dvi_9038

Name	Class	Family	Strand
(GA)n	Simple_repeat	Simple_repeat	+

TAACCTTCTAACTTCGACCTTTTACCCTTTAGGGGGCAAAATTAAGTTTACGCTAAATGAACAGAGAAATCAAGGGCTTCAAAACATCTGTTTTGTCACATGTCACACCGTGTTTTCTCACTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTTAAGTGAGTTGTTGAACAACAATAAGAAGAACAGAAATGTCAACCTGAATTTTAGGTCGTGAACGCTGTTAAGGCTTTTATCGCTATTAAG ***************************************************************************************........((((........))))..................................................**************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060663 160_0-2h_embryos_total	V047 embryo	V116 male body	M027 male body	SRR060682 9x140_0-2h_embryos_total	SRR060674 9x140_ovaries_total	M047 female body
........................................................................................................................................................................TTGTTGAACAAGATTAAGAAG..............................................................	21	2	2	0.50	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................TTTTGGGACGTGAACGCTG.......................	19	2	4	0.25	1	0	1	0	0	0	0	0
...........................TTTTGGGGGCAAAAGTAA..............................................................................................................................................................................................................	18	2	7	0.14	1	0	0	1	0	0	0	0
.............................................................................................................................................................................................AACAGTAATGTCAACCTA............................................	18	2	9	0.11	1	0	0	0	1	0	0	0
.........................................................................................................................................................................TGTTGACCAACTATAAGAAAA.............................................................	21	3	10	0.10	1	0	0	0	0	1	0	0
...........................................................................CGTTCAAAACATCTGTTTT.............................................................................................................................................................	19	2	17	0.06	1	0	0	0	0	0	1	0
......................................................................................................................CACTCTCGCTCTCTCTCTCTCTC..............................................................................................................	23	0	19	0.05	1	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12928:5689360-5689610 +	dvi_9038	ATT-GGAAGATTGAAGCTG-----------------------------------------------------------------------------------------------------GAAA-ATGGGAAATCCCCCGTTTTAATTCAAATGCGATTTACTTGTCTCTTTAGTTCCCGAAGTTT--------TGTAGACA-AAAC---AGT--------------------GTA--------------------------C----A-------GTGTGGCA------CA-------AAAGAGT--G--A--GAGCGAG--AGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAATTCA---------------CTCA---ACAACTTGTTG----TTATTCTTCTT---GTCTTTACAGTTGGACTTAAAATCCAGCACTTGCGAC-------------------AATTCCGAAAATAGCGATAATTC
droMoj3	scaffold_6498:1213121-1213271 -		AA-GAAC-----GAAGCGG-----------------------------------------------------------------------------------------------------GAAATATAGGAGAACGGCTGC-----------------------------------------------------------T-CTGAAATGAGCGCGACAATTTTTATTATGGCTTTACATTGTTGCATCCCCCACA--GTGA-----GGT-------AGACAG------AG-------AGAGGGT--A--A--GAGTGAG--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA---------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15203:994357-994501 +		TTG-GAAA-ATCGA-----------------------------------------------------------------------------------------------------------------------------CTTATAGGTAA-ATAAAA--------------------------------AATCACCAGC-T-TTGAT---GCC---GCG---------TTCAA----CGCTGTTGAGTTTACAATTATATA----CAGAC----AGAGAGTAC------AT-------AAAGAAC--G--A--GAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGT---------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004768:2228798-2228931 -		A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGT--G--A--GAGAGAG--AACGAGATAGAGAGAGAGAGAGAGAGAGAGGCTTCA-----CAAA--T--CCCAGGGTAT---T-----------------------------TTAGT--TACTTACATTTT-GCATTTTCGGCAAGTTGTACTTCAATTTTCAATTATGAAAATAACAACAAT--
dp5	XL_group1e:6365732-6365894 -		TTT-GTTT-GT-------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTTTGGT----G--ATTTGTGATTTTTGAAG-G-CCAAG---GTC------------------GCACTGCAT------------------ATGG-----GA-TC--------ATA----A-TG--------AGAAGA--G--AAGAG--CAA--AGCGAGAGAAAGAGAGAGAGAGAGAGAGAGAAGCCA---------------GTCA---AAAAC-TGTTG----TTGTTGTTGTTGTTT---TT--GGTTGGG--------------------------------------------------------------TT
droPer2	scaffold_62:198794-198981 +		AA-AATG-------------------------------------------------------------------------------------------------------------------------AGGAGTTGT--TTTCCAATTCA-ATGGAATCTAGTTTTTTTTTCCACC--TG--ATTT--------TGCATATAAAAGT---ACC--------------------GGA--------------------------C----GGT-------AGGCCG------TTGGTGC--AAAGAGA--G--AGAGA--GAGAGAGAGAGAGTGATAGAGAGAGAAACAAAGAGATCTCA------------TATCTCA---AT---CGGCTG----ATGTTGCTCTCGCTG---TC--GCTCCGG--------------------------------------------------------------CT
droAna3	scaffold_13417:3901532-3901681 +		ATT-GAAAAATTGAGATTGACAAAAAAAACTGAAGATATGAAAAACAATT--------------TCAAAATC------------------------------------ATTT-----------------------------------------------------------------------------------------------G------TCGCATTTCTTCAAATAAAAGATAAT------------------AAGA-----GAC-------AGAGAG------A---------GAGAGA--GAGA--GAGAGAG--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGT---------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396641:1023335-1023430 -		TAT-TTCT------------------------------------------------------------------------------------------------------TT-----------------------------------------------------------------------------------------------A------TTTCTTTTGTTGAATTCAAATCACTT------------------ACAG-----GG-TT--------AAG----AGG---------AAGAGA--G--AGAGA--GAG--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA---------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302344:1878667-1878844 +		ATT-TAAAGCC-TTTATTTATATAACCAGTTGAGAATTTTAACCCCATTTGTATTCCCTTAATTTCTAGATCTTAAATTCTAGATCTAATATACCCCCAAATTTCCCC---TCAGTG-----------------------------------------------------------------------------------------T---AGC-------------------------------------------------AAGC-AAT-------GGGCTG------GA-------AAAAGGA--G--AGAGA--GAG--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA---------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000454073:2800153-2800227 +		AC-AAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---AGC--------------------G------------------------------------TTAAAATGTGCAA------CA-------AAAGAGA--G--A--GAGAGAG--AGACAGAGACAGAGAGAGAGAGAGCGGGAAAAT-------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491214:5052089-5052238 +		GT-GTGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGC-GTC----------GCG------CG-------AAAAGAC--G--A--GAGCGAG--AGAAAGAGAGAGAGAGAGAGAGAGAGTGAAATTTGAACTTGGAAATTT--TCTAGGAAAT---CAACTGATAATTATATACCTT---ATACTAATAGTTGCATTCACAATAC-GTATTTCCGAC-----------------------------------------A
droBia1	scf7180000302025:47610-47678 -		AA-ATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------GTAAATCAAGCA-----AGAGAGAGA--G--A--GAGAGAG--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGA--------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415195:60328-60390 +		TTC-TCTT-AA-------------------------------GAAC-----------------------------------------------------------------T-----------------------------------------------------------------------------------------------T------TTTCATTCTTTCTTTTCAGTCTACTT------------------AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGAAAACAGCTTTGGCTC
dm3	chr3L:13622647-13622725 +		CC-GAAG---------TTG-----------------------------------------------------------------------------------------------GTGCAGAAAA---------------------------------------------------------------------------------------------------------------------------------------------TAGAG-------GGGGAG------CG-------AGAGAGA--G--AGAGA--GAG--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA---------------------------------------------------------------------------------------------------------------------------------------
droSim2	x:15180411-15180462 -		A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGA----GAGA--GA--GAGAGAGAGAGAGAGAGAGAGGGAGAGGGAGAGAGAAGTCA----------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_4:3110535-3110629 +		AA-ACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC---ACC--------------------GAA--------------------------C----A------AAATAGCAA------AT-------AAAAAGAGAG--AATGA--GAG--AGAGAGAGAGAGAGAGAGGGGGATGGAGAGA--GCC---------------CCAA---CCAACTAGTTG-------------------------------------------------------------------------------------------------
droYak3	X:15885012-15885092 +		TTT-GCCA-AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-AATT---TGT--------------------GAA--------------------------AAGC-GTC-------GG-GCA------TT-------CAAGAGA--G--AGAGA--GAG--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA---------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4644:558486-558538 -		G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA------GA-------AATGAGA--G--AGAGA--GAG--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA---------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

ATT-GGAAGATTGAAGCTG-----------------------------------------------------------------------------------------------------GAAA-ATGGGAAATCCCCCGTTTTAATTCAAATGCGATTTACTTGTCTCTTTAGTTCCCGAAGTTT--------TGTAGACA-AAAC---AGT--------------------GTA--------------------------C----A-------GTGTGGCA------CA-------AAAGAGT--G--A--GAGCGAG--AGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAATTCA---------------CTCA---ACAACTTGTTG----TTATTCTTCTT---GTCTTTACAGTTGGACTTAAAATCCAGCACTTGCGAC-------------------AATTCCGAAAATAGCGATAATTC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................................................................................................................................................................ACA-AAAC---AGT--------------------GTA--------------------------C----A-------GTG..................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................GAGAGAGGGAGAGAGAAT.....................................................................................................................................	18	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GAGT--G--A--GAGCGAG--AGAGAGAGAGA...........................................................................................................................................................	24	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................AGAGAGAGAGAGAGAGAGGGA.............................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................G--AGAGAGAGAGAGAGAGAGAGAG................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................AGAGAGAGAGAGAGAGAGAGGGAGAG..........................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AG--AGAGAGAGAGAGAGAGAGAGAG................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................CGAG--AGAGAGAGAGAGAGAGAGAGA.................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................GAGAGAGAGAGAGAGAGAGAGGGA.............................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................G--AGAGAGAGAGAGAGAGAGAGAGGGA.............................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AA-GAAC-----GAAGCGG-----------------------------------------------------------------------------------------------------GAAATATAGGAGAACGGCTGC-----------------------------------------------------------T-CTGAAATGAGCGCGACAATTTTTATTATGGCTTTACATTGTTGCATCCCCCACA--GTGA-----GGT-------AGACAG------AG-------AGAGGGT--A--A--GAGTGAG--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA---------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............................................................................................................................................................................................................................................................................................................GT--A--A--GAGTGAG--AGAGAGAGA.............................................................................................................................................................	20	17	0.06	1	0	0	0	0	1	0

droGri2

TTG-GAAA-ATCGA-----------------------------------------------------------------------------------------------------------------------------CTTATAGGTAA-ATAAAA--------------------------------AATCACCAGC-T-TTGAT---GCC---GCG---------TTCAA----CGCTGTTGAGTTTACAATTATATA----CAGAC----AGAGAGTAC------AT-------AAAGAAC--G--A--GAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGT---------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...............................................................................................................................................................................................................................................................................................................AC--G--A--GAGCGAGAGAGAGAG................................................................................................................................................................	19	5	0.20	1	0	1

droWil2

A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGT--G--A--GAGAGAG--AACGAGATAGAGAGAGAGAGAGAGAGAGAGGCTTCA-----CAAA--T--CCCAGGGTAT---T-----------------------------TTAGT--TACTTACATTTT-GCATTTTCGGCAAGTTGTACTTCAATTTTCAATTATGAAAATAACAACAAT--	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTACATTTT-GCATTTTCGGCAAGT......................................	27	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCGGCAAGTTGTACT................................	18	1	1.00	1	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GAGAGAGAGAGAGAGAGAGGCTTCA-----.............................................................................................................................	25	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................G--AACGAGATAGAGAGAGA.....................................................................................................................................................	18	3	0.33	1	0	0	0	1	0

dp5

TTT-GTTT-GT-------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTTTGGT----G--ATTTGTGATTTTTGAAG-G-CCAAG---GTC------------------GCACTGCAT------------------ATGG-----GA-TC--------ATA----A-TG--------AGAAGA--G--AAGAG--CAA--AGCGAGAGAAAGAGAGAGAGAGAGAGAGAGAAGCCA---------------GTCA---AAAAC-TGTTG----TTGTTGTTGTTGTTT---TT--GGTTGGG--------------------------------------------------------------TT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.TT-GTTT-GT-------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTTTGG..........................................................................................................................................................................................................................................................................................................................	20	4	0.75	3	0	0	0	0	2	0	0	0	1	0
.TT-GTTT-GT-------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTTTGGT----.....................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	1	0	0	0	0	0
..T-GTTT-GT-------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTTTGG..........................................................................................................................................................................................................................................................................................................................	19	6	0.17	1	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................CGAGAGAAAGAGAGAGAGAGA...............................................................................................................................................	21	10	0.10	1	0	1	0	0	0	0	0	0	0	0

droPer2

AA-AATG-------------------------------------------------------------------------------------------------------------------------AGGAGTTGT--TTTCCAATTCA-ATGGAATCTAGTTTTTTTTTCCACC--TG--ATTT--------TGCATATAAAAGT---ACC--------------------GGA--------------------------C----GGT-------AGGCCG------TTGGTGC--AAAGAGA--G--AGAGA--GAGAGAGAGAGAGTGATAGAGAGAGAAACAAAGAGATCTCA------------TATCTCA---AT---CGGCTG----ATGTTGCTCTCGCTG---TC--GCTCCGG--------------------------------------------------------------CT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................................TAGTTTTTTTTTCCACC--TG--ATTT--------TGCATA................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................TTCA-ATGGAATCTAGTTTTTT................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................C--AAAGAGA--G--AGAGA--GAGAGA.....................................................................................................................................................................	20	20	0.40	8	0	0	0	0	0	8
....................................................................................................................................................................................................................................................................................................GTGC--AAAGAGA--G--AGAGA--GA.........................................................................................................................................................................	19	6	0.17	1	0	0	0	0	0	1

droAna3

ATT-GAAAAATTGAGATTGACAAAAAAAACTGAAGATATGAAAAACAATT--------------TCAAAATC------------------------------------ATTT-----------------------------------------------------------------------------------------------G------TCGCATTTCTTCAAATAAAAGATAAT------------------AAGA-----GAC-------AGAGAG------A---------GAGAGA--GAGA--GAGAGAG--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGT---------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................................................................................................................................................................................................................................C-------AGAGAG------A---------GAGAGA--GAGA--GA.............................................................................................................................................................................	20	20	0.10	2	0	0	0	0	2	0
..........................................................................................................................................................................................................................................GATAAT------------------AAGA-----GAC-------AGAGAG------A---------G............................................................................................................................................................................................	21	14	0.07	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................AGAGAGAGAGAGAGAGAG..................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................A--GAGA--GAGAGAG--AGAGAGAG..............................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................GA--GAGA--GAGAGAG--AGAGAGAGA.............................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................AGA-----GAC-------AGAGAG------A---------GAGAGA--G....................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................AGAGAGAGAGAGAGAGAG................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................AGAGAGAGAGAGAGAGAG........................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................AGAGAGAGAGAGAGAGAG....................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................AGAGAGAGAGAGAGAGAG............................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................GAC-------AGAGAG------A---------GAGAGA--GAGA--...............................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................AGAGAG------A---------GAGAGA--GAGA--GAGA...........................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................GAGA--GAGAGAG--AGAGAGAGAGAG..........................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................AGAGAGAGAGAGAGAGAG..............................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................AGA--GAGA--GAGAGAG--AGAGA.................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................GAG--AGAGAGAGAGAGAGAGAGAG..................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................GA--GAGAGAG--AGAGAGAGAGAGAG........................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................AGA-----GAC-------AGAGAG------A---------GAGAGA--.....................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................AGAGAGAGAGAGAGAGAG..........................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................GAC-------AGAGAG------A---------GAGAGA--GAGA--GA.............................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................AAGA-----GAC-------AGAGAG------A---------GAGA.........................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................GAGAG--AGAGAGAGAGAGAGAGAG....................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................GAGAGAG--AGAGAGAGAGAGAGAG......................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GAGA--GAGA--GAGAGAG--AGAGAGA...............................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................GA-----GAC-------AGAGAG------A---------GAGAGA--G....................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................GAGAG------A---------GAGAGA--GAGA--GAGAGAG--AG....................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0

droBip1

TAT-TTCT------------------------------------------------------------------------------------------------------TT-----------------------------------------------------------------------------------------------A------TTTCTTTTGTTGAATTCAAATCACTT------------------ACAG-----GG-TT--------AAG----AGG---------AAGAGA--G--AGAGA--GAG--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA---------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATT-TAAAGCC-TTTATTTATATAACCAGTTGAGAATTTTAACCCCATTTGTATTCCCTTAATTTCTAGATCTTAAATTCTAGATCTAATATACCCCCAAATTTCCCC---TCAGTG-----------------------------------------------------------------------------------------T---AGC-------------------------------------------------AAGC-AAT-------GGGCTG------GA-------AAAAGGA--G--AGAGA--GAG--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA---------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AC-AAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---AGC--------------------G------------------------------------TTAAAATGTGCAA------CA-------AAAGAGA--G--A--GAGAGAG--AGACAGAGACAGAGAGAGAGAGAGCGGGAAAAT-------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GT-GTGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGC-GTC----------GCG------CG-------AAAAGAC--G--A--GAGCGAG--AGAAAGAGAGAGAGAGAGAGAGAGAGTGAAATTTGAACTTGGAAATTT--TCTAGGAAAT---CAACTGATAATTATATACCTT---ATACTAATAGTTGCATTCACAATAC-GTATTTCCGAC-----------------------------------------A	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AA-ATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------GTAAATCAAGCA-----AGAGAGAGA--G--A--GAGAGAG--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGA--------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTC-TCTT-AA-------------------------------GAAC-----------------------------------------------------------------T-----------------------------------------------------------------------------------------------T------TTTCATTCTTTCTTTTCAGTCTACTT------------------AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGAAAACAGCTTTGGCTC	Size	Hit Count	Total Norm	Total
No Reads

dm3

CC-GAAG---------TTG-----------------------------------------------------------------------------------------------GTGCAGAAAA---------------------------------------------------------------------------------------------------------------------------------------------TAGAG-------GGGGAG------CG-------AGAGAGA--G--AGAGA--GAG--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA---------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................................................................................................................................................GAGA--GAG--AGAGAGAGAGA...........................................................................................................................................................	18	20	1.20	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................GAGAGA--G--AGAGA--GAG--AGAGAGA...............................................................................................................................................................	22	20	1.15	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0
..................................................................................................................GTGCAGAAAA---------------------------------------------------------------------------------------------------------------------------------------------TAGAG-------GGGGAG------C......................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................AGAGAGAGAGAGAGAGAGA.........................................................................................................................................	19	20	0.80	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................AGAGAGAGAGAGAGAGAGA---------------------------------------------------------------------------------------------------------------------------------------	19	20	0.75	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................A--G--AGAGA--GAG--AGAGAGAGAGAGAGA.......................................................................................................................................................	25	20	0.60	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
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.......................................................................................................................................................................................................................................................................................................................GAGA--GAG--AGAGAGAGAGAGA.........................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................GA--GAG--AGAGAGAGAGAGAGAGA.....................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................GAG------CG-------AGAGAGA--G--AGAGA--GAG--......................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GAGAGAGAGAGAGAGAGAGAGAG..........................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................CG-------AGAGAGA--G--AGAGA--GAG--AGAGAG................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................CG-------AGAGAGA--G--AGAGA--GAG--AGA...................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................GAGAGAGAGAGAGAGAGAGAGAG........................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................................................................................................................................................................................GAGAGAGAGAGAGAGAGAGAGAGA...........................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................CG-------AGAGAGA--G--AGAGA--GAG--AG....................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................GAGAGAGAGAGAGAGAGA...................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GAGA--G--AGAGA--GAG--AGAGAGAGAGAG..........................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................................................AGAGAGA--G--AGAGA--GAG--AGAGAG................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................AGAGA--GAG--AGAGAGAGAGAGAGAGAGA...................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
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...........................................................................................................................................................................................................................................................................................................GAGAGA--G--AGAGA--GAG--AGAG..................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GAGAGAGAGAGAGAGAGAGAGAGA.........................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GAGAGAGAGAGAGAGAGAGA---------------------------------------------------------------------------------------------------------------------------------------	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................G--AGAGA--GAG--AGAGAGAGAGA...........................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................G--AGAGAGAGAGAGAGAGAGAGAG................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................GAGAGAGAGAGAGAGAGAGAGAGA.............................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................GA--G--AGAGA--GAG--AGAGAGAGAGAGAGA.......................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSim2

A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGA----GAGA--GA--GAGAGAGAGAGAGAGAGAGAGGGAGAGGGAGAGAGAAGTCA----------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................................................................................................................................................................................................................A--GA--GAGAGAGAGAGAGAGAGAGAGGG....................................................................................................................................................	26	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................GA--GAGAGAGAGAGAGAG............................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................GAGAGAGAGAGAGAGAG..........................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................GAGAGAGAGAGAGAGAG......................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................GAGAGAGAGAGAGAGAG........................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AA-ACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC---ACC--------------------GAA--------------------------C----A------AAATAGCAA------AT-------AAAAAGAGAG--AATGA--GAG--AGAGAGAGAGAGAGAGAGGGGGATGGAGAGA--GCC---------------CCAA---CCAACTAGTTG-------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................................................................................................................................................GAG--AGAGAGAGAGAGAGAGA.....................................................................................................................................................	20	20	0.15	3	0	3	0	0
.............................................................................................................................................................................................................................................................................................................................GAG--AGAGAGAGAGAGAGA.......................................................................................................................................................	18	20	0.15	3	0	0	3	0
...................................................................................................................................................................................................................................................................................................................................GAGAGAGAGAGAGAGAGG...................................................................................................................................................	18	20	0.05	1	0	1	0	0

droYak3

TTT-GCCA-AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-AATT---TGT--------------------GAA--------------------------AAGC-GTC-------GG-GCA------TT-------CAAGAGA--G--AGAGA--GAG--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA---------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................................................................................................................................................................................................AGA--GAG--AGAGAGAGAGAGAGA.......................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA------GA-------AATGAGA--G--AGAGA--GAG--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA---------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................................................................................................................................................................................................................................................................................TGAGA--G--AGAGA--GAG--AGAGAGAGAGAGA.........................................................................................................................................................	27	8	0.13	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................G--AGAGAGAGAGAGAGAGAGAGAGAG..............................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................GAG--AGAGAGAGAGAGAGAGAGAGAG................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................GAGAGAGAGAGAGAGAGAGAGAGAG........................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................GAGAGAGAGAGAGAGAGAGAGAGAG............................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................GAGAGAGAGAGAGAGAGAGAGAGAG..........................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................GA--GAG--AGAGAGAGAGAGAGAGAGAG..................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0	0

dvi_9038

scaffold_12928:5689410-5689560 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ATTGGAAGATTGAAGCTGGAAAATGGGAAATCCCCCGTTTTAATTCAAATGCGATTTACTTGTCTCTTTAGTTCCCGAAGTTTTGTAGACAAAACAGTGTACAGTGTGGCACAAAAGAGTGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAATTCACTCAACAACTTGTTGTTATTCTTCTTGTCTTTACAGTTGGACTTAAAATCCAGCACTTGCGACAATTCCGAAAATAGCGATAATTC **************************************************************************************........((((........))))..................................................***************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	V053 head	SRR060677 Argx9_ovaries_total	M061 embryo	SRR1106729 mixed whole adult body	SRR060682 9x140_0-2h_embryos_total	SRR060673 9_ovaries_total	SRR060684 140x9_0-2h_embryos_total	SRR060686 Argx9_0-2h_embryos_total	V116 male body	SRR060685 9xArg_0-2h_embryos_total	SRR060689 160x9_testes_total	SRR060681 Argx9_testes_total	SRR060660 Argentina_ovaries_total	SRR060672 9x160_females_carcasses_total	SRR060676 9xArg_ovaries_total	SRR060687 9_0-2h_embryos_total	GSM1528803 follicle cells	SRR060662 9x160_0-2h_embryos_total	SRR060670 9_testes_total
...........................................................................................................................................................................................................GGACTTAAAATCCTGCGGTT............................	20	3	3	3.67	11	9	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................GACTTAAAATCCTGCGGTT............................	19	3	17	1.88	32	13	3	0	0	0	5	0	3	3	1	0	1	1	0	0	1	1	0	0	0
........................................................................................ACAAAACAGTGTACAGTG.................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GGGAAATCCCCGGGTTTAAC...............................................................................................................................................................................................................	20	3	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CTGTACAGTGGGACTTAAA.......................................	19	2	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TGGACTTAAAATCCTGCGGT.............................	20	3	7	0.14	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................GAGAGAGGGAGAGAGAAT.........................................................................................	18	0	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TTGTTATCCTTCTTGGCTT.......................................................	19	2	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................GAGTGAGAGCGAGAGAGAGAGAGA...............................................................................................................	24	0	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......GATCGAAGCTGGAAACAGGG................................................................................................................................................................................................................................	20	3	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................AGAGAGAGAGAGAGAGAGGGA.................................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
................................................................................................................................GAGAGAGAGAGAGAGAGAGAGAG....................................................................................................	23	0	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................AGAGAGAGAGAGAGAGAGAGGGAGAG..............................................................................................	26	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................AGAGAGAGAGAGAGAGAGAGAGAG....................................................................................................	24	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.............................................................................................................................CGAGAGAGAGAGAGAGAGAGAGAGA.....................................................................................................	25	0	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................GAGAGAGAGAGAGAGAGAGAGGGA.................................................................................................	24	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................GAGAGAGAGAGAGAGAGAGAGAGGGA.................................................................................................	26	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

-2.6	-2.1	-2.1