ID:

dvi_9153

 Coordinate:

scaffold_12928:6839237-6839387 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-36.5 -36.4 -36.3

Flybase annnotation

CDS [Dvir\GJ16418-cds]; exon [dvir_GLEANR_16921:2]; intron [Dvir\GJ16418-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTTGTCATTACATTACAGCCTGCTGCCAAATGTGTGCGGCACAGAACTCCACGTTCGTAGCAACAATTGTCAGCTCGAACAACACGTTGCAGTCGGCAAATGAGACGCGGCTCAATGAAACGATTACAATCAATATTAGCGAAATAATTGCTGCTGCTGCTGCCGCTGTTGAGCCGACAACAGCAACATCAACGACAACAGAAGCAACATCAACAACTTTAGCAGCATCAACACTAAGGAGCACACCAGCA
**************************************************..(((((.(((.((....))..))))))))....((((((((.(((((..((((......)))).......(((....))).....((((((.....)))))).))))))))..(((((((......))))))).....))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060675
140x9_ovaries_total
 SRR060672
9x160_females_carcasses_total
...............................................TCCACGTTCGTAGCAACAATTGTC.................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0
.........................................................................................................................................................................................ACATCAACGACAACAGAAGCAACATCA....................................... 27 0 1 1.00 1 0 1 0
........................................................................................GCAGTCGGCAAATGAGACGCGGCT........................................................................................................................................... 24 0 1 1.00 1 1 0 0
...........................................................................................GTAGGCCACTGAGACGCGG............................................................................................................................................. 19 3 11 0.09 1 1 0 0
...............................................................................................................................................................................GACATCAGCAACCTCAAGGA........................................................ 20 3 16 0.06 1 0 0 1

Anti-sense strand reads

CAACAGTAATGTAATGTCGGACGACGGTTTACACACGCCGTGTCTTGAGGTGCAAGCATCGTTGTTAACAGTCGAGCTTGTTGTGCAACGTCAGCCGTTTACTCTGCGCCGAGTTACTTTGCTAATGTTAGTTATAATCGCTTTATTAACGACGACGACGACGGCGACAACTCGGCTGTTGTCGTTGTAGTTGCTGTTGTCTTCGTTGTAGTTGTTGAAATCGTCGTAGTTGTGATTCCTCGTGTGGTCGT
**************************************************..(((((.(((.((....))..))))))))....((((((((.(((((..((((......)))).......(((....))).....((((((.....)))))).))))))))..(((((((......))))))).....))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 SRR060677
Argx9_ovaries_total
 V053
head
 V116
male body		 M028
head
 SRR060666
160_males_carcasses_total
 M061
embryo
 M047
female body
 SRR060686
Argx9_0-2h_embryos_total
 SRR060657
140_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060688
160_ovaries_total
.....................................CCGTGTATTGAGATGCAAGC.................................................................................................................................................................................................. 20 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
..................................AGGCCGTGTATTGAGATGCAA.................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTCGTTGTAGTTGTTGAAATC............................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................CACGCCGGGTCTTGAGATTC...................................................................................................................................................................................................... 20 3 4 0.50 2 0 0 0 0 2 0 0 0 0 0 0 0
.........TGTTATGTCGGATGACGGTGT............................................................................................................................................................................................................................. 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTGAAAGCTTCGTAGTTGT.................. 19 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................AGGTGCAAGTTTCGTTGTTCA....................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................CACACGCCGGGTCTTGCAG......................................................................................................................................................................................................... 19 3 11 0.18 2 0 0 0 1 0 1 0 0 0 0 0 0
..................................ACGCCGTGACTGGAGGTGCG..................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CGTTGTAGTTGCTATTGGC.................................................. 19 2 12 0.17 2 0 0 0 0 2 0 0 0 0 0 0 0
...............................CGCACGCCGGGTCTTGCGG......................................................................................................................................................................................................... 19 3 16 0.13 2 0 0 0 0 0 0 2 0 0 0 0 0
.....................................CCGTGAATTGAGATGCAAG................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 1 0 0 0 0 0 1 0 0
......................................................................................................................................................................................CGTTGTAGTTGCTACTGGCT................................................. 20 3 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GAATCGTCGAAGTTGTGAGT.............. 20 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGGTGGAAGTTGTTGAAATC............................. 20 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ACTCGGCTGTAGTCCTTATA.............................................................. 20 3 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................TTTTGTCGTTGTAGTTGC......................................................... 18 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGTGGTTCCTGGGGTGGTCG. 20 3 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TTGTAGTTGCTAGTGTCT................................................. 18 2 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGTCGTTGTAGTTGCTCT...................................................... 18 1 15 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................TGGAAGTTGTTGAAATCG............................ 18 2 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................ACGACGACGACGACGGCGACAA................................................................................. 22 0 18 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0
................................GCACGCCGGGTCTTGAAG......................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................TTGTCGTGGTAGTGGCTGT...................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................GTTGTAGTTGCTATTGGC.................................................. 18 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................AGGCCGTGTATTGAGATGC...................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.........TGATATGTCGGACGACGGTAT............................................................................................................................................................................................................................. 21 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................ACGGCGACGACGGCGACAAAT............................................................................... 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:6839187-6839437 - dvi_9153 GTTGTCATTACA------T-TACAGC---CTGCTGCCAAATG----------------------------------------------------------TGT------GCG--------------------GCACAGAACTC---CACGTTCGTAGCAACAATTGTCAGCTCGAACAACACGTTGCAGTC--------------------------------------------GGCAAATGAGA-----------------------------------------C---GCGGCTCA---ATGAAACGATTACAATCAATATTAGCGAAATAATTGCTGCTG-CTGCTGCCGCTGT------------------------TGAGCCGAC---------------AACAGCAACATC---AACGA---------------------------------------------------------------CAAC---AGAAGCAAC-A-----T-------------CA---ACAACTTTAGCAG-CATCAACACTA---------------------------------------------AGGAGCACACCAGCA
droMoj3 scaffold_6328:2507321-2507570 - TTTGGCATT-----TGCATTTTCAGCCAGCTGCTGTCAGCTG----------------------------------------------------------TGT------GCG--------------------GCTCAGAACTC---GACGTTCGTGGCAACAATTGTCAGCTCGAACAACACGTTGCAGAC--------------------------------------------GCTGAACGAGA-----------------------------------------C---GCGGCTCA---ATGAAACGATAACAATCAATATAAGTGAGATTATTGCAGCTG-CGACGGGCGAC---GGGCCGACTGA---------------------------TA---GCACAACAGCAAC---------------------------------------------------------------------------GAC---GGACACGAC-G-----G-------------CA---ACGAC---AACAG-CAGCAACAATA---------------------------------------------ACAACCACACCTGAC
droGri2 scaffold_14853:3723431-3723663 + CAGC-------------------CGC---CTGCTGTCAGCTG----------------------------------------------------------TCT------ACG--------------------GCGCAGAACTCAGAGACATTCGTAGCAACAATTGTCAGCTCGAATAATGCGTTGCAATC--------------------------------------------TTTGAATGAGA-----------------------------------------C---GAGACTCA---ATGAGACAATAACAATCAATATTAGCGAGGTGATTGCTGCTG-CTGCTGCGGCAGAGAACAATACA------------------------------------ACAATAGCACCAACAAGCACAA---------------------------------------------------------------CAAC---AGAAGC-------------------------------------AACAG-CATCATCATCA---------------------------------------------AGCAGCACCACAGCA
droWil2 scf2_1100000004963:2253029-2253287 + GTTC-----------------CCAGCAGCCATTTGTCAACCA----------------------------------------------------------TGT------TCC--------------------GCTCAAAACTC---TACATTTGTGGCAACAATTGTCAGCTCGAACAATACGCTTCAGTC--------------------------------------------GGCGAATGGAG-----------------------------------------CGACGCGTGTAA---ATGAAACAATAACGATCAATATCAGTGAGATAATTGCGGCGG-CAGCAACAGAC---ACCGATACAGACACAACGACATCGGAAACTACATCATCCA---GCACC------------------------------------------------------------------------------------AC---AGACGCAAC-A-----A-------------CA---ACCAC---AGCAA-CACCAGCAGTC---------------------------------------------ACTAGCACGGCACCA
dp5 XL_group3a:2325920-2326196 + CCAC-----------------TAAGC------CTGCCAGCTA----------------------------------------------------------TGT------GCC--------------------GCCCAGAACTC---CACGTTCCTGGCCACCATTGTCAGCTCCAACAACACGCTGCAGAC--------------------------------------------GACGAACGGGA-----------------------------------------C---GCGCCACA---ACGAGACGATCACGATCAATATTAGCGAGGTGATTGCCGCCG-CTGAGGCGGAA---GGCGACACGGTGACCACCACACTAGACCCGGC---------------CA------------CGGCAA---------------------------------------------------------------CCAC---GGAGCCTGCTACCAGCACCGA-AACA----------------------------------------TCTGACACGTCATCAACAACAACACTTACATCATCCACATCCACCACACAAGCA
droPer2 scaffold_11:2352943-2353221 - CCAC-----------------TAAGC------CTGCCAGCTA----------------------------------------------------------TGT------GCC--------------------GCCCAGAACTC---CACGTTCCTGGCCACCATTGTCAGCTCCAACAACACGCTGCAGAC--------------------------------------------GACGAATGGGA-----------------------------------------C---GCGCCACA---AAGAGACGATCACGATCAATATTAGCGAGGTGATTGCCGCCAACAGAGGCGGA---AGGCGACACGGTGACCACCACACTAGACCCGGC---------------CA------------CGGCAA---------------------------------------------------------------CCAC---GGAGCCTGCTACCAGCACCGATAAGG----------------------------------------GCTGACACGTCATCAACAACAACACTTACATCATCCTCATCCACCACACAAGCA
droAna3 scaffold_13117:5465453-5465658 + TCCC-------------------AGC------CTGTCAGATC----------------------------------------------------------TGTCTCACAGTG--------------------GGCCAGGCGTC---TTCGTTTGCGGCCACCATATTTCAGAACAACAATCAACAGCAGTC--------------------------------------------GGTGAACGGCA-----------------------------------------C---CCTTTTGA---ATAACACCATAACGATCAGTTTTAGCGAGATAATAGCTGCAG-CAGAAGCGGAT------------------------------------AACTCCA---GTAGCA---------------CCA---------------------------------------------------------------CAAC---CGAAGC-----------------------------------------------ATCAACT---------------------------------------------ACTGACTTTTCAACC
droBip1 scf7180000396569:751486-751728 + GTGGGCCTTGCAACAGCAGCA----A---CATG----CAGCACTGCACCACC---ACCAGCAGCAGCAACAACAG--------------------------------------------------------------------------------------------CAGCAACAGCAAC-AGCAGCAG---------------------------------------------------------------------------------------------------------------------------------CAACACCAAC--AGCACTTGCAGCAA-CAGCAGCAGCACGCACATCACCAGCA---------------------TGTAGCTGCCGTCTTGCAGC---------AGCAG------------------------------------------CAACAGCAACCGCATTCACTGCATC-------------AGCAGCATGGACAGCAGCAACTCCACGGCCATACACAG-C---ACCAACA---------------------------------------------TCATTCCCACCAGCA
droKik1 scf7180000302610:1938746-1938979 + GCTTTT---------------TTAGC------CTGCCAGCTC----------------------------------------------------------TGTACCACAGTG--------------------GGCCAGGATTC---CACTTTTCTGGCCACGATCACCAGCTCGAATAATCAACAGCAGTC--------------------------------------------GGCCAATGAAA-----------------------------------------C---CCGACTGA---ATGAGACCATTATGATTAGCATTAGTGAGATTATTGCAGCTG-CCGAAGCAGCGGCTAATACCACCGAT---------------------TCCTCCA---GCA-----GCACCACC-------------------------------------------------------------------------AT---CGACAC-------------------------------------ATCAA-CAACACCCACT---------------------------------------------ACGGCGACCTCATCC
droFic1 scf7180000453826:980564-980753 - CATGG-----------------CCGC---CGTGTGCCAAATG---CAGAATTTTTTTAGTCAGCAGCAACCGCAGGAGTA-------------------------------CAAC-------------------------AAT---GGCTTGCCTATTAATTATTATCAGCAAC------------------------------------------------------------------------------------------------------------------------------------------------------------AACAACTGCAGCAG-CAGCAGCAACTGCAACTGCAACAACA---------------------GCCACC---------------------------------------------------------------------------------------------GC---AGCAGCAGC-A-----A-------------CA---ACAAC---AACAGCCAATGACGGCT---------------------------------------------ACAACTACAGCAGCA
droEle1 scf7180000490511:119436-119671 - ATTCTTAGTTCA------T-TTCAGT------C-------------------------------------------------------------------TGCTTAACAGTG--------------------GGACAGGATTC---CTCGTTTCAGGCCACGATCACTAGTTCAAACAATCAACTTCAGTC--------------------------------------------GCCGAATGGAA-----------------------------------------C---GAGCTTGA---ACGAAACCATTACGATTAACATTAGCGAAATAATTGCAGCTG-CCGATGCTTTATCAAATGACACAAAC---------------------ATTTCGA---GCTCTACAGCTCC---------------------------------------------------------------------------AAC---AGGAAC-------------------------------------ATCAA-CAACCTCCTTA---------------------------------------------ACGGATTCAACAACA
droRho1 scf7180000780080:136151-136437 - GTTGTAGCT-----------GGGAGG------C-------------------------------------------------------------------AGTGGAGCATTTAGCCAAGATCTGTGCAGATTGCATAAAATACAGACACAGCAGCAGC-ACCAGCAGCAGCAACAACAACA-ACTGCAACCGCATTTAGCCCAGTTTTCTGAGCAAATATTTTCCAAAAGCTAACGACAAAAAATCTCACACTAAATCTTAGCGTTATTTTTCCTCCTCGTCGTTGTCGTCGCGTTTAA---------------------------CTGAAATAATAACAACAA-CGACAG---------------------------------------------------------------------------------------------------------------------------------------------C---AGCAGCAAC-A-----G-------------CA---ACAGC---GACAA-CAACAGCAGCA---------------------------------------------ACATTAGCAGCAGCA
droBia1 scf7180000301623:67407-67655 + GTC-------------------------------------------------------------------------------------------------GGCCTAACAGTG--------------------GGCCAGGAGTC---CACGTTTCTGGCCTCGATCACCAGCTCGAACAACACGCTTCAGTC--------------------------------------------GGCGAATGGAA-----------------------------------------C---GAGCGTTA---ACGAGACCATTTCAATAAATATTAGCGAAATAATTGCAGCTG-CTGAGGCGGCATCAAATGCCACAGAT---------------------TCCTCCA---GCACTACAGCATCTTCCTTAGCGA---------------------------------------------------------------CAAC---TGAAGCATC-G-----T-----------------------------------CGACTTCAACAGCAACTT---------------------CTGCAACATTA---ACGACAACTACAGCA
droTak1 scf7180000415394:1311799-1312057 + CATT-----------------TTAGT------C-------------------------------------------------------------------TGCCTAACAGTG--------------------GGCCAGGAGTC---CACATTTCAGGCCACGATCACCAGTTCCAACAACCAGCTTCAGTC--------------------------------------------GGCGAATGGAA-----------------------------------------C---CAGCCTGA---ACGAGACCATTACGATTAATATCAGCGAAATAATTGCAGCTG-CTGAAGCGGCATCAAATGCCACGGAT---------------------TCCTCCA---CTAGTACAGCATCTACTTCGACGA---------------------------------------------------------------CTAA---AGAAGCCAC-A-----T-----------------------------------CGCCTTCAACAACGACCT---------------------CTGCAATATCAACGACAGAAACAACAGCA
droEug1 scf7180000409076:119275-119536 - CGTT-----------------TCAGT------A-------------------------------------------------------------------TGCTTAACAGTG--------------------GGCCAGGAGTC---GTCGTTTCTGGCCACGATCACCAGTTCAAACAATCAACTACAGTC--------------------------------------------AGCTAATGGAA-----------------------------------------C---TAGCTTGA---ATGAAACAATTACGATTAATATTAGCGAAATAATTGCAGCTG-CCGAGGCGGCATCAAATGCCACAGAA---------------------TCCTCGTCTAGTACTACGGC---------AGGCA---------------------------------------------------------------CTAC---AGAAGTCAC-A-----T-----------------------------------CAACTTCAACGGAAACTTCTATATCATCCACAACCACAGCT------------ACATCAGCAGCATCT
dm3 chrX:4139463-4139700 - AATT-----------------TCAGT------T-------------------------------------------------------------------TGTTTAACTGTG--------------------GGCCAGGAGTC---TTCATTTCTGGCCTCGATCACTAGTTCAAACAACCAGCTGCAGTC--------------------------------------------GGCGAATGGAA-----------------------------------------C---CAGCTTGAACAATGAAACAATTACAATTAACATCAGTGAAATAATTGCAGCGG-CTGAAGCGGCATCAAATACTACAGAA---------------------TCCTCCA---GCACTACAGCACCTTTGTCGACAA---------------------------------------------------------------CTAC---AGAAGCTAC-A----------------------------------------TCGACTTCA---------------------------------------------ACAGCATCATCTGCA
droSim2 x:3837701-3837944 - CTAGTTCA----------T-TTCAGT------C-------------------------------------------------------------------TGTTTAACTGTG--------------------GGCCAAGAGTC---TACATTTCTGGCCTCGATCACTAGTTCAAACAACCAGCTTCAGTC--------------------------------------------GGCGAATGGAA-----------------------------------------C---TAGCTTGAACAACGAAACCATTACAATTAACATCAGTGAAATAATAGCAGCGG-CTGAAGCGGCATCAAATGCTACAGAA---------------------TCCTCCA---GCACTACAGCACCTTCGGTGACAA---------------------------------------------------------------CTAC---AGAAGCTAC-A----------------------------------------TCGACTTCA---------------------------------------------ACAGCATCATCTGCA
droSec2 scaffold_36:13441-13699 + GTTGTCGATTCA------C-C----------------------------------ACAAGCAGCCGCAGCAGCAGCAGCA-------------------------------------------------------AATGCATC---TGCATCTGCATCAGTCATTGCAAGCAACAAC----------------------------------------------------------------------------------------------------------------------------------------ACAATCAGCAACACCACAGTCACCACAGTCA-CGGCCACGGC---------CACAGCCA-----------------GC---------------AA------------CAGTAGCAGCAAGTTGCCGCCGTCGCTTGGCGCTATCAGCAGCATTAGCATTAGCAATAGCA---ATAGCAATAGCAATAGCAAC-A-----G-------CAATAATA---TCAAC---AACAT-TAATAGCATCA---------------------------------------------ACAACAACAACAGTA
droYak3 3L:5829478-5829701 - GCCGCCACC-----ACCACCG----C---CACC----AACCA---CACCACCTCTACAGGAAGCCGCAGCGGTAGCAACAACAAGTGTTGCCGGGACAACAGCAACACACGCAGCAAAGGC----------------------------C----------------------------------------------------------------------------------------------------------------------------------------------AGCAAAG---CCACAAGCAGAACAAGCAGCAGTAGC--AGCAACAGCAACAG-CAGCAGCGGCAACAACAGCGACAG---------------------------------------------------------------------------------------------------------------------------C---GGCAACAGC-A-----A-------------CA---ACATA---AACAG-CAACAACAGCA---------------------------------------------GCGGCAGCAACAGCA
droEre2 scaffold_4690:1514800-1515007 - CATT-----------------TTAGT------T-------------------------------------------------------------------TGTTTAACAGTA--------------------TGCCAGGAGTC---TTCGTTTCTGGCCTCGATATCTAGTTCAAACAACCAACTTCAGTC--------------------------------------------GGCAAACGGAA-----------------------------------------C---GAGCTTGAACAACGAAACCATTACAATTAACATTAGTGAAATAATTGCAGCGG-CTGAAGCGGCATCAAATGCCACAGAA---------------------TCCTCCA---GCACTACCT---------CGACAA---------------------------------------------------------------CTAC---AGAGCCTA-----------------------------------------------------------------------------------------------------------CCTCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GTTGTCATTACA------T-TACAGC---CTGCTGCCAAATG----------------------------------------------------------TGT------GCG--------------------GCACAGAACTC---CACGTTCGTAGCAACAATTGTCAGCTCGAACAACACGTTGCAGTC--------------------------------------------GGCAAATGAGA-----------------------------------------C---GCGGCTCA---ATGAAACGATTACAATCAATATTAGCGAAATAATTGCTGCTG-CTGCTGCCGCTGT------------------------TGAGCCGAC---------------AACAGCAACATC---AACGA---------------------------------------------------------------CAAC---AGAAGCAAC-A-----T-------------CA---ACAACTTTAGCAG-CATCAACACTA---------------------------------------------AGGAGCACACCAGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................TC---CACGTTCGTAGCAACAATTGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................ACATC---AACGA---------------------------------------------------------------CAAC---AGAAGCAAC-A-----T-------------CA---.....................................................................................2711.001000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................GCAGTC--------------------------------------------GGCAAATGAGA-----------------------------------------C---GCGGCT...............................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
TTTGGCATT-----TGCATTTTCAGCCAGCTGCTGTCAGCTG----------------------------------------------------------TGT------GCG--------------------GCTCAGAACTC---GACGTTCGTGGCAACAATTGTCAGCTCGAACAACACGTTGCAGAC--------------------------------------------GCTGAACGAGA-----------------------------------------C---GCGGCTCA---ATGAAACGATAACAATCAATATAAGTGAGATTATTGCAGCTG-CGACGGGCGAC---GGGCCGACTGA---------------------------TA---GCACAACAGCAAC---------------------------------------------------------------------------GAC---GGACACGAC-G-----G-------------CA---ACGAC---AACAG-CAGCAACAATA---------------------------------------------ACAACCACACCTGACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
TTTGGCATT-----TGCATTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-CAGCAACAATA---------------------------------------------ACAACCACA......2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ACGAC---AACAG-CAGCAACA...............................................................19170.061001000
droGri2
CAGC-------------------CGC---CTGCTGTCAGCTG----------------------------------------------------------TCT------ACG--------------------GCGCAGAACTCAGAGACATTCGTAGCAACAATTGTCAGCTCGAATAATGCGTTGCAATC--------------------------------------------TTTGAATGAGA-----------------------------------------C---GAGACTCA---ATGAGACAATAACAATCAATATTAGCGAGGTGATTGCTGCTG-CTGCTGCGGCAGAGAACAATACA------------------------------------ACAATAGCACCAACAAGCACAA---------------------------------------------------------------CAAC---AGAAGC-------------------------------------AACAG-CATCATCATCA---------------------------------------------AGCAGCACCACAGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC-------------------------------------AACAG-CATCATCATCA---------------------------------------------...............19140.07110
droWil2
GTTC-----------------CCAGCAGCCATTTGTCAACCA----------------------------------------------------------TGT------TCC--------------------GCTCAAAACTC---TACATTTGTGGCAACAATTGTCAGCTCGAACAATACGCTTCAGTC--------------------------------------------GGCGAATGGAG-----------------------------------------CGACGCGTGTAA---ATGAAACAATAACGATCAATATCAGTGAGATAATTGCGGCGG-CAGCAACAGAC---ACCGATACAGACACAACGACATCGGAAACTACATCATCCA---GCACC------------------------------------------------------------------------------------AC---AGACGCAAC-A-----A-------------CA---ACCAC---AGCAA-CACCAGCAGTC---------------------------------------------ACTAGCACGGCACCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
CCAC-----------------TAAGC------CTGCCAGCTA----------------------------------------------------------TGT------GCC--------------------GCCCAGAACTC---CACGTTCCTGGCCACCATTGTCAGCTCCAACAACACGCTGCAGAC--------------------------------------------GACGAACGGGA-----------------------------------------C---GCGCCACA---ACGAGACGATCACGATCAATATTAGCGAGGTGATTGCCGCCG-CTGAGGCGGAA---GGCGACACGGTGACCACCACACTAGACCCGGC---------------CA------------CGGCAA---------------------------------------------------------------CCAC---GGAGCCTGCTACCAGCACCGA-AACA----------------------------------------TCTGACACGTCATCAACAACAACACTTACATCATCCACATCCACCACACAAGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CCAC-----------------TAAGC------CTGCCAGCTA----------------------------------------------------------TGT------GCC--------------------GCCCAGAACTC---CACGTTCCTGGCCACCATTGTCAGCTCCAACAACACGCTGCAGAC--------------------------------------------GACGAATGGGA-----------------------------------------C---GCGCCACA---AAGAGACGATCACGATCAATATTAGCGAGGTGATTGCCGCCAACAGAGGCGGA---AGGCGACACGGTGACCACCACACTAGACCCGGC---------------CA------------CGGCAA---------------------------------------------------------------CCAC---GGAGCCTGCTACCAGCACCGATAAGG----------------------------------------GCTGACACGTCATCAACAACAACACTTACATCATCCTCATCCACCACACAAGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................CGCTGCAGAC--------------------------------------------GACGAATGGGA-----------------------------------------C---GCGCC................................................................................................................................................................................................................................................................................................................................2711.001010000
droAna3
TCCC-------------------AGC------CTGTCAGATC----------------------------------------------------------TGTCTCACAGTG--------------------GGCCAGGCGTC---TTCGTTTGCGGCCACCATATTTCAGAACAACAATCAACAGCAGTC--------------------------------------------GGTGAACGGCA-----------------------------------------C---CCTTTTGA---ATAACACCATAACGATCAGTTTTAGCGAGATAATAGCTGCAG-CAGAAGCGGAT------------------------------------AACTCCA---GTAGCA---------------CCA---------------------------------------------------------------CAAC---CGAAGC-----------------------------------------------ATCAACT---------------------------------------------ACTGACTTTTCAACCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GTGGGCCTTGCAACAGCAGCA----A---CATG----CAGCACTGCACCACC---ACCAGCAGCAGCAACAACAG--------------------------------------------------------------------------------------------CAGCAACAGCAAC-AGCAGCAG---------------------------------------------------------------------------------------------------------------------------------CAACACCAAC--AGCACTTGCAGCAA-CAGCAGCAGCACGCACATCACCAGCA---------------------TGTAGCTGCCGTCTTGCAGC---------AGCAG------------------------------------------CAACAGCAACCGCATTCACTGCATC-------------AGCAGCATGGACAGCAGCAACTCCACGGCCATACACAG-C---ACCAACA---------------------------------------------TCATTCCCACCAGCASizeHit CountTotal NormTotal
No Reads
droKik1
GCTTTT---------------TTAGC------CTGCCAGCTC----------------------------------------------------------TGTACCACAGTG--------------------GGCCAGGATTC---CACTTTTCTGGCCACGATCACCAGCTCGAATAATCAACAGCAGTC--------------------------------------------GGCCAATGAAA-----------------------------------------C---CCGACTGA---ATGAGACCATTATGATTAGCATTAGTGAGATTATTGCAGCTG-CCGAAGCAGCGGCTAATACCACCGAT---------------------TCCTCCA---GCA-----GCACCACC-------------------------------------------------------------------------AT---CGACAC-------------------------------------ATCAA-CAACACCCACT---------------------------------------------ACGGCGACCTCATCCSizeHit CountTotal NormTotal
No Reads
droFic1
CATGG-----------------CCGC---CGTGTGCCAAATG---CAGAATTTTTTTAGTCAGCAGCAACCGCAGGAGTA-------------------------------CAAC-------------------------AAT---GGCTTGCCTATTAATTATTATCAGCAAC------------------------------------------------------------------------------------------------------------------------------------------------------------AACAACTGCAGCAG-CAGCAGCAACTGCAACTGCAACAACA---------------------GCCACC---------------------------------------------------------------------------------------------GC---AGCAGCAGC-A-----A-------------CA---ACAAC---AACAGCCAATGACGGCT---------------------------------------------ACAACTACAGCAGCASizeHit CountTotal NormTotal
No Reads
droEle1
ATTCTTAGTTCA------T-TTCAGT------C-------------------------------------------------------------------TGCTTAACAGTG--------------------GGACAGGATTC---CTCGTTTCAGGCCACGATCACTAGTTCAAACAATCAACTTCAGTC--------------------------------------------GCCGAATGGAA-----------------------------------------C---GAGCTTGA---ACGAAACCATTACGATTAACATTAGCGAAATAATTGCAGCTG-CCGATGCTTTATCAAATGACACAAAC---------------------ATTTCGA---GCTCTACAGCTCC---------------------------------------------------------------------------AAC---AGGAAC-------------------------------------ATCAA-CAACCTCCTTA---------------------------------------------ACGGATTCAACAACASizeHit CountTotal NormTotal
No Reads
droRho1
GTTGTAGCT-----------GGGAGG------C-------------------------------------------------------------------AGTGGAGCATTTAGCCAAGATCTGTGCAGATTGCATAAAATACAGACACAGCAGCAGC-ACCAGCAGCAGCAACAACAACA-ACTGCAACCGCATTTAGCCCAGTTTTCTGAGCAAATATTTTCCAAAAGCTAACGACAAAAAATCTCACACTAAATCTTAGCGTTATTTTTCCTCCTCGTCGTTGTCGTCGCGTTTAA---------------------------CTGAAATAATAACAACAA-CGACAG---------------------------------------------------------------------------------------------------------------------------------------------C---AGCAGCAAC-A-----G-------------CA---ACAGC---GACAA-CAACAGCAGCA---------------------------------------------ACATTAGCAGCAGCASizeHit CountTotal NormTotal
No Reads
droBia1
GTC-------------------------------------------------------------------------------------------------GGCCTAACAGTG--------------------GGCCAGGAGTC---CACGTTTCTGGCCTCGATCACCAGCTCGAACAACACGCTTCAGTC--------------------------------------------GGCGAATGGAA-----------------------------------------C---GAGCGTTA---ACGAGACCATTTCAATAAATATTAGCGAAATAATTGCAGCTG-CTGAGGCGGCATCAAATGCCACAGAT---------------------TCCTCCA---GCACTACAGCATCTTCCTTAGCGA---------------------------------------------------------------CAAC---TGAAGCATC-G-----T-----------------------------------CGACTTCAACAGCAACTT---------------------CTGCAACATTA---ACGACAACTACAGCASizeHit CountTotal NormTotal
No Reads
droTak1
CATT-----------------TTAGT------C-------------------------------------------------------------------TGCCTAACAGTG--------------------GGCCAGGAGTC---CACATTTCAGGCCACGATCACCAGTTCCAACAACCAGCTTCAGTC--------------------------------------------GGCGAATGGAA-----------------------------------------C---CAGCCTGA---ACGAGACCATTACGATTAATATCAGCGAAATAATTGCAGCTG-CTGAAGCGGCATCAAATGCCACGGAT---------------------TCCTCCA---CTAGTACAGCATCTACTTCGACGA---------------------------------------------------------------CTAA---AGAAGCCAC-A-----T-----------------------------------CGCCTTCAACAACGACCT---------------------CTGCAATATCAACGACAGAAACAACAGCASizeHit CountTotal NormTotal
No Reads
droEug1
CGTT-----------------TCAGT------A-------------------------------------------------------------------TGCTTAACAGTG--------------------GGCCAGGAGTC---GTCGTTTCTGGCCACGATCACCAGTTCAAACAATCAACTACAGTC--------------------------------------------AGCTAATGGAA-----------------------------------------C---TAGCTTGA---ATGAAACAATTACGATTAATATTAGCGAAATAATTGCAGCTG-CCGAGGCGGCATCAAATGCCACAGAA---------------------TCCTCGTCTAGTACTACGGC---------AGGCA---------------------------------------------------------------CTAC---AGAAGTCAC-A-----T-----------------------------------CAACTTCAACGGAAACTTCTATATCATCCACAACCACAGCT------------ACATCAGCAGCATCTSizeHit CountTotal NormTotal
No Reads
dm3
AATT-----------------TCAGT------T-------------------------------------------------------------------TGTTTAACTGTG--------------------GGCCAGGAGTC---TTCATTTCTGGCCTCGATCACTAGTTCAAACAACCAGCTGCAGTC--------------------------------------------GGCGAATGGAA-----------------------------------------C---CAGCTTGAACAATGAAACAATTACAATTAACATCAGTGAAATAATTGCAGCGG-CTGAAGCGGCATCAAATACTACAGAA---------------------TCCTCCA---GCACTACAGCACCTTTGTCGACAA---------------------------------------------------------------CTAC---AGAAGCTAC-A----------------------------------------TCGACTTCA---------------------------------------------ACAGCATCATCTGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................AGCTGCAGTC--------------------------------------------GGCGAATGGAA-----------------------------------------C---C....................................................................................................................................................................................................................................................................................................................................2318.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003302000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................AGTC--------------------------------------------GGCGAATGGAA-----------------------------------------C---CAGCTTGAAC...........................................................................................................................................................................................................................................................................................................................2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................GCAGTC--------------------------------------------GGCGAATGGAA-----------------------------------------C---CAG..................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................AATTGCAGCGG-CTGAAGCGGC.....................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCTAC-A----------------------------------------TCGACTTCA---------------------------------------------ACAGCATC.......2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................CCTCGATCACTAGTTCAAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................GCGAATGGAA-----------------------------------------C---CAGCTTGAAC...........................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................AGCTGCAGTC--------------------------------------------GGCGAATGGAA-----------------------------------------C---CAGC.................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................TGCAGTC--------------------------------------------GGCGAATGGAA-----------------------------------------C---CAGCTTG..............................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................CAGTGAAATAATTGCAGCGG-CTGAAG.........................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................ACCAGCTGCAGTC--------------------------------------------GGCGAATG.....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................TC--------------------------------------------GGCGAATGGAA-----------------------------------------C---CAGC.................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................................................CAAACAACCAGCTGCAGTC--------------------------------------------GGCGAA.......................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................AGTGAAATAATTGCAGCGG-CTGAAGCGGC.....................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................CCAGCTGCAGTC--------------------------------------------GGCGAATGG....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC-A----------------------------------------TCGACTTCA---------------------------------------------ACAGCATCATCTGC.2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................CAACCAGCTGCAGTC--------------------------------------------GGC..........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................CTGCAGTC--------------------------------------------GGCGAATGGAA-----------------------------------------C---CAG..................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCGACAA---------------------------------------------------------------CTAC---AGAAGCTAC-A----------------------------------------TCG..................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................T------T-------------------------------------------------------------------TGTTTAACTGTG--------------------GGCCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................................T-------------------------------------------------------------------TGTTTAACTGTG--------------------GGCCAGGAGTC---T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................CAGTC--------------------------------------------GGCGAATGGAA-----------------------------------------C---CAGCTTGAA............................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................AGTC--------------------------------------------GGCGAATGGAA-----------------------------------------C---CAGCTTGA.............................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................TC--------------------------------------------GGCGAATGGAA-----------------------------------------C---CAGCTTGAACAATGA......................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................TGCAGTC--------------------------------------------GGCGAATGGAA-----------------------------------------C---CAGCTTGAA............................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---AGAAGCTAC-A----------------------------------------TCGACTTCA---------------------------------------------ACAGC..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CCTCCA---GCACTACAGCACCTTTGTCGA.................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCTAC-A----------------------------------------TCGACTTCA---------------------------------------------ACAGC..........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................GCAGTC--------------------------------------------GGCGAATGGAA-----------------------------------------C---CAGCTTGAAC...........................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................AATTGCAGCGG-CTGAAGCGGCATC..................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................GCTGCAGTC--------------------------------------------GGCGAATGGAA-----------------------------------------C---.....................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................CGAATGGAA-----------------------------------------C---CAGCTTGAACA..........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CTCCA---GCACTACAGCACCTTTGTC...................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................GGCGAATGGAA-----------------------------------------C---CAGCTTGAAC...........................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CACTAGTTCAAACAACCAGCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................AA-----------------------------------------C---CAGCTTGAACAATGAAACAATTACA............................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................ACAATTAACATCAGTGAAAT...........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................GCAGTC--------------------------------------------GGCGAATGGAA-----------------------------------------C---C....................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AGT------T-------------------------------------------------------------------TGTTTAACTGTG--------------------GGCCAGGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................CTGCAGTC--------------------------------------------GGCGAATGGAA-----------------------------------------C---CAGC.................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................AATGGAA-----------------------------------------C---CAGCTTGAACAA.........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................TC--------------------------------------------GGCGAATGGAA-----------------------------------------C---CAGCTTGAAC...........................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TACAATTAACATCAGTGA..............................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ACTACAGCACCTTTGTCGACAA---------------------------------------------------------------CTAC---........................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TACTACAGAA---------------------TCCTCCA---GCACTACAGCA...........................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................ACTGTG--------------------GGCCAGGAGTC---TTCATTTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GT------T-------------------------------------------------------------------TGTTTAACTGTG--------------------GGCATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CTAGTTCA----------T-TTCAGT------C-------------------------------------------------------------------TGTTTAACTGTG--------------------GGCCAAGAGTC---TACATTTCTGGCCTCGATCACTAGTTCAAACAACCAGCTTCAGTC--------------------------------------------GGCGAATGGAA-----------------------------------------C---TAGCTTGAACAACGAAACCATTACAATTAACATCAGTGAAATAATAGCAGCGG-CTGAAGCGGCATCAAATGCTACAGAA---------------------TCCTCCA---GCACTACAGCACCTTCGGTGACAA---------------------------------------------------------------CTAC---AGAAGCTAC-A----------------------------------------TCGACTTCA---------------------------------------------ACAGCATCATCTGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
GTTGTCGATTCA------C-C----------------------------------ACAAGCAGCCGCAGCAGCAGCAGCA-------------------------------------------------------AATGCATC---TGCATCTGCATCAGTCATTGCAAGCAACAAC----------------------------------------------------------------------------------------------------------------------------------------ACAATCAGCAACACCACAGTCACCACAGTCA-CGGCCACGGC---------CACAGCCA-----------------GC---------------AA------------CAGTAGCAGCAAGTTGCCGCCGTCGCTTGGCGCTATCAGCAGCATTAGCATTAGCAATAGCA---ATAGCAATAGCAATAGCAAC-A-----G-------CAATAATA---TCAAC---AACAT-TAATAGCATCA---------------------------------------------ACAACAACAACAGTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGTTGCCGCCGTCGCTTGGCGCT..................................................................................................................................................................2714.0040130
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCCGCCGTCGCTTGGC.....................................................................................................................................................................2011.0010010
...GTCGATTCA------C-C----------------------------------ACAAGCAGCCGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTGCCGCCGTCGCTTGGCGCT..................................................................................................................................................................2611.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGCCGTCGCTTGGCGCTATCAGCAGC.........................................................................................................................................................2911.0010010
droYak3
GCCGCCACC-----ACCACCG----C---CACC----AACCA---CACCACCTCTACAGGAAGCCGCAGCGGTAGCAACAACAAGTGTTGCCGGGACAACAGCAACACACGCAGCAAAGGC----------------------------C----------------------------------------------------------------------------------------------------------------------------------------------AGCAAAG---CCACAAGCAGAACAAGCAGCAGTAGC--AGCAACAGCAACAG-CAGCAGCGGCAACAACAGCGACAG---------------------------------------------------------------------------------------------------------------------------C---GGCAACAGC-A-----A-------------CA---ACATA---AACAG-CAACAACAGCA---------------------------------------------GCGGCAGCAACAGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................CAG-CAGCAGCGGCAACAACAGC............................................................................................................................................................................................................................................................2230.33101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCA---------------------------------------------GCGGCAGC.......1980.13101000000000
..................................................................................................................................................................................................................................................................................................................................................CAACAG-CAGCAGCGGCAAC..................................................................................................................................................................................................................................................................1990.11100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-CAACAACAGCA---------------------------------------------GCGGC..........18100.10100001000000
............................................................................................................................................................................................................................................................................................................................AGCAGCAGTAGC--AGCAACA.......................................................................................................................................................................................................................................................................................19160.06101000000000
......................................................................................................................................................................................................................................................................................................................................GC--AGCAACAGCAACAG-CAGCAGC........................................................................................................................................................................................................................................................................23200.05101000000000
............................................................................................................................................................................................................................................................................................................................AGCAGCAGTAGC--AGCAACAGT.....................................................................................................................................................................................................................................................................................21200.05100001000000
............................................................................................................................................................................................................................................................................................................................................CAACAGCAACAG-CAGCAGC........................................................................................................................................................................................................................................................................19200.05101000000000
droEre2
CATT-----------------TTAGT------T-------------------------------------------------------------------TGTTTAACAGTA--------------------TGCCAGGAGTC---TTCGTTTCTGGCCTCGATATCTAGTTCAAACAACCAACTTCAGTC--------------------------------------------GGCAAACGGAA-----------------------------------------C---GAGCTTGAACAACGAAACCATTACAATTAACATTAGTGAAATAATTGCAGCGG-CTGAAGCGGCATCAAATGCCACAGAA---------------------TCCTCCA---GCACTACCT---------CGACAA---------------------------------------------------------------CTAC---AGAGCCTA-----------------------------------------------------------------------------------------------------------CCTCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/19/2015 at 03:31 PM