ID:

dvi_9068

 Coordinate:

scaffold_12928:6054074-6054155 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.3 -14.3 -14.3

Flybase annnotation

CDS [Dvir\GJ16452-cds]; exon [dvir_GLEANR_16954:1]; CDS [Dvir\GJ16452-cds]; exon [dvir_GLEANR_16954:2]; intron [Dvir\GJ16452-in]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------##################################################
GAAGCTGAACGCCGTCAATCCTGCTCTGCAGGCTCACATTGTCCGCAATCGTAAGTGGATTTTGTTGCTGTTTCTGTTTTGTTTACGTAACTTTTGAGATGTTTCAAACAATTTGCATTTGTCCATTTACAGTTGCCGGCTGGAACAAGGACTACAAGCCCGGTCCATATCCAAAAACCGAC
**************************************************((((((((((.....(((......(((((.....((((..........))))...)))))....)))...))))))))))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060678
9x140_testes_total
 M047
female body
 SRR060680
 9xArg_testes_total
 SRR060667
160_females_carcasses_total
 SRR060655
9x160_testes_total
 SRR060689
160x9_testes_total
 M061
embryo
 SRR060656
9x160_ovaries_total
 SRR060669
160x9_females_carcasses_total
 SRR060670
9_testes_total
 V116
male body		 SRR060672
9x160_females_carcasses_total
 V047
embryo
 SRR060664
9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR060683
160_testes_total
 V053
head
 SRR060674
9x140_ovaries_total
 SRR060676
9xArg_ovaries_total
 M028
head
 SRR060671
9x160_males_carcasses_total
 SRR060681
Argx9_testes_total
..................................................GTAAGTGGATTTTGTTGCTGTTTC............................................................................................................ 24 0 1 13.00 13 8 0 2 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGTGGATTTTGTTGCTGT............................................................................................................... 21 0 1 7.00 7 3 0 2 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGTGGATTTTGTTGCTGTTT............................................................................................................. 23 0 1 6.00 6 2 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................GTAAGTGGATTTTGTTGCTGTTTCT........................................................................................................... 25 0 1 6.00 6 4 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................GTAAGTGGATTTTGTTGCTG................................................................................................................ 20 0 1 4.00 4 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GAACAAGGACTACAAGCCCGGT.................. 22 0 1 3.00 3 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................GACTACAAGCCCGGTCCAT.............. 19 0 1 2.00 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................TTTGCATTTGTCCATTTACAGT................................................. 22 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0
..................................................GTAAGTGGATTTTGTTGCTGTTTCTT.......................................................................................................... 26 1 1 2.00 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGTGGATTTTGTTGCTGTTTCTG.......................................................................................................... 26 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................GTAAGTGGATTTTGTTGC.................................................................................................................. 18 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GAACAAGGACTACAAGCCCG.................... 20 0 1 2.00 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGTGGATTTTGTTGCTC................................................................................................................ 20 1 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CTGAACGCCGTCAATCCTGCTCTGC......................................................................................................................................................... 25 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
........ACGCCGTCAATCCTGCTCTGCAGGCTCA.................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CAAACAATTTGCATTTGTCCATTTAC.................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................GCCGGCTGGAACAAGGACTACAAGCCCGG................... 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGTGGATTTTGTTGCTGTTTA............................................................................................................ 24 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTGTTTACGTAACTTTTGAGATGTTT.............................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TCCTGCTCTGCAGGCTCACA................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............CGTCAATCCTGCTCTGCAGGCTC................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......GAACGCCGTCAATCCTGCT............................................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AACTTTTGAGATGTTTCAAAC......................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......AACGCCGTCAATCCTGCTCTGCA........................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTACGTGGATTTTGTTGCTG................................................................................................................ 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................ATTGTCCGCAATCGTAAGTGGA........................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........CGCCGTCAATCCTGCTCTGCAGGCTCA.................................................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................ATGTTTCAAACAATTTGCATT............................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GGTCCATATCCAAAAACCGAC 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TTTGCATTTGTCCATGTACAGT................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................AGGACTACAAGCCCGGTCCATATC........... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CTGAACGCCGTCAATCCTGCTCTGCAG....................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AACTTTTGAGATGTTTCAAACA........................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................GTTTCTGTTTTGTTTACGTAACTT......................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CAAGGACTACAAGCCCGGTCT................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................CAAACAATTTGCATTTGTCCATTTACAG.................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......GAACGCCGTCAATCCTGCTCTGCAGGC..................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................AGGACTACAAGCCCGGTCCATATCC.......... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............GTCAATCCTGCTCTGCAGGCT.................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................GACTACAAGCCCGCTCCATA............. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................TCTGCAGGCTCACATTGTCCG......................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................GGAACAAGGACTACAAGCCCG.................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CAAGGACTACAAGCCCGGT.................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TACGTAACTTTTGAGATGTTTCAAACAA....................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................AACAAGGACTACAAGCCCGGT.................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................AGGACTACAAGCCCGGTCCATA............. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGTGGATTTTGTTGCTGTT.............................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................ATCCTGCTTTGCACGCTCA.................................................................................................................................................. 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTGCAAAAAATTCGCATTTGTC........................................................... 22 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................TTTGTTGCTGTTTCTGTTGTTTTTA................................................................................................. 25 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................AACCAGGACTTGAAGCCCG.................... 19 3 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................ATCCTGCGCTGCACGCTCGC................................................................................................................................................. 20 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTTCGACTTGCGGCAGTTAGGACGAGACGTCCGAGTGTAACAGGCGTTAGCATTCACCTAAAACAACGACAAAGACAAAACAAATGCATTGAAAACTCTACAAAGTTTGTTAAACGTAAACAGGTAAATGTCAACGGCCGACCTTGTTCCTGATGTTCGGGCCAGGTATAGGTTTTTGGCTG
****************************************************((((((((((.....(((......(((((.....((((..........))))...)))))....)))...))))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060670
9_testes_total
 SRR060680
 9xArg_testes_total
 V053
head
 V116
male body		 SRR060674
9x140_ovaries_total
.................................................................ACGACAAAGACAAAACAAATGC............................................................................................... 22 0 1 1.00 1 0 1 0 0 0
..TCGACTTGCGGCAGTTAGGACGGG............................................................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0
....................................................................................CGCATTGAAAACGCGACAAAGT............................................................................ 22 3 4 0.25 1 0 0 1 0 0
..................................................................................................................CGTAGAAAGGTAAATGGCAAC............................................... 21 3 5 0.20 1 0 0 0 1 0
.....................................................................................CCATTGAAATCCCTACAAAGT............................................................................ 21 3 8 0.13 1 0 0 1 0 0
............................................................AAACAACGACAAAGACAA........................................................................................................ 18 0 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:6054024-6054205 - dvi_9068 GAAGCTGAACGCCGTCAATCCTGCTCTGCAGGCTCACATTGTCCGCAATCGTAAGTGGATTTTGTTGC------------------------------------------------------------T--GTTTC------TGTTTTGTTTACGTAACTTTTGAGATGTT----------------------------TCAAA---CAAT------TTGCA---------TT-TG--T-CCATT---TACAGTTGCCGGCTGGAACAAGGACTACAAGCCCGGTCCATATCCAAAAACCGAC
droMoj3 scaffold_6359:4415665-4415848 - AAAGCTAAGCGCTGCCAATCCAGCTCTGCAGGCCCACATTGTCCGCAATCGTAAGTGCATATCGCTAA------------------------------------------------------------A--GTTTC------TGTTTTGTTTACGTAACTTTTGCG-GAC-----------------G--A-----GCTTTTGA---CA-A------TTGCA---------TT-TG--T-CTATT---TACAGTCGCCGGCTGGAATAAGGACTACAAACCGGGACCATATCCCAAAACCGAG
droGri2 scaffold_14853:5027517-5027717 - AAAGCTGAGCGCTTCGAATCCGGCTCTGTCGCTTCAGATTGCCCGCAATCGTGAGTAGAGC-----GC---A-TTTCTGTTT----G---C-----------------------------------GGT--TTTTC------TGTTTTGTTTACGTAACTTTTGAGGTGTTT------------TGCG--AATG--GTCTTAACCGTT-AT------TTGCA--------------A---CAATT---CACAGTTGCTGGCTGGAACAAGGACTACAAGCCGGCACCGTATCCAAGGACAGAG
droWil2 scf2_1100000004963:2481417-2481594 + GAAGGTGTTGGTAGCCAATCCTTCATTGGCCCGCCTGGCTGTAAGGAATCGTAAGTTGGACAATT-GC---T-TTACCAAAT----G---C-------------------------------G---TGC--TTTTT------TG-TTAGTTTACGTAACTTGTT-----------------------------------------------------TTGCC---------TT-T---TCTT-TT---TTAAGTGGCTGGCTGGAACAAGGACTACAAGCCGGCTGCCTATCCAAAAACAGAA
dp5 XL_group1a:377125-377342 - GAAATTGTGTGTGGCCAATCCTGCTCTGGCCAGCCAGGTGGTTCGCAGCAGTAAGTTTTCCGTGG-GCCGATA------------------AA-----------TATGACCATCTGTGGGTTC----GG--CATTC------TGTTTTGTTTACGTAACGTTAGAA-TGCT--------------GTA--AAAG--ACTACAGC------CTTATATCCGTT---------CT-------CA--TTGCATTAGTGGCTGGATGGAACAAGGACTACAAGCCAGCCCCCTTCCCAAAGACAGAG
droPer2 scaffold_26:288226-288443 + GAAATTGTGTGTGGCCAATCCTGCTCTGGCCAGCCAGGTGGTTCGCAGCAGTAAGTTTTCCGTGG-GCCGATA------------------AA-----------TATGACCATCTGTGGGTTC----GG--CATTC------TGTTTTGTTTACGTAACGTTTGAA-TGGT--------------GTA--AAAG--ACTACAAC------CTTATATCCGTT---------CT-------CA--TTGCATTAGTGGCTGGATGGAACAAGGACTACAAGCCAGCCCCCTTCCCAAAGACAGAG
droAna3 scaffold_13117:4327710-4327900 - AAAGCTATGCGCCGCCAATCCTGCTCTTGCCCGCCAGGCGGTGCGCAGCAGTAAGTAATCC-----CC---C-TTACCGGA----GG---CA-TCCCT--G---------------------------------CA------TGTTTTGTTTACGTAACATG--GA-TGCT--------------AAG--AGA---GCTA-ATA------T------TCGTT---------G-TT---T-CT--T---TGTAGTGGCCGGGTGGAACAAGGACTTCAAGCCAGCACCGTTCCCCAAGACGGAG
droBip1 scf7180000396383:78327-78517 + AAAGCTATGCGCCGCCAATCCTGCCCTGGCACGCCAGGCGGTGCGCAGCAGTAAGTAATCC-----CC---A-TAACCGGAC----A---CA-TCGA-----------------------------------TGCA------TGTTTTGTTTACGTAACATTGAT---GCT----------------A--AGAG--ACCCAATA------T------TCGTT---------A-AT---T-CG--T---TACAGTGGCCGGCTGGAACAAGGACTTTAAGCCAGCACCATTCCCCAAGACGGAG
droKik1 scf7180000302544:717148-717374 + GAAGCTTTGCTCCGCCAATCCAGCCTTGGCCCGCCAGGCGGTGCGCAGCAGTAAGTATCGCCATA-GCCCCCTTAACCG-----------------------------AGCCCGAGAAGGCCC----GCTTTATGCT-----GTTTTTGTTTACGTAACTTTGAAT-CGTTTCTTGTTTCCCCCTGCG--ATT---GCTTCACCT------------GCCTT---------C-TG---C-C--TG---GACAGTGGCTGGTTGGAACAAGGACTTTAAGCCCGCCCCCTATCCCAAGACGGAG
droFic1 scf7180000454072:845457-845654 + AAAGCTATGCGCCGCAAATCCCGTCGTGGCTCGCCAGGCGGTACGCAGCAGTAAGTGCAGTCT-G-GCCATC-AAACCAGGAGCTGG-----------------------------------------A--GAGCC------TGTTTTGTTTACGTAACTATTGAC-AGTA--------------CTC--A-----GATTCAAC------A------TTGTT---------T-TT---C-CC--G---TATAGTGGCCGGCTGGAACAAGGACTACAAGCCGGCACCCTATCCACAAACGGAA
droEle1 scf7180000491044:463525-463734 - AAAGCTATGCGCCGCCAATCCCGCCGTGGTTCGCCAGGCGGTGCGCAGCAGTAAGTGAAAAACCG-GCAGA-------G----CTGGGGAAA-TCCGT--AGAAC-----------------C---TGC--GCCTC------TGTTTTGTTTACGTAACTTTTGAG-TGTA--------------CGC--A-----GTCCTAAA------C------TAGTT---------TC-CCTCCTCG------TTTAGTGGCTGGCTGGAACAAGGACTACAAGCCGGCACCCTTTCCACAAACGGAG
droRho1 scf7180000776942:148766-148965 - AAAGCTATGCGCCGCCAATCCCGCCATGATTCGCCAGGCGGTACGCGGCAGTAAGTGAAAATCCG-GAAGA-------G----CAGG---AA-TCCCG--ACAAC-----------------C---TGC--GCCTC------TGTTTTGTTTACGTAACTTTTGTT-CT------------------C--T-----GTCTAAAA------C------TAGTT---------T-TT---C-CC--G---TTTAGTGGCTGGCTGGAACAAGGACTATAAGCCGGCACCCTTTCCACAGACGGAG
droBia1 scf7180000301760:2827896-2828105 + AAAGCTGTGCGCCGCCCATCCCGCCGTGGCTCGCCAGGCGATCCGCAGCAGTAAGTGCCGAGGCG-GAGGA-------G----CAGG---AA-TCCGG--CGAAT-----------------G---TGC--CCCTCTGTTTACCTCTTGTTTACGTAACTTTGGCC-TGGG--------------CCG--A-----GCTAAGAA------C------TCGTT---------T-TC---C-CA--T---TCTAGTGGCTGGCTGGAACAAGGACTTCAAGCCGGCACCCTATCCACAGACGGAG
droTak1 scf7180000413955:24005-24219 - AAAGCTGTGCGCCGCCAATCCCGCCGTGGCTCGCCAGGCGGTCAGGAGCAGTAAGTGGCAGTGGGGGTGAA-------G----C-------CA-----------GGTGACCAGCAAT-----CCGGTGC--TCCCC------TGTTTTGTTTACGTAACTTTTGTA-TGCA--------------GACTAAAAGAAGCTAATAA------C------CCGAT----------TTT---C-CC--C---TTTAGTGGCTGGCTGGAACAAGGACTACAAGCCGGCGCCCTATCCGCAGACGGAG
droEug1 scf7180000409522:243003-243209 - AAAGCTATGCGCTGCCAATCCTGCCGTGACTCGCCAGGCCCTCCGGAGCAGTAAGTGAAAATTGG-GCAGA-------A----GAGG---AA-ACGCG--AGAAC-----------------C---TCT--ACATA------TGTTTTGTTTACGTAACTTTTTGG-CGTA--------------CCA--A-----GCTTAAAA------C------TTGTT---------TT-TTTTTTCG------TTTAGTGGCCGGCTGGAACAAGGACTTCAAGCCAGGTCCTTATCCACAAACAGAG
dm3 chrX:6571865-6572082 - AAAGCTGTGCGCCGCCAATCCCGTCGTGGCTCGCCAGGCGATCCGCAGCAGTAAGTGTGAATCGGGGCTGC-------G----CTGG---CA-ACAGT--GCAAC-----------------C---TGC--CCCAC------TGTTTTGTTTACGTAACTTTTGCA-TGCA--------------CCG--AATG--GCTACAAA------T------TCGAATTTCTCGCCAT-T---TACG--T---TTTAGTGGCTGGCTGGAATAAGGACTACAAGCCGGGTCCGTATCCACAGACGGAG
droSim2 x:6175030-6175238 - dsi_6594 AAAGCTGTGCGCCGCCAATCCCGTCGTGGCTCGCCAGGCGATCCGCAGCAGTAAGTGTGAATCGGGGCTGT-------G----CTGG---CA-ACCGT--GCAAC-----------------C---TGC--CCCAC------TGTTTTGTTTACGTAACTTTTGCA-TACA--------------CCG--AATG--GCTACAAA------C------TCGCC---------AT-T---TCTG--T---TCTAGTGGCTGGCTGGAACAAGGACTACAAGCCGGGTCCGTATCCACAGACGGAG
droSec2 scaffold_4:232460-232668 + AAAGCTGTGCGCCGCCAATCCCGCCGTGGCTCGCCAGGCGATCCGCAGCAGTAAGTGTGAATCGGGGCTGC-------G----CTGG---CA-ACCGT--GCAAC-----------------C---TGC--CCCAC------TGTTTTGTTTACGTAACTTTTGCA-TGCA--------------CCG--AATG--GCTACAAA------C------TCGCC---------AT-T---TCCG--T---TCTAGTGGCTGGCTGGAACAAGGACTACAAGCCGGGTCCGTATCCACAGACGGAG
droYak3 X:2535305-2535515 - AAAGCTGTGCGCCGCCAATCCCGCCGTGGCACGCCAGGCGATCCGCAGCAGTAAGTGGAGATCCG-GATGC-------G----CTGG---CA-TCCGCAGGCAAC-----------------C---TGC--TCCTC------TGTTTTGTTTACGTAACTTTTGCA-TGCA--------------CCG--AAT---GCTACAAA---CA-C------TCGCC---------TT-T---TCCG--T---TTCAGTGGCTGGCTGGAACAAAGACTACAAGCCGGGTCCGTATCCACAGACGGAG
droEre2 scaffold_4690:15498776-15498983 - AAAGCTGTGCGCCGCCAATCCTGCCGTGGCTCGCCAGGCGATCCGCAGCAGTAAGTGGAGATCCG-GATGC-------G----CTGG---CA-TCTGT--GCATT-----------------C--GTGC--TCCTC------TGTTTTGTTTACGTAACTTTTGCA-TGTA--------------CCG--AAT---GCTACAAA------C------TCGCC---------TT-T---TTCG--T---TTTAGTGGCTGGCTGGAACAAAGACTACAAGCCGGGACCGTATCCACAGACGGAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GAAGCTGAACGCCGTCAATCCTGCTCTGCAGGCTCACATTGTCCGCAATCGTAAGTGGATTTTGTTGC------------------------------------------------------------T--GTTTC------TGTTTTGTTTACGTAACTTTTGAGATGTT----------------------------TCAAA---CAAT------TTGCA---------TT-TG--T-CCATT---TACAGTTGCCGGCTGGAACAAGGACTACAAGCCCGGTCCATATCCAAAAACCGACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................GTAAGTGGATTTTGTTGC------------------------------------------------------------T--GTTTC------.................................................................................................................................................................24113.0013000001000000000000000000000080200000000200000000000000000000000
..................................................GTAAGTGGATTTTGTTGC------------------------------------------------------------T--GT..........................................................................................................................................................................2117.007000001000000000000000000000030200000000000000000000000000000010
..................................................GTAAGTGGATTTTGTTGC------------------------------------------------------------T--GTTT........................................................................................................................................................................2316.006000000100000000000000000000020000000000100000000000000000000110
..................................................GTAAGTGGATTTTGTTGC------------------------------------------------------------T--GTTTC------T................................................................................................................................................................2516.006010000000000000000000000000040100000000000000000000000000000000
..................................................GTAAGTGGATTTTGTTGC------------------------------------------------------------T--G...........................................................................................................................................................................2014.004000000000000000000000000000030100000000000000000000000000000000
.......................................................................................................................................................................................................................................................................GAACAAGGACTACAAGCCCGGT..................2213.003000000000000001001100000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................GACTACAAGCCCGGTCCAT..............1912.002000000000000000000010000000001000000000000000000000000000000000
..................................................................................................................................................................................................................T------TTGCA---------TT-TG--T-CCATT---TACAGT.................................................2212.002000000000000000000000000000000000000000000000000000000000001100
..................................................GTAAGTGGATTTTGTTGC------------------------------------------------------------T--GTTTC------TT...............................................................................................................................................................2612.002000000000000000000002000000000000000000000000000000000000000000
..................................................GTAAGTGGATTTTGTTGC------------------------------------------------------------T--GTTTC------TG...............................................................................................................................................................2612.002000000000000000000000000001010000000000000000000000000000000000
..................................................GTAAGTGGATTTTGTTGC------------------------------------------------------------...............................................................................................................................................................................1812.002000000200000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................GAACAAGGACTACAAGCCCG....................2012.002000100000000000001000000000000000000000000000000000000000000000
..................................................GTAAGTGGATTTTGTTGC------------------------------------------------------------T--C...........................................................................................................................................................................2012.002000002000000000000000000000000000000000000000000000000000000000
....CTGAACGCCGTCAATCCTGCTCTGC..................................................................................................................................................................................................................................................................................2512.002000000000000000000000000000000000200000000000000000000000000000
........ACGCCGTCAATCCTGCTCTGCAGGCTCA...........................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................CAAA---CAAT------TTGCA---------TT-TG--T-CCATT---TAC....................................................2611.001000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................GCCGGCTGGAACAAGGACTACAAGCCCGG...................2911.001000100000000000000000000000000000000000000000000000000000000000
..................................................GTAAGTGGATTTTGTTGC------------------------------------------------------------T--GTTTA------.................................................................................................................................................................2411.001000000000000000000000000000000000000000100000000000000000000000
..................................................................................................................................................TTGTTTACGTAACTTTTGAGATGTT----------------------------T.......................................................................................................2611.001000000000000000000000000000000100000000000000000000000000000000
..................TCCTGCTCTGCAGGCTCACA.........................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
............CGTCAATCCTGCTCTGCAGGCTC............................................................................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
......GAACGCCGTCAATCCTGCT......................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................AACTTTTGAGATGTT----------------------------TCAAA---C...............................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......AACGCCGTCAATCCTGCTCTGCA.................................................................................................................................................................................................................................................................................2311.001000000000000000000000010000000000000000000000000000000000000000
.....................................ATTGTCCGCAATCGTAAGTGGA....................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
.........CGCCGTCAATCCTGCTCTGCAGGCTCA...........................................................................................................................................................................................................................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................ATGTT----------------------------TCAAA---CAAT------TTGCA---------TT-.....................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GGTCCATATCCAAAAACCGAC2111.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................AGGACTACAAGCCCGGTCCATATC...........2411.001000000000000000000010000000000000000000000000000000000000000000
....CTGAACGCCGTCAATCCTGCTCTGCAG................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................AACTTTTGAGATGTT----------------------------TCAAA---CA..............................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................GTTTC------TGTTTTGTTTACGTAACTT..............................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................CAAGGACTACAAGCCCGGTCT................2111.001000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................CAAA---CAAT------TTGCA---------TT-TG--T-CCATT---TACAG..................................................2811.001000000000000000000000000000010000000000000000000000000000000000
......GAACGCCGTCAATCCTGCTCTGCAGGC..............................................................................................................................................................................................................................................................................2711.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................AGGACTACAAGCCCGGTCCATATCC..........2511.001001000000000000000000000000000000000000000000000000000000000000
.............GTCAATCCTGCTCTGCAGGCT.............................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................TCTGCAGGCTCACATTGTCCG..................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GGAACAAGGACTACAAGCCCG....................2111.001000000000000000000010000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................CAAGGACTACAAGCCCGGT..................1911.001000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................TACGTAACTTTTGAGATGTT----------------------------TCAAA---CAA.............................................................................................2811.001000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................................................................................................................................AACAAGGACTACAAGCCCGGT..................2111.001000000000000000000100000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................AGGACTACAAGCCCGGTCCATA.............2211.001001000000000000000000000000000000000000000000000000000000000000
..................................................GTAAGTGGATTTTGTTGC------------------------------------------------------------T--GTT.........................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
droMoj3
AAAGCTAAGCGCTGCCAATCCAGCTCTGCAGGCCCACATTGTCCGCAATCGTAAGTGCATATCGCTAA------------------------------------------------------------A--GTTTC------TGTTTTGTTTACGTAACTTTTGCG-GAC-----------------G--A-----GCTTTTGA---CA-A------TTGCA---------TT-TG--T-CTATT---TACAGTCGCCGGCTGGAATAAGGACTACAAACCGGGACCATATCCCAAAACCGAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................GGAATAAGGACTACAAACCGGGACCATA.............2811.001100000
............TGCCAATCCAGCTCTGCAGGC..............................................................................................................................................................................................................................................................................2111.001100000
droGri2
AAAGCTGAGCGCTTCGAATCCGGCTCTGTCGCTTCAGATTGCCCGCAATCGTGAGTAGAGC-----GC---A-TTTCTGTTT----G---C-----------------------------------GGT--TTTTC------TGTTTTGTTTACGTAACTTTTGAGGTGTTT------------TGCG--AATG--GTCTTAACCGTT-AT------TTGCA--------------A---CAATT---CACAGTTGCTGGCTGGAACAAGGACTACAAGCCGGCACCGTATCCAAGGACAGAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....CTGAGCGCTTCGAATCCGG........................................................................................................................................................................................................................................................................................1911.00110
...................................................................................................................................................................................................................................................................GCTGGAACAAGGACTACA..........................1811.00110
droWil2
GAAGGTGTTGGTAGCCAATCCTTCATTGGCCCGCCTGGCTGTAAGGAATCGTAAGTTGGACAATT-GC---T-TTACCAAAT----G---C-------------------------------G---TGC--TTTTT------TG-TTAGTTTACGTAACTTGTT-----------------------------------------------------TTGCC---------TT-T---TCTT-TT---TTAAGTGGCTGGCTGGAACAAGGACTACAAGCCGGCTGCCTATCCAAAAACAGAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................CCGCCTGGCTGTAAGGAATCTGG..........................................................................................................................................................................................................................................................2311.00101000
.....................................................................................................................................................................................................................................................................................AGCCGGCTGCCTATCCAAAAACAGA.2511.00101000
...........................................................................................................................................................................................................................................................................AAGGACTACAAGCCGGCTGCCTATCC..........2611.00110000
..........................................................................................................................................................................................................................................................................CAAGGACTACAAGCCGGCTGCCT..............2311.00110000
...............................CGCCTGGCTGTAAGGAATCTG...........................................................................................................................................................................................................................................................2111.00101000
............................................................................................................................................................................................................................................................................AGGACTACAAGCCGGCTGCCTATC...........2411.00101000
..................................................................................................................................................................................................................................................................GGCTGGAACAAGGACTACA..........................1911.00101000
...............CAATCCTTCATTGGCCCGCCT...........................................................................................................................................................................................................................................................................2111.00101000
....................................................................................................................................................................................................................................................................CTGGAACAAGGACTACAAGCCGGCT..................2511.00100010
.........................TTGGCCCGCCTGGCTGTAAGGAATC.............................................................................................................................................................................................................................................................2511.00101000
............................................................................................................................................................................................................................................................................AGGACTACAAGCCGGCTGCCTATCCA.........2611.00101000
.........................TTGGCCCGCCTGGCTGTAAGGAA...............................................................................................................................................................................................................................................................2311.00101000
.....................................................................................................................................................................................................................................................................TGGAACAAGGACTACAAGCCGGC...................2311.00100010
...GGTGTTGGTAGCCAATCCTT........................................................................................................................................................................................................................................................................................2011.00101000
..........................................................................................................................................................................................................................................................................CAAGGACTACAAGCCGGCTGCCTATCC..........2711.00101000
..............................................................................................................................................................................................................................................................................GACTACAAGCCGGCTGCCTATCCA.........2411.00101000
.................ATCCTTCATTGGCCCGCCTGGCT.......................................................................................................................................................................................................................................................................2311.00100010
............................................................................................................................................................................................................................................................................AGGACTACAAGCCGGCTGCCTATCC..........2511.00110000
.........................................................................................................................................................................................................................................................................ACAAGGACTACAAGCCGGC...................1911.00100010
.............................................................................................................................................................................................................................................................TGGCTGGCTGGAACAAGGA...............................1911.00100010
....................................................................................................................................................................................................................................................................CTGGAACAAGGACTACAAGCCGGCTGC................2711.00100010
..................................................................................................................................................................................................................................................................GGCTGGAACAAGGACTACAAG........................2111.00100100
.........................TTGGCCCGCCTGGCTGTA....................................................................................................................................................................................................................................................................1811.00110000
.....................................................................................................................................................................................................................................................................................AGCCGGCTGCCTATCCAAAAACA...2311.00101000
..................................CTGGCTGTAAGGAATCTG...........................................................................................................................................................................................................................................................1840.25100010
dp5
GAAATTGTGTGTGGCCAATCCTGCTCTGGCCAGCCAGGTGGTTCGCAGCAGTAAGTTTTCCGTGG-GCCGATA------------------AA-----------TATGACCATCTGTGGGTTC----GG--CATTC------TGTTTTGTTTACGTAACGTTAGAA-TGCT--------------GTA--AAAG--ACTACAGC------CTTATATCCGTT---------CT-------CA--TTGCATTAGTGGCTGGATGGAACAAGGACTACAAGCCAGCCCCCTTCCCAAAGACAGAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................CTGCTCTGGCCAGCCAGGTG.......................................................................................................................................................................................................................................................................2012.0020200000000
.............................................................................................................................................................................................................................................................TGGCTGGATGGAACAAGGACTACAA.........................2512.0020000000020
......GTGTGTGGCCAATCCTGCTCTGG..................................................................................................................................................................................................................................................................................2311.0010000000010
.......................................................................................................................................................................................................................................................................GAACAAGGACTACAAGCCAGCCCCCTT.............2711.0010100000000
...ATTGTGTGTGGCCAATCCTGCTC.....................................................................................................................................................................................................................................................................................2311.0010100000000
.....................................................................................................................................................................................................................................................................TGGAACAAGGACTACAAGCCAGCCC.................2511.0010100000000
......GTGTGTGGCCAATCCTGCTCTGGC.................................................................................................................................................................................................................................................................................2411.0010100000000
..........................TGGCCAGCCAGGTGGTTCGCA................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................TGGCTGGATGGAACAAGGAC..............................2011.0010100000000
..............CCAATCCTGCTCTGGCCAGC.............................................................................................................................................................................................................................................................................2011.0010010000000
..AATTGTGTGTGGCCAATCCTGCT......................................................................................................................................................................................................................................................................................2311.0010100000000
..................................................................................................................................................................................................................................................................GGATGGAACAAGGACTACAAGCCA.....................2411.0010100000000
..........................TGGCCAGCCAGGTGGTTCGCAGC..............................................................................................................................................................................................................................................................2311.0010100000000
..............CCAATCCTGCTCTGGCCAGCCA...........................................................................................................................................................................................................................................................................2211.0010100000000
.............................................................................................................................................................................................................................................................TGGCTGGATGGAACAAGGACTACA..........................2411.0010000000010
.....................................................................................................................................................................................................................................................................TGGAACAAGGACTACAAGCCAGCCCCCT..............2811.0010100000000
.........................CTGGCCAGCCAGGTGGTTCG..................................................................................................................................................................................................................................................................2011.0010100000000
...ATTGTGTGTGGCCAATCC..........................................................................................................................................................................................................................................................................................1811.0010001000000
..........................................................................................................................................................................................................................................................................CAAGGACTACAAGCCAGCCCCCC..............2311.0010001000000
........................................................................................................................................................................................................................................................................AACAAGGACTACAAGCCAGCCC.................2211.0010100000000
..........................................................................................................................................................................................................................................................................CAAGGACTACAAGCCAGCCCCCT..............2311.0010100000000
.....................TGCTCTGGCCAGCCAGGTG.......................................................................................................................................................................................................................................................................1911.0010100000000
........GTGTGGCCAATCCTGCTCTGGCCAGC.............................................................................................................................................................................................................................................................................2611.0010100000000
......................GCTCTGGCCAGCCAGGTGGTTCGCA................................................................................................................................................................................................................................................................2511.0010100000000
...................CCTGCTCTGGCCAGCCAGGT........................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................GACTACAAGCCAGCCCCCT..............1911.0010100000000
..............................CAGCCAGGTGGTTCGCAGC..............................................................................................................................................................................................................................................................1911.0010100000000
droPer2
GAAATTGTGTGTGGCCAATCCTGCTCTGGCCAGCCAGGTGGTTCGCAGCAGTAAGTTTTCCGTGG-GCCGATA------------------AA-----------TATGACCATCTGTGGGTTC----GG--CATTC------TGTTTTGTTTACGTAACGTTTGAA-TGGT--------------GTA--AAAG--ACTACAAC------CTTATATCCGTT---------CT-------CA--TTGCATTAGTGGCTGGATGGAACAAGGACTACAAGCCAGCCCCCTTCCCAAAGACAGAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................GCTGGATGGAACAAGGACT.............................1913.003000003
...............................................................................................................................................................................................................................................................GCTGGATGGAACAAGGACTA............................2011.001000001
.........................................................................................................................................................................................................................................................................ACAAGGACTACAAGCCAGCCCC................2211.001010000
......GTGTGTGGCCAATCCTGCTCTGGCC................................................................................................................................................................................................................................................................................2511.001010000
..................................................................................................................................................................................................................................................................GGATGGAACAAGGACTACA..........................1911.001100000
...............................................................................................................................................................................................................................................................................ACTACAAGCCAGCCCCCTTCCC..........2211.001100000
............................................................................................................................................................................................................................................................................AGGACTACAAGCCAGCCCCCTTCCCAA........2711.001010000
droAna3
AAAGCTATGCGCCGCCAATCCTGCTCTTGCCCGCCAGGCGGTGCGCAGCAGTAAGTAATCC-----CC---C-TTACCGGA----GG---CA-TCCCT--G---------------------------------CA------TGTTTTGTTTACGTAACATG--GA-TGCT--------------AAG--AGA---GCTA-ATA------T------TCGTT---------G-TT---T-CT--T---TGTAGTGGCCGGGTGGAACAAGGACTTCAAGCCAGCACCGTTCCCCAAGACGGAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............GCCAATCCTGCTCTTGCCCGCCAGGC........................................................................................................................................................................................................................................................................2612.002200000
...........................................................................................................................................................................................................................................................................AAGGACTTCAAGCCAGCACCGTTCCCCA........2812.002200000
...............................................................................................................................................................................................................................................................GCCGGGTGGAACAAGGACTT............................2011.001100000
.............................................................................................................................................................................................................................................................TGGCCGGGTGGAACAAGGACTTCAAG........................2611.001100000
..............................................................................................................................................................................................................................................................GGCCGGGTGGAACAAGGACT.............................2011.001100000
............................GCCCGCCAGGCGGTGCGCAGC..............................................................................................................................................................................................................................................................2111.001100000
.................ATCCTGCTCTTGCCCGCCAGGCGGTGCGC.................................................................................................................................................................................................................................................................2911.001010000
.........................................................................................................................................................................................................................................................................ACAAGGACTTCAAGCCAGCACC................2211.001010000
.............................................................................................................................................................................................................................................................TGGCCGGGTGGAACAAGGACTTCAAGCC......................2811.001100000
..................................................................................................................................................................................................................................................................GGGTGGAACAAGGACTTCA..........................1911.001100000
...............CAATCCTGCTCTTGCCCGCCAGGCGGT.....................................................................................................................................................................................................................................................................2711.001010000
...............................................................................................................................................................................................................................................................GCCGGGTGGAACAAGGACTTCAAGC.......................2511.001000010
..............................................................................................................................................................................................................................................................GGCCGGGTGGAACAAGGACTT............................2111.001000010
...............CAATCCTGCTCTTGCCCGCCAGGC........................................................................................................................................................................................................................................................................2411.001010000
...GCTATGCGCCGCCAATCCTGC.......................................................................................................................................................................................................................................................................................2111.001100000
...........................................................................................................................................................................................................................................................................AAGGACTTCAAGCCAGCACCGTTCC...........2511.001100000
.....TATGCGCCGCCAATCCTGCT......................................................................................................................................................................................................................................................................................2011.001010000
.......TGCGCCGCCAATCCTGCTCTTGCCCG..............................................................................................................................................................................................................................................................................2611.001100000
................................................................................................................................................................................................................................................................................CTTCAAGCCAGCACCGTTCCC..........2111.001010000
.....................................................................................................................................................................................................................................................................TGGAACAAGGACTTCAAG........................1811.001100000
........................................................................................................................................................................................................................................................................AACAAGGACTTCAAGCCAGCA..................2111.001100000
.......................................................................................................................................................................................................................................................................GAACAAGGACTTCAAGCCAGCACCGTT.............2711.001010000
..................TCCTGCTCTTGCCCGCCAGGCGGTGC...................................................................................................................................................................................................................................................................2611.001010000
.............................................................................................................................................................................................................................................................TGGCCGGGTGGAACAAGGAC..............................2011.001100000
..............................................................................................................................................................................................................................................................GGCCGGGTGGAACAAGGACTTCAA.........................2411.001100000
.................................................................................................................................................................................................................................................................................TTCAAGCCAGCACCGTTCCCCA........2211.001100000
......................................................................................................................................................................................................................................................................GGAACAAGGACTTCAAGCCAGCACC................2511.001010000
...................CCTGCTCTTGCCCGCCAGG.........................................................................................................................................................................................................................................................................1911.001100000
.............................................................................................................................................................................................................................................................................GGACTTCAAGCCAGCACCGTTCCCC.........2511.001100000
......................GCTCTTGCCCGCCAGGCGGT.....................................................................................................................................................................................................................................................................2011.001100000
..............................................................................................................................................................................................................................................................................GACTTCAAGCCAGCACCGTTCC...........2211.001100000
.................ATCCTGCTCTTGCCCGCCAGGC........................................................................................................................................................................................................................................................................2211.001100000
............CGCCAATCCTGCTCTTGCCCGCCA...........................................................................................................................................................................................................................................................................2411.001100000
..............................................................................................................................................................................................................................................................GGCCGGGTGGAACAAGGAC..............................1911.001010000
............................................................................................................................................................................................................................................................................AGGACTTCAAGCCAGCACCGTTCCCCAA.......2811.001100000
..AGCTATGCGCCGCCAATCC..........................................................................................................................................................................................................................................................................................1911.001000100
..............................................................................................................................................................................................................................................................................GACTTCAAGCCAGCACCGTT.............2011.001100000
............CGCCAATCCTGCTCTTGCCCGCCAGGC........................................................................................................................................................................................................................................................................2711.001010000
........................................................................................................................................................................................................................................................................AACAAGGACTTCAAGCCAGCACCGTTCCC..........2911.001100000
.............................................................................................................................................................................................................................................................................GGACTTCAAGCCAGCACCGTTCCCCA........2611.001100000
.......TGCGCCGCCAATCCTGCTCTTGCCCGCC............................................................................................................................................................................................................................................................................2811.001100000
droBip1
AAAGCTATGCGCCGCCAATCCTGCCCTGGCACGCCAGGCGGTGCGCAGCAGTAAGTAATCC-----CC---A-TAACCGGAC----A---CA-TCGA-----------------------------------TGCA------TGTTTTGTTTACGTAACATTGAT---GCT----------------A--AGAG--ACCCAATA------T------TCGTT---------A-AT---T-CG--T---TACAGTGGCCGGCTGGAACAAGGACTTTAAGCCAGCACCATTCCCCAAGACGGAGSizeHit CountTotal NormTotal
No Reads
droKik1
GAAGCTTTGCTCCGCCAATCCAGCCTTGGCCCGCCAGGCGGTGCGCAGCAGTAAGTATCGCCATA-GCCCCCTTAACCG-----------------------------AGCCCGAGAAGGCCC----GCTTTATGCT-----GTTTTTGTTTACGTAACTTTGAAT-CGTTTCTTGTTTCCCCCTGCG--ATT---GCTTCACCT------------GCCTT---------C-TG---C-C--TG---GACAGTGGCTGGTTGGAACAAGGACTTTAAGCCCGCCCCCTATCCCAAGACGGAGSizeHit CountTotal NormTotal
No Reads
droFic1
AAAGCTATGCGCCGCAAATCCCGTCGTGGCTCGCCAGGCGGTACGCAGCAGTAAGTGCAGTCT-G-GCCATC-AAACCAGGAGCTGG-----------------------------------------A--GAGCC------TGTTTTGTTTACGTAACTATTGAC-AGTA--------------CTC--A-----GATTCAAC------A------TTGTT---------T-TT---C-CC--G---TATAGTGGCCGGCTGGAACAAGGACTACAAGCCGGCACCCTATCCACAAACGGAASizeHit CountTotal NormTotal
No Reads
droEle1
AAAGCTATGCGCCGCCAATCCCGCCGTGGTTCGCCAGGCGGTGCGCAGCAGTAAGTGAAAAACCG-GCAGA-------G----CTGGGGAAA-TCCGT--AGAAC-----------------C---TGC--GCCTC------TGTTTTGTTTACGTAACTTTTGAG-TGTA--------------CGC--A-----GTCCTAAA------C------TAGTT---------TC-CCTCCTCG------TTTAGTGGCTGGCTGGAACAAGGACTACAAGCCGGCACCCTTTCCACAAACGGAGSizeHit CountTotal NormTotal
No Reads
droRho1
AAAGCTATGCGCCGCCAATCCCGCCATGATTCGCCAGGCGGTACGCGGCAGTAAGTGAAAATCCG-GAAGA-------G----CAGG---AA-TCCCG--ACAAC-----------------C---TGC--GCCTC------TGTTTTGTTTACGTAACTTTTGTT-CT------------------C--T-----GTCTAAAA------C------TAGTT---------T-TT---C-CC--G---TTTAGTGGCTGGCTGGAACAAGGACTATAAGCCGGCACCCTTTCCACAGACGGAGSizeHit CountTotal NormTotal
No Reads
droBia1
AAAGCTGTGCGCCGCCCATCCCGCCGTGGCTCGCCAGGCGATCCGCAGCAGTAAGTGCCGAGGCG-GAGGA-------G----CAGG---AA-TCCGG--CGAAT-----------------G---TGC--CCCTCTGTTTACCTCTTGTTTACGTAACTTTGGCC-TGGG--------------CCG--A-----GCTAAGAA------C------TCGTT---------T-TC---C-CA--T---TCTAGTGGCTGGCTGGAACAAGGACTTCAAGCCGGCACCCTATCCACAGACGGAGSizeHit CountTotal NormTotal
No Reads
droTak1
AAAGCTGTGCGCCGCCAATCCCGCCGTGGCTCGCCAGGCGGTCAGGAGCAGTAAGTGGCAGTGGGGGTGAA-------G----C-------CA-----------GGTGACCAGCAAT-----CCGGTGC--TCCCC------TGTTTTGTTTACGTAACTTTTGTA-TGCA--------------GACTAAAAGAAGCTAATAA------C------CCGAT----------TTT---C-CC--C---TTTAGTGGCTGGCTGGAACAAGGACTACAAGCCGGCGCCCTATCCGCAGACGGAGSizeHit CountTotal NormTotal
No Reads
droEug1
AAAGCTATGCGCTGCCAATCCTGCCGTGACTCGCCAGGCCCTCCGGAGCAGTAAGTGAAAATTGG-GCAGA-------A----GAGG---AA-ACGCG--AGAAC-----------------C---TCT--ACATA------TGTTTTGTTTACGTAACTTTTTGG-CGTA--------------CCA--A-----GCTTAAAA------C------TTGTT---------TT-TTTTTTCG------TTTAGTGGCCGGCTGGAACAAGGACTTCAAGCCAGGTCCTTATCCACAAACAGAGSizeHit CountTotal NormTotal
No Reads
dm3
AAAGCTGTGCGCCGCCAATCCCGTCGTGGCTCGCCAGGCGATCCGCAGCAGTAAGTGTGAATCGGGGCTGC-------G----CTGG---CA-ACAGT--GCAAC-----------------C---TGC--CCCAC------TGTTTTGTTTACGTAACTTTTGCA-TGCA--------------CCG--AATG--GCTACAAA------T------TCGAATTTCTCGCCAT-T---TACG--T---TTTAGTGGCTGGCTGGAATAAGGACTACAAGCCGGGTCCGTATCCACAGACGGAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....TGTGCGCCGCCAATCCCGTCGTGGC.................................................................................................................................................................................................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................................................................................................................................................................................................................................GACTACAAGCCGGGTCCGT..............1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....................CGTCGTGGCTCGCCAGGCG.......................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................GACTACAAGCCGGGTCCG...............1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AATCCCGTCGTGGCTCGCC............................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................AGCCGGGTCCGTATCCACA.......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GCTGTGCGCCGCCAATCC..........................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AGCTGTGCGCCGCCAATCC..........................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................GACTACAAGCCGGGTCCGTA.............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AATCCCGTCGTGGCTCGCCAGGC........................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................AAGCCGGGTCCGTATCCACA.......2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AAAGCTGTGCGCCGCCAA.............................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CGCCAGGCGATCCGCAGCATGG..........................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TGCGCCGCCAATCCCGTCGTGGCTCG..............................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................................TGGCTGGCTGGAATAAGGAC..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......GTGCGCCGCCAATCCCGTCGT....................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.AAGCTGTGCGCCGCCAATCCCG........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GCAGTAAGTGTGAATCGGGGCTG.........................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
AAAGCTGTGCGCCGCCAATCCC.........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TGG---CA-ACAGT--GCAAC-----------------C---TG...............................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GGCTCGCCAGGCGATCCGCAGCA.............................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CGTGGCTCGCCAGGCGATCCGCA................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ATCCCGTCGTGGCTCGCCAGGCGATCCGCA................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........GCCGCCAATCCCGTCGTG...................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................CGCCAGGCGATCCGCAGCAT............................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................GACTACAAGCCGGGTCCGTAT............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TGGCTCGCCAGGCGATCCGCA................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TCCCGTCGTGGCTCGCCAGGCGATCCGC.................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CGTCGTGGCTCGCCAGGCGATC....................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGTGCGCCGCCAATCCCGTCGTGGCT................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AAGCTGTGCGCCGCCAATCCCGT.......................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CGCCAGGCGATCCGCAGCA.............................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TCGCCAGGCGATCCGCAGCA.............................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CGCCAATCCCGTCGTGGCTCGCC............................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GCTGTGCGCCGCCAATCCCGTC......................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AGCTGTGCGCCGCCAATCCC.........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGTGCGCCGCCAATCCCGT.......................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TCCCGTCGTGGCTCGCCAGGCGATCC...................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................................................................................................................................................................................................AGCCGGGTCCGTATCCAC........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TACAAGCCGGGTCCGTATCCACAGA.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GCTCGCCAGGCGATCCGCAGCA.............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CGTCGTGGCTCGCCAGGC........................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................CCGGGTCCGTATCCACAGACGG..2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AAAGCTGTGCGCCGCCAATCCCGTCGTGGCTCGCCAGGCGATCCGCAGCAGTAAGTGTGAATCGGGGCTGT-------G----CTGG---CA-ACCGT--GCAAC-----------------C---TGC--CCCAC------TGTTTTGTTTACGTAACTTTTGCA-TACA--------------CCG--AATG--GCTACAAA------C------TCGCC---------AT-T---TCTG--T---TCTAGTGGCTGGCTGGAACAAGGACTACAAGCCGGGTCCGTATCCACAGACGGAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................TGGCTGGAACAAGGACTACAAGCA......................2412.00200000000000020000
.............................................................................................................................................................................................................................................................TGGCTGGCTGGAACAAGGACTACAAGC.......................2711.00100000010000000000
.................................................................................................................................................................................................................................................................TGGCTGGAACAAGGACTACAAGCCGG....................2611.00100000000000010000
......................................................................................................................................................................................................................................................................GGAACAAGGACTACAAGC.......................1811.00110000000000000000
..............................................................CGGGGCTGT-------G----CTGG---CA-AC................................................................................................................................................................................................................1811.00110000000000000000
.............................................................................................................................................................................................................................................................TGGCTGGCTGGAACAAGGACTACAAGCC......................2811.00100000000100000000
.................................................................................................................................................................................................................................................................................TACAAGCCGGGTCCGTATCCACAGA.....2511.00100000000010000000
droSec2
AAAGCTGTGCGCCGCCAATCCCGCCGTGGCTCGCCAGGCGATCCGCAGCAGTAAGTGTGAATCGGGGCTGC-------G----CTGG---CA-ACCGT--GCAAC-----------------C---TGC--CCCAC------TGTTTTGTTTACGTAACTTTTGCA-TGCA--------------CCG--AATG--GCTACAAA------C------TCGCC---------AT-T---TCCG--T---TCTAGTGGCTGGCTGGAACAAGGACTACAAGCCGGGTCCGTATCCACAGACGGAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....CTGTGCGCCGCCAATCCCGCCGT....................................................................................................................................................................................................................................................................................2311.0010010
..............................................................................................................................................................................................................................................................GGCTGGCTGGAACAAGGA...............................1811.0010100
...............................................................................................................................................................................................................................................................................ACTACAAGCCGGGTCCGTATC...........2111.0010100
.........................................................................................................................................................................................................................................................................ACAAGGACTACAAGCCGG....................1811.0010010
.................................................................................................................................................................................................................................................................................TACAAGCCGGGTCCGTAT............1811.0010010
................................................................................................................................................................................................................................................................................CTACAAGCCGGGTCCGTAT............1911.0010010
.......................................................................................................................................................................................................................................................................................CCGGGTCCGTATCCACAGA.....1911.0011000
.............................................................................................................................................................................................................................................................TGGCTGGCTGGAACAAGGACT.............................2111.0010100
...GCTGTGCGCCGCCAATCCCGCCGTGGCT................................................................................................................................................................................................................................................................................2811.0010010
..............................TCGCCAGGCGATCCGCAGCATG...........................................................................................................................................................................................................................................................2211.0010010
..............................................................................................................................................................................................................................................................................GACTACAAGCCGGGTCCGTATCC..........2311.0011000
droYak3
AAAGCTGTGCGCCGCCAATCCCGCCGTGGCACGCCAGGCGATCCGCAGCAGTAAGTGGAGATCCG-GATGC-------G----CTGG---CA-TCCGCAGGCAAC-----------------C---TGC--TCCTC------TGTTTTGTTTACGTAACTTTTGCA-TGCA--------------CCG--AAT---GCTACAAA---CA-C------TCGCC---------TT-T---TCCG--T---TTCAGTGGCTGGCTGGAACAAAGACTACAAGCCGGGTCCGTATCCACAGACGGAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................AATCCCGCCGTGGCACGCCAGGCG.......................................................................................................................................................................................................................................................................2412.00202000000000
...............................................................................................................................................................................................................................................................GCTGGCTGGAACAAAGACTACAAGCC......................2611.00101000000000
..........GCCGCCAATCCCGCCGTGGCAC...............................................................................................................................................................................................................................................................................2211.00101000000000
.................................................................................................................................................................................................................................................................................TACAAGCCGGGTCCGTATCCAC........2211.00100000010000
.................................................................................................................................................................................................................................................................................TACAAGCCGGGTCCGTATC...........1911.00101000000000
.....................CGCCGTGGCACGCCAGGCGATCCGCAGC..............................................................................................................................................................................................................................................................2811.00100100000000
.........................GTGGCACGCCAGGCGATCCGCA................................................................................................................................................................................................................................................................2211.00101000000000
.............................................................................................................................................................................................................................................................................AGACTACAAGCCGGGTCC................1811.00101000000000
droEre2
AAAGCTGTGCGCCGCCAATCCTGCCGTGGCTCGCCAGGCGATCCGCAGCAGTAAGTGGAGATCCG-GATGC-------G----CTGG---CA-TCTGT--GCATT-----------------C--GTGC--TCCTC------TGTTTTGTTTACGTAACTTTTGCA-TGTA--------------CCG--AAT---GCTACAAA------C------TCGCC---------TT-T---TTCG--T---TTTAGTGGCTGGCTGGAACAAAGACTACAAGCCGGGACCGTATCCACAGACGGAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................TGGAACAAAGACTACAAGCCGGGACCGTA.............2913.0030000003
......GTGCGCCGCCAATCCTGCCGTGGC.................................................................................................................................................................................................................................................................................2412.0020002000
..AGCTGTGCGCCGCCAATCCTGC.......................................................................................................................................................................................................................................................................................2211.0010000010
...GCTGTGCGCCGCCAATCCTGCCGTGGCT................................................................................................................................................................................................................................................................................2811.0011000000
......GTGCGCCGCCAATCCTGCC......................................................................................................................................................................................................................................................................................1911.0010000010
.....................................................................................................................................................................................................................................................................................AGCCGGGACCGTATCCACAGACGGA.2511.0011000000
...........................................................................................................................................................................................................................................................................AAAGACTACAAGCCGGGACC................2011.0010100000
....................................................................................................................................................................................................................................................................................AAGCCGGGACCGTATCCACAGA.....2211.0010001000
...........................................................................................................................................................................................................................................................................AAAGACTACAAGCCGGGACCGT..............2211.0010001000
......GTGCGCCGCCAATCCTGCCGTGGCT................................................................................................................................................................................................................................................................................2511.0011000000
..................................................................................................................................................................................................................................................................GGCTGGAACAAAGACTACAAGCC......................2311.0011000000
............................................................................................................................................................................................................................................................................AAGACTACAAGCCGGGACCGTAT............2311.0011000000
............CGCCAATCCTGCCGTGGC.................................................................................................................................................................................................................................................................................1811.0011000000
............CGCCAATCCTGCCGTGGCT................................................................................................................................................................................................................................................................................1911.0011000000
...............................................................................................................................................................................................................................................................................ACTACAAGCCGGGACCGTATCC..........2211.0011000000
AAAGCTGTGCGCCGCCAATCCTGCC......................................................................................................................................................................................................................................................................................2511.0011000000
.....................................................................................................................................................................................................................................................................................AGCCGGGACCGTATCCACA.......1911.0011000000
....CTGTGCGCCGCCAATCCTGCCGTG...................................................................................................................................................................................................................................................................................2411.0010010000
........GCGCCGCCAATCCTGCCGTGGCT................................................................................................................................................................................................................................................................................2311.0011000000
..................................................................................................................................................................................................................................................................................ACAAGCCGGGACCGTATC...........1811.0011000000
........................................................................................................................................................................................................................................................................AACAAAGACTACAAGCCGGGACC................2311.0010000010
..............................................................................................................................................................................................................................................................................GACTACAAGCCGGGACCGTAT............2111.0010000100
....................................................................................................................................................................................................................................................................CTGGAACAAAGACTACAAGCC......................2111.0010100000
...........................................................................................................................................................................................................................................................................AAAGACTACAAGCCGGGAC.................1911.0010000100
......................GCCGTGGCTCGCCAGGCGATCC...................................................................................................................................................................................................................................................................2211.0011000000
AAAGCTGTGCGCCGCCAATCC..........................................................................................................................................................................................................................................................................................2111.0011000000
.............................................................................................................................................................................................................................................................................AGACTACAAGCCGGGACCGC..............2011.0010100000
................................GCCAGGCGATCCGCAGCAT............................................................................................................................................................................................................................................................1920.5011000000

Generated: 05/19/2015 at 03:21 PM