ID:

dvi_8954

 Coordinate:

scaffold_12928:4957309-4957579 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ16946-cds]; exon [dvir_GLEANR_17450:2]; exon [dvir_GLEANR_17450:1]; CDS [Dvir\GJ16946-cds]; intron [Dvir\GJ16946-in]

Repeatable elements

NameClassFamilyStrand
(TA)nSimple_repeatSimple_repeat+
(TG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_10324:518788-518808 +
  2. dvi_23091  scaffold_12822:3054842-3054862 +
  3. scaffold_12855:3255802-3255822 +
  4. dvi_24377  scaffold_12875:11641573-11641593 +
  5. scaffold_12875:12930373-12930393 +
  6. dvi_8376  scaffold_12928:1086219-1086239 +
  7. scaffold_12928:5220157-5220177 +
  8. scaffold_12928:5844101-5844121 +
  9. dvi_23367  scaffold_12928:7405333-7405353 +
  10. scaffold_12928:7405531-7405551 +
  11. scaffold_12963:13284421-13284441 +
  12. scaffold_12970:2331340-2331360 +
  13. scaffold_12970:10311309-10311329 +
  14. scaffold_13042:266569-266589 +
  15. scaffold_13042:624508-624528 +
  16. scaffold_13042:2834819-2834839 +
  17. scaffold_13047:6639771-6639791 +
  18. scaffold_13049:43917-43937 +
  19. scaffold_13049:3623895-3623915 +
  20. scaffold_13049:20188585-20188605 +
  21. scaffold_10324:382617-382637 +
  22. scaffold_12855:2672824-2672844 +
  23. scaffold_12855:3558258-3558278 +
  24. dvi_23332  scaffold_12875:5435111-5435131 +
  25. scaffold_12875:10498967-10498987 +
  26. scaffold_12875:19833445-19833465 +
  27. scaffold_12932:1377246-1377266 +
  28. scaffold_12963:4409669-4409689 +
  29. scaffold_12963:11300107-11300127 +
  30. scaffold_12963:18943422-18943442 +
  31. scaffold_12970:5997943-5997963 +
  32. scaffold_12970:10944745-10944765 +
  33. scaffold_13042:2867018-2867038 +
  34. scaffold_13042:3288128-3288148 +
  35. scaffold_13042:4155930-4155950 +
  36. scaffold_13047:1018917-1018937 +
  37. scaffold_13047:6612343-6612363 +
  38. scaffold_13049:2909974-2909994 +
  39. scaffold_13049:14977863-14977883 +
  40. scaffold_13049:17404818-17404838 +
  41. scaffold_12822:1778669-1778689 +
  42. scaffold_12855:1878987-1879007 +
  43. scaffold_12855:2496589-2496609 +
  44. scaffold_12875:1288015-1288035 +
  45. scaffold_12875:1358417-1358437 +
  46. scaffold_12875:14930983-14931003 +
  47. scaffold_12875:19974758-19974778 +
  48. scaffold_12875:20502210-20502230 +
  49. scaffold_12928:4917132-4917152 +
  50. scaffold_12932:503655-503675 +
  51. scaffold_12963:2419967-2419987 +
  52. scaffold_12963:4117555-4117575 +
  53. scaffold_12963:13145269-13145289 +
  54. scaffold_12970:9653502-9653522 +
  55. scaffold_12970:10510396-10510416 +
  56. scaffold_13047:16837285-16837305 +
  57. scaffold_13049:1600091-1600111 +
  58. scaffold_13049:1925351-1925371 +
  59. scaffold_13049:17820093-17820113 +
  60. scaffold_13246:532446-532466 +
  61. scaffold_10324:1114407-1114427 +
  62. scaffold_12726:472120-472140 +
  63. scaffold_12822:2325711-2325731 +
  64. scaffold_12855:4131844-4131864 +
  65. scaffold_12875:16350070-16350090 +
  66. scaffold_12928:54873-54893 +
  67. scaffold_12928:3714124-3714144 +
  68. dvi_8954  scaffold_12928:4957330-4957350 +
  69. scaffold_12928:6633411-6633431 +
  70. scaffold_12963:5107181-5107201 +
  71. scaffold_12970:6911863-6911883 +
  72. scaffold_12970:10964002-10964022 +
  73. scaffold_13042:824498-824518 +
  74. scaffold_13049:1635428-1635448 +
  75. scaffold_13049:1962034-1962054 +
  76. scaffold_13049:3427603-3427623 +
  77. scaffold_13049:10277546-10277566 +
  78. scaffold_12726:1801168-1801188 +
  79. scaffold_12823:524547-524567 +
  80. scaffold_12875:11510351-11510371 +
  81. scaffold_12875:11956520-11956540 +
  82. scaffold_12928:2172537-2172557 +
  83. scaffold_12928:4141152-4141172 +
  84. scaffold_12928:5245768-5245788 +
  85. scaffold_12932:895169-895189 +
  86. scaffold_12963:18810761-18810781 +
  87. scaffold_12970:1775733-1775753 +
  88. scaffold_12970:8181081-8181101 +
  89. scaffold_12970:8335462-8335482 +
  90. scaffold_12970:10651552-10651572 +
  91. scaffold_13042:4945645-4945665 +
  92. scaffold_13047:1675279-1675299 +
  93. scaffold_13047:8022236-8022256 +
  94. scaffold_13047:9393212-9393232 +
  95. scaffold_13047:15400609-15400629 +
  96. scaffold_13049:239728-239748 +
  97. scaffold_13049:4192940-4192960 +
star
  1. scaffold_2206:348-365 +
  2. scaffold_12723:1673204-1673221 +
  3. scaffold_12726:128322-128339 +
  4. scaffold_12822:1008723-1008740 +
  5. scaffold_12875:18792034-18792051 +
  6. scaffold_12928:2723401-2723418 +
  7. scaffold_12928:4520286-4520303 +
  8. dvi_8954  scaffold_12928:4957360-4957377 +
  9. scaffold_12932:900602-900619 +
  10. scaffold_12963:1082069-1082086 +
  11. scaffold_12963:9163048-9163065 +
  12. scaffold_12970:3314400-3314417 +
  13. scaffold_13042:3256140-3256157 +
  14. scaffold_13047:9484989-9485006 +
  15. scaffold_13047:12004911-12004928 +
  16. scaffold_13049:1715367-1715384 +
  17. scaffold_13049:8023688-8023705 +
  18. scaffold_13049:11093696-11093713 +

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAAGACGGCGGTGCTGCGCTTTGCTGCGCACGGACTGCGGCTCAAGTACGGTAAGCATATACATATATATCTATATATATATATGTGTGTGTGTGTGGGGGTGTGTGTGGGTGTGTGTGTGTCAATTTGCCATCAATAGCTTTTGATTGAAATGATTATTTTGCACAGACTGGCAACCTTTTACGCGTAACAGTCTGCCAATTTGAATTCGATAAAGCGTTGCCAGACTGTTGCAAAAATCCAGAGACTTAAATTTATCATATAAAATGTTAGTTCCGCATTGTGAATAAGATTTATTGGCATATATCTTGATTCGATTAGTGTTTGGCAAGACGTTGCATCAACAGCGACCGCAGGTCACGGACACACTG
***********************************************************************(((((((((((....)))))))))))......................************************************************************************************************************************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M027
male body		 V047
embryo
 SRR060671
9x160_males_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR1106729
mixed whole adult body
 M061
embryo
 SRR060659
Argentina_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060680
 9xArg_testes_total
 SRR060683
160_testes_total
 V053
head
....................................................................................................................................................................................................................................................................................................................................................TCAACAGCGACCGCAGGTCACGGAC...... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................CAGCGACCGCAGGTCAAGGACACACTG 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......GCGGTGCTGCGCTTTGCTGCGCACGGGCTGCGGCT......................................................................................................................................................................................................................................................................................................................................... 35 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...GACGGCGGTGCTGCGCTTTGCTGCGC...................................................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................ACGTGTTTGGCAAGACGTTGCA............................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................ATCAACAGCGACCGCAGGTCCCGGA....... 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................GCAAGACGTTGCATCAACAGCGTAT................... 25 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................CGCACGGACTGCGGCTCAAGTACGT................................................................................................................................................................................................................................................................................................................................ 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................GATACGATTATTGTTTGGC.......................................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................TTGCTGCGCACGGACTGC............................................................................................................................................................................................................................................................................................................................................. 18 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................AGCGAAAGCAGGTCACGG........ 18 2 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0
......................................TCCTCAAGTACGGTAAGGA.......................................................................................................................................................................................................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................TGGGGGTGTGAGTAGATGTGT............................................................................................................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................TATATATATATATGTGTGTGT....................................................................................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................TGTGTGTGGGTGTGTGTG............................................................................................................................................................................................................................................................ 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................ATATATGTGTGTGTGTGT................................................................................................................................................................................................................................................................................... 18 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTTCTGCCGCCACGACGCGAAACGACGCGTGCCTGACGCCGAGTTCATGCCATTCGTATATGTATATATAGATATATATATATACACACACACACACCCCCACACACACCCACACACACACAGTTAAACGGTAGTTATCGAAAACTAACTTTACTAATAAAACGTGTCTGACCGTTGGAAAATGCGCATTGTCAGACGGTTAAACTTAAGCTATTTCGCAACGGTCTGACAACGTTTTTAGGTCTCTGAATTTAAATAGTATATTTTACAATCAAGGCGTAACACTTATTCTAAATAACCGTATATAGAACTAAGCTAATCACAAACCGTTCTGCAACGTAGTTGTCGCTGGCGTCCAGTGCCTGTGTGAC
************************************************************************************************************************************************************************************************************************************************************(((((((((((....)))))))))))......................*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 V053
head
 SRR060674
9x140_ovaries_total
 SRR060689
160x9_testes_total
 M028
head
 SRR060687
9_0-2h_embryos_total
 M047
female body
 SRR060666
160_males_carcasses_total
 SRR060685
9xArg_0-2h_embryos_total
 V116
male body
.................................................................................................................................................................................................................................................................................................................................................CGTAGTCGTCGCTAGCGTCC.............. 20 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................AAACAGTTAAGAGGTAGTTAT......................................................................................................................................................................................................................................... 21 3 13 0.08 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................CCAAGCTAATCAGAAACCG.......................................... 19 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0
..........CACGACGCGCAACGAAGCTT..................................................................................................................................................................................................................................................................................................................................................... 20 3 14 0.07 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................CCAAGCTAATCACAAAGC........................................... 18 2 17 0.06 1 0 0 0 0 1 0 0 0 0 0
.................................TGAGGCCCAGTTCTTGCC................................................................................................................................................................................................................................................................................................................................ 18 3 18 0.06 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................CAAGCTAATCAGAAACCG.......................................... 18 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CGCGACGGTAGGACAACGTTT...................................................................................................................................... 21 3 19 0.05 1 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................AAAACTAACTTACCTAGTAAA.................................................................................................................................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................................................................................GTAACCGTATATAGAACCTA......................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................................................................................................................TAAGCTAATCAGAAAGCG.......................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:4957259-4957629 + dvi_8954 CAAGACG-GCGGT-GCTGCGCTTTGCT--GCGCACGGACTGCGGCTCAAGTACGGTAAG-----------CATA----------------------------------TACA--TATATATCTATA----TA-------------------TATATATG--------TGTGTGTGTGTGGGG------GTGT----GT----GTGGGTGTGT--GT-----------------------GTGT----CAAT---------------------------------------------------------------TT-------------------------------------------------------------------------------GCCATCA------ATAGC-------------TTTTG---------------ATTGAAAT-----------------------GATTATTTTGCACAGACTGGCAAC-CTTTT-----------------A-----------CGCGTAACAGTCTGCCAATTT--GAATTC-----------------GATAAA-------------GCGTTGCCAGACTGTTGCAAAAATCCAG--AGACTTAAATTTATCATATAAAATG---------------------TTAGT------TCCGCATTGTGAATAAGATTTATTGGCATATATC---------------------------------TT---GA-------------------------TTCGATTAGTGTTTGGCAAGACGTTGCATCAACAGCGACCGCAGGTCACGGACACACTG
droMoj3 scaffold_6359:3466726-3467186 + dmo_584 CAAGACG-GCGGT-GCTACGTTTCGCA--GCGCACGGACTTCGCCTCAAATACGGTAAG------------TGCACT----CTGCATG----------CATGCATATATGCATTT-------TATT----TG-------------------TGTGCATA----------TACATACATACAC----------A----CATACATAGATATAC--AT----ATATGCAGTAAGTGCACACTCAT----T-------------------------------------------------------------------AAAG----------------------------------------------------------------------------GCAATAA------ATAAT-------------ATTTG---------------ATTTCAATTGGTATTTTTTCATAGTTTCCATAACAGCTTTATGCAGTCTGGCAGCTCTTTT-----------------G-----------CTTTTAACGAGCTGACCATTTTCGAATTCTCCTCTCTTTCGTGCTTAACGAAACTTGCACGCTTAGTGCTGCCAGACTGCCGTGAAAGCCGTT--AAGCTTGCGATAAGCAAAC----------------------------------ATAA---------------A-----------------------------------CATTTAAATAAAATTATTTATGAACTGTTTTTGTTTGTCTTTCGCTTCTGCAATTAGTTTTTGGCAAAACGCTGCATCAACAGCGGCCGCAGGTGACAGACACACTG
droGri2 scaffold_15081:2718298-2718712 - CAAAACG-GCAGT-GCTGCGTTTCGCT--GCGCACGGACTGCGGCTTAAATACGGTAAG-----------CTACAACAAACAAACAAG--CAAACAAA----------CAAA--CA---------------------------------------------------AGCAAACGAACAA-----------------------------------------------------GCAAACTCGT----C-------------------------------------------------------------------ACAGTTTAAATTATTTCCATG------------------------------------------------------------------CAATTTT-------------C-CTTCACTA----------------------------------------------------TCACACTATCTGGCAACTCAATT---TTAAGTGCACTTTGGCCGTTACAAAGGCCGTTACGATCTGAAAATTT--AAACTT-----------------G----------TT-GC-CGGTGCTGCCAGACTGCAAGA-GAGATGTGTTGCACTTAAGCACATGACTTAAAATAGTTGTAGCTATCGATATTTAATCAAT-------TCGCATCGAAATTTAAAT----TGACTTATGCTTTTTTTTATTTTTGTTT---------------ATT----------------------------------TTTAGTGTTTGGTAAGACACTGCATCTTCAGAGGCCCCAAGTGACGGACACTCTA
droWil2 scf2_1100000004516:3080655-3080795 - CATC--------------------------------------------------------------------------------------------------------TACG--TG------TGTG-----------------------TGTGTGTGTG------------TGTGTGTGTGTGT------GTG----TGTGTGTGTGTGTGT--G----TGT-----------------GTGT----GGT-ATT------TGCCGTGTCACTTTCAATTAAACTACATAGTATGGCATCATCTAATTGGCAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTGGGTAAATTTGAT-----------------------------------------------------------------------------------------
dp5 XL_group1e:6463757-6463854 + GGCGTTG-AC-------GCGCTGTGCT--GCTCAT--------------------------------------------------CAGTAAGCACA------------CACA--CACATACCTCTG----CA-------------------GTGGTGTG--------TGTGTGCGTGTGTGT------GTGT----GT----GTGTGTGTGT--TT-----------------------GTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_20:379868-380012 - GGCTGCA-TTGG-------GACTTGCTCAACGC-TCGATTGCGCGACAATCGCAATGGG------ACCATAC---------ATATATA--------------------CATA--TA------CATG----CA---------------TGTCTAT----GTG--------TATGTGTATGTGTAT------GT----GT----ATGTGTATGT--GTATGTTT-----------------ATGT----GCT------------------------------------------------------------------------------------------------------------------------------------------------------CC------A-------------CAGCTTATC---------------ATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12943:1749912-1750072 - CAGGCGTACGAG-------GAAC---TGAACGT-TTTATTGC--ATGAGAGACG-----------GCTAACA---------AGTCGTG--TATATACA----------CACA--CA------TACATTCATACAT---------------ATATATT------------TGTGTGTGTTTCT------G--T----CT----GCA--TGTGT--G----TGT-----------------GTGC----GATT---------------------------------------------------------------TT-------------------------------------------------------------------------------AACGTAA------ATAATTTAGGTGTGAA-----------------------------------------------------GATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATCG
droBip1 scf7180000395176:24511-24599 + TTAAATA---------------------------------------------TATTG------------TAT---------ATA------------------------TATA--TATATACATATA----TA-------------------------TATA--------TATATGTGTGTGTGTGTGTG----------------TTTGTGTATGT-----------------------GTTT-----------------------------------------------------------------------TG-------------------------------------------------------------------------------GTTG---C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGC-----------------------------------------------------------------------------------------
droKik1 scf7180000302696:1088959-1089050 - GGCTACG-CCGGAA-------------------GTGGACAGCC---------------------------ATAAAA----------TA----------TA------TCTATG--TG------TGTG----TG-------------------TGTGTGTGTG--------TGTGTGTGTGTGTGT------GT----GT----GTGTGTGTGT--GT-----------------------GTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453882:1155556-1155619 + ATATATA-----------------------------------------------------------------------------------------------------TCTA--GC------TGTA----CA-------------------TGTATGTGTG--------TGTGTGTGTGTGTGT------GT----GT----ATGTGTGTGT--GT-----------------------ATGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490214:187233-187650 + CAAAACA-GCCGT-TTTGCGTTTCGCC--GCCCATGCATTGCGATTAAAGCATGGTAAGAATAAGAATATAC---------AGAAATA--CAAATTGG---------GAGTG--CC------ACTG----AA---AAGATACTCGCAGGGCAAT----ATATTTAGAAAGGTGTCTAAAA----------------------GTATGCAACA--ATAT---------------GTAAAAGCGC----C-------------------------------------------------------------------AAAGTCCGTGGGATTCATATTGAAAGACCATTGACCATTCTTTTTCATTGCATACTTTTAGACACATTTTTAAGTCTTTT-------CAAAACC-------------CAATTGATTTGTATGGCACACC---------------------------------------------------------------------------------------CAATGGTTTTTTTGATCTGATAGTAG--ATACTT-----------------A----------AT-GT----------------------------------------ACAATATTTCATAAAACACTTATTGACTTTAAGAACTAATCAAGGAATAA---------------AT-------------------------------------------------GAT----------------------------------TTTAGCCTTTGGCAACAGTCTGATGCACCAGCGACCCCAAGTCACGGACACGCTG
droRho1 scf7180000779931:308-394 + AAGTACA-GTAAG-TCTAA---------------------------------------------------GA---------GAGAGTG----------TA------GATGTG--TC------GCTG----TG-------------------TGTGTGTG--------TGTGGGTGTGTGTGG----------GTGTGT----GTGGGTGTGT--GT-----------------------GGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302088:455157-455257 - AAATATA-----------------------------------------------------------------------------------------------------TATA--TA------TATA----TA-------------------TATATATATA--TATGTGTGTGTGTGTGT----------------GT----GTGTGTGTGT--GT-----------------------GTGTAAACGTTC---------------------------------------------------------------TT-------------------------------------------------------------------------------TTAG---C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTGTATAGAAATAA---------------AT-------------------------------------------------ATT-----------------------------------------------------------------------------------------
droTak1 scf7180000415125:120930-121017 + CAAAACA-GCCGT-CTTGCGGTTCGCC--GCCCATGCACTGCGTTTGAAGCACGGTGAG-----------ATATAAT----ATAAA----------------------TAT-------------------------------------------------------------------------------------AA----ATAAATAGAT--AT-----------------------ATGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409528:416238-416363 - AGCATAA--------------------------------------------------------------TAA---------ATA------------------------AATT--AA------TATA----CT-------------------TAAATGTGTG--------TGTGTGTGTGTGTGT------GT----AT----GAGTGTGTGT--GT-----------------------GTGT----C-------------------------------------------------------------------GAA--------------------------------------------------------------------------------G---CAATTTA-------------CAATTCATTATTTTGCCATTCTCAATTTCAAT----------------------------TTTTGCACAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------
dm3 chrX:3681489-3681627 - TGTGG---------------------------------------TTCAGATACG-----------ACTATAT---------ACAAATG--TATATATA----------TATG--TA------TATATATATATAT---------------ATATATA------------TATATATATATAT------G--T----GT----GTG--TGTGT--G----TGT-----------------GTGT----GGT-GTTAATGTTTATGGTATTTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTAAATCAATTTTTT-----------------------------------------------------------------------------------------
droSim2 x:3387857-3387945 - TGTGG---------------------------------------TTCAGATACG-----------ACTATAT---------ACAAATG----------TA--------TATA--TA------TATA----TA--T---------------ATATATATG--------TGTGTGTT--------------------------------TGTGT--G----TGT-----------------GTGT----GGT-GTTTATGTCTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------
droSec2 scaffold_4:669774-669886 - CAAAACG-GCGGCAGCTTCATTT------------------AGTTTTTGGCCTGCTT--------------C---------ACATATG----------CA--------TATA--CA------TATA----CA--T---ATA------CTTATGTGCGTA------------TGTGTATTTTAGG------GGGTGAGT----GTGTGTGTGT--GT-----------------------GTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:9409738-9409818 + CAAAACA-GCCGT-TCTGCGCTTCGCC--GCCCATGCACTGCGATTAAAACATGGTAAG-----------CTATATC----ACAAATG----------AG-----------------------------------------------------------------------------------------------------------TAAAT--AT-----------------------ATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4929:25899154-25899286 + ATATATA-----------------------------------------------------------------------------------------------------TATA--TA------TATA----TA-------------------TATATATATA--------TGTATATATATATGT------AT----GT----ATATGAGTGT--AT-----------------------ATGT----T-------------------------------------------------------------------GAA-------------------------------------------------------------------------------TATGA------ATTG----------CTGTGTATG---------------ATTCAAAT-----------------------GGTTCCATTATGCCAAAAAAAAGC-GTTTTGTC--------------A-----------CGCGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAAGACG-GCGGT-GCTGCGCTTTGCT--GCGCACGGACTGCGGCTCAAGTACGGTAAG-----------CATA----------------------------------TACA--TATATATCTATA----TA-------------------TATATATG--------TGTGTGTGTGTGGGG------GTGT----GT----GTGGGTGTGT--GT-----------------------GTGT----CAAT---------------------------------------------------------------TT-------------------------------------------------------------------------------GCCATCA------ATAGC-------------TTTTG---------------ATTGAAAT-----------------------GATTATTTTGCACAGACTGGCAAC-CTTTT-----------------A-----------CGCGTAACAGTCTGCCAATTT--GAATTC-----------------GATAAA-------------GCGTTGCCAGACTGTTGCAAAAATCCAG--AGACTTAAATTTATCATATAAAATG---------------------TTAGT------TCCGCATTGTGAATAAGATTTATTGGCATATATC---------------------------------TT---GA-------------------------TTCGATTAGTGTTTGGCAAGACGTTGCATCAACAGCGACCGCAGGTCACGGACACACTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAGCGACCGCAGGTCACGGAC......2511.001100000000000000000000000000000000000000000000000000000000000000
...GACG-GCGGT-GCTGCGCTTTGCT--GCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGACGTTGCATCAACAGCGTAT...................2511.001000000000000000000000000001000000000000000000000000000000000000
..............................CGCACGGACTGCGGCTCAAGTACGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
......................TTGCT--GCGCACGGACTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TATA----TA-------------------TATATATG--------TGTGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................................................................................TGT----GT----GTGGGTGTGT--GT-----------------------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000100000000000000000000000000000000
........................................................................................................................................................ATATATG--------TGTGTGTGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000000000000000000000000001000
droMoj3
CAAGACG-GCGGT-GCTACGTTTCGCA--GCGCACGGACTTCGCCTCAAATACGGTAAG------------TGCACT----CTGCATG----------CATGCATATATGCATTT-------TATT----TG-------------------TGTGCATA----------TACATACATACAC----------A----CATACATAGATATAC--AT----ATATGCAGTAAGTGCACACTCAT----T-------------------------------------------------------------------AAAG----------------------------------------------------------------------------GCAATAA------ATAAT-------------ATTTG---------------ATTTCAATTGGTATTTTTTCATAGTTTCCATAACAGCTTTATGCAGTCTGGCAGCTCTTTT-----------------G-----------CTTTTAACGAGCTGACCATTTTCGAATTCTCCTCTCTTTCGTGCTTAACGAAACTTGCACGCTTAGTGCTGCCAGACTGCCGTGAAAGCCGTT--AAGCTTGCGATAAGCAAAC----------------------------------ATAA---------------A-----------------------------------CATTTAAATAAAATTATTTATGAACTGTTTTTGTTTGTCTTTCGCTTCTGCAATTAGTTTTTGGCAAAACGCTGCATCAACAGCGGCCGCAGGTGACAGACACACTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................TACGTTTCGCA--GCGCACGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
CAAAACG-GCAGT-GCTGCGTTTCGCT--GCGCACGGACTGCGGCTTAAATACGGTAAG-----------CTACAACAAACAAACAAG--CAAACAAA----------CAAA--CA---------------------------------------------------AGCAAACGAACAA-----------------------------------------------------GCAAACTCGT----C-------------------------------------------------------------------ACAGTTTAAATTATTTCCATG------------------------------------------------------------------CAATTTT-------------C-CTTCACTA----------------------------------------------------TCACACTATCTGGCAACTCAATT---TTAAGTGCACTTTGGCCGTTACAAAGGCCGTTACGATCTGAAAATTT--AAACTT-----------------G----------TT-GC-CGGTGCTGCCAGACTGCAAGA-GAGATGTGTTGCACTTAAGCACATGACTTAAAATAGTTGTAGCTATCGATATTTAATCAAT-------TCGCATCGAAATTTAAAT----TGACTTATGCTTTTTTTTATTTTTGTTT---------------ATT----------------------------------TTTAGTGTTTGGTAAGACACTGCATCTTCAGAGGCCCCAAGTGACGGACACTCTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CATC--------------------------------------------------------------------------------------------------------TACG--TG------TGTG-----------------------TGTGTGTGTG------------TGTGTGTGTGTGT------GTG----TGTGTGTGTGTGTGT--G----TGT-----------------GTGT----GGT-ATT------TGCCGTGTCACTTTCAATTAAACTACATAGTATGGCATCATCTAATTGGCAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTGGGTAAATTTGAT-----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...C--------------------------------------------------------------------------------------------------------TACG--TG------TGTG-----------------------TGTGTGTGTG------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21180.11200200
dp5
GGCGTTG-AC-------GCGCTGTGCT--GCTCAT--------------------------------------------------CAGTAAGCACA------------CACA--CACATACCTCTG----CA-------------------GTGGTGTG--------TGTGTGCGTGTGTGT------GTGT----GT----GTGTGTGTGT--TT-----------------------GTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................T----GT----GTGTGTGTGT--TT-----------------------GTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------18200.0510100000000
droPer2
GGCTGCA-TTGG-------GACTTGCTCAACGC-TCGATTGCGCGACAATCGCAATGGG------ACCATAC---------ATATATA--------------------CATA--TA------CATG----CA---------------TGTCTAT----GTG--------TATGTGTATGTGTAT------GT----GT----ATGTGTATGT--GTATGTTT-----------------ATGT----GCT------------------------------------------------------------------------------------------------------------------------------------------------------CC------A-------------CAGCTTATC---------------ATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......A-TTGG-------GACTTGCTCAACGC-T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
..............................................................................................................................................................................GTATGTGTAT------GT----GT----ATGTGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000002
................................................................................................................................................................G--------TATGTGTATGTGTAT------GT----GT----A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000002
.........................................................................................................................................................................TATGTGTATGTGTAT------GT----GT----ATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
.......................................................................................................................................................TAT----GTG--------TATGTGTATGTGTAT------G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
.....................................................................................................................................................................................TAT------GT----GT----ATGTGTATGT--GTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
...............................................................................................................................................................................TATGTGTAT------GT----GT----ATGTGTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
....................................................................................................................................................................................GTAT------GT----GT----ATGTGTATGT--G.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000001
droAna3
CAGGCGTACGAG-------GAAC---TGAACGT-TTTATTGC--ATGAGAGACG-----------GCTAACA---------AGTCGTG--TATATACA----------CACA--CA------TACATTCATACAT---------------ATATATT------------TGTGTGTGTTTCT------G--T----CT----GCA--TGTGT--G----TGT-----------------GTGC----GATT---------------------------------------------------------------TT-------------------------------------------------------------------------------AACGTAA------ATAATTTAGGTGTGAA-----------------------------------------------------GATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTAAATA---------------------------------------------TATTG------------TAT---------ATA------------------------TATA--TATATACATATA----TA-------------------------TATA--------TATATGTGTGTGTGTGTGTG----------------TTTGTGTATGT-----------------------GTTT-----------------------------------------------------------------------TG-------------------------------------------------------------------------------GTTG---C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGC-----------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GGCTACG-CCGGAA-------------------GTGGACAGCC---------------------------ATAAAA----------TA----------TA------TCTATG--TG------TGTG----TG-------------------TGTGTGTGTG--------TGTGTGTGTGTGTGT------GT----GT----GTGTGTGTGT--GT-----------------------GTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
ATATATA-----------------------------------------------------------------------------------------------------TCTA--GC------TGTA----CA-------------------TGTATGTGTG--------TGTGTGTGTGTGTGT------GT----GT----ATGTGTGTGT--GT-----------------------ATGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CAAAACA-GCCGT-TTTGCGTTTCGCC--GCCCATGCATTGCGATTAAAGCATGGTAAGAATAAGAATATAC---------AGAAATA--CAAATTGG---------GAGTG--CC------ACTG----AA---AAGATACTCGCAGGGCAAT----ATATTTAGAAAGGTGTCTAAAA----------------------GTATGCAACA--ATAT---------------GTAAAAGCGC----C-------------------------------------------------------------------AAAGTCCGTGGGATTCATATTGAAAGACCATTGACCATTCTTTTTCATTGCATACTTTTAGACACATTTTTAAGTCTTTT-------CAAAACC-------------CAATTGATTTGTATGGCACACC---------------------------------------------------------------------------------------CAATGGTTTTTTTGATCTGATAGTAG--ATACTT-----------------A----------AT-GT----------------------------------------ACAATATTTCATAAAACACTTATTGACTTTAAGAACTAATCAAGGAATAA---------------AT-------------------------------------------------GAT----------------------------------TTTAGCCTTTGGCAACAGTCTGATGCACCAGCGACCCCAAGTCACGGACACGCTGSizeHit CountTotal NormTotal
No Reads
droRho1
AAGTACA-GTAAG-TCTAA---------------------------------------------------GA---------GAGAGTG----------TA------GATGTG--TC------GCTG----TG-------------------TGTGTGTG--------TGTGGGTGTGTGTGG----------GTGTGT----GTGGGTGTGT--GT-----------------------GGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AAATATA-----------------------------------------------------------------------------------------------------TATA--TA------TATA----TA-------------------TATATATATA--TATGTGTGTGTGTGTGT----------------GT----GTGTGTGTGT--GT-----------------------GTGTAAACGTTC---------------------------------------------------------------TT-------------------------------------------------------------------------------TTAG---C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTGTATAGAAATAA---------------AT-------------------------------------------------ATT-----------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CAAAACA-GCCGT-CTTGCGGTTCGCC--GCCCATGCACTGCGTTTGAAGCACGGTGAG-----------ATATAAT----ATAAA----------------------TAT-------------------------------------------------------------------------------------AA----ATAAATAGAT--AT-----------------------ATGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AGCATAA--------------------------------------------------------------TAA---------ATA------------------------AATT--AA------TATA----CT-------------------TAAATGTGTG--------TGTGTGTGTGTGTGT------GT----AT----GAGTGTGTGT--GT-----------------------GTGT----C-------------------------------------------------------------------GAA--------------------------------------------------------------------------------G---CAATTTA-------------CAATTCATTATTTTGCCATTCTCAATTTCAAT----------------------------TTTTGCACAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TGTGG---------------------------------------TTCAGATACG-----------ACTATAT---------ACAAATG--TATATATA----------TATG--TA------TATATATATATAT---------------ATATATA------------TATATATATATAT------G--T----GT----GTG--TGTGT--G----TGT-----------------GTGT----GGT-GTTAATGTTTATGGTATTTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTAAATCAATTTTTT-----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................GTGT--G----TGT-----------------GTGT----GGT-GTTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...............................................................................................................................................................................................T----GT----GTG--TGTGT--G----TGT-----------------GTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TGTGT--G----TGT-----------------GTGT----GGT-GTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000
.............................................................................................................................................................................TATATATAT------G--T----GT----GTG--TGTGT--........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
..................................................................................................................................TATAT---------------ATATATA------------TATATATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................GTGT--G----TGT-----------------GTGT----GGT-GTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................TATATAT------G--T----GT----GTG--TGTGT--........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................................................................................................................................................................TATATATATAT------G--T----GT----GTG--TGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010
............................................................................................................TATG--TA------TATATATATATAT---------------ATATATA------------TATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................30200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TA------------TATATATATATAT------G--T----GT----GTG--TGTGT--........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.....................................................................................ATG--TATATATA----------TATG--TA------TA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................ATAT------G--T----GT----GTG--TGTGT--G----T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...............................................................................................................................................................................TATATAT------G--T----GT----GTG--TGTGT--G----T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................ATATATA----------TATG--TA------TATATATATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................T------G--T----GT----GTG--TGTGT--G----TGT-----------------GTGT----GGT-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................ATATAT------G--T----GT----GTG--TGTGT--G----TG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TAT------G--T----GT----GTG--TGTGT--G----TGT-----------------GTGT----G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TATATATATAT------G--T----GT----GTG--TGTGT--........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................TATATATATATAT------G--T----GT----GTG--T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.............................................................................................................................................................................TATATATAT------G--T----GT----GTG--TGTGT--G----T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
............................................................................................................TATG--TA------TATATATATATAT---------------ATATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................ATAT------G--T----GT----GTG--TGTGT--G----TG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................ATATATATAT------G--T----GT----GTG--TGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................T----GTG--TGTGT--G----TGT-----------------GTGT----GGT-G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
droSim2
TGTGG---------------------------------------TTCAGATACG-----------ACTATAT---------ACAAATG----------TA--------TATA--TA------TATA----TA--T---------------ATATATATG--------TGTGTGTT--------------------------------TGTGT--G----TGT-----------------GTGT----GGT-GTTTATGTCTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................ATG--------TGTGTGTT--------------------------------TGTGT--G----TGT-----------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2090.89800008000000000000
droSec2
CAAAACG-GCGGCAGCTTCATTT------------------AGTTTTTGGCCTGCTT--------------C---------ACATATG----------CA--------TATA--CA------TATA----CA--T---ATA------CTTATGTGCGTA------------TGTGTATTTTAGG------GGGTGAGT----GTGTGTGTGT--GT-----------------------GTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CAAAACA-GCCGT-TCTGCGCTTCGCC--GCCCATGCACTGCGATTAAAACATGGTAAG-----------CTATATC----ACAAATG----------AG-----------------------------------------------------------------------------------------------------------TAAAT--AT-----------------------ATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
ATATATA-----------------------------------------------------------------------------------------------------TATA--TA------TATA----TA-------------------TATATATATA--------TGTATATATATATGT------AT----GT----ATATGAGTGT--AT-----------------------ATGT----T-------------------------------------------------------------------GAA-------------------------------------------------------------------------------TATGA------ATTG----------CTGTGTATG---------------ATTCAAAT-----------------------GGTTCCATTATGCCAAAAAAAAGC-GTTTTGTC--------------A-----------CGCGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................TA--------TGTATATATATATGT------AT----G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.0611000000

Generated: 05/17/2015 at 05:25 AM