ID:

dvi_9158

 Coordinate:

scaffold_12928:6878794-6878944 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ17029-cds]; exon [dvir_GLEANR_17533:1]; intron [Dvir\GJ17029-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
(CCCA)nSimple_repeatSimple_repeat+

Sense Strand Reads

-#################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AATGCGGCGCAAACAGCAGCAGCGGGAGCAGCAGCAACAGCAGCAGCGGCGTTTGCCGGCAGGAAATGGAGGCAGCTGATAAAATGCAAGCAGGGTAAACACAGTTCAGTGAACCACCCAACCACCCAATCACCCAGCCAACCAGCCAGCCCAACTACCCACCCCACGCAACTGGCTAGCGGCAGGCGGAGGACAAGTGAATGCCAACGCAGGCTAACAATTTGCTTCAATTATAAAAAGCGTCGCGACAA
**************************************************...((((..((.....))..))))(((...........))).((((...(((......)))....))))..........((((....((..((.(((.(((...(((.(((...........))).))).))).))))).))....)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 M061
embryo
 M047
female body
 SRR060687
9_0-2h_embryos_total
 M028
head
 V116
male body		 SRR060681
Argx9_testes_total
 SRR060679
140x9_testes_total
 SRR060689
160x9_testes_total
 V047
embryo
...........................................................................................................AGTGAACCACCCGACCCC.............................................................................................................................. 18 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................AGGCAGCTGATAAAAAGGACGC................................................................................................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ACGCCAACCCAGGCTGACAAT.............................. 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0
..................................CAACAGCAGCAGCGGCGT....................................................................................................................................................................................................... 18 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0
......................................AGAAGCAGCGTCGTTTGCC.................................................................................................................................................................................................. 19 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0
...................................CACTGGAGCAGCGGCGTTTG.................................................................................................................................................................................................... 20 3 20 0.20 4 0 0 0 0 0 0 2 1 1 0
...............GCAGCAGCGGGAGCAGCAGCA....................................................................................................................................................................................................................... 21 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0
...........AACAGCAGCAGCGGGAGAAGCA.......................................................................................................................................................................................................................... 22 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0
........................................................CGTCATGCAATGGAGGCAGC............................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 1 0 0 0 0
..............................................CGGCGTTTCACGGCCGGAA.......................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 1 0 0 0 0 0 0
...............GCAGCAGCGGGAGCAGCA.......................................................................................................................................................................................................................... 18 0 15 0.07 1 0 0 1 0 0 0 0 0 0 0
........................GGAGCAGCAGCAACAGCAGC............................................................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...........................GCAGCAGCAACAGCAGCAGCG........................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
...............................CAGCAACAGCAGCAGCGGCGC....................................................................................................................................................................................................... 21 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.............................AGCAGCAACAGCAGCAGCGGC......................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1
............................CAGCAGCAACAGCAGCAGCGG.......................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
..............................GCAGCAACAGCAGCAGCGG.......................................................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TTACGCCGCGTTTGTCGTCGTCGCCCTCGTCGTCGTTGTCGTCGTCGCCGCAAACGGCCGTCCTTTACCTCCGTCGACTATTTTACGTTCGTCCCATTTGTGTCAAGTCACTTGGTGGGTTGGTGGGTTAGTGGGTCGGTTGGTCGGTCGGGTTGATGGGTGGGGTGCGTTGACCGATCGCCGTCCGCCTCCTGTTCACTTACGGTTGCGTCCGATTGTTAAACGAAGTTAATATTTTTCGCAGCGCTGTT
**************************************************...((((..((.....))..))))(((...........))).((((...(((......)))....))))..........((((....((..((.(((.(((...(((.(((...........))).))).))).))))).))....)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 V116
male body		 M047
female body
 SRR060662
9x160_0-2h_embryos_total
 M061
embryo
 V047
embryo
 SRR060661
160x9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 SRR060655
9x160_testes_total
 SRR060670
9_testes_total
 SRR060681
Argx9_testes_total
 M028
head
 SRR060663
160_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 M027
male body		 SRR060688
160_ovaries_total
................................................................................................................................................CGGTCGGTTTGAGGGGTGG........................................................................................ 19 2 4 12.00 48 0 31 3 6 3 1 2 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTGGTGGCTTAGTGCGACGGT............................................................................................................... 21 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GGTGGGTCGGTTTGAGGGGTG......................................................................................... 21 3 7 1.43 10 0 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TCGGTCGGTTTGAGGGGTGG........................................................................................ 20 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GTTGGTCGATCGGGGTGACGGG........................................................................................... 22 3 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GATCGGTCGGTTTGAGGGGTGG........................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GGTCGGTTAGTGGGTCGGT............................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGGGTCGGTTGGTGGCTCGGG................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GTCGGTTTGAGGGGTGGG....................................................................................... 18 2 12 1.00 12 0 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GGTGGGTCGGTTTGAGGGGTGG........................................................................................ 22 3 6 0.83 5 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GTCGGTTTGATGGGTGGA....................................................................................... 18 2 7 0.71 5 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GGGTCGGTTTGATGGGTGG........................................................................................ 19 2 9 0.67 6 0 2 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................CGGTCGGTTTGAGGGGTG......................................................................................... 18 2 18 0.56 10 0 7 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
.............................................................................................................................................GGTGGGTCGGCTTGAGGGGTGG........................................................................................ 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................CTTGGTGGGTGGGTGGGTT.......................................................................................................................... 19 1 6 0.50 3 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0
.............................................................................................................................................GGCCGGTCGGTTTGAGGGGTGG........................................................................................ 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTGGTGGATTAGTGCGACGGT............................................................................................................... 21 3 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GTCGGTTTGAGGGGTGGGCT..................................................................................... 20 3 10 0.40 4 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................TGGGTTGTTGGGTTAGGGGGT................................................................................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTGGTAGGTCGGGGTGACGGG........................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GTCGGTCGGCTGGATGGGCGGG....................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTGGTCGGTTAGTGGGACGGT............................................................................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTGGTCGATCGGGGTGATGGT........................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGGGTCGATTGGTGGGACGGG................................................................................................... 21 3 12 0.33 4 3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................GTCGGTTTGAGGGGTGGAGT..................................................................................... 20 3 12 0.33 4 0 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GTCGGTTTGATGGGTGGACTG.................................................................................... 21 3 10 0.30 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TTGGGTCGATGGGTGGGGTGCT.................................................................................. 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................AGCGGTCGGTTTGATGGGTGG........................................................................................ 21 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TGGTCGTTCGAGTTGATG............................................................................................. 18 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GCTGGTGGTTTAGCGGGTCGGT............................................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TCGGTTTGAGGGGTGGAGTG.................................................................................... 20 3 14 0.21 3 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTGGTCGATCGGGGTGACGGG........................................................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GTCGGTTTGAGGGGTGGCGTG.................................................................................... 21 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GCCGGTCGGTTTGAGGGGTGG........................................................................................ 21 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GTCGGTTTGAGGGGTGGAGTG.................................................................................... 21 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GTCGGTTTGAGGGGTGGGG...................................................................................... 19 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TGGTGGCTTGTTGGGTTAGA....................................................................................................................... 20 3 12 0.17 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GTGGGTCGATTGGTGCGTCGGG................................................................................................... 22 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CGGGTTGTTGGGTGCTGTGC................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TGGGTAGGTGGGGTAGTGGGTA.................................................................................................................. 22 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GGCCGGTCGGTTTGAGGGGTG......................................................................................... 21 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GTCGGTTTGAGGGGTGGGAT..................................................................................... 20 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GTCGGGTTGAGGGGTGGACTG.................................................................................... 21 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ATTTGGTGGGTTGGTGGGTT.......................................................................................................................... 20 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................TGGTGGCTTGTTGGGTTAG........................................................................................................................ 19 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................TGGTCGCTTAGTGGGACGGT............................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TCGGTTTGAGGGGTGGGCTG.................................................................................... 20 3 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................AGTGGGTCGGTGGGTGGGTC...................................................................................................... 20 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTGGTGGATTTGTGCGTCGGT............................................................................................................... 21 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TAGGTCGGTTGGTGGGGCGGG................................................................................................... 21 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TTGGTGGATTGGTGCGTAAGT....................................................................................................................... 21 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................CGGGCGGTTTGAGGGGTGG........................................................................................ 19 3 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CGGTTTGAGGGGTGGGCTG.................................................................................... 19 3 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TAGGTCGGTTTGAGGGGTGG........................................................................................ 20 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TGGTCGATTAGTGGGCCGGT............................................................................................................... 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................CGGTAGGTCGGACGGGTT................................................................................................. 18 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGGGTCGGTTGGGGCGTCGGG................................................................................................... 21 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGGGTCGATTGGTTGGGCGGG................................................................................................... 21 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GTCGGTTTGAGGGGTGGCGT..................................................................................... 20 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TGGTTGGTTAGTGCGACGGT............................................................................................................... 20 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................AGTCACTTGGTGAGTGGTTG.............................................................................................................................. 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................................GGTGGCTTGTTGGGTTAG........................................................................................................................ 18 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTGGTCGGTCGGGGTGACGGT........................................................................................... 21 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................AGTCACTTGGTGTGAGGGT............................................................................................................................... 19 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TGGTCGTTTGGTCGGTCGGG................................................................................................... 20 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GGTCGGTCGCGTCGAGGGGT.......................................................................................... 20 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGGGTCGGTTGGTGTGTCGGA................................................................................................... 21 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TCGGTTGGTTTGAGGGGTGG........................................................................................ 20 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CGGTTTGAGGGGTGGAGTG.................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GATGGGTGGTTTGCGTTG............................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
....................................................................................................................................GGGTCGGTTGGTGGGGCGGA................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GGCTCGGTTTGATGGGTGG........................................................................................ 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGGGTCGGTTGGTGGGAGGGG................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:6878744-6878994 + dvi_9158 AATGCGG--CGCAAACAG-CAGC---A--------------------------GCGGGAGCAGCAGC--AACA------GCAGCAGCGGCGTTTGCCGG-----CA----------------------------------------GGAAATGG----AGGCAGCTGATAAAATGCAAGCAGGGTAAACACAG------------------------------------------------------------------------------------------------------------------------------TTC------AGTGAACCACC-----------------------------------------------------------------------------------------------------------------CA---------------------------------------------------AC--CACCCA-ATCACCCAG------CCAACCAGCCAGCCCAA----CTACCCAC-C---CCACGCAACT-------------------------------------------------GGCTA---GCGGC-----------AGGCGGAGGACAAGTGAATGCCAACGCAGGC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------
droMoj3 scaffold_6328:2546265-2546466 + AATGCGG--CGCAAACAG-CGGC---A--------------------------GC---------A--GCAACAG------------------------------CA----------------------------------------GGAAATGG----AGGCAGCTGATATAATGCAAGCAGGGTAAACACAG------------------------------------------------------------------------------------------------------------------------------TTC------AG-----------------------------------------------------------------------------------------------------------------------------------------------------CCAACCAGCCCAG-------------AG--CACCCAGAGCACCCAGAGCACCCCGACCATCCGACCCAA-------------------------CT----------------------------------------------------------------------------GGCAGGACAAGTGAATGCCAGCGCGGGC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------
droGri2 scaffold_14853:1620498-1620746 - AGCAGCAGC----AGCAG-CAGC---T--------------------------GCAGG------A--GCAGCAGCAGCAGTAGCAGAAGC--------------------------------------------------------------------------------------------------------------------------G------------------------------AACAA--ACAGCA---------ATTGCAGCA---GCAGCAGCAACAACAGCAACATC-----------------------------------------------------------------------------------------------------T--------------------TGCAACAGTTGCAACATTGGTGCCCATC--GATTCACCGCTGCAAGCGAGCGTTGAGGCAAGCAGCTCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAGA-----AACGCT-GCTCAATGGTGATGCGG-GTGGCGAGGCAA--AGTTGCCAACAACAACAGTTGCTGCCGC--------------------------TGTTGTCAAGCAAAGCAA-----------------
droWil2 scf2_1100000003523:845-1086 + AATGCTG--CAGCATCAG-CAGC---A--------------------------ACAACAGCAGCAGC--AACA------ACAGCATCAGC--------------------------------------------------------------------------------------------------AAC------------AGCAACAGC------------AGC----------------AACAATGGCAGCA---------ACTGCAGCA---GCAACAA---------CAAAAACAGCAGCAACAACAACA----------------------------------------------------GCAGC-------------------------------------------------------AGCAACAACAGCAGCA----AC----------------------------------------AACAACAGCAGCAGCAA--CAACAGCA---------------------------------------------------------------T----------------------------------------------------------------------------------------CAGCA-----------------------GCAGCAACAA--CAGCATCAGCAACAGCAACAGCAGCAA--CAATGGCAGCAACTGCAGCAGCAACAAC------AAC-A--AC-----------------
dp5 XL_group1e:3880434-3880670 + GCAGCAG--CAACAGCAG-CAGC---A--------------------------ACAGCAGCA--------GCAA-----------------------------------------------------------------------------------------------------------------CAGC------------------------AGCAGCAACAGC----------------AACAATTGCAGCA---------GGTGCAGCA---GCAGCAG---------CAACAACAGCAGCAGCAGAAACAGATTGT------GGTCCAAT-CTCAATTG--CAGGTATCCACA----------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGGGATCCGATATTA-------------------------------TCTATGGCCGACCAAA---------GT-CGCAG-----------------------------------------------------CAG--CAGC---------TGGCGACAGGAGGATACCAGGTGC-AG-CAACAGTA-CACTG-----------------CT--------------------------------------------------CCC----------GGCTA-----------------
droPer2 scaffold_11:2385533-2385784 + AATGGGA--AGCAAACAG-GAGA---AGGGATGCTCGACTGCTCTCTGCTTGAGGCTTGAAG------------------------------------CTGGAAATGGAAATGG-AGATGGAG-ATG----G-------------AGTA-------GAAGGCATTCAACAGAATGCA-GGACAATAACAGCAGC------------A---GT----------------------------------GCCG---------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCACCACCACCACAACCACCAACAACGA-------------------------AT--------------------------------------GACGATGAGATGATGAGAATGAGG-----------AG----AAGCTGTGTGGATGCCAACTCA-AC-CAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------
droAna3 scaffold_13117:5424210-5424373 - AAAGGATAT----GGG---------------------------------------------------------------------------------TG-----GA----------------------------------------GTGGGTGG----AGGCATCTCTTCAAATGCAAGGACAATAATAACAGC------------A---ACAGCAAT-------------------------AAGGACCAAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGAC--------------------GAGCAAAGGAGGAGGA--GTGAGGAGTGAATGCCAACTCA-AC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------
droBip1 scf7180000395580:65008-65149 - AAAGGATAT----GGC---------------------------------------------------------------------------------TG-----GA----------------------------------------GTGGGTGGAAGGAGGCATCTCTTCAAATGCAAGGACAATAATAACAGC------------A---GCAGCAAC-------------------------AAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGA--GTGAGGAGTGAATGCCAACTCA-AC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------
droKik1 scf7180000302414:708510-708700 + AACAGCGAT----AACAG-CGAC-------------------------------------------------------------------------------------------------------------------------------------------------ACAGGTGCAGCAGCAGCAACAGCAGC------------A---GCGGCAGCAGTTACAGC----------------A---------------------------------GCAGGAG---------CA------------ATCACA-----GATA------AC-------------------------------GA-----GGAGG-AGCAGCAGCAGCTGAATAACTCTATCGTTGCAGCGGCTCTAACGCTGCAGC------------------------------------------------------------AGCAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------GG-CAGCAATC-TGCTCGCAAATACAAATACGCCGT--------------------------------------------------CGC----------C-CTC-----------------
droFic1 scf7180000453901:303504-303720 - AATGCGA--GGCCAGCGG-GGAT---G--------------------------GGGATGGGGTCGGG--GGA-----------------------------------------------------TGTGGTGTG--------GATGCGG-------GATGGCATCTCCCAGAATGCAAGGACAATAACAACAGC------------A-------CAACAGCCA-GGC----------------AAGGATAAAAAG-------------------GAA-------------------------GTGGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGG---------------------------------------------------------------------------------------------CGGAGGATGGCG---------ACGCCG--------------------------ACG-----------ACGACGACGACGAGTGAATGCCAACTCA-AC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------
droEle1 scf7180000491023:1063988-1064229 - AATATCATC----ATCAT-CATCAGCA--------------------------GCAGC-----------AGCAGCAGCAGCAGCAGCAGC--------------------------------------------------------------------------------------------------AAT------------GCCTGCAGC------------AGCACA------------CAACACTAC---------------------------------------------------CAGCAACGCATACGAAATGT------TGTACTCC-CACAACCA--AAAACACCCACACCCACACCCGCTAC---------------------------------------------------------------------------------------------------------ACCAAGCAGCCCAGCAGCAGCAGCTGCAG--CAGCAGCA-------------------------------------------------------------------------------------------------------------------GCAGC-----------AGCAGCACCA-------CCACCACCACC-AC-C-ACCATC-CGCAG-CA---------------C--------------------------------------------------CAT----------GAGCAACAGCGTCTGCTGAAGA
droRho1 scf7180000779334:528153-528324 - AATGCGA--GGCCAGAAG-AAGG---A--------------------------TGGTTGGTG-------------------------------------------------------------------------------------------G----TGGCATCTCCCGGAATGCAAGGACAATAACAACAGT------------A-------------------C----------------AAGGATGAGAAGATGTGGGAA----------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------------GGGGAAGGGA--------------------------------------------------------------------------------------A-----------------------------------------------------AGG-----------GGGGCGACGACGAGTGAATGCCAACTCA-AC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------
droBia1 scf7180000302136:3222137-3222372 - A-TGCAG--CACCAGCAG-CAGC---A--------------------------GCAAC------A--GCAACAG-----------------------------------------------------------------------------------------------------------------CAGC---------------A---GCAGCAACAGGCG-GGC----------------AACAAACAAAAG-------------------CAG-------------------------GTGCAATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAACCGCAGCA---------GGAGCAACAATCAC-----AGCTGCAA---ATAAA-----------ACCCAAAGAGCCGGCCAACAGGAACAAA-GC-CAATAATA-CCCAG-CAGCTGCAACAA--AGCCCACAGCAACTGCAGCAACAGCCACCCAACGGAAGCATCAATA--------TGTTACCACAAAAAGTA----------------AA
droTak1 scf7180000415394:1279178-1279386 - AATGCGA--GGCCAGAAAGGAGG---A--------------------------TGGTGGA-----------------------------------------------------------------TGGT----T--------GATAGGA-------GATGGCATCTCCCAGAATGCAAGGACAATAACAACAGC-------------------------------------------------AAGGATGAAAATATGTGGGCGGGAGAGGACG---ACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACGACAACGAC-----GAGGAGGA---GGAGGAGGAGA---------TGAGGACGAGTGAATGCCAACTCA-AC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------
droEug1 scf7180000409076:148213-148449 + AATGCGA--GGCCAGAAAGGAGG---AT-----------------------GATGGTTGA-----------------------------------------------------------------AGGCTGAAAGGCTGGAGGATGGTG-------GATGCCATCTCCCAGAATGCAAGGACAATAACAACAACAACAACAGC---A---GCAGCAGCAGCCATGGC----------------AAAGATGAAAAGAAGTGGGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAGAGGGA------------------GACAC-----ACTGACGA---AGAGA-----------AGGAGGACGACGAGTGAATGCCAACTCA-AC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------
dm3 chr3R:14879537-14879777 + ATTGCAA--CTACAGCAG-CAGC---A--------------------------CCAACAGCAGCAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCGGCACGATCGCGGGGTTAAAAGGTTGACACAAAGTA----------------------------------------------------AACAAAATTCGCTTTTA--------GGCAAACAGTAAATAACCCAAGACCAGGCCCAATGCC-----CAA---------CTTCCAAATGAGAC-----------------------------------------------------------------------------GGTGGCACTGGAGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------CGCAGCCGGGGGCGTGGCAATGGGCGT-TATAAATG-GTCCT-AAACGCTGCCAA--CTGC--------------------------------------------------AAT----------TACCA-----------------
droSim2 x:3865240-3865473 + AATGCCA--GGCCAAGAAGGAGG---ACGG--------------------AGATGCTTGA-----------------------------------------------------------------TGGTGGATA--------GATAGAG-------GATGCCATCTCCCAGTATGCAAGGACAATAACAATAAC------------A---ACAGCAGCAGCCACGGC----------------AAGGATGGGGGGCTGTGGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTAAGTACGAGGACGAGGACGAGGAC-----GAGGAGGA---GGAGG-----------AGGAGGACGACGAGTGAATGCCAACTCA-AC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------
droSec2 scaffold_4:2566536-2566752 - AATGCCA--GGCCAAGAAGGAGG---ACGG--------------------AGATGCTTGA-----------------------------------------------------------------TGGTGGATA--------GATAGAG-------GATGCCATCTCCCAGTATGCAAGGACAATAACAATAAC------------A---ACAGCAGCAGCCACGGC----------------AAGCATGGGGGGCTGTGGGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGGTGGTA------------------AG-----------TACGA---GGAGG-----------AGGAGGACGACGAGTGAATGCCAACTCA-AC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------
droYak3 3R:20852335-20852602 - TGCAGCAGC----AACAA-CAGC---A--------------------------GCAAC------A--GCAACAGCATCAGCAACATCTGC--------------------------------------------------------------------------------ATCTGCAGCAGCAGCAGCAGCAGC------------A----------------------------------------------------------------------------G---------CAGCATCAGCAGCTG--------------------------------------------------------------------------------------------------------CCAGCGCCGCAGCAACAGTTGCGTCATCAGCA----ACGGCA---------------------------------------------------AC--TGCCCA-CGCAGCCAG------CCTACCAGCAACCGCAATCGATTGCCCAC-AATGCTTTTCCACTGCGCAG-----------------------------------------------------CAG--CAGC--------------------------------------------------------AGCAACAA--TTATGGCCATGTTGCTAGTAGCGCCTA--CGCTGGAAGTAGCGGCAGTCACAACAGC----------AACAA-----------------
droEre2 scaffold_4690:1540587-1540808 + AATGCGA--GGCCAACAAGGAGG---ATGA--------------------TGATGGTTGATG------------------------------------GTGGG-----TGATGGTGGATGGTGGCTG----GTG--------GATAAAG-------GATGCCATCTCCTAGTATGCAAGGACAATAACAACAGC------------A------------GCCACGGC----------------AACGATGAAAGGCTGTCGGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGGTGGTA-----------------------------------A---GGAGG-----------AGGAGCACGACGAGTGAATGCCAACTCA-AC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AATGCGG--CGCAAACAG-CAGC---A--------------------------GCGGGAGCAGCAGC--AACA------GCAGCAGCGGCGTTTGCCGG-----CA----------------------------------------GGAAATGG----AGGCAGCTGATAAAATGCAAGCAGGGTAAACACAG------------------------------------------------------------------------------------------------------------------------------TTC------AGTGAACCACC-----------------------------------------------------------------------------------------------------------------CA---------------------------------------------------AC--CACCCA-ATCACCCAG------CCAACCAGCCAGCCCAA----CTACCCAC-C---CCACGCAACT-------------------------------------------------GGCTA---GCGGC-----------AGGCGGAGGACAAGTGAATGCCAACGCAGGC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................C--AACA------GCAGCAGCGGCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.331001000000000000000000000000000000000000000000000000000000000000
.................G-CAGC---A--------------------------GCGGGAGCAGCAGC--A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.201000000000000000000000000000000000000010000000000000000000000000
.................G-CAGC---A--------------------------GCGGGAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18150.071001000000000000000000000000000000000000000000000000000000000000
........................................................GGAGCAGCAGC--AACA------GCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000100000000000000000000000000000000000000000000000000000000000
...........................................................GCAGCAGC--AACA------GCAGCAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................CAGC--AACA------GCAGCAGCGGCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................AGCAGC--AACA------GCAGCAGCGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000001000
............................................................CAGCAGC--AACA------GCAGCAGCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000010000000000000000000000000000000
..............................................................GCAGC--AACA------GCAGCAGCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000001000000000000000000000000000000000
droMoj3
AATGCGG--CGCAAACAG-CGGC---A--------------------------GC---------A--GCAACAG------------------------------CA----------------------------------------GGAAATGG----AGGCAGCTGATATAATGCAAGCAGGGTAAACACAG------------------------------------------------------------------------------------------------------------------------------TTC------AG-----------------------------------------------------------------------------------------------------------------------------------------------------CCAACCAGCCCAG-------------AG--CACCCAGAGCACCCAGAGCACCCCGACCATCCGACCCAA-------------------------CT----------------------------------------------------------------------------GGCAGGACAAGTGAATGCCAGCGCGGGC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AGCAGCAGC----AGCAG-CAGC---T--------------------------GCAGG------A--GCAGCAGCAGCAGTAGCAGAAGC--------------------------------------------------------------------------------------------------------------------------G------------------------------AACAA--ACAGCA---------ATTGCAGCA---GCAGCAGCAACAACAGCAACATC-----------------------------------------------------------------------------------------------------T--------------------TGCAACAGTTGCAACATTGGTGCCCATC--GATTCACCGCTGCAAGCGAGCGTTGAGGCAAGCAGCTCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAGA-----AACGCT-GCTCAATGGTGATGCGG-GTGGCGAGGCAA--AGTTGCCAACAACAACAGTTGCTGCCGC--------------------------TGTTGTCAAGCAAAGCAA-----------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAGCGAGCGTTGAGG..............................................................................................................................................................................................................................................................................................................................2011.00101
.....................................................GCAGG------A--GCAGCAGCAGCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.14101
droWil2
AATGCTG--CAGCATCAG-CAGC---A--------------------------ACAACAGCAGCAGC--AACA------ACAGCATCAGC--------------------------------------------------------------------------------------------------AAC------------AGCAACAGC------------AGC----------------AACAATGGCAGCA---------ACTGCAGCA---GCAACAA---------CAAAAACAGCAGCAACAACAACA----------------------------------------------------GCAGC-------------------------------------------------------AGCAACAACAGCAGCA----AC----------------------------------------AACAACAGCAGCAGCAA--CAACAGCA---------------------------------------------------------------T----------------------------------------------------------------------------------------CAGCA-----------------------GCAGCAACAA--CAGCATCAGCAACAGCAACAGCAGCAA--CAATGGCAGCAACTGCAGCAGCAACAAC------AAC-A--AC-----------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--CAACAGCA---------------------------------------------------------------T----------------------------------------------------------------------------------------CAGCA-----------------------GCAGC................................................................................................2150.40200020
..........................................................................................................................................................................................................................................................................................AA---------CAAAAACAGCAGCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18110.27300030
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAGCAA--CA...............................................................................................................................................................................................................................................................................................18200.20400040
......................C---A--------------------------ACAACAGCAGCAGC--AACA------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.20400040
..........AGCATCAG-CAGC---A--------------------------ACAACAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.20100010
.....................................................................................TCAGC--------------------------------------------------------------------------------------------------AAC------------AGCAACAGC------------AGC----------------AACAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2660.17101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCAACAGCAACAGCAGCAA--CAAT........................................................2660.17101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--CAACAGCA---------------------------------------------------------------T----------------------------------------------------------------------------------------CAGCA-----------------------GCAGC................................................................................................2060.17100010
............CATCAG-CAGC---A--------------------------ACAACAGCAGCAGC--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2560.17100010
........................................................ACAGCAGCAGC--AACA------ACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.15300030
.........................................................................................................................................................................................................................................................................................CAA---------CAAAAACAGCAGCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.14101000
..........................................................................................................................................................................................................................................................................................AA---------CAAAAACAGCAGCAACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.14100100
.........................................................................................................................................................................................................................................................................................CAA---------CAAAAACAGCAGCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.13101000
..........................................................................................................................................................................................................................................................................................AA---------CAAAAACAGCAGCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.11100010
.............ATCAG-CAGC---A--------------------------ACAACAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2290.11100010
............................................................................................................................................................................................AAC------------AGCAACAGC------------AGC----------------AACAATGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10202000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CA----AC----------------------------------------AACAACAGCAGCAGCAA--C................................................................................................................................................................................................................................................................................................22200.10200020
.....................................................................................TCAGC--------------------------------------------------------------------------------------------------AAC------------AGCAACAGC------------AGC----------------AACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24100.10100010
............................................................................................................................................................................................AAC------------AGCAACAGC------------AGC----------------AACAATGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10202000
...................CAGC---A--------------------------ACAACAGCAGCAGC--A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200011
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAGCAA--CAATGGC.....................................................24200.10202000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAGCAA--CAATGG......................................................23200.10202000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCAACAGCAACAGCAGCAA--CA..........................................................24100.10100010
.................................................................................................................................................................................................................................................................................................................CAACAACAACA----------------------------------------------------GCAGC-------------------------------------------------------AGCAAC............................................................................................................................................................................................................................................................................................................................................................................22200.10200020
.................................................................................................................................................................................................................................................................................................................CAACAACAACA----------------------------------------------------GCAGC-------------------------------------------------------AGCA..............................................................................................................................................................................................................................................................................................................................................................................20200.10200020
.................................................................................................................................................................................................................................................................................................................CAACAACAACA----------------------------------------------------GCAGC-------------------------------------------------------AGCAACA...........................................................................................................................................................................................................................................................................................................................................................................23200.10200011
.......................................................................CA------ACAGCATCAGC--------------------------------------------------------------------------------------------------AAC------------AGCAACAGC------------AG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27120.08100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA--CAGCATCAGCAACAGCAACAGCAG.................................................................27120.08100010
......................................................CAACAGCAGCAGC--AACA------ACAGCATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27120.08100010
..................................................................C--AACA------ACAGCATCAGC--------------------------------------------------------------------------------------------------AAC------------AGCAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27120.08101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAA--CAGCATCAGCAACAGCAACAG....................................................................27120.08101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAA--CAACAGCA---------------------------------------------------------------T----------------------------------------------------------------------------------------CAG..............................................................................................................................27120.08100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAA--CAGCATCAGCAACAGC.........................................................................22140.07100010
..................................................................C--AACA------ACAGCATCAGC--------------------------------------------------------------------------------------------------AAC------------AGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22140.07100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--CAACAGCA---------------------------------------------------------------T----------------------------------------------------------------------------------------CAGCA-----------------------GC...................................................................................................18160.06100010
.......................................................................CA------ACAGCATCAGC--------------------------------------------------------------------------------------------------AAC------------AGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19170.06100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAGCAACAGCAACAGCAG.................................................................23170.06101000
.................................................................................AGCATCAGC--------------------------------------------------------------------------------------------------AAC------------AGCAACAGC------------AG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23170.06101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA--CAGCATCAGCAACAGC.........................................................................19170.06100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAACAGCAACAGCAGCAA--C...........................................................24190.05101000
....................................................................................ATCAGC--------------------------------------------------------------------------------------------------AAC------------AGCAACAGC------------AGC----------------AAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24190.05101000
...................CAGC---A--------------------------ACAACAGCAGCAGC--AACA------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................GC-------------------------------------------------------AGCAACAACAGCAGCA----AC----------------------------------------....................................................................................................................................................................................................................................................................................................................20200.05100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAA--CAATGG......................................................20200.05101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCA----AC----------------------------------------AACAACAGC...........................................................................................................................................................................................................................................................................................................21200.05100010
......................C---A--------------------------ACAACAGCAGCAGC--AACA------ACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------T----------------------------------------------------------------------------------------CAGCA-----------------------GCAGCAACAA--CA.......................................................................................19200.05100010
...............................................................................................................................................................................................................................................................................................................AGCAACAACAACA----------------------------------------------------GCAGC-------------------------------------------------------AGCAACA...........................................................................................................................................................................................................................................................................................................................................................................25200.05100010
...........................................................................................................................................................................................................................................................................................................................A----------------------------------------------------GCAGC-------------------------------------------------------AGCAACAACAGC......................................................................................................................................................................................................................................................................................................................................................................18200.05100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA----AC----------------------------------------AACAACAGCAGCAGCAA--CA...............................................................................................................................................................................................................................................................................................24200.05100010
........................................................................................................................................................................................................................................................................................................................AACA----------------------------------------------------GCAGC-------------------------------------------------------AGCAACAACAGCA.....................................................................................................................................................................................................................................................................................................................................................................22200.05101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAGCAA--CAATGGC.....................................................25200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAACAGCAACAGCAGC................................................................21200.05101000
....................................................................................ATCAGC--------------------------------------------------------------------------------------------------AAC------------AGCAACAGC------------AGC----------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA----AC----------------------------------------AACAACAGCAGCAGCA....................................................................................................................................................................................................................................................................................................24200.05100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCAACAGCAACAGCA..................................................................20200.05100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCA----AC----------------------------------------AACAACAGCAG.........................................................................................................................................................................................................................................................................................................22200.05101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAA--CAACAGCA---------------------------------------------------------------..........................................................................................................................................................................................................................22200.05101000
...................................................................................CATCAGC--------------------------------------------------------------------------------------------------AAC------------AGCAACAGC------------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
...........................................................................................................................................................................................................AGCAACAGC------------AGC----------------AACAATGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000
.............................................................................................................................................................................................................................................................................................................GCAGCAACAACAACA----------------------------------------------------GCAGC-------------------------------------------------------AGCA..............................................................................................................................................................................................................................................................................................................................................................................24200.05100010
..........................A--------------------------ACAACAGCAGCAGC--AACA------ACAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
.........................................................................................C--------------------------------------------------------------------------------------------------AAC------------AGCAACAGC------------AGC----------------AACAATGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAGCAA--CAA..............................................................................................................................................................................................................................................................................................19200.05100010
..........................................................................................................................................................................................................................................................................................................................CA----------------------------------------------------GCAGC-------------------------------------------------------AGCAACAACAGCAGCA----..............................................................................................................................................................................................................................................................................................................................................................23200.05101000
.................G-CAGC---A--------------------------ACAACAGCAGCAGC--A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
................................................................................................................................................................................................................................................................................................................GCAACAACAACA----------------------------------------------------GCAGC-------------------------------------------------------AGCAACA...........................................................................................................................................................................................................................................................................................................................................................................24200.05100010
.....................................................................................................................................................................................................................................................................................................................AACAACA----------------------------------------------------GCAGC-------------------------------------------------------AGCAACAACAGCA.....................................................................................................................................................................................................................................................................................................................................................................25200.05100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA----AC----------------------------------------AACAACAGCAGCAGCAA--.................................................................................................................................................................................................................................................................................................26200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA----AC----------------------------------------AACAACAGCAGCAGCA....................................................................................................................................................................................................................................................................................................21200.05101000
..................................................................................................................................................................................................................................................................................................................AACAACAACA----------------------------------------------------GCAGC-------------------------------------------------------AGCAA.............................................................................................................................................................................................................................................................................................................................................................................20200.05100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCA---------------------------------------------------------------T----------------------------------------------------------------------------------------CAGCA-----------------------GCAGCA...............................................................................................18200.05100010
....................AGC---A--------------------------ACAACAGCAGCAGC--AACA------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
......................................................................................................................................................................................................................................................................................................................ACAACA----------------------------------------------------GCAGC-------------------------------------------------------AGCAACAACA........................................................................................................................................................................................................................................................................................................................................................................21200.05101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA---------------------------------------------------------------T----------------------------------------------------------------------------------------CAGCA-----------------------GCAGC................................................................................................18200.05100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAGCAA--CAACA............................................................................................................................................................................................................................................................................................21200.05101000
....................................................................................................................................................................................................................................................................................................................CAACAACA----------------------------------------------------GCAGC-------------------------------------------------------AGCAACAACAG.......................................................................................................................................................................................................................................................................................................................................................................24200.05101000
.........................................................................................................................................................................................................................................................................................................................ACA----------------------------------------------------GCAGC-------------------------------------------------------AGCAACAACAGCAGC...................................................................................................................................................................................................................................................................................................................................................................23200.05100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CA----AC----------------------------------------AACAACAGCAGCAGCAA--CA...............................................................................................................................................................................................................................................................................................23200.05100010
dp5
GCAGCAG--CAACAGCAG-CAGC---A--------------------------ACAGCAGCA--------GCAA-----------------------------------------------------------------------------------------------------------------CAGC------------------------AGCAGCAACAGC----------------AACAATTGCAGCA---------GGTGCAGCA---GCAGCAG---------CAACAACAGCAGCAGCAGAAACAGATTGT------GGTCCAAT-CTCAATTG--CAGGTATCCACA----------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGGGATCCGATATTA-------------------------------TCTATGGCCGACCAAA---------GT-CGCAG-----------------------------------------------------CAG--CAGC---------TGGCGACAGGAGGATACCAGGTGC-AG-CAACAGTA-CACTG-----------------CT--------------------------------------------------CCC----------GGCTA-----------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................CAG---------CAACAACAGCAGCAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020200000000
..........................................................................................................................................................................................................................................................................GTGCAGCA---GCAGCAG---------CAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19120.0810100000000
...........................................................GCA--------GCAA-----------------------------------------------------------------------------------------------------------------CAGC------------------------AGCAGCAACAGC----------------AAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26170.0610001000000
........................................................................AA-----------------------------------------------------------------------------------------------------------------CAGC------------------------AGCAGCAACAGC----------------AAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000010
.................G-CAGC---A--------------------------ACAGCAGCA--------GCAA-----------------------------------------------------------------------------------------------------------------CAGC------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510010000000
...................CAGC---A--------------------------ACAGCAGCA--------GCAA-----------------------------------------------------------------------------------------------------------------CAGC------------------------AGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510001000000
....................AGC---A--------------------------ACAGCAGCA--------GCAA-----------------------------------------------------------------------------------------------------------------CAGC------------------------AGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000001
...........ACAGCAG-CAGC---A--------------------------ACAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510001000000
....CAG--CAACAGCAG-CAGC---A--------------------------ACAGCAGCA--------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510001000000
..............................................................................................................................................................................................................................................................................AGCA---GCAGCAG---------CAACAACAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
.................................................................................................................................................................................................................................................................................A---GCAGCAG---------CAACAACAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
...............................................................................................................................................................................................................................................................................GCA---GCAGCAG---------CAACAACAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
.....AG--CAACAGCAG-CAGC---A--------------------------ACAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000001
....................AGC---A--------------------------ACAGCAGCA--------GCAA-----------------------------------------------------------------------------------------------------------------CAGC------------------------AGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000000001
.............................................................................................................................................................................................................................................................................CAGCA---GCAGCAG---------CAACAACAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
................................................................................................................................................................................................................................................................................CA---GCAGCAG---------CAACAACAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510010000000
.............................................................................................................................................................................................................................................................................CAGCA---GCAGCAG---------CAACAACAGCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.0510001000000
..........AACAGCAG-CAGC---A--------------------------ACAGCAGCA--------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
...........................................................GCA--------GCAA-----------------------------------------------------------------------------------------------------------------CAGC------------------------AGCAGCAACAGC----------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510010000000
...GCAG--CAACAGCAG-CAGC---A--------------------------ACAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000100000
..............................................................................................................................................................................................................................................................................AGCA---GCAGCAG---------CAACAACAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
..........................A--------------------------ACAGCAGCA--------GCAA-----------------------------------------------------------------------------------------------------------------CAGC------------------------AGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
droPer2
AATGGGA--AGCAAACAG-GAGA---AGGGATGCTCGACTGCTCTCTGCTTGAGGCTTGAAG------------------------------------CTGGAAATGGAAATGG-AGATGGAG-ATG----G-------------AGTA-------GAAGGCATTCAACAGAATGCA-GGACAATAACAGCAGC------------A---GT----------------------------------GCCG---------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCACCACCACCACAACCACCAACAACGA-------------------------AT--------------------------------------GACGATGAGATGATGAGAATGAGG-----------AG----AAGCTGTGTGGATGCCAACTCA-AC-CAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................AAATGG-AGATGGAG-ATG----G-------------AG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2090.111000001
droAna3
AAAGGATAT----GGG---------------------------------------------------------------------------------TG-----GA----------------------------------------GTGGGTGG----AGGCATCTCTTCAAATGCAAGGACAATAATAACAGC------------A---ACAGCAAT-------------------------AAGGACCAAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGAC--------------------GAGCAAAGGAGGAGGA--GTGAGGAGTGAATGCCAACTCA-AC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AAAGGATAT----GGC---------------------------------------------------------------------------------TG-----GA----------------------------------------GTGGGTGGAAGGAGGCATCTCTTCAAATGCAAGGACAATAATAACAGC------------A---GCAGCAAC-------------------------AAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGA--GTGAGGAGTGAATGCCAACTCA-AC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------SizeHit CountTotal NormTotal
No Reads
droKik1
AACAGCGAT----AACAG-CGAC-------------------------------------------------------------------------------------------------------------------------------------------------ACAGGTGCAGCAGCAGCAACAGCAGC------------A---GCGGCAGCAGTTACAGC----------------A---------------------------------GCAGGAG---------CA------------ATCACA-----GATA------AC-------------------------------GA-----GGAGG-AGCAGCAGCAGCTGAATAACTCTATCGTTGCAGCGGCTCTAACGCTGCAGC------------------------------------------------------------AGCAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------GG-CAGCAATC-TGCTCGCAAATACAAATACGCCGT--------------------------------------------------CGC----------C-CTC-----------------SizeHit CountTotal NormTotal
No Reads
droFic1
AATGCGA--GGCCAGCGG-GGAT---G--------------------------GGGATGGGGTCGGG--GGA-----------------------------------------------------TGTGGTGTG--------GATGCGG-------GATGGCATCTCCCAGAATGCAAGGACAATAACAACAGC------------A-------CAACAGCCA-GGC----------------AAGGATAAAAAG-------------------GAA-------------------------GTGGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGG---------------------------------------------------------------------------------------------CGGAGGATGGCG---------ACGCCG--------------------------ACG-----------ACGACGACGACGAGTGAATGCCAACTCA-AC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------SizeHit CountTotal NormTotal
No Reads
droEle1
AATATCATC----ATCAT-CATCAGCA--------------------------GCAGC-----------AGCAGCAGCAGCAGCAGCAGC--------------------------------------------------------------------------------------------------AAT------------GCCTGCAGC------------AGCACA------------CAACACTAC---------------------------------------------------CAGCAACGCATACGAAATGT------TGTACTCC-CACAACCA--AAAACACCCACACCCACACCCGCTAC---------------------------------------------------------------------------------------------------------ACCAAGCAGCCCAGCAGCAGCAGCTGCAG--CAGCAGCA-------------------------------------------------------------------------------------------------------------------GCAGC-----------AGCAGCACCA-------CCACCACCACC-AC-C-ACCATC-CGCAG-CA---------------C--------------------------------------------------CAT----------GAGCAACAGCGTCTGCTGAAGASizeHit CountTotal NormTotal
No Reads
droRho1
AATGCGA--GGCCAGAAG-AAGG---A--------------------------TGGTTGGTG-------------------------------------------------------------------------------------------G----TGGCATCTCCCGGAATGCAAGGACAATAACAACAGT------------A-------------------C----------------AAGGATGAGAAGATGTGGGAA----------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------------GGGGAAGGGA--------------------------------------------------------------------------------------A-----------------------------------------------------AGG-----------GGGGCGACGACGAGTGAATGCCAACTCA-AC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------SizeHit CountTotal NormTotal
No Reads
droBia1
A-TGCAG--CACCAGCAG-CAGC---A--------------------------GCAAC------A--GCAACAG-----------------------------------------------------------------------------------------------------------------CAGC---------------A---GCAGCAACAGGCG-GGC----------------AACAAACAAAAG-------------------CAG-------------------------GTGCAATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAACCGCAGCA---------GGAGCAACAATCAC-----AGCTGCAA---ATAAA-----------ACCCAAAGAGCCGGCCAACAGGAACAAA-GC-CAATAATA-CCCAG-CAGCTGCAACAA--AGCCCACAGCAACTGCAGCAACAGCCACCCAACGGAAGCATCAATA--------TGTTACCACAAAAAGTA----------------AASizeHit CountTotal NormTotal
No Reads
droTak1
AATGCGA--GGCCAGAAAGGAGG---A--------------------------TGGTGGA-----------------------------------------------------------------TGGT----T--------GATAGGA-------GATGGCATCTCCCAGAATGCAAGGACAATAACAACAGC-------------------------------------------------AAGGATGAAAATATGTGGGCGGGAGAGGACG---ACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACGACAACGAC-----GAGGAGGA---GGAGGAGGAGA---------TGAGGACGAGTGAATGCCAACTCA-AC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------SizeHit CountTotal NormTotal
No Reads
droEug1
AATGCGA--GGCCAGAAAGGAGG---AT-----------------------GATGGTTGA-----------------------------------------------------------------AGGCTGAAAGGCTGGAGGATGGTG-------GATGCCATCTCCCAGAATGCAAGGACAATAACAACAACAACAACAGC---A---GCAGCAGCAGCCATGGC----------------AAAGATGAAAAGAAGTGGGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAGAGGGA------------------GACAC-----ACTGACGA---AGAGA-----------AGGAGGACGACGAGTGAATGCCAACTCA-AC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------SizeHit CountTotal NormTotal
No Reads
dm3
ATTGCAA--CTACAGCAG-CAGC---A--------------------------CCAACAGCAGCAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCGGCACGATCGCGGGGTTAAAAGGTTGACACAAAGTA----------------------------------------------------AACAAAATTCGCTTTTA--------GGCAAACAGTAAATAACCCAAGACCAGGCCCAATGCC-----CAA---------CTTCCAAATGAGAC-----------------------------------------------------------------------------GGTGGCACTGGAGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------CGCAGCCGGGGGCGTGGCAATGGGCGT-TATAAATG-GTCCT-AAACGCTGCCAA--CTGC--------------------------------------------------AAT----------TACCA-----------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................CCCAATGCC-----CAA---------CTTCCAAATGAG...........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................AGCAGCGGCACGATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AC-----------------------------------------------------------------------------GGTGGCACTGGAGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------CG................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................CCAACAGCAGCAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2730.3310000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................CAACAGCAGCAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
........................................................................A------AC--------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCGGCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1740.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................GCAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................ACAGCAGCAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CAG-CAGC---A--------------------------CCAACAGCAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................ACAGCAGCAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000020000000000000000000000000000
.......................................................AACAGCAGCAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000002000
..........................................................AGCAGCAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.....................GC---A--------------------------CCAACAGCAGCAGC--AACA------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GCAG-CAGC---A--------------------------CCAACAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............CAGCAG-CAGC---A--------------------------CCAACAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2280.1310000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AGC---A--------------------------CCAACAGCAGCAGC--A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................AGCAGCAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
.......................................................AACAGCAGCAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
......................................................CAACAGCAGCAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
........................................................ACAGCAGCAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..............................................................GCAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CAG-CAGC---A--------------------------CCAACAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................AGCAGCAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AGCAG-CAGC---A--------------------------CCAACAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
......................C---A--------------------------CCAACAGCAGCAGC--AACA------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................C---A--------------------------CCAACAGCAGCAGC--AAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAGC---A--------------------------CCAACAGCAGCAGC--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................AACAGCAGCAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................A--------------------------CCAACAGCAGCAGC--AACA------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................AACAGCAGCAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................ACAGCAGCAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................CAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AGCAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AGC---A--------------------------CCAACAGCAGCAGC--C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
............................................................CAGCAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AGCAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................CAGCAGCAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................CAACAGCAGCAGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................AGC--AACA------AC--------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
droSim2
AATGCCA--GGCCAAGAAGGAGG---ACGG--------------------AGATGCTTGA-----------------------------------------------------------------TGGTGGATA--------GATAGAG-------GATGCCATCTCCCAGTATGCAAGGACAATAACAATAAC------------A---ACAGCAGCAGCCACGGC----------------AAGGATGGGGGGCTGTGGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTAAGTACGAGGACGAGGACGAGGAC-----GAGGAGGA---GGAGG-----------AGGAGGACGACGAGTGAATGCCAACTCA-AC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----GAGGAGGA---GGAGG-----------AGGAGGACGA............................................................................................................................................2430.67200000000000002000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC-----GAGGAGGA---GGAGG-----------AGGAGGAC..............................................................................................................................................2420.50110000000000000000
....CCA--GGCCAAGAAGGAGG---ACTT--------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000000000001000
....................................................................................................................................................................................................................................................................GGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTAAGTACGAG.....................................................................................................................................................................................................1530.33100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGA---GGAGG-----------AGGAGGAC..............................................................................................................................................2180.25200200000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGA---GGAGG-----------AGGAGGAC..............................................................................................................................................20120.17200200000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-----GAGGAGGA---GGAGG-----------AGGAGG................................................................................................................................................2170.14100000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGACGAGGACGAGGAC-----.................................................................................................................................................................................1990.11101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGA---GGAGG-----------AGGAGGACG.............................................................................................................................................2190.11100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----GAGGAGGA---GGAGG-----------AGGA..................................................................................................................................................18200.10200000000000200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----GAGGAGGA---GGAGG-----------AGGAGG................................................................................................................................................20170.06100000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGA---GGAGG-----------AGGAG.................................................................................................................................................18200.05100000000001000000
droSec2
AATGCCA--GGCCAAGAAGGAGG---ACGG--------------------AGATGCTTGA-----------------------------------------------------------------TGGTGGATA--------GATAGAG-------GATGCCATCTCCCAGTATGCAAGGACAATAACAATAAC------------A---ACAGCAGCAGCCACGGC----------------AAGCATGGGGGGCTGTGGGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGGTGGTA------------------AG-----------TACGA---GGAGG-----------AGGAGGACGACGAGTGAATGCCAACTCA-AC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TGCAGCAGC----AACAA-CAGC---A--------------------------GCAAC------A--GCAACAGCATCAGCAACATCTGC--------------------------------------------------------------------------------ATCTGCAGCAGCAGCAGCAGCAGC------------A----------------------------------------------------------------------------G---------CAGCATCAGCAGCTG--------------------------------------------------------------------------------------------------------CCAGCGCCGCAGCAACAGTTGCGTCATCAGCA----ACGGCA---------------------------------------------------AC--TGCCCA-CGCAGCCAG------CCTACCAGCAACCGCAATCGATTGCCCAC-AATGCTTTTCCACTGCGCAG-----------------------------------------------------CAG--CAGC--------------------------------------------------------AGCAACAA--TTATGGCCATGTTGCTAGTAGCGCCTA--CGCTGGAAGTAGCGGCAGTCACAACAGC----------AACAA-----------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGTAGCGCCTA--CGCTGGAAGT..................................................2311.00101000000000
...................................................................................................................................................................................................................................................................................................................G--------------------------------------------------------------------------------------------------------CCAGCGCCGCAGCAACAGTTGCGT..........................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TTATGGCCATGTTGCTAGTAGCGC.................................................................2511.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCCTA--CGCTGGAAGTAGCGGCA...........................................2411.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCATCAGCA----ACGGCA---------------------------------------------------AC--TGCC.............................................................................................................................................................................................................................................................................................2311.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCCTA--CGCTGGAAGTAGCGGCA...........................................2511.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGTAGCGCCTA--CGCTGGAA....................................................2211.00100000010000
.......................................................................................................................................................................................................................................................................................................GCATCAGCAGCTG--------------------------------------------------------------------------------------------------------CCAGCGCCGC........................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTA--CGCTGGAAGTAGCGGC............................................2111.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGATTGCCCAC-AATGCTTTTCCACTG..............................................................................................................................................................................................................................2911.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCA---------------------------------------------------AC--TGCCCA-CGCAGCCAG------C..........................................................................................................................................................................................................................................................................2411.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA--TTATGGCCATGTTGCTAGTA.....................................................................2511.00100100000000
TGCAGCAGC----AACAA-CAGC---A--------------------------GC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.08101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG-----------------------------------------------------CAG--CAGC--------------------------------------------------------AGCAACAA--.........................................................................................18200.05101000000000
TGCAGCAGC----AACAA-CAGC---A--------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
droEre2
AATGCGA--GGCCAACAAGGAGG---ATGA--------------------TGATGGTTGATG------------------------------------GTGGG-----TGATGGTGGATGGTGGCTG----GTG--------GATAAAG-------GATGCCATCTCCTAGTATGCAAGGACAATAACAACAGC------------A------------GCCACGGC----------------AACGATGAAAGGCTGTCGGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGGTGGTA-----------------------------------A---GGAGG-----------AGGAGCACGACGAGTGAATGCCAACTCA-AC-TAACAATT-TGCTT-CAATTATAAAAA--GCGT--------------------------------------------------CGC----------GACAA-----------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 08:13 PM