dvi_9133

Name	Class	Family	Strand
(A)n	Simple_repeat	Simple_repeat	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GTTAGGCGCAGTTGCGTTTTTGAGGTTAAAGACAAACACACGCAGCTCCTTGACTCGGCGGACATATCATTTTCTCAGCTCTCTGATAGCAAGACCAATTTTCTTGAATTAAAATATATAAAAAAAAAAAAAAAAAAATTAAAAAAAATTAAAAATAAATAAAGAACAAACAAAAAAAAAAAATAATTTAAAAACTTACAGACAAAGTACGATGCTTGGGAGGATAGCGAAATAAATGATCTCGACGACGC ************************************************........................((((....))))...(((((.......)))))...............................................................................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060682 9x140_0-2h_embryos_total	M061 embryo	SRR060686 Argx9_0-2h_embryos_total	M047 female body	SRR060675 140x9_ovaries_total	SRR060684 140x9_0-2h_embryos_total	V053 head	SRR060679 140x9_testes_total	V047 embryo	SRR060667 160_females_carcasses_total	SRR060665 9_females_carcasses_total	SRR060674 9x140_ovaries_total
.....................................................................................................................................................................................................AAAGACAAAGTACGATGCTTGGGAG.............................	25	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GGGAGGATAGCGAAATAAAT..............	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................ATTCCAGACAAAGTACGATGCTTGGGAG.............................	28	2	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TGGGAGGATAGCGAAATAAATGATC..........	25	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................TAAATGATCTCGACGACG.	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GTACGATGCTTGGGAGGATAGC.......................	22	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................GATAGCGAAATAAATGATCTCGACGACAC	29	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................ACAGGTCATTTTCTCAGCTGTC........................................................................................................................................................................	22	3	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................AATAAATGATCTCGACGA...	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TGTACGAAGCTTGAGAGGAT..........................	20	3	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................AAAAAAAAAAAAAAAAAAA.................................................................................................................	19	0	20	0.25	5	0	0	0	0	0	0	0	5	0	0	0	0
..............................................................................CTCTCTGATAGTATGTCCAA.........................................................................................................................................................	20	3	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0
................TTTTTGATGGTAAAGACAA........................................................................................................................................................................................................................	19	2	8	0.13	1	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................GTTGACAAAGTACGATGCTT..................................	20	3	11	0.09	1	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................AAAAAAAAAATTAAAAAAGAT......................................................................................................	21	1	13	0.08	1	0	0	0	0	0	0	0	0	0	1	0	0
.................................................................................................................ATATATAAAAAAAAAAAAA.......................................................................................................................	19	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................AAAAAAAAAAAATTAAAAAAA........................................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1
..........................................................................................ATGACCAATTTTCTAGAGTT.............................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................TAAAAGAAATTCAAAATAAAT...........................................................................................	21	2	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................CTAGGGAAATAAATGCTCT.........	19	3	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0

CAATCCGCGTCAACGCAAAAACTCCAATTTCTGTTTGTGTGCGTCGAGGAACTGAGCCGCCTGTATAGTAAAAGAGTCGAGAGACTATCGTTCTGGTTAAAAGAACTTAATTTTATATATTTTTTTTTTTTTTTTTTTAATTTTTTTTAATTTTTATTTATTTCTTGTTTGTTTTTTTTTTTTATTAAATTTTTGAATGTCTGTTTCATGCTACGAACCCTCCTATCGCTTTATTTACTAGAGCTGCTGCG ************************************************........................((((....))))...(((((.......)))))...............................................................................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060673 9_ovaries_total	SRR060674 9x140_ovaries_total	V053 head	V047 embryo	GSM1528803 follicle cells
..............................................................................GAGAGACTATCGTTCTGGTTA........................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
...........................................................................................TCTGGTTAAAAGAACTTAGTT...........................................................................................................................................	21	1	1	1.00	1	0	1	0	0	0
................................GTTTGTGTACGTCGAGGGAGT......................................................................................................................................................................................................	21	3	6	0.17	1	0	0	1	0	0
...........................................................................GTCGAGAGACTATCTTGCCG............................................................................................................................................................	20	3	9	0.11	1	0	0	1	0	0
..........................ATTTCTGTTTGTGAGCGTA..............................................................................................................................................................................................................	19	2	10	0.10	1	0	0	0	1	0
.........................................................................................................................................................TCATTTATTTCTTGTGTGTTCT............................................................................	22	3	11	0.09	1	0	0	0	0	1
..............................................................................GAGAGACTATAGTTAAGGTT.........................................................................................................................................................	20	3	20	0.05	1	0	0	0	1	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12928:6651937-6652187 +	dvi_9133	GTTAG-GCG-CAGTTGCGTTTTTGAGGTTAAAGACAAACACACGCAGCTCCTTGACTCGGCGGACATATCATTTTCTCAGC-TCTCTGA---------TAGCAAGACC--A------ATTTTCTTGAATTA-------------AAATATATA-----------------------A--AAAAAAAA--------------------------AAAAAAAAATT---------------------AAAAAAAA----TT---------------AAAAATAAATA---------------------------------------------------------------A-----AGA------------ACAAACAA---------A------------AAAAAAAAAT--AAT-------------------------------------------------------------------------------------------------------------------------TTAAAAACTTACAGACAAAGTAC-----G---------------ATGCTT-------------GGGAGGAT----AGCGAAATAAATGATCTC--GACGACGC
droMoj3	scaffold_6500:23252473-23252638 +		ATTGT---AACAATAA-TTTTTTGCGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------AAGACATTTTATTAAAACTGTTAAAAAAAAAACAAAATT---------------------CAGAAGAT----TT---------------ATTAAAAAATTA----------------------------------------------------ATTTCTAATAAAAATAACT-TAAGATTT---------ACAATGAGAATTC------------AAGAGATGTGA--T------------TGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----GATATTACAAATGATT----CTCTTAGC
droGri2	scaffold_14853:7217431-7217615 -		GTTAA-GTG----------TTTTGAGGTT------------------------------------------------------------------------------------------------------AGATGCGAACACGCTG----------------------------------C----T-------------CAGTGCTT--------------------------------------AACAGGA----AT---------------TGAATTGAATGAACACATGAACAAACGATAAAAAATAAAAACAAC--AACAAT-----------------------------------CACCAAA---GTT------------------------------------------------------AAAAACACG--------------------------AACAATTTGCA-------------------------------------------------------------------------GACAAAGTAC-----G---------------ATGCTT-------------GGGAGGAT----AGCGAAATTAATGATCTC--GATGACGC
droWil2	scf2_1100000004909:7024324-7024451 -		AAAAA---A------------------------------------------------------------------------AAAAG------------A------GG--------------------------------------------------------------------------A----A-------------------A---------AAAAAATG---------------------AAAATGAA----AC---------------AGAAATAAGAA-----------------------------AAACAAAAACAAA------------------------------------------------------------------------A--------------------------------------------------------------------G---------------------------------------------------------------------------TGT--------CAGCATTTTGCACTCAACTAACAAATGAGAGAGAAGCGAGAGAGAG-----AGAGAGAG--------------AGAGAGACGG
dp5	Unknown_singleton_958:39148-39265 -		AGAAA---C------------------------------------------------------------------------ACAAA------------A------AA--------------------------------------------------------------------------AA------------------------------------AAGGG---------------------CAGAACACGCGG--GAAAAAATGAATAAA-------------------------------------G---------------------AAA----------------AAAAA------------ACAAAGAA---------AA------------GAAGAAAAC--GGAATATCGACTAGGGGGGGAAGT------------------------ATC-GAGT----------------------------G------------------------------------------------------------------------------------------------------------------------------------GATCGCAGAA
droPer2	scaffold_1156:3213-3337 -		TTCCC---A------------------------------------------------------------------------AATGA------------G-------A----------------------------------------------------------------------------------------------ATAAAATGAAGTGAAATACAAATTAGAAAACTTGCAAATAAATTTTAAAAGCACAA--AAAAAAACAAGAACA-------------------------------------A---------------------AAA----------------ACATT------------ACAATACA---------AA------------ATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAC----AGCA---------------CAGCAAATG
droAna3	scaffold_13248:3306457-3306585 -		ATAAA---T------------------------------------------------------------------------AAATA------------A------AGATCAAAAATAA------------------------------------------------------------------------AACTCACTAAAAATGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA---------AA------------AAAAAAAATAA--G------------AGAA-----GCCAACACAAGCACT-----------------------------CTAAG-CACTTGAAA-------------------------------------------------------------------------------------------TAAAAATATAAATCTATTA--AAAAAAAA--------------AAAGAAATAA
droBip1	scf7180000395973:369265-369356 +		ATTTA---T------------------------------------------------------------------------AAATG------------A------AA------------------------------------------------------------------------------AA--------------------------AATATAAAATT---------------------TTAAAAAT----TC---------------AAAATTAAATAA----------------------------------------------------ATCC----------------ATGA---------------------------------------------------------------------------------------------------------------------------------ATGTAGATA-----AAAATAACAATTATAA-----------------------------------------------------------------------------------------------------------TTAAGACCTT
droKik1	scf7180000302344:1862773-1862909 +		AATAT---A------------------------------------------------------------------------TATAA------------A------AT---------------------------------------------------------------------------------------------------------------------------------------------AATATATAC--AAAAAAATATATAAA-------------------------------------A---------------------AAT----------------ATATA------------ACAAAATA---------AATTATAAAATAATATATAAAAT--AAT------------GTAT-----AAAA-----------------------------A---------------------------------------------------------------------------TATATACAAAATAAAATGCTA---------------TTCTT-------------AA-ATAA----TAAAT--------------AAATAAATAA
droFic1	scf7180000453839:1865404-1865532 -		CAATT---T------------------------------------------------------------------------G----------------------------------------TTTACAATAATATCAAAACAAGACG----------------------------------A----A-------------AAGCAAAAAAAAAAGAACAGAAAA---------------------GAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------GTA-----------------------------------------------------------------------AAACGATGGCGGGGCAAAAAAAAAGAAAAAATAAATTAACTATAAATAAGT--------------------------------------------------------------A--------------AAGGCCAACG
droEle1	scf7180000491249:243978-244101 -		TTGAG---C------------------------------------------------------------------------TAAAA------------A------AAATTGA--------------------------------------------------------------------------A------------------------------------------------------------------------AAAAAAAT-----------------------------------------------------------------------------------------------ATAAATA---AATAA---------AA------------AAATGAAAT--GAAATGTATTTTAAAGAAAAAAAC------------------------GTC-CAAAAAT---------------------------------------------------------------------------TCGTCCAAA----TAACCCA--------------ATCTT-------------GGACCAA---------A--------------TAAAAAATGT
droRho1	scf7180000770020:4722-4838 -		AAAACCAAG----------------------------------------------------------------CATTTAAT-TACGCGG---------A-------A---------------------------------------ACAAAGA-----------------------A--AAGAAACC--------------------------GAAAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAAGAAATTCCACATAAAATAGGGCTTAAAGAGGACA-----ATAAAATAAACTAAGG-----------------------------------------------------------------------------------------------------------AACAGGCAAA
droBia1	scf7180000298389:194775-194905 -		TTTGA---T------------------------------------------------------------------------CACTTAA-CTA-------------------------AT-TTTTTAAATAA-------------AAAAATAAA-----------------------T--AAAGTAAA--------------------------TAAATAAAAAT---------------------GAATATGA----AC---------------AGTAATCATTA---------------------------------------------------------------A-----ACA------------CCCATTAA---------A--------------------------------------------------------------------------------------------GTATAAAACTTAAAGAAAGAA----------------------------------------------------------------------------------------------------------ATATGGAA--------------ATAGAACTAT
droTak1	scf7180000415141:8776-8886 -		AAAAA---A------------------------------------------------------------------------CAAAA------------A------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------GAA----------------ATAAAATAATATATAAA---ATA-----------------------------------A--A------------ATAA-----ACGAAGGGATACATA-----------------------------GTGAAAATCTTAGGGAAAGCAAGACGGTAGAGGGAATAAGAA-----------------------------------------------------------------------------------------------------------AAAAGAAAAT
droEug1	scf7180000409553:264754-264853 +		AAAAA---C------------------------------------------------------------------------CAAATTA-CTAACTAGA--------AA------ATAC------------------------------------------------------------------------GTTTTATTAAAATCGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCA-------------------------------------------------------------------------GACAAAATAC-----G---------------ATGCTT-------------GGGAAGAT----AGCGATTTTAATGATCTC--GACGACGC
dm3	chrUextra:10816024-10816152 -		TCGCG---G------------------------------------------------------------------------CTCTCTC-TCAAACAGA--------AGTAA------ATTTTTTTCCGTAA------------------------------------------------------AA--------------------------GATTCAGTATA---------------------AAGAAAACTCAA--AGAAAAATAAATAAA-------------------------------------A---------------------TTA----------------ATAAT------------T-----------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAACGA-----G---------------ATTAT-------------AGAGAGA-------ACGAA------------AATTATTAAA
droSim2	x:12040635-12040730 -		CTTGA---A------------------------------------------------------------------------TTTAA------------A------CA------------------------------------------AAAT-----------------------C--AACAAC----------------------------AAAA------------------------------AAAAATATGA--AAAAAAC--------CAAACAAAAGAA----------------------------------------------------CTTTCCAACAAAACCAACT-ATACATAT---------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------GATACAAATA
droSec2	scaffold_53:7544-7686 +		ACCAA---A------------------------------------------------------------------------ATACA------------A------AA----------------------------------------------------------------------AG--AA-----------------AA--------------GAAAAAGT---------------------AAAAAAAT----AT---------------AAAAATACACA---------------------------------------------------------------AAATTTATA-ATACATATATATCAA----------------------------------------A------------ACAA-----AAAAAAAAAAAAACA--ATAAAAAATC-TAAAAAG---------TTTTCGAATTTGAAAAGG----------------------------------------------------------------------------------------------------------------AAACT--------------AAAAAAATAA
droYak3	X:15021855-15022008 +		CATTT-GGT------------------------------------------------------------------------CAGCCAA-CAA-------------------------G--------------------------CCC----ATAGCCCCCCGTACGAAAATACAACAAA--AA-----------------GAGGAAA---------AAAAAA--------------------------AAAAC---------------------------------------------------------------------------------------------------------------ACAAA---AAA-----------------------------------AAAA------------GTAA-----GAAA--ATAAAAACGGAAAAAAAG-TTGTGAGAAATTGAAGCGCAATTCAAGTCGACGGCG------------------------------------------------------------------------------------------------------------------------------------GATGGTGAAA
droEre2	scaffold_4770:8286382-8286517 +		TATCA---T---------------------------------------------------------------TTACTTGGC-TCTGTAA---------CAAGAAAAGGTCAA------AA----------------------------------------------------------------------ATTTTGTAAAAACTAATTGAAATATAATATAAAA---------------------TAAAA----------------------------------------------------------------AAATA--AATAATAAACAATAAATAATTTGAATAAAAATGATT-TGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGA--------------AGATATATTT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

GTTAG-GCG-CAGTTGCGTTTTTGAGGTTAAAGACAAACACACGCAGCTCCTTGACTCGGCGGACATATCATTTTCTCAGC-TCTCTGA---------TAGCAAGACC--A------ATTTTCTTGAATTA-------------AAATATATA-----------------------A--AAAAAAAA--------------------------AAAAAAAAATT---------------------AAAAAAAA----TT---------------AAAAATAAATA---------------------------------------------------------------A-----AGA------------ACAAACAA---------A------------AAAAAAAAAT--AAT-------------------------------------------------------------------------------------------------------------------------TTAAAAACTTACAGACAAAGTAC-----G---------------ATGCTT-------------GGGAGGAT----AGCGAAATAAATGATCTC--GACGACGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGAT----AGCGAAATAAAT................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------GGGAGGAT----AGCGAAATAAATGATC............	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATGATCTC--GACGACG.	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAC-----G---------------ATGCTT-------------GGGAGGAT----AGC.........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAATGATCTC--GACGA...	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................A-----------------------A--AAAAAAAA--------------------------AAAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................ATATATA-----------------------A--AAAAAAAA--------------------------AAA......................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................AAA--------------------------AAAAAAAAATT---------------------AAAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATTGT---AACAATAA-TTTTTTGCGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------AAGACATTTTATTAAAACTGTTAAAAAAAAAACAAAATT---------------------CAGAAGAT----TT---------------ATTAAAAAATTA----------------------------------------------------ATTTCTAATAAAAATAACT-TAAGATTT---------ACAATGAGAATTC------------AAGAGATGTGA--T------------TGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----GATATTACAAATGATT----CTCTTAGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

GTTAA-GTG----------TTTTGAGGTT------------------------------------------------------------------------------------------------------AGATGCGAACACGCTG----------------------------------C----T-------------CAGTGCTT--------------------------------------AACAGGA----AT---------------TGAATTGAATGAACACATGAACAAACGATAAAAAATAAAAACAAC--AACAAT-----------------------------------CACCAAA---GTT------------------------------------------------------AAAAACACG--------------------------AACAATTTGCA-------------------------------------------------------------------------GACAAAGTAC-----G---------------ATGCTT-------------GGGAGGAT----AGCGAAATTAATGATCTC--GATGACGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAC-----G---------------ATGCTT-------------GGGAGGAT----AG..........................	21	1	1.00	1	1	0
...............................................................................................................................................................................................................T--------------------------------------AACAGGA----AT---------------TGAATTGAATG.................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1

droWil2

AAAAA---A------------------------------------------------------------------------AAAAG------------A------GG--------------------------------------------------------------------------A----A-------------------A---------AAAAAATG---------------------AAAATGAA----AC---------------AGAAATAAGAA-----------------------------AAACAAAAACAAA------------------------------------------------------------------------A--------------------------------------------------------------------G---------------------------------------------------------------------------TGT--------CAGCATTTTGCACTCAACTAACAAATGAGAGAGAAGCGAGAGAGAG-----AGAGAGAG--------------AGAGAGACGG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACTAACAAATGAGAGAGA.................................................	21	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGAGAGAGAG-----AGAGAGAG--------------AGAGA.....	26	20	0.05	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGAGAGAGAG-----AGAGAGAG--------------A.........	22	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGAGAGAGAG-----AGAGAGAG--------------AGA.......	24	20	0.05	1	0	1	0	0	0

dp5

AGAAA---C------------------------------------------------------------------------ACAAA------------A------AA--------------------------------------------------------------------------AA------------------------------------AAGGG---------------------CAGAACACGCGG--GAAAAAATGAATAAA-------------------------------------G---------------------AAA----------------AAAAA------------ACAAAGAA---------AA------------GAAGAAAAC--GGAATATCGACTAGGGGGGGAAGT------------------------ATC-GAGT----------------------------G------------------------------------------------------------------------------------------------------------------------------------GATCGCAGAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--GGAATATCGACTAGGGG..................................................................................................................................................................................................................	21	12	18.75	225	0	177	3	0	4	0	3	35	3	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--GGAATATCGACTAGGGGG.................................................................................................................................................................................................................	22	12	9.42	113	0	85	0	0	0	0	1	26	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--GGAATATCGACTAGGG...................................................................................................................................................................................................................	20	12	8.58	103	0	83	4	0	1	0	1	13	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--GGAATATCGACTAGGGGGG................................................................................................................................................................................................................	23	12	3.92	47	0	30	0	0	0	0	0	17	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--GGAATATCGACTAGG....................................................................................................................................................................................................................	19	12	2.58	31	0	26	2	0	0	0	0	1	2	0
...................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAC--GGAATATCGACTAGGGG..................................................................................................................................................................................................................	23	12	1.08	13	0	13	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................AAC--GGAATATCGACTAGGGG..................................................................................................................................................................................................................	20	12	1.00	12	0	10	0	0	0	0	0	2	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................AAC--GGAATATCGACTAGGGGG.................................................................................................................................................................................................................	21	12	0.92	11	0	11	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--GGAATATCGACTAGGGGGGG...............................................................................................................................................................................................................	24	12	0.75	9	0	7	0	0	0	0	0	2	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--GGAATATCGACTAGA....................................................................................................................................................................................................................	19	12	0.33	4	0	2	0	0	0	0	0	2	0	0
..................................................................................CAAA------------A------AA--------------------------------------------------------------------------AA------------------------------------AAGGG---------------------CAGAACACGCG..............................................................................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAC--GGAATATCGACTAGGGGG.................................................................................................................................................................................................................	24	12	0.33	4	0	0	0	0	0	0	0	4	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................AAC--GGAATATCGACTAGGG...................................................................................................................................................................................................................	19	12	0.33	4	0	4	0	0	0	0	0	0	0	0
AGAAA---C------------------------------------------------------------------------ACAAA------------A------AA--------------------------------------------------------------------------AA------------------------------------AAGGG---------------------CA.......................................................................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................AAC--GGAATATCGACTAGG....................................................................................................................................................................................................................	18	12	0.33	4	0	4	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--GGAATATCGACTAGGGGGGGA..............................................................................................................................................................................................................	25	11	0.27	3	0	0	1	0	0	0	0	2	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--GGAATATCGACTAG.....................................................................................................................................................................................................................	18	12	0.25	3	0	1	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................AAC--GGAATATCGACTAGGGGGG................................................................................................................................................................................................................	22	12	0.25	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--GGAATATCGACTAGGGA..................................................................................................................................................................................................................	21	12	0.25	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--GGAATATCGACTAGGGGA.................................................................................................................................................................................................................	22	12	0.25	3	0	3	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................AAA-------------------------------------G---------------------AAA----------------AAAAA------------ACAAAGAA---------AA------------GAAGA.........................................................................................................................................................................................................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TGAATAAA-------------------------------------G---------------------AAA----------------AAAAA------------ACAAAGAA---------AG------------..............................................................................................................................................................................................................................................	27	5	0.20	1	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--GGAATATCGACTAGGGGGGGAA.............................................................................................................................................................................................................	26	11	0.18	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAC--GGAATATCGACTAGG....................................................................................................................................................................................................................	22	12	0.17	2	0	0	0	0	0	0	0	2	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................AC--GGAATATCGACTAGGGG..................................................................................................................................................................................................................	19	12	0.17	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................AAAAC--GGAATATCGACTAGGGGGG................................................................................................................................................................................................................	24	12	0.17	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--GGAATATCGACTAGGGT..................................................................................................................................................................................................................	21	12	0.17	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAAC--GGAATATCGACTAGGGG..................................................................................................................................................................................................................	25	12	0.17	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAAAC--GGAATATCGACTAGG....................................................................................................................................................................................................................	24	12	0.17	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................AAC--GGAATATCGACTAGGGGGGG...............................................................................................................................................................................................................	23	12	0.17	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAAGT------------------------ATC-GAGT----------------------------G------------------------------------------------------------------------------------------------------------------------------------GATCG.....	22	15	0.13	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGT------------------------ATC-GAGT----------------------------G------------------------------------------------------------------------------------------------------------------------------------GATCGC....	22	15	0.13	2	0	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAAGT------------------------ATC-GAGT----------------------------G------------------------------------------------------------------------------------------------------------------------------------GATC......	21	15	0.13	2	0	1	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATATCGACTAGGGGGGGAAGT------------------------...................................................................................................................................................................................	21	11	0.09	1	0	0	0	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATATCGACTAGGGGGGGAAGT------------------------AT.................................................................................................................................................................................	23	11	0.09	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................TATCGACTAGGGGGGGAAGT------------------------AAA-...............................................................................................................................................................................	23	11	0.09	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATATCGACTAGGGGGGGAAGT------------------------ATC-...............................................................................................................................................................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAC--GGAATATCGACTAG.....................................................................................................................................................................................................................	21	12	0.08	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................A---------AA------------GAAGAAAAC--GGAATATCGACT.......................................................................................................................................................................................................................	24	12	0.08	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................AC--GGAATATCGACTAGGG...................................................................................................................................................................................................................	18	12	0.08	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--GGAATATCGACTAGGGGT.................................................................................................................................................................................................................	22	12	0.08	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................AC--GGAATATCGACTAGGGGA.................................................................................................................................................................................................................	20	12	0.08	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--GGAATATCGACTAGGGGGT................................................................................................................................................................................................................	23	12	0.08	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAAAC--GGAATATCGACTAGGG...................................................................................................................................................................................................................	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCGACTAGGGGGGG...............................................................................................................................................................................................................	20	12	0.08	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................C--GGAATATCGACTAGGGGG.................................................................................................................................................................................................................	19	12	0.08	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--GGAATATCGACTAGGGAAA................................................................................................................................................................................................................	23	12	0.08	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAC--GGAATATCGACTAGGG...................................................................................................................................................................................................................	22	12	0.08	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAC--GGAATATCGACTAGG....................................................................................................................................................................................................................	21	12	0.08	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--GGAATATCGACTAGGGGAA................................................................................................................................................................................................................	23	12	0.08	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--GGAATATCGACTAGGGGGGT...............................................................................................................................................................................................................	24	12	0.08	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................AAC--GGAATATCGACTAGGGGC.................................................................................................................................................................................................................	21	12	0.08	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................AAAGAA---------AA------------GAAGAAAAC--GG.................................................................................................................................................................................................................................	19	13	0.08	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................A------------------------------------AAGGG---------------------CAGAACACGCGG--...........................................................................................................................................................................................................................................................................................................................................................................................	18	14	0.07	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................AA--------------------------------------------------------------------------AA------------------------------------AAGGG---------------------CAGAACACGCGG--GA.........................................................................................................................................................................................................................................................................................................................................................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................AA--------------------------------------------------------------------------AA------------------------------------AAGGG---------------------CAGAACACGCGG--G..........................................................................................................................................................................................................................................................................................................................................................................................	22	14	0.07	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGT------------------------ATC-GAGT----------------------------G------------------------------------------------------------------------------------------------------------------------------------GATCGCAG..	24	15	0.07	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AAGT------------------------ATC-GAGT----------------------------G------------------------------------------------------------------------------------------------------------------------------------GATCGCAGAA	22	15	0.07	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAGT------------------------ATC-GAGT----------------------------G------------------------------------------------------------------------------------------------------------------------------------GATCGCA...	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAAGT------------------------ATC-GAGT----------------------------G------------------------------------------------------------------------------------------------------------------------------------GATCGC....	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAAGT------------------------ATC-GAGT----------------------------G------------------------------------------------------------------------------------------------------------------------------------GATCAA....	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAAGT------------------------ATC-GAGT----------------------------G------------------------------------------------------------------------------------------------------------------------------------G.........	18	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--GGAATATCGACTAGAAA..................................................................................................................................................................................................................	21	17	0.06	1	0	1	0	0	0	0	0	0	0	0

droPer2

TTCCC---A------------------------------------------------------------------------AATGA------------G-------A----------------------------------------------------------------------------------------------ATAAAATGAAGTGAAATACAAATTAGAAAACTTGCAAATAAATTTTAAAAGCACAA--AAAAAAACAAGAACA-------------------------------------A---------------------AAA----------------ACATT------------ACAATACA---------AA------------ATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAC----AGCA---------------CAGCAAATG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

ATAAA---T------------------------------------------------------------------------AAATA------------A------AGATCAAAAATAA------------------------------------------------------------------------AACTCACTAAAAATGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA---------AA------------AAAAAAAATAA--G------------AGAA-----GCCAACACAAGCACT-----------------------------CTAAG-CACTTGAAA-------------------------------------------------------------------------------------------TAAAAATATAAATCTATTA--AAAAAAAA--------------AAAGAAATAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

ATTTA---T------------------------------------------------------------------------AAATG------------A------AA------------------------------------------------------------------------------AA--------------------------AATATAAAATT---------------------TTAAAAAT----TC---------------AAAATTAAATAA----------------------------------------------------ATCC----------------ATGA---------------------------------------------------------------------------------------------------------------------------------ATGTAGATA-----AAAATAACAATTATAA-----------------------------------------------------------------------------------------------------------TTAAGACCTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AATAT---A------------------------------------------------------------------------TATAA------------A------AT---------------------------------------------------------------------------------------------------------------------------------------------AATATATAC--AAAAAAATATATAAA-------------------------------------A---------------------AAT----------------ATATA------------ACAAAATA---------AATTATAAAATAATATATAAAAT--AAT------------GTAT-----AAAA-----------------------------A---------------------------------------------------------------------------TATATACAAAATAAAATGCTA---------------TTCTT-------------AA-ATAA----TAAAT--------------AAATAAATAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAATT---T------------------------------------------------------------------------G----------------------------------------TTTACAATAATATCAAAACAAGACG----------------------------------A----A-------------AAGCAAAAAAAAAAGAACAGAAAA---------------------GAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------GTA-----------------------------------------------------------------------AAACGATGGCGGGGCAAAAAAAAAGAAAAAATAAATTAACTATAAATAAGT--------------------------------------------------------------A--------------AAGGCCAACG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTGAG---C------------------------------------------------------------------------TAAAA------------A------AAATTGA--------------------------------------------------------------------------A------------------------------------------------------------------------AAAAAAAT-----------------------------------------------------------------------------------------------ATAAATA---AATAA---------AA------------AAATGAAAT--GAAATGTATTTTAAAGAAAAAAAC------------------------GTC-CAAAAAT---------------------------------------------------------------------------TCGTCCAAA----TAACCCA--------------ATCTT-------------GGACCAA---------A--------------TAAAAAATGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAAACCAAG----------------------------------------------------------------CATTTAAT-TACGCGG---------A-------A---------------------------------------ACAAAGA-----------------------A--AAGAAACC--------------------------GAAAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAAGAAATTCCACATAAAATAGGGCTTAAAGAGGACA-----ATAAAATAAACTAAGG-----------------------------------------------------------------------------------------------------------AACAGGCAAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTTGA---T------------------------------------------------------------------------CACTTAA-CTA-------------------------AT-TTTTTAAATAA-------------AAAAATAAA-----------------------T--AAAGTAAA--------------------------TAAATAAAAAT---------------------GAATATGA----AC---------------AGTAATCATTA---------------------------------------------------------------A-----ACA------------CCCATTAA---------A--------------------------------------------------------------------------------------------GTATAAAACTTAAAGAAAGAA----------------------------------------------------------------------------------------------------------ATATGGAA--------------ATAGAACTAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAAAA---A------------------------------------------------------------------------CAAAA------------A------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------GAA----------------ATAAAATAATATATAAA---ATA-----------------------------------A--A------------ATAA-----ACGAAGGGATACATA-----------------------------GTGAAAATCTTAGGGAAAGCAAGACGGTAGAGGGAATAAGAA-----------------------------------------------------------------------------------------------------------AAAAGAAAAT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AAAAA---C------------------------------------------------------------------------CAAATTA-CTAACTAGA--------AA------ATAC------------------------------------------------------------------------GTTTTATTAAAATCGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCA-------------------------------------------------------------------------GACAAAATAC-----G---------------ATGCTT-------------GGGAAGAT----AGCGATTTTAATGATCTC--GACGACGC	Size	Hit Count	Total Norm	Total
No Reads

dm3

TCGCG---G------------------------------------------------------------------------CTCTCTC-TCAAACAGA--------AGTAA------ATTTTTTTCCGTAA------------------------------------------------------AA--------------------------GATTCAGTATA---------------------AAGAAAACTCAA--AGAAAAATAAATAAA-------------------------------------A---------------------TTA----------------ATAAT------------T-----------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAACGA-----G---------------ATTAT-------------AGAGAGA-------ACGAA------------AATTATTAAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................TAAT------------T-----------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAACGA-----G---------------ATTAT-------------AGAGA....................................	26	19	625.11	11877	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	3	14	3	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	5	0	3	0	0	0	0	0	9	0	3	0	22	0	0	0	0	6	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	5	15	0	10	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	1	0	0	0	0	2	6	0	1	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	25	12	85	60	91	1	41	145	84	170	25	3	33	99	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	2	28	0	6	0	0	5	0	0	8	0	4	0	12	4	137	0	2	0	4	5	3	0	0	0	26	0	0	1	2577	18	1929	69	2917	1637	928	24	0	0	0	0	0	0	0	0	12	4	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	2	0	0	0	4	30	87	19	38	0	0	0	0	0	0	10	132	110	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22	2	2	21	3	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................TAAT------------T-----------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAACGA-----G---------------ATTAT-------------AGAGAG...................................	27	19	258.32	4908	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	7	0	0	0	0	0	0	2	0	0	0	0	0	0	10	0	0	0	3	1	0	0	1	0	0	1	8	0	2	0	9	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	3	47	49	22	0	65	54	105	97	35	0	22	59	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	5	1	19	0	0	1	0	1	0	2	0	0	0	0	1	4	63	0	4	3	8	0	8	0	0	0	7	0	0	1	1149	8	244	33	1422	611	454	10	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	19	35	11	25	0	0	0	0	0	0	6	31	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	1	5	7	2	0	0	0	0	0
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....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAT-------------AGAGAGA-------ACGAA------------AATTATTA..	24	19	0.21	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................ATAAT------------T-----------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAACGA-----G---------------ATTAT-------------AGAGAG...................................	28	19	0.21	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAACGA-----G---------------ATTAT-------------AGAGAGA-------ACGAA------------A.........	28	19	0.21	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAACGA-----G---------------ATTAT-------------AGAGA....................................	20	19	0.21	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------ATTAT-------------AGAGAGA-------ACGAA------------AATTATTAA.	27	19	0.21	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................T------------T-----------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAACGA-----G---------------ATTAT-------------AGAGAGA-------AA.........................	27	19	0.21	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................T------------T-----------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAACGA-----G---------------ATTAT-------------AGAGAGA-------ACGA.......................	29	19	0.21	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSim2

CTTGA---A------------------------------------------------------------------------TTTAA------------A------CA------------------------------------------AAAT-----------------------C--AACAAC----------------------------AAAA------------------------------AAAAATATGA--AAAAAAC--------CAAACAAAAGAA----------------------------------------------------CTTTCCAACAAAACCAACT-ATACATAT---------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------GATACAAATA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................................................................................................AAAAGAA----------------------------------------------------CTTTCCAACAAAACCAACT-........................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ACCAA---A------------------------------------------------------------------------ATACA------------A------AA----------------------------------------------------------------------AG--AA-----------------AA--------------GAAAAAGT---------------------AAAAAAAT----AT---------------AAAAATACACA---------------------------------------------------------------AAATTTATA-ATACATATATATCAA----------------------------------------A------------ACAA-----AAAAAAAAAAAAACA--ATAAAAAATC-TAAAAAG---------TTTTCGAATTTGAAAAGG----------------------------------------------------------------------------------------------------------------AAACT--------------AAAAAAATAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

CATTT-GGT------------------------------------------------------------------------CAGCCAA-CAA-------------------------G--------------------------CCC----ATAGCCCCCCGTACGAAAATACAACAAA--AA-----------------GAGGAAA---------AAAAAA--------------------------AAAAC---------------------------------------------------------------------------------------------------------------ACAAA---AAA-----------------------------------AAAA------------GTAA-----GAAA--ATAAAAACGGAAAAAAAG-TTGTGAGAAATTGAAGCGCAATTCAAGTCGACGGCG------------------------------------------------------------------------------------------------------------------------------------GATGGTGAAA

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

TATCA---T---------------------------------------------------------------TTACTTGGC-TCTGTAA---------CAAGAAAAGGTCAA------AA----------------------------------------------------------------------ATTTTGTAAAAACTAATTGAAATATAATATAAAA---------------------TAAAA----------------------------------------------------------------AAATA--AATAATAAACAATAAATAATTTGAATAAAAATGATT-TGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGA--------------AGATATATTT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_9133

scaffold_12928:6651987-6652137 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-4.3	-4.2	-4.0