	0	0	1	0	0	0
............................................................................................................................TAGGAATCGTGAAGTTTATG..............................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0

droAna3

GCT----------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTGTCTATATTTCCATAAATAAGATTATATAGAAACATGACACCCAGCATCGTTCTACGATTAGTTAATGATGGTAAGTTGATTAGTAAAAGTCTACTATGATAAGA--------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................................TAAGATTATATAGAAACATGACACC.............................................................................	25	20	9.30	186	0	186	0	0	0	0
..............................................................................................................................................................................................TATATAGAAACATGACACCCAGCATCGT....................................................................	28	20	2.15	43	0	43	0	0	0	0
....................................................................................................................................................................................TAAATAAGATTATATAGAAACATGACACC.............................................................................	29	20	1.35	27	0	27	0	0	0	0
.............................................................................................................................................................................................TTATATAGAAACATGACACCCAGCAT.......................................................................	26	20	0.45	9	0	9	0	0	0	0
..................................................................................................................................................................................................TAGAAACATGACACCCAGCATCGTT...................................................................	25	20	0.25	5	5	0	0	0	0	0
.............................................................................................................................................................................................TTATATAGAAACATGACACCC............................................................................	21	20	0.25	5	5	0	0	0	0	0
.................................................................................................................................................................................................ATAGAAACATGACACCCAGCATCGT....................................................................	25	20	0.25	5	5	0	0	0	0	0
...................................................................................................................................................................................................................................AGTTAATGATGGTAAGTT.........................................	18	5	0.20	1	0	0	1	0	0	0
................................................................................................................................................................................................TATAGAAACATGACACCCA...........................................................................	19	20	0.10	2	0	2	0	0	0	0
.........................................................................................................................................................................................................................................TGATGGTAAGTTGATTAGTAAAAGT............................	25	20	0.10	2	2	0	0	0	0	0
.........................................................................................................................................................................................AAGATTATATAGAAACATGACACCCA...........................................................................	26	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................AGAAACATGACACCCAGCATCGT....................................................................	23	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................TTATATAGAAACATGACACCCAGCATC......................................................................	27	20	0.05	1	0	0	1	0	0	0
.............................................................................................................................................................................................................................................GGTAAGTTGATTAGTAAAAGTCTAC........................	25	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................TAGAAACATGACACCCAGCATCGTTCTA................................................................	28	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................TGACACCCAGCATCGTTC..................................................................	18	20	0.05	1	0	0	1	0	0	0
............................................................................................................................................................................................ATTATATAGAAACATGACACC.............................................................................	21	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................ATAGAAACATGACACCCAGCATC......................................................................	23	20	0.05	1	1	0	0	0	0	0

droBip1

GCT----------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTATCTACATCCCCGTTGATAAGGTTATGCAGAAAAACTACACCGAGCATTGTCCTACGATTTGTTAAGCTAGGTAAGTTAATAAGCAAAAGTCTGCTACTGTAGGA--------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCAGC------------------------------------------------------------------------------------AC----------GT---------------------------------------------------CCAACTCTAAGCTCTCAACATCACCATTTATTAAGTTGTTAAGAAATACGACACCAAGCATCGTTCTACGGTTAGCTAGAGAGGGTT-ATTAATTAATAGAACTCTACTAGAATAGGA--------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGT-------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCACTGTCAATTTCACCACGTATAAGGTTATGAATAAATATAGTACCAAGCATCGTTCTACGATTAGTAAAGGAGGGCAAGTTAATAAGGAGCAATCTATTAGGATAGGA--------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCGACAAGGAGCTAAAGCGTCGGCGCGCGGCCGAGGAGAAACTGCACGAGGTAAGTCCTTAAATATATAAATATATTGTTTCTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAA--------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCAGA------------------------------------------------------------------------------------AC----------ATAATACTCTGAAAGGCTCATGCAAG-------------------GC---ATACCAAGTCGGGGCAGTCAATATCACCATGTATAAGGTTATAAATGAAGATAGTACCAAGCATCGTTCTACGGTTGGCTAGGGAGGGTAAATTAATCAACAGAAGTCTACTAGAATAAGA--------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

A----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAATGTCACCTCTTATTAGATTTTGTATAAAAATAGTACCAAGCCTTGTTCTACGATTTACAAGTGTAGGTAAATTAAGCAATTCTAATCTACTCTCGTAGGA--------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

A----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGACGGCGCCAGTCATGAGTTTGTGAAGTAATATCACACCATAACAGGTCCGACGATCCTCTAAGGTAGGTAGATCCAAGAGGCGCAACCTGTCTCTATAAGAA----------GGC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGCG----------------------------------------------------------------------------------------------------------------------------------------------GC---CTAGAACGGCCTGGCTATCAATTTCACCATTTAGAAGATTATGGATAAAGACGACACCAAGCATAGTCCTACGATTAGCGAGGGATGGCAAATTGATTAGTAAGAGTCTACTTTTATAAGAGGGAAGGTGTATGC	Size	Hit Count	Total Norm	Total
No Reads

dm3

TCAGA------------------------------------------------------------------------------------AC----------ATAATACTCTGTATTATG-----TTGTAACAGAGAAGT-TAGACGGCTTCTAACCAAGTCGGGACTCCCAACTTCACCACGAATAAGCTTACAAATAAAGACTGTTCCAAGCATAGTTCTACGATTAGCTAGGGAAGGTAAATTAATTAAAATTAGTCTACTAGAATA-----------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................................GCTTCTAACCAAGTCGGGAC........................................................................................................................	20	1	28.00	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	10	1	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TAGTTCTACGATTAGCTAGGGAAGG...............................................	25	2	17.00	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	6	0	6	0	0	5	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TAGTTCTACGATTAGCTAGGGA..................................................	22	6	16.50	99	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	2	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	4	4	0	0	0	0	0	0	0	0	0	7	0	3	0	13	1	0	0	0	0	0	0	0	1	3	3	13	2	1	1	3	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	4	2	0	0	0	0	0	0
...................................................................................................................................................................................................................GCATAGTTCTACGATTAGCTAGGGAA.................................................	26	2	14.00	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	1	0	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TAGTTCTACGATTAGCTAGGGAAGGTA.............................................	27	2	14.00	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	5	2	0	0	4	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................GCATAGTTCTACGATTAGCTAGGGA..................................................	25	5	13.20	66	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	1	0	3	0	0	1	0	1	0	5	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	2	0	0	0	0	0	1	0	0	0	0	0	7	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	2	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	4	1	0	0	0	0	0	0
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........................................................................................................................................................................................................................GTTCTACGATTAGCTAGGGAT.................................................	21	7	0.29	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GATTAGCTAGGGAAGGTAAAT..........................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GATTAGCTAGGGAAGGTAAATT.........................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTAGCTAGGGAAGGTAAATTAATTA....................................	25	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSim2

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCACGAATAAGCTTACAAATAAAGACTGTTCCAAGCATAGTTCTACGGTTAGCTAGGGAAGGTAAATTAATTAAAAGTAGTCTACTGGAATAAGG--------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCATAGTTCT.................................................................	24	20	177.15	3543	0	1	0	27	744	0	0	0	28	51	29	0	2663	0	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCATAGTTCTA................................................................	25	20	136.10	2722	0	0	0	0	0	0	0	11	0	0	0	0	2711	0	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCATAGTTC..................................................................	23	20	130.90	2618	0	0	0	20	0	93	0	0	0	24	0	1	2480	0	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCATAGTTCTAC...............................................................	26	20	94.55	1891	0	0	0	0	0	0	5	9	0	0	14	0	1863	0	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCATAGTTCTACGGT............................................................	29	20	58.55	1171	0	0	0	8	0	0	0	1014	143	0	0	0	2	4	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCATAGT....................................................................	21	20	52.35	1047	0	0	0	0	855	190	2	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCATAGTTCTACG..............................................................	27	20	20.70	414	0	0	0	11	0	0	0	12	7	0	7	0	275	102	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCATAGTT...................................................................	22	20	18.35	367	0	0	1	1	94	0	0	5	0	11	0	0	197	58	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCATAGTTCTACGG.............................................................	28	20	17.65	353	0	0	0	86	0	0	57	0	0	106	0	0	74	30	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCA........................................................................	17	20	16.15	323	0	0	0	0	0	0	2	0	0	10	311	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................AAGTAGTCTACTGGAATAAGG--------------	21	20	13.65	273	0	1	0	1	222	0	9	3	0	0	36	1	0	0	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCATAGTTCTAT...............................................................	26	20	11.40	228	0	0	0	1	0	0	0	0	0	0	0	0	110	117	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCATAG.....................................................................	20	20	9.25	185	0	0	0	0	0	0	0	0	0	0	33	0	0	152	0	0	0
....................................................................................................................................................................................................................................................TAATTAAAAGTAGTCTACTGGAA...................	23	20	8.30	166	0	0	0	0	0	0	0	0	95	19	0	0	52	0	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGC.........................................................................	16	20	7.45	149	0	0	0	0	0	0	0	0	2	0	147	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................AAGTAGTCTACTGGAATA.................	18	20	6.15	123	0	0	0	0	122	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................AAAGTAGTCTACTGGAAT..................	18	20	5.90	118	0	0	0	0	118	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TTAAAAGTAGTCTACTGGA....................	19	20	5.80	116	0	0	0	0	0	113	1	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TAATTAAAAGTAGTCTACTGGAATAAGG--------------	28	20	5.50	110	0	0	0	0	0	0	78	0	26	3	0	0	3	0	0	0	0
...................................................................................................................................................................................................................GCATAGTTCTACGGTTAGC........................................................	19	20	5.35	107	0	0	0	0	107	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TAATTAAAAGTAGTCTACTGGA....................	22	20	4.40	88	0	0	0	0	0	0	0	15	53	14	2	0	0	4	0	0	0
...............................................................................................................................................................................................................................................TAAATTAATTAAAAGTAGTCTACTGGAA...................	28	20	4.25	85	0	0	0	0	0	0	8	29	9	37	0	0	2	0	0	0	0
...............................................................................................................................................................................................................................................TAAATTAATTAAAAGTAGTCTACTGGA....................	27	20	3.90	78	0	0	0	0	0	0	0	41	17	18	0	0	2	0	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCATA......................................................................	19	20	3.60	72	0	0	4	0	0	0	0	3	13	44	0	0	8	0	0	0	0
...................................................................................................................................................................................................................................................TTAATTAAAAGTAGTCTACTGGAATA.................	26	20	3.60	72	0	0	0	0	0	0	16	0	25	26	5	0	0	0	0	0	0
..................................................................................................................................................................................................AATAAAGACTGTTCCAAGCAT.......................................................................	21	20	3.15	63	0	0	0	0	0	0	0	11	0	0	0	0	21	31	0	0	0
....................................................................................................................................................................................................................................................TAATTAAAAGTAGTCTACTGGAAT..................	24	20	2.15	43	0	0	0	0	0	0	0	0	0	11	0	0	30	2	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCATAA.....................................................................	20	20	1.95	39	0	0	0	0	0	0	0	0	0	0	0	0	0	39	0	0	0
.......................................................................................................................................................................................................................................................TTAAAAGTAGTCTACTGGAATA.................	22	20	1.90	38	0	0	0	0	0	0	15	0	0	5	17	0	0	1	0	0	0
.................................................................................................................................................................................................................AAGCATAGTTCTACGGTTAGCTAGGGA..................................................	27	20	1.90	38	0	0	0	0	0	0	0	17	12	7	2	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TAATTAAAAGTAGTCTACTGGAATA.................	25	20	1.80	36	0	0	0	0	0	0	0	0	0	0	0	0	30	6	0	0	0
......................................................................................................................................................................................................AAGACTGTTCCAAGCATAGTTCTACGGT............................................................	28	20	1.65	33	0	0	0	4	0	0	8	13	1	5	0	0	1	1	0	0	0
.......................................................................................................................................................................................................................................................TTAAAAGTAGTCTACTGGAATAAGG--------------	25	20	1.60	32	0	0	0	0	0	0	7	14	11	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAG..........................................................................	15	20	1.50	30	0	0	0	0	0	0	0	0	0	0	30	0	0	0	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCATAGTTCTACGC.............................................................	28	20	1.35	27	0	0	0	1	0	0	0	0	0	26	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TAATTAAAAGTAGTCTACTGGAATAAG...............	27	20	1.35	27	0	0	0	0	0	0	15	5	5	0	0	0	2	0	0	0	0
...................................................................................................................................................................................................................................................TTAATTAAAAGTAGTCTACTGGAAT..................	25	20	1.30	26	0	0	0	0	0	0	11	4	10	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TAATTAAAAGTAGTCTACTGGAATAA................	26	20	1.20	24	0	0	0	0	0	0	0	0	3	0	0	0	18	3	0	0	0
........................................................................................................................................................................................................................................................TAAAAGTAGTCTACTGGAATAAGG--------------	24	20	1.15	23	0	0	0	0	0	0	9	13	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................TTAATTAAAAGTAGTCTACTGGAA...................	24	20	1.10	22	0	0	0	0	0	0	13	6	0	0	0	0	2	1	0	0	0
......................................................................................................................................................................................................................................TAGGGAAGGTAAATTAATTAAAAGTAGTC...........................	29	12	1.08	13	0	0	0	2	0	0	1	4	6	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCAT.......................................................................	18	20	1.05	21	0	0	0	0	0	0	0	0	0	20	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................TAGCTAGGGAAGGTAAATTAATTAAA..................................	26	14	1.00	14	0	0	0	2	0	0	0	1	5	4	1	0	1	0	0	0	0
............................................................................................................................................................................................................................TACGGTTAGCTAGGGAAGGTAAAT..........................................	24	18	1.00	18	0	0	0	0	0	0	2	2	3	3	0	0	5	3	0	0	0
..................................................................................................................................................................................................................................TAGCTAGGGAAGGTA.............................................	15	20	1.00	20	0	0	0	0	0	0	0	0	0	0	20	0	0	0	0	0	0
............................................................................................................................................................................................................................TACGGTTAGCTAGGGAAGGTAAATT.........................................	25	18	1.00	18	0	0	0	1	0	0	4	3	4	0	0	1	5	0	0	0	0
......................................................................................................................................................................................................AAGACTGTTCCAAGCATAGTTCTA................................................................	24	20	0.95	19	0	0	0	2	0	0	0	0	0	0	0	0	17	0	0	0	0
...................................................................................................................................................................................................................................................TTAATTAAAAGTAGTCTACTGGA....................	23	20	0.90	18	0	0	0	0	0	0	0	0	9	9	0	0	0	0	0	0	0
............................................................................................................................................................................................................GTTCCAAGCATAGTTCTAC...............................................................	19	20	0.90	18	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TTAAAAGTAGTCTACTGGAATAAG...............	24	20	0.90	18	0	0	0	0	0	0	0	11	2	5	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TAGGGAAGGTAAATTAATTAAAAGTA..............................	26	14	0.86	12	0	0	0	0	0	0	1	4	5	1	0	0	1	0	0	0	0
......................................................................................................................................................................................................AAGACTGTTCCAAGCATAGTTCTAC...............................................................	25	20	0.85	17	0	0	0	13	0	0	0	0	0	0	0	0	4	0	0	0	0
....................................................................................................................................................................................................................................................TAATTAAAAGTAGTCTACTGGAATT.................	25	20	0.75	15	0	0	0	0	0	0	9	0	6	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GACTGTTCCAAGCATAGTTCTACGGT............................................................	26	20	0.75	15	0	0	0	0	0	0	3	6	3	1	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................TAATTAAAAGTAGTCTACTGG.....................	21	20	0.75	15	0	0	0	0	0	0	3	2	1	2	1	0	4	2	0	0	0
.....................................................................................................................................................................................................................................................AATTAAAAGTAGTCTAC........................	17	20	0.70	14	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0
................................................................................................................................................................................................................CAAGCATAGTTCTACGGTTAGCTAGGGA..................................................	28	20	0.70	14	0	0	0	0	0	0	4	6	3	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TAGGGAAGGTAAATTAATTAAAAGTAGT............................	28	13	0.69	9	0	0	0	0	0	0	1	4	3	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCATAGTA...................................................................	22	20	0.65	13	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0
................................................................................................................................................................................................................................................AAATTAATTAAAAGTAGTCTACTGGAA...................	27	20	0.65	13	0	0	0	0	0	0	0	3	5	3	0	0	2	0	0	0	0
..............................................................................................................................................................................................TACAAATAAAGACTGTTCCAAGCATA......................................................................	26	20	0.65	13	0	0	0	0	0	0	1	0	0	3	0	0	9	0	0	0	0
..................................................................................................................................................................................................................................TAGCTAGGGAAGGTAAATTAATTAAAA.................................	27	14	0.64	9	0	0	0	0	0	0	0	0	6	3	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTAGCTAGGGAAGGTAAATTAATTAAA..................................	27	14	0.64	9	0	0	0	0	0	0	0	0	7	1	0	0	1	0	0	0	0
...................................................................................................................................................................................................ATAAAGACTGTTCCAAGCATA......................................................................	21	20	0.60	12	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0
............................................................................................................................................................................................................GTTCCAAGCATAGTTCTACG..............................................................	20	20	0.60	12	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0
.......................................................................................................................................................................................................AGACTGTTCCAAGCATAGTTC..................................................................	21	20	0.60	12	0	0	0	0	0	0	0	0	0	0	0	0	9	3	0	0	0
....................................................................................................................................................................................................TAAAGACTGTTCCAAGCATAGTTC..................................................................	24	20	0.55	11	0	0	0	0	0	0	0	1	0	0	0	0	7	3	0	0	0
............................................................................................................................................................................................................................TACGGTTAGCTAGGGAAGGTAAATTAA.......................................	27	15	0.53	8	0	0	0	0	0	0	0	0	0	0	1	0	6	1	0	0	0
........................................................................................................................................................................................................................................................TAAAAGTAGTCTACTGGAAT..................	20	20	0.50	10	0	0	0	0	0	0	2	1	0	2	5	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TTAAAAGTAGTCTACTGGAA...................	20	20	0.50	10	0	0	0	0	0	0	4	0	5	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................TACGGTTAGCTAGGGAAGGTAAATTAAT......................................	28	13	0.46	6	0	0	0	0	0	0	2	0	4	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TTAAAAGTAGTCTACTGGAAT..................	21	20	0.45	9	0	0	0	0	0	0	0	4	2	0	2	0	0	1	0	0	0
.............................................................................................................................................................................................TTACAAATAAAGACTGTTCCAAGCA........................................................................	25	20	0.45	9	0	0	0	0	0	0	2	0	0	1	0	0	2	4	0	0	0
..............................................................................................................................................................................................TACAAATAAAGACTGTTCCAAGCATAG.....................................................................	27	20	0.45	9	0	0	0	0	0	0	1	0	0	0	0	0	8	0	0	0	0
.......................................................................................................................................................................................................................................................TTAAAAGTAGTCTACTGGAATAA................	23	20	0.45	9	0	0	0	0	0	0	4	0	4	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................TAAAGACTGTTCCAAGCATAG.....................................................................	21	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCATAGTTCTACA..............................................................	27	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0
............................................................................................................................................................................................................................TACGGTTAGCTAGGGAAGGTAAATTA........................................	26	18	0.44	8	0	0	0	0	0	0	0	0	4	0	0	0	4	0	0	0	0
..................................................................................................................................................................................................................................TAGCTAGGGAAGGTAAATTAATTAAAAG................................	28	14	0.43	6	0	0	0	0	0	0	0	2	3	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................TACGGTTAGCTAGGGAAGGTA.............................................	21	19	0.42	8	0	0	0	0	0	0	1	0	3	0	3	0	1	0	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCATAGTTCTC................................................................	25	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	4	4	0	0	0
......................................................................................................................................................................................................AAGACTGTTCCAAGCATAGTTCTACGG.............................................................	27	20	0.40	8	0	0	0	5	0	0	0	2	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................AAATAAAGACTGTTCCAAGCA........................................................................	21	20	0.40	8	0	0	0	0	0	0	0	1	0	0	0	0	0	7	0	0	0
......................................................................................................................................................................................................AAGACTGTTCCAAGCATAGTTCT.................................................................	23	20	0.35	7	0	0	2	0	0	0	0	0	0	0	0	0	5	0	0	0	0
........................................................................................................................................................................................................................................................TAAAAGTAGTCTACTGGAA...................	19	20	0.35	7	0	0	0	0	0	0	0	0	3	0	4	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TAAATTAATTAAAAGTAGTCTACTGGAAT..................	29	20	0.35	7	0	0	0	0	0	0	2	1	3	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TTAATTAAAAGTAGTCTACTGGAATAAGG--------------	29	20	0.35	7	0	0	0	0	0	0	2	5	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TACGGTTAGCTAGGGAAGGT..............................................	20	20	0.35	7	0	0	0	0	0	0	0	0	2	1	3	0	0	1	0	0	0
.................................................................................................................................................................................................................................................AATTAATTAAAAGTAGTCTACTGGA....................	25	20	0.35	7	0	0	0	0	0	0	0	0	3	4	0	0	0	0	0	0	0
.............................................................................................................................................................................................TTACAAATAAAGACTGTTCCAAGCAT.......................................................................	26	20	0.35	7	0	0	0	0	0	0	0	0	0	3	0	0	4	0	0	0	0
..................................................................................................................................................................................................................................TAGCTAGGGAAGGTAAATT.........................................	19	20	0.35	7	0	0	0	0	0	0	0	1	0	0	6	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTAAAAGTAGTCTACTGGA....................	20	20	0.30	6	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTAAAAGTAGTCTACTGGAATAAGG--------------	26	20	0.30	6	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GCATAGTTCTACGGTTAGCTAGGGA..................................................	25	20	0.30	6	0	0	0	0	0	0	0	0	2	0	4	0	0	0	0	0	0
.......................................................................................................................................................................................................AGACTGTTCCAAGCATAGTTCTACGGT............................................................	27	20	0.30	6	0	0	0	0	0	0	0	2	2	2	0	0	0	0	0	0	0
.........................................................................................................................................................................................................ACTGTTCCAAGCATAGTTCTACGGTT...........................................................	26	20	0.30	6	0	0	0	0	0	0	4	1	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................AGCATAGTTCTACGGTTAGCTAGGGA..................................................	26	20	0.30	6	0	0	0	0	0	0	2	1	1	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................AAATTAATTAAAAGTAGTCTACTGGA....................	26	20	0.30	6	0	0	0	0	0	0	0	3	1	2	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TAGCTAGGGAAGGTAAATTAATTAAAAGT...............................	29	14	0.29	4	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TACGGTTAGCTAGGGAAGGTAAA...........................................	23	18	0.28	5	0	0	0	0	0	0	0	2	2	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................TTAAAAGTAGTCTACTGGAATAAA...............	24	20	0.25	5	0	0	0	0	0	0	0	0	1	1	3	0	0	0	0	0	0
......................................................................................................................................................................................................................TAGTTCTACGGTTAGCTAGGG...................................................	21	20	0.25	5	0	0	0	0	0	0	1	0	0	0	4	0	0	0	0	0	0
.......................................................................................................................................................................................................................AGTTCTACGGTTAGCTAGGGA..................................................	21	20	0.25	5	0	0	0	0	0	0	0	2	0	0	3	0	0	0	0	0	0
..............................................................................................................................................................................................TACAAATAAAGACTGTTCCAAGCA........................................................................	24	20	0.25	5	0	0	0	0	0	0	0	0	0	1	0	0	4	0	0	0	0
.........................................................................................................................................................................................................ACTGTTCCAAGCATAGTTCTACGGT............................................................	25	20	0.25	5	0	0	0	0	0	0	3	1	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TACAAATAAAGACTGTTCCAAGCATAGT....................................................................	28	20	0.25	5	0	0	0	0	0	0	4	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TAGTTCTACGGTTAGCTAGGGA..................................................	22	20	0.25	5	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TAGCTAGGGAAGGTAAATTAATTAA...................................	25	17	0.24	4	0	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................TCTACGGTTAGCTAGGGAAGGTAAAT..........................................	26	18	0.22	4	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTAGCTAGGGAAGGTAAATTAATTAAAAG................................	29	14	0.21	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TGTTCCAAGCATAGTTCTACGGTT...........................................................	24	20	0.20	4	0	0	0	0	0	0	1	0	2	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TAAAAGTAGTCTACTGGAATAA................	22	20	0.20	4	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TTAAAAGTAGTCTACTGGAATT.................	22	20	0.20	4	0	0	0	0	0	0	2	0	1	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................ATTAATTAAAAGTAGTCTACTGGAA...................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	0	0
............................................................................................................................................................................................................GTTCCAAGCATAGTTCTACGG.............................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TAAAAGTAGTCTACTGGAATA.................	21	20	0.20	4	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................GTTCCAAGCATAGTT...................................................................	15	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
...............................................................................................................................................................................................................CCAAGCATAGTTCTACGGTTA..........................................................	21	20	0.20	4	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TACGGTTAGCTAGGGA..................................................	16	20	0.20	4	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................AAAGTAGTCTACTGGAATAAGG--------------	22	20	0.20	4	0	0	0	0	0	0	0	2	0	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................AAGACTGTTCCAAGCA........................................................................	16	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCAA.......................................................................	18	20	0.20	4	0	0	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................AATTAATTAAAAGTAGTCTACTGGAA...................	26	20	0.20	4	0	0	0	0	0	0	0	2	1	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TAGCTAGGGAAGGTAAATTAATT.....................................	23	17	0.18	3	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................TAGCTAGGGAAGGTAAATTAATTA....................................	24	17	0.18	3	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTAGCTAGGGAAGGTAAATTAATT.....................................	24	17	0.18	3	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................TACAAATAAAGACTGTTCCAAGCAT.......................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TAGCTAGGGAAGGTAAAT..........................................	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
....................................................................................................................................................................................................TAAAGACTGTTCCAAGCATAGTTCTACGGT............................................................	30	20	0.15	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................TAGTCTACTGGAATAAGG--------------	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..........................................................................................................................................................................................................CTGTTCCAAGCATAGTTCTACGGTT...........................................................	25	20	0.15	3	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TTAATTAAAAGTAGTCTACTGGAATAAA...............	28	20	0.15	3	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TCCAAGCATAGTTCTACGGTTAGCTAGGGA..................................................	30	20	0.15	3	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................AAGACTGTTCCAAGCATAGTT...................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
............................................................................................................................................................................................................................................................AGTAGTCTACTGGAATAAGG--------------	20	20	0.15	3	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ATAGTTCTACGGTTAGCTAGG....................................................	21	20	0.15	3	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TAATTAAAAGTAGTCTAC........................	18	20	0.15	3	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................TCCAAGCATAGTTCTACGGTTAGC........................................................	24	20	0.15	3	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TTAATTAAAAGTAGTCTACTGGAATT.................	26	20	0.15	3	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................TAGTCTACTGGAATAA................	16	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TTAATTAAAAGTAGTCTACTGGAATAA................	27	20	0.15	3	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................GGGAAGGTAAATTAATTAAAAGTAGT............................	26	14	0.14	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTAGCTAGGGAAGGTAAATTAATTAAAA.................................	28	14	0.14	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TAGGGAAGGTAAATTAATTAAAAGT...............................	25	15	0.13	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GGTTAGCTAGGGAAGGTAAATTAAT......................................	25	16	0.13	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................TACGGTTAGCTAGGGAAGGTAAAA..........................................	24	18	0.11	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TCTACGGTTAGCTAGGGAAGGTAAATT.........................................	27	18	0.11	2	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................TCTACGGTTAGCTAGGGAAGGTAAA...........................................	25	18	0.11	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................................................................................................................................................TAGCTAGGGAAGGTAAA...........................................	17	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................................................................................................................................................................ATTAATTAAAAGTAGTCTACTGGAATA.................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TAGCTAGGGAAGGTAAATTAA.......................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................................................................................................................................AGCATAGTTCTACGGTTAGCT.......................................................	21	20	0.10	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TAATTAAAAGTAGTCTACTGGAATAAA...............	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..........................................................................................................................................................................................AGCTTACAAATAAAGACTGTTCCAAG..........................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TGTTCCAAGCATAGTTCTAC...............................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.............................................................................................................................................................................................TTACAAATAAAGACTGTTCCAAGCATA......................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.............................................................................................................................................................................................................................................................GTAGTCTACTGGAATAA................	17	20	0.10	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................AAGACTGTTCCAAGCAT.......................................................................	17	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AATTAAAAGTAGTCTACTGGAAT..................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ATAGTTCTACGGTTAGCT.......................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TAAATTAATTAAAAGTAGTCTACTGGAAA..................	29	20	0.10	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................ATTAATTAAAAGTAGTCTACTGGA....................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................AATTAATTAAAAGTAGTCTAC........................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATTAAAAGTAGTCTACTGGAA...................	21	20	0.10	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GCATAGTTCTACGGTTAGCTA......................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTAGCTAGGGAAGGT..............................................	15	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TAAATTAATTAAAAGTAGTCTACTGG.....................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
........................................................................................................................................................................................................GACTGTTCCAAGCATA......................................................................	16	20	0.10	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................ACTGTTCCAAGCATAGTT...................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTAGCTAGGGAAGGTA.............................................	16	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TAAAAGTAGTCTACTGGAATAAG...............	23	20	0.10	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TTAATTAAAAGTAGTCTACTGGAATAAG...............	28	20	0.10	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................CTGTTCCAAGCATAGTTC..................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TTAATTAAAAGTAGTCTACTGGAAA..................	25	20	0.10	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................AGTTCTACGGTTAGCTAGGG...................................................	20	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TCCAAGCATAGTTCTACGGTTAGCTA......................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................................................................................................................GACTGTTCCAAGCATAGTTCTACGGTT...........................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCATAGTTCTACGGTT...........................................................	30	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..................................................................................................................................................................................................AATAAAGACTGTTCCAAGCATA......................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
............................................................................................................................................................................................................................TACGGTTAGCTAGGGAA.................................................	17	20	0.10	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................AGCTTACAAATAAAGACTGTTCCAAGCA........................................................................	28	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TAAAAGTAGTCTACTGGA....................	18	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TACGGTTAGCTAGGGAAGG...............................................	19	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TTACAAATAAAGACTGTTCCAAGCATAG.....................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCATAGTTACG................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.............................................................................................................................................................................................................................ACGGTTAGCTAGGGA..................................................	15	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................CTGTTCCAAGCATAGTTCTAC...............................................................	21	20	0.10	2	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................AAAAGTAGTCTACTGGAATAA................	21	20	0.10	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TAATTAAAAGTAGTCTACTGGAAA..................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
...................................................................................................................................................................................................................................................TTAATTAAAAGTAGTCTACTGG.....................	22	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0

droSec2

AATAG------------------------------------------------------------------------------------------------------------------------------------------------------------GATAAAGTCAACATCCCCACGAATAAGCTTACAAATAAAGACTGTTCCAAGCTTAGTTCTACGGTTAGCTAGGGATGGTAAATTAATTAAAAGTAGTCTATTGGAATA-----------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................................................................................................................TAAAGTCAACATCCCCACGAATAAGCT................................................................................................	27	2	1.00	2	2	0	0	0
.....................................................................................................................................................................................................AAAGACTGTTCCAAGCTTAGTTCTACG..............................................................	27	3	0.67	2	2	0	0	0
......................................................................................................................................................................................................AAGACTGTTCCAAGCTTAGTTCTACG..............................................................	26	3	0.33	1	1	0	0	0
..............................................................................................................................................................................TCCCCACGAATAAGCTTACAAA..........................................................................................	22	20	0.05	1	1	0	0	0
............................................................................................................................................................................................................................TACGGTTAGCTAGGGATGGTAAA...........................................	23	20	0.05	1	0	0	0	1

droYak3

TCCCC------------------------------------------------------------------------------------TCTGCAGCCTA-ATAATACTCTGTAATAAATCTGCTTGGAACAGTGAAGTTTAGCCGAC---TAACCAAGTTGGGACTATCAACTTCTCCACAAATAAGGTTAAAAATAAAGACTGTTCCAAGCATCGTTCTACGATTAGCTTAGGAGGGTAAGTTAATTAACATTAGTCTACTGGAATAAGG--------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................................................TAAAGACTGTTCCAAGCATCGTTC..................................................................	24	20	7.25	145	0	145	0	0	0	0	0	0	0	0	0
.......................................................................................................................TCTGCTTGGAACAGTGAAGTTTAGCC.............................................................................................................................................	26	20	1.95	39	0	17	21	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................TAAAGACTGTTCCAAGCATCGTTCTAC...............................................................	27	20	0.55	11	0	11	0	0	0	0	0	0	0	0	0
.........................................................................................................................TGCTTGGAACAGTGAAGTTTAGCCGAC---.......................................................................................................................................	27	20	0.45	9	0	0	9	0	0	0	0	0	0	0	0
............................................................................................................................TTGGAACAGTGAAGTTTAGCCGAC---T......................................................................................................................................	25	20	0.35	7	0	0	7	0	0	0	0	0	0	0	0
......................................................................................................................ATCTGCTTGGAACAGTGAAGTTTAGCC.............................................................................................................................................	27	20	0.25	5	0	0	5	0	0	0	0	0	0	0	0
.............................................................................................................................TGGAACAGTGAAGTTTAGCCGAC---TAAC...................................................................................................................................	27	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
.............................................................................................................................TGGAACAGTGAAGTTTAGCCGAC---TAACC..................................................................................................................................	28	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
............................................................................................................................TTGGAACAGTGAAGTTTAGCCGAC---TAACC..................................................................................................................................	29	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................TGCTTGGAACAGTGAAGTTTAGCCGAC---T......................................................................................................................................	28	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................TTGGAACAGTGAAGTTTAGCCGAC---TAAC...................................................................................................................................	28	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TAAGTTAATTAACATTAGTCTACTG......................	25	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AATAAAGACTGTTCCAAG..........................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TAAAAATAAAGACTGTTCCAAGCAT.......................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................TGCTTGGAACAGTGAAGTTTAGCCGA...........................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................TTGGAACAGTGAAGTTTAGCCGAC---.......................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................AGTGAAGTTTAGCCGAC---TAACCAAG...............................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................CTGCTTGGAACAGTGAAGTTTAGCC.............................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................TGGAACAGTGAAGTTTAGCC.............................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................CTGCTTGGAACAGTGAAGTTTAGCCGAC---T......................................................................................................................................	29	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................AATAAGGTTAAAAATAAAGACTGTTC..............................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................AATCTGCTTGGAACAGTGAAGTTTAGC..............................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................TGCTTGGAACAGTGAAGTTTAGC..............................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................CAGTGAAGTTTAGCCGAC---TAACCAAG...............................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................TGGAACAGTGAAGTTTAGCCGAC---TA.....................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................TCTGCTTGGAACAGTGAAGTTTAGCCGA...........................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TAAAAATAAAGACTGTTCCAAGCATC......................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

A------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTATCAACTGCACCACATTTCAAATTACAAATAAAGACTGTTGCAAGCATTGTTCTACGGTTAGCTAGGGAAGGTAAATTTATTAACATTAGTCTACTGGAATA-----------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
........................................................................................................................................................................................................................GTTCTACGGTTAGCTAGGGAAGGT..............................................	24	5	2.80	14	0	0	0	0	0	0	14
.......................................................................................................................................................................................................................TGTTCTACGGTTAGCTAGGGAAGGT..............................................	25	4	1.25	5	0	0	0	0	0	0	5

dvi_9186

scaffold_12928:7050534-7050684 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-32.9	-32.8	-32.7