ID:

dvi_8939

 Coordinate:

scaffold_12928:4903446-4903596 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.3 -7.7 -7.6

Flybase annnotation

CDS [Dvir\GJ16942-cds]; exon [dvir_GLEANR_17447:4]; intron [Dvir\GJ16942-in]

Repeatable elements

NameClassFamilyStrand
(TC)nSimple_repeatSimple_repeat+
(CAAAAA)nSimple_repeatSimple_repeat+
mature
  1. dvi_8939  scaffold_12928:4903540-4903565 +
  2. scaffold_13042:509882-509907 -
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAAACAATTTATTTGCTCTACTAATCACATGTAATATATTCCATCTCTCTCTCTCTCACCTTCTCTCTCTCTCTCTCTTTTTTCGCTGTCTGCATTCATGCAACTCTTTCCATGCATTCCATCTCTTTTGCACACGCACACCAAAAACAACAACAACAACAAATATAACACAAACAAAAACAAAACACACTTGTCTTGCAGTGAGCTATGCGGGCGCTGCCACGCCCATGCGTGCACCGTACAAGCTGCCG
**************************************************.......................................(((((...(((((..........)))))...........(((....))).........................................((((.......))))..)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 M047
female body
 M061
embryo
 SRR060665
9_females_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060666
160_males_carcasses_total
......................................................................CTCTCTCTTTTCTCGCCGGCTGC.............................................................................................................................................................. 23 3 3 24.00 72 72 0 0 0 0 0 0 0 0
.....................................................................TCTCTCTCTTTTCTCGCCGGCT................................................................................................................................................................ 22 3 11 7.27 80 80 0 0 0 0 0 0 0 0
................................................................................................................................................AAACAACAACAACAACAAATATAACA................................................................................. 26 0 2 2.50 5 0 5 0 0 0 0 0 0 0
.................................................................................................................................................AACAACAACAACAACAAATATAACA................................................................................. 25 0 2 1.50 3 0 3 0 0 0 0 0 0 0
....................................................................................................................................................AACAACAACAACAAATATAACA................................................................................. 22 0 2 1.50 3 0 3 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CGCTGCCACGCCCATGCGTGCACCGTA.......... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................................AACAACAACAACAAATATAAC.................................................................................. 21 0 2 1.00 2 0 1 0 0 0 0 1 0 0
......................................................................CTCTCTCTTTTCTCGCTGGCTGC.............................................................................................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GAGCTATGCGGGCGCTGCCAC............................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................CATGCGTGCACCGTACAAGCTGC.. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................GCCCATGCGTGCACCGTAC......... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................AAAACAACAACAACAACAAATATAACA................................................................................. 27 0 2 0.50 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................AAACAACAACAACAACAAATATAAC.................................................................................. 25 0 2 0.50 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................ACAACAACAACAACAAATATAACA................................................................................. 24 0 2 0.50 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................AAAACAACAACAACAACAAATATAAC.................................................................................. 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................ACAACAACAACAAATATAACA................................................................................. 21 0 2 0.50 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................AAACAACAACAACAACAAATATAACC................................................................................. 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................ACACCAAAAACAACAACAACAAC........................................................................................... 23 0 3 0.33 1 0 0 0 0 0 0 0 1 0
.....................................................................TCTCTCTCTTTTCTCGCCGGCTG............................................................................................................................................................... 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................CAACAACAACAAATATAAC.................................................................................. 19 0 3 0.33 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................AAAACAACAACAACAACAAATAT..................................................................................... 23 0 4 0.25 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................AAACAAAAACAAAACACACC............................................................ 20 1 5 0.20 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................AACAACAACAACAACAAATATAA................................................................................... 23 0 5 0.20 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................AAACAACAACAACAAATATAAC.................................................................................. 22 1 6 0.17 1 0 0 0 0 0 0 0 1 0
................................................................................................................................................AAACAACAACAACAACAAATA...................................................................................... 21 0 12 0.17 2 0 2 0 0 0 0 0 0 0
...................................................................................................................................................CAACAACAACAACAAATATA.................................................................................... 20 0 14 0.14 2 0 2 0 0 0 0 0 0 0
.....................................................................................................................................................ACAACAACAACAAATATAA................................................................................... 19 0 7 0.14 1 0 0 0 0 0 0 0 0 1
.....................................................................TCTCTCTCTTTTCTCGCGGGCT................................................................................................................................................................ 22 3 7 0.14 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................CAACAACAACAACAAATAT..................................................................................... 19 0 20 0.10 2 0 2 0 0 0 0 0 0 0
................................................................................................................................................AAACAACAACAACAACAAAT....................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................ACAACAACAACAACAAATAT..................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................AAACAACAACAACAACAAA........................................................................................ 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

CTTTGTTAAATAAACGAGATGATTAGTGTACATTATATAAGGTAGAGAGAGAGAGAGTGGAAGAGAGAGAGAGAGAGAAAAAAGCGACAGACGTAAGTACGTTGAGAAAGGTACGTAAGGTAGAGAAAACGTGTGCGTGTGGTTTTTGTTGTTGTTGTTGTTTATATTGTGTTTGTTTTTGTTTTGTGTGAACAGAACGTCACTCGATACGCCCGCGACGGTGCGGGTACGCACGTGGCATGTTCGACGGC
**************************************************.......................................(((((...(((((..........)))))...........(((....))).........................................((((.......))))..)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 V047
embryo
 SRR060663
160_0-2h_embryos_total
 M061
embryo
 V053
head
 SRR060678
9x140_testes_total
 M047
female body
 SRR060670
9_testes_total
 SRR060659
Argentina_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060658
140_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR1106719
embryo_8-10h
.....................ATTAGTGTACATTCT....................................................................................................................................................................................................................... 15 1 9 0.67 6 6 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................AAAAAACATGTGCGTGTGGTT........................................................................................................... 21 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CCTCACTCGATGCGCCCG.................................... 18 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CAAGGTACGTGAGGTAGA............................................................................................................................... 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ACTCGATCGGCCCGCGCCG............................... 19 3 19 0.21 4 0 0 0 0 0 2 0 0 0 0 1 1 0
...................................................................................................................................................................................TGTTTTTAGTGATCAGAACGT................................................... 21 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AGGTGACGCGATACGCCCG.................................... 19 3 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0
...................................................................................................................TAAGGTAGAGGACACGTG...................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................TAGAGAGAAAGAGAGTTGAAGT........................................................................................................................................................................................... 22 3 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CCGGCGACGGTGCGTGTGCGC................... 21 3 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................GAAGAGAGAGAGAGAGAGAAA........................................................................................................................................................................... 21 0 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................AGAGAGAGAGAGTGGAAGG........................................................................................................................................................................................... 19 1 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................CCGTAAGTACGTTGA.................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:4903396-4903646 + dvi_8939 GAAACAATTTATTTGC---TCT------------------------ACT-A--ATCACATGTAATATAT----TCCATCT--------CTCTCT--------CTCTCACC----------------TTCTCTCTCTCT----------------------------------------------------------------------------------------------CTC---------TCTTTTTTCGCTGTCTGCATT--CATGCAACTCTTT--------------------------------------------------------------------------------------CCATGCA------TTCCAT-------------------------------------------CTCTTTTGCACA---CG---------------C--------------------------------------------------------------------------------ACACCAAAAACAACAACAACAA-------------------------------------------CAAATATAACACAAACAAAA-----A-----CAAAA-----CACA-------------------------------------------------------CT----------------------TGTCTTGCAGTGAGCT-------ATGCGGGCGCTGCCACGCC--CATGCGTGCACCGTACAAGCT------------------------------------------------------------------------------------------------------GCCG
droMoj3 scaffold_6473:113842-114210 - CAATTTG----TTTGC---TCT------------------------ACT-AAAATCACATGAAATACAT----TCGCTCTCTCTCTCT--------------CTCTCTCTCTATT----CATA------TCATA----------------CACTGTTTCTTCTTGCCTCTCTGTTCCTCTCCTTCGTCATATCGGACATTGTTTGTCCT----------------------TCTC---------TTTC-------TGTCTGC--C--CATATCCATCTCT--------------------------------------------------------------------------------------CACTCTCTTTCCCTTTGGTC-TATCTCCTTCTCTCTCCAACTGTCTC--TCCCT----CTCTGTCTTT--CACA---CGCAC------------------------TCGAAT----------------TGCAACCACATCA---------------------------------ATCAATCACATCAACATCCGAAA----------C-GATCGAC-------------AT-------------------------AAAAACAAAC-----CCGAT-TCCCCACA-------------------------------------------------------CT----------------------TGTCTTGCAGTGAGCT-------ATGCGGGCGGTGCCACGCC--CATGCGTACGCCGTTCAAGCC------------------------------------------------------------------------------------------------------GCAG
droGri2 scaffold_15081:2759080-2759295 - TTTG-------TTTGC---CTT-TGTA--------------------CT-A--ATCACAAGCAATATGT----TCTGTCT--------CCCTCT--------CGCTCCCC----------------CACTCTAACCCT-----------------------------------------------------------------------CTCT-------------------CTC---------TCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAT----CACTGCATTC--CATG---ACTAC------------------------TTGCAA----------------CACAATG---CACAACGATTAA------------------------AACAACAACAACAATAC-----------------------------------------------------------------AACAAAAAAC-----CCAAC--ATCCAAC-------------------------------------------------------CT----------------------TATCTTGCAGTGAGCT-------ATCCAC------------C--CTTGCGGACACCCTACAAATT------------------------------------------------------------------------------------------------------GCC-
droWil2 scf2_1100000004590:4306501-4306731 + GAATTG-----CAT--CGCC-TTTGCTCC-------T--CTCTAATACT-A--ATCACAGGTGATT--TTCCATTGCT--------CT--------------------------------------------CTCTTTCTCTCTCCCCCT-----------------------------------------------------------G--T-------------------TCCACATCC--------------------------------------T--------------------------------------------------------------------------------------TACTTTT------TT-----------------------------------------------CCTCTC--C------------------ATAAAC--ATAAACAA---------------------------A-----ACA-------------------AT------------AAAAACTACATAA--------------------ACACTTAAC-------------ACAATCA-------------------CCAC---CTACACCTGCCAAA-----TCTC-------------------------------------------------------CT----------------------TATATTGCAGTGAGCT-------ATGCAAATG---CCACGCC--TATGCGG---CCCTACATGAT------------------------------------------------------------------------------------------------------GACA
dp5 XL_group1e:10152943-10153217 + TTCCCTTTC--T-------CTCT---------------------------------------------------------------CT------------------CTCTCTG----------------TCTCT---------------------------------------------------------------------------TTCTATCTACCGATGCCTGTTGTCTC---------TTTCTATTCAATGCATATCTC--------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCC-TGAACATTCCACATGCCACATGC------------------------ACCACATACAACAA----------------ACAATCGACCAA-----------CAAATGACATTTGCAACCAACAAAAC-------------------TCGAAACCTAC-----ACGAAACATCCTGT-------------------------------------------------------TTTTTTTCCCTCCCGTTCCTTGCGTCTCTTGCAGTGAGCT-------ATGCCGGCGGCGCTGCAGGTCCAGGTGC----------AGGT-------------------------------------------G------GTGTT-------------------------G--------CCCTGCCGGTGGTGCGT
droPer2 scaffold_32:14098-14326 - TCCA-------TCT--CTCT-CT---------------------------------------------------------------CT--------------CTCTGTCTCTG----------------TCTCTCTC---------------------------------------------------------------------------T-------------------CTCTCATCCTTCCTTTGAATTGGAATCAC---------TCAGGTCT--------------------------------------------------------TGAAGCAAGAACCCGTTCTCTTAC--------------------------------------------------------------------------------CA---AG--------------------------------------------------C---------------------------AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAT-----ACGAGGGAGAAGAAGTAAATC--AA------AACAGCAGAAACACACAAAACCAACTCGACACCAATGAAAAATGTCACAAAGAGGTAAGCGCGGTAATC-------------AACATCATCATCAGTCGCATC--------ATCCGCCG
droAna3 scaffold_13117:2410540-2410696 - CACC-------TCT--CTCT-CT---------------------------------------------------------------CT--------------CTCTCTCTCTC-------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------CTC------TCTGGTGCTATCT--------------------CTTGC--TCCCTC----A----------C-------------------------------TTT-C-----------------------------C---------------------------------CGCCGAAACAAAGACAA-----------------------------------------------------------------ATCGACCAAC-----CCGAC-----TCCC-----------------------------------------------------C-TT----------------------TTACTTGCAGTGAGCT-------ATGCGGGCGCCGCCTCGCC--CATCCGC---CCCTACAAGGT------------------------------------------------------------------------------------------------------GACC
droBip1 scf7180000396359:119476-119708 - AATATTTTC--T-------CCCT---------------------------------------------------------------CTTTCTCT--------CTCTC-----G----------------TCCCTCTC---------------------------------------------------------------------------T-------------------TTC---------TTTCTGTTT---------------------------------TTTT------------------------------------------------------------------------------------------------------------------------------------------TCTTTC--C------------------ATGCCATGCC-----ACCGCAAC----------------TGCA----------ACTACTGCAACAACTACTGCAA-----------------ACA--ACAATGCAAACTA-----------CAGAGCGCAATTGTAAGCGAAATGAG-------------------CACAGAATTGT-----GAGAATTAGCTAAA-------------------------------------------------------TT----------------------TAATTTGCAATAGCCA-------AAGCCCGCCGCCCACAACGACCACGCCCATGCAGTAACAGCT--------------------------------------------------------------------------------------------------------GG
droKik1 scf7180000302621:180849-181042 - TCTA-------TCT--CTCT-GT---------------------------------------------------------------CT--------------TTCTTCCTCTATA----TATAACTCTCTTTCTCTCT----------------------------------------------------------------------------------------------CTC---------TCTCTATCTC-TGACTATGTG--TGTGTATCTCTCT--------------------------------------------------------------------------------------TTCTCTC------TCCCGT-------------------------------------------GTCTCCCA-----CAA---------------TT--ATTGTTTA---------------------------T-----ATA-------------------AA------------AAAAAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------CA----------------------TATTTTGCAATTGCCTCAGATCAACGGCAGCGGAGTTGCAGC--TG------CACAGCAGCAACA------------------------------------------------------------------------------------------------------GTCG
droFic1 scf7180000453882:157390-157632 - CTCT-------CCT--CACC-TCTCC-----------------------------------------------------------------------------TCTTCTCTTC----------------TCTTTC-----------------------------------------------------------------------------TT-------------------TTTTCTTCCCCTTTTGGTTT---------------------------------TGTTTCTTTCG-------------C----TTT----------------TCTCGTTGGCAGCTGCCGTTCGGCGAAGCCCAACAAGCG------TTGCAG-------------------------------------------C------------TA-----------------C------------------------------------CAGCGGCAAC---------------------------------AGTAGCAGCAGCAGTAGCAGCAG-------------------------------------------CAGCAGCAACAACATCAGCA-----G-----CAGCA-----GCAG-------------------------------------------------------CA----------------------GCAGCGGCGGCAAACG-------CAACAGCAGCAGCAGCGGC--ACCGCAACTACCGCCCCCGC------------------------------------------------------------------------------------------------------TGCCC
droEle1 scf7180000491043:57660-57868 + TCTC-------C----------------C------------------------------------------------------------------------CATCTCGCCCTG----------------TTTCTCTGT----------------------------------------------------------------------------------------------CTC---------TTTCCATTCGATGTCTTCCCG--CATATACACCTCTCGCTCTCATTTGT--------------------------------------------------------------------------------------TTTAAT-------------------------------------------GTTCCATT-----T--------------------------------GCAA----------------TCCAA------------------------------------------------ACATTACAATCCAAAC-----------AACCGACC-------------GCAAAAATCGG----CA----------ATCAACCAAC-----CCGAATCGAATCCC-------------------------------------------------------TT----------------------TACCTTGCAGTGAGCT-------ATGCGGGCGGAGTGCCACC--CATTCG---------------------------------------------------------------------------------------------------------------------GCCG
droRho1 scf7180000779333:867218-867437 - TCTT-------TCT--TTCT-CC-----C------------------------------------------------------------------------CATCTCCCTCTG----------------TTCCTCTGT----------------------------------------------------------------------------------------------CTC---------TTTCCATTTGATGTCTTTCCT--CATACGCACCTCT--------------------------------------------------------------------------------------CACTCAC------CTCGGT-------------------------------------------GTCATGTA-----CT-------------------------------------------------------------TTA---------------------------------ATTTACTACATCATAATCCGAACAA---C--AACAACCGACC-------------GCATAAA-------------------CCGGAACCAAC-----CCGAA-----TCCC-------------------------------------------------------TT----------------------TACCTTGCAGTGAGTT-------ATGCGGGCGGAGTACCACC--CATTCGC---CCTTTTAAGGT------------------------------------------------------------------------------------------------------GGC-
droBia1 scf7180000302421:1620354-1620586 - TCTT-------TCT--CTCT-TT-CTCCC-----------------------------------------------------------------A------CATCTGCCTCTG----------------TCCCTCTGT----------------------------------------------------------------------------------------------CTC---------TTTCCATTCGATGTCCTCCCG--CGCACACCCCTCT--------------------------------------------------------------------------------------CACTCAC------TCCGGT-------------------------------------------GTCCAATA-----TA-----------------C------------------------------------AAACATATCA---------------------------------ACTAACCACATCATTATCCGAACA-----------AACCGAC-------------GCA-AAA-------------------CCACAACCAAC-----CCGAA-----TCCC-------------------------------------------------------TT----------------------TGCCTTCCAGTGAGTT-------ACGGGGGCGGAGTGGCGCC--CATTCGC---GCCATCAAGAT--------------------------------------------------------------------------------GGCCGGAG----------------CT
droTak1 scf7180000414531:38474-38778 - ATTTG------TTTAT---ATAT-ATA------TTACATATATATT----T------------ATA-----------------------------------TATATATTTTCCTTT-TTTTTGTCTCTTTTTCTCTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTT----CCGTGTTTTT--CAAA---ACTTCCTGTCCGATGCACTGCT-----ACAAA-A---------------------A-----ATA-------------------------------------AA------------TACAA--ATACATAAATGCACCAC-------------ACA----CCGA---------------CAACAAAAAAA-----ACGAAAAATGTATACCCACAACACTGTGAAAAAAACAGTCGCAGTTCCGATTCGACAACGAGTGCTATCTC----------------------AATCTGCCGGACAATC-------ACA---------------------------------------------------------------------------AGCGGGTGAG--------TCACTTTCAACTTCTGCCAGCGACCTTGGGGGCGTC--------AT-CACTG
droEug1 scf7180000409110:1554615-1554848 - TTTT-------TCT--TTCT-TTTCCT-C------------------------------------------------------------------------CATTTGTCTCTGTT---------------TTCTCTGT----------------------------------------------------------------------------------------------CTC---------TTTCCAATCGATGTCTTCCTGTTCATATACACCTCT--------------------------------------------------------------------------------------CACTCAC------TTTGGT-------------------------------------------GTCATATA-----TA-----------------T----ATA------------------------------TATATATAT---------------------------------ATTAACTACATCATTATCCGAACAA---------AACCTGCC-------------ACAAAAA-------------------CCACAACCAAC-----CCGAA-----TCCC-----------------------------------------------------TCTT----------------------AACCTTCCAGTGAACT-------ATGCGGGTGGAGTTGCCCC--CGTTCGG---ACTTTTAAGGT--------------------------------------------------------------------------------------------------------GG
dm3 chrX:15844188-15844394 - GATAAAGGTTGGTTGC---CCC-TCTAACTAGCTAAC------------T-----------------------------------------------------------TATG----------------TAACT---------------------------------------------------------------------------TACTA-------------------CCATCTTGATCTTGTGATCT---------------------------------TATTTCTTAAGGGTCTTGACTTCACATCGTTTTCCTATTTACTATTAC----------------------GT-----------------------------AATCA--------------------CTTGC--ACATCT----C----------T-------------------------------TTT-T-----------------------------A---------------------------------AACAACAACAACAACAACGACAA-------------------------------------------CAACTAAAACAACAACAACAACAAC----------A-----ACAA-------------------------------------------------------TT----------------------TGCATTGTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 x:15015898-15016112 - GATAAAGGTTGGTTGC---CCC-TCTAACTAACTCAC------------T-----------------------------------------------------------TATG----------------TAACT---------------------------------------------------------------------------TACTA-------------------CCATCTTGATCTTGTGGTCT---------------------------------TATTTCTTAAGGGTCTTGACTTCACATCGTTTTCCTATTTACTATTAC----------------------GT-----------------------------AATCA--------------------CTTGC--ACATCT----C----------T-------------------------------TTT-T-----------------------------A---------------------------------AACAAC------AACAACTACAA-------------------------------------------CAACTAAAACAACAACAACAACAAC------------------AA-------------------------------------------------------CT----------------------TGCATTGTAATA------------GA------------------------T---GCGTTGACATT--------------------------------------------------------------------------------------------------------GC
droSec2 scaffold_21:840614-840838 - CCGT----------------------------------------------------------------------------------------------------CTTCCTCTGTTTAAATCCGACTGCCTTCCTCTGT----------------------------------------------------------------------------------------------CTC---------TTTCCATTCGATGTCTCCCCG--TATATACACCTCT--------------------------------------------------------------------------------------CACTCAC------TCTGGT-------------------------------------------GACGTGTA-----TA-----------------C---------------------------------------CTAATTA---------------------------------CCGAACCACATCATTATCCAAAA----------CAACTTGCT-------------GCAAAAA-------------------CCACAACCAAC-----CCGAA-----TCCC-------------------------------------------------------TT----------------------TACCTTCCAGTGAGTT-------ATGGGGGCGGAGCTTCGCA--AATTCGC---ACCTTAAAGGT-----------------------------------------------------------------------------------------------------AGCCG
droYak3 X:7365391-7365657 - GAAACTCTT--TCT--ATTT-TC-TTC-C---------------------C-------------------------------------------ATCTTTCTATCTTCCTCTGTTC---TCCGACCGCCTTCCTCTGT----------------------------------------------------------------------------------------------CTC---------TTTCCATTCGATGTCTCCCCG--CATATACACCTCT--------------------------------------------------------------------------------------CACTCAC------TCTGGTG-TAT--------------------------------------GTCGTGTA-----TG-----------------C---------------------------------------CTAATTA-------------------------ACCAACCAACTAACCACAACATTATCCAAACAA---CCAAACAACTTGCT-------------GCGAAAA-------------------CCACAACCAAC-----CCGAA-----TCCC-------------------------------------------------------TT----------------------TACCTTCCAGTGAGTT-------ATGCGGGCGGAGCTGCTCC--AATTCGC---GCCTTTAAGGT--------------------------------------------------------------------------------------------------------GG
droEre2 scaffold_4690:13780891-13781128 + CTCTT------TCT--C--T-TTTCTTCC------------------------------------------------------------------------AATCTTCCTCTGTTT---TCCGGCTGCCTTCCCTTGT----------------------------------------------------------------------------------------------CTC---------TTTCCATTCGATGTCTCCCCG--TATACACACCTCT--------------------------------------------------------------------------------------CACTCAC------TCTGGT-------------------------------------------GTCGTGTA-----AA-----------------C---------------------------------------CTAATTA---------------------------------ACCAACCACATCATTATCCAAAC-----------AACTTGCT-------------GCAAAAA-------------------CCACAACCAAC-----CCGAA-----TCCC-------------------------------------------------------TT----------------------TGCCTTCCAGTGAGTT-------ATGCGGGCGGCGCTGCACC--AATTCGC---GCCTTTAAGAT-----------------------------------------------------------------------------------------------------TGCCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GAAACAATTTATTTGC---TCT------------------------ACT-A--ATCACATGTAATATAT----TCCATCT--------CTCTCT--------CTCTCACC----------------TTCTCTCTCTCT----------------------------------------------------------------------------------------------CTC---------TCTTTTTTCGCTGTCTGCATT--CATGCAACTCTTT--------------------------------------------------------------------------------------CCATGCA------TTCCAT-------------------------------------------CTCTTTTGCACA---CG---------------C--------------------------------------------------------------------------------ACACCAAAAACAACAACAACAA-------------------------------------------CAAATATAACACAAACAAAA-----A-----CAAAA-----CACA-------------------------------------------------------CT----------------------TGTCTTGCAGTGAGCT-------ATGCGGGCGCTGCCACGCC--CATGCGTGCACCGTACAAGCT------------------------------------------------------------------------------------------------------GCCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACAACAACAA-------------------------------------------CAAATATAACA............................................................................................................................................................................................................................................................................................2622.505005000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAA-------------------------------------------CAAATATAACA............................................................................................................................................................................................................................................................................................2521.503003000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAA-------------------------------------------CAAATATAACA............................................................................................................................................................................................................................................................................................2221.503003000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGCCACGCC--CATGCGTGCACCGTA................................................................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAA-------------------------------------------CAAATATAAC.............................................................................................................................................................................................................................................................................................2121.002001000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCT-------ATGCGGGCGCTGCCAC....................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCGTGCACCGTACAAGCT------------------------------------------------------------------------------------------------------GC..2311.001000000000000000100000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCC--CATGCGTGCACCGTAC...............................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAACAACAACAA-------------------------------------------CAAATATAACA............................................................................................................................................................................................................................................................................................2720.501001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACAACAACAA-------------------------------------------CAAATATAAC.............................................................................................................................................................................................................................................................................................2520.501001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAA-------------------------------------------CAAATATAACA............................................................................................................................................................................................................................................................................................2420.501001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAACAACAACAA-------------------------------------------CAAATATAAC.............................................................................................................................................................................................................................................................................................2620.501001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAA-------------------------------------------CAAATATAACA............................................................................................................................................................................................................................................................................................2120.501001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACAACAACAA-------------------------------------------CAAATATAACC............................................................................................................................................................................................................................................................................................2620.501001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCAAAAACAACAACAACAA-------------------------------------------C......................................................................................................................................................................................................................................................................................................2330.331000000000000000000010000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAA-------------------------------------------CAAATATAAC.............................................................................................................................................................................................................................................................................................1930.331000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAACAACAACAA-------------------------------------------CAAATAT................................................................................................................................................................................................................................................................................................2340.251001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAAAA-----A-----CAAAA-----CACA-------------------------------------------------------CC----------------------...........................................................................................................................................................................2050.201000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAA-------------------------------------------CAAATATAA..............................................................................................................................................................................................................................................................................................2350.201001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACAACAACAA-------------------------------------------CAAATA.................................................................................................................................................................................................................................................................................................21120.172002000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAA-------------------------------------------CAAATATA...............................................................................................................................................................................................................................................................................................20140.142002000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAA-------------------------------------------CAAATATAA..............................................................................................................................................................................................................................................................................................1970.141000000000000000010000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAA-------------------------------------------CAAATAT................................................................................................................................................................................................................................................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACAACAACAA-------------------------------------------CAAAT..................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAA-------------------------------------------CAAATAT................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACAACAACAA-------------------------------------------CAAA...................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
CAATTTG----TTTGC---TCT------------------------ACT-AAAATCACATGAAATACAT----TCGCTCTCTCTCTCT--------------CTCTCTCTCTATT----CATA------TCATA----------------CACTGTTTCTTCTTGCCTCTCTGTTCCTCTCCTTCGTCATATCGGACATTGTTTGTCCT----------------------TCTC---------TTTC-------TGTCTGC--C--CATATCCATCTCT--------------------------------------------------------------------------------------CACTCTCTTTCCCTTTGGTC-TATCTCCTTCTCTCTCCAACTGTCTC--TCCCT----CTCTGTCTTT--CACA---CGCAC------------------------TCGAAT----------------TGCAACCACATCA---------------------------------ATCAATCACATCAACATCCGAAA----------C-GATCGAC-------------AT-------------------------AAAAACAAAC-----CCGAT-TCCCCACA-------------------------------------------------------CT----------------------TGTCTTGCAGTGAGCT-------ATGCGGGCGGTGCCACGCC--CATGCGTACGCCGTTCAAGCC------------------------------------------------------------------------------------------------------GCAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TTTG-------TTTGC---CTT-TGTA--------------------CT-A--ATCACAAGCAATATGT----TCTGTCT--------CCCTCT--------CGCTCCCC----------------CACTCTAACCCT-----------------------------------------------------------------------CTCT-------------------CTC---------TCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAT----CACTGCATTC--CATG---ACTAC------------------------TTGCAA----------------CACAATG---CACAACGATTAA------------------------AACAACAACAACAATAC-----------------------------------------------------------------AACAAAAAAC-----CCAAC--ATCCAAC-------------------------------------------------------CT----------------------TATCTTGCAGTGAGCT-------ATCCAC------------C--CTTGCGGACACCCTACAAATT------------------------------------------------------------------------------------------------------GCC-SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GAATTG-----CAT--CGCC-TTTGCTCC-------T--CTCTAATACT-A--ATCACAGGTGATT--TTCCATTGCT--------CT--------------------------------------------CTCTTTCTCTCTCCCCCT-----------------------------------------------------------G--T-------------------TCCACATCC--------------------------------------T--------------------------------------------------------------------------------------TACTTTT------TT-----------------------------------------------CCTCTC--C------------------ATAAAC--ATAAACAA---------------------------A-----ACA-------------------AT------------AAAAACTACATAA--------------------ACACTTAAC-------------ACAATCA-------------------CCAC---CTACACCTGCCAAA-----TCTC-------------------------------------------------------CT----------------------TATATTGCAGTGAGCT-------ATGCAAATG---CCACGCC--TATGCGG---CCCTACATGAT------------------------------------------------------------------------------------------------------GACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTGCCAAA-----TCTC-------------------------------------------------------CT----------------------TATATTGC...................................................................................................................................................................2611.00100010
dp5
TTCCCTTTC--T-------CTCT---------------------------------------------------------------CT------------------CTCTCTG----------------TCTCT---------------------------------------------------------------------------TTCTATCTACCGATGCCTGTTGTCTC---------TTTCTATTCAATGCATATCTC--------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCC-TGAACATTCCACATGCCACATGC------------------------ACCACATACAACAA----------------ACAATCGACCAA-----------CAAATGACATTTGCAACCAACAAAAC-------------------TCGAAACCTAC-----ACGAAACATCCTGT-------------------------------------------------------TTTTTTTCCCTCCCGTTCCTTGCGTCTCTTGCAGTGAGCT-------ATGCCGGCGGCGCTGCAGGTCCAGGTGC----------AGGT-------------------------------------------G------GTGTT-------------------------G--------CCCTGCCGGTGGTGCGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-------ATGCCGGCGGCGCTGCG...................................................................................................................................1911.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTT-------------------------G--------CCCTGCCGGTGGTGCG.2211.0010100000000
droPer2
TCCA-------TCT--CTCT-CT---------------------------------------------------------------CT--------------CTCTGTCTCTG----------------TCTCTCTC---------------------------------------------------------------------------T-------------------CTCTCATCCTTCCTTTGAATTGGAATCAC---------TCAGGTCT--------------------------------------------------------TGAAGCAAGAACCCGTTCTCTTAC--------------------------------------------------------------------------------CA---AG--------------------------------------------------C---------------------------AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAT-----ACGAGGGAGAAGAAGTAAATC--AA------AACAGCAGAAACACACAAAACCAACTCGACACCAATGAAAAATGTCACAAAGAGGTAAGCGCGGTAATC-------------AACATCATCATCAGTCGCATC--------ATCCGCCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CACC-------TCT--CTCT-CT---------------------------------------------------------------CT--------------CTCTCTCTCTC-------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------CTC------TCTGGTGCTATCT--------------------CTTGC--TCCCTC----A----------C-------------------------------TTT-C-----------------------------C---------------------------------CGCCGAAACAAAGACAA-----------------------------------------------------------------ATCGACCAAC-----CCGAC-----TCCC-----------------------------------------------------C-TT----------------------TTACTTGCAGTGAGCT-------ATGCGGGCGCCGCCTCGCC--CATCCGC---CCCTACAAGGT------------------------------------------------------------------------------------------------------GACCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AATATTTTC--T-------CCCT---------------------------------------------------------------CTTTCTCT--------CTCTC-----G----------------TCCCTCTC---------------------------------------------------------------------------T-------------------TTC---------TTTCTGTTT---------------------------------TTTT------------------------------------------------------------------------------------------------------------------------------------------TCTTTC--C------------------ATGCCATGCC-----ACCGCAAC----------------TGCA----------ACTACTGCAACAACTACTGCAA-----------------ACA--ACAATGCAAACTA-----------CAGAGCGCAATTGTAAGCGAAATGAG-------------------CACAGAATTGT-----GAGAATTAGCTAAA-------------------------------------------------------TT----------------------TAATTTGCAATAGCCA-------AAGCCCGCCGCCCACAACGACCACGCCCATGCAGTAACAGCT--------------------------------------------------------------------------------------------------------GGSizeHit CountTotal NormTotal
No Reads
droKik1
TCTA-------TCT--CTCT-GT---------------------------------------------------------------CT--------------TTCTTCCTCTATA----TATAACTCTCTTTCTCTCT----------------------------------------------------------------------------------------------CTC---------TCTCTATCTC-TGACTATGTG--TGTGTATCTCTCT--------------------------------------------------------------------------------------TTCTCTC------TCCCGT-------------------------------------------GTCTCCCA-----CAA---------------TT--ATTGTTTA---------------------------T-----ATA-------------------AA------------AAAAAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------CA----------------------TATTTTGCAATTGCCTCAGATCAACGGCAGCGGAGTTGCAGC--TG------CACAGCAGCAACA------------------------------------------------------------------------------------------------------GTCGSizeHit CountTotal NormTotal
No Reads
droFic1
CTCT-------CCT--CACC-TCTCC-----------------------------------------------------------------------------TCTTCTCTTC----------------TCTTTC-----------------------------------------------------------------------------TT-------------------TTTTCTTCCCCTTTTGGTTT---------------------------------TGTTTCTTTCG-------------C----TTT----------------TCTCGTTGGCAGCTGCCGTTCGGCGAAGCCCAACAAGCG------TTGCAG-------------------------------------------C------------TA-----------------C------------------------------------CAGCGGCAAC---------------------------------AGTAGCAGCAGCAGTAGCAGCAG-------------------------------------------CAGCAGCAACAACATCAGCA-----G-----CAGCA-----GCAG-------------------------------------------------------CA----------------------GCAGCGGCGGCAAACG-------CAACAGCAGCAGCAGCGGC--ACCGCAACTACCGCCCCCGC------------------------------------------------------------------------------------------------------TGCCCSizeHit CountTotal NormTotal
No Reads
droEle1
TCTC-------C----------------C------------------------------------------------------------------------CATCTCGCCCTG----------------TTTCTCTGT----------------------------------------------------------------------------------------------CTC---------TTTCCATTCGATGTCTTCCCG--CATATACACCTCTCGCTCTCATTTGT--------------------------------------------------------------------------------------TTTAAT-------------------------------------------GTTCCATT-----T--------------------------------GCAA----------------TCCAA------------------------------------------------ACATTACAATCCAAAC-----------AACCGACC-------------GCAAAAATCGG----CA----------ATCAACCAAC-----CCGAATCGAATCCC-------------------------------------------------------TT----------------------TACCTTGCAGTGAGCT-------ATGCGGGCGGAGTGCCACC--CATTCG---------------------------------------------------------------------------------------------------------------------GCCGSizeHit CountTotal NormTotal
No Reads
droRho1
TCTT-------TCT--TTCT-CC-----C------------------------------------------------------------------------CATCTCCCTCTG----------------TTCCTCTGT----------------------------------------------------------------------------------------------CTC---------TTTCCATTTGATGTCTTTCCT--CATACGCACCTCT--------------------------------------------------------------------------------------CACTCAC------CTCGGT-------------------------------------------GTCATGTA-----CT-------------------------------------------------------------TTA---------------------------------ATTTACTACATCATAATCCGAACAA---C--AACAACCGACC-------------GCATAAA-------------------CCGGAACCAAC-----CCGAA-----TCCC-------------------------------------------------------TT----------------------TACCTTGCAGTGAGTT-------ATGCGGGCGGAGTACCACC--CATTCGC---CCTTTTAAGGT------------------------------------------------------------------------------------------------------GGC-SizeHit CountTotal NormTotal
No Reads
droBia1
TCTT-------TCT--CTCT-TT-CTCCC-----------------------------------------------------------------A------CATCTGCCTCTG----------------TCCCTCTGT----------------------------------------------------------------------------------------------CTC---------TTTCCATTCGATGTCCTCCCG--CGCACACCCCTCT--------------------------------------------------------------------------------------CACTCAC------TCCGGT-------------------------------------------GTCCAATA-----TA-----------------C------------------------------------AAACATATCA---------------------------------ACTAACCACATCATTATCCGAACA-----------AACCGAC-------------GCA-AAA-------------------CCACAACCAAC-----CCGAA-----TCCC-------------------------------------------------------TT----------------------TGCCTTCCAGTGAGTT-------ACGGGGGCGGAGTGGCGCC--CATTCGC---GCCATCAAGAT--------------------------------------------------------------------------------GGCCGGAG----------------CTSizeHit CountTotal NormTotal
No Reads
droTak1
ATTTG------TTTAT---ATAT-ATA------TTACATATATATT----T------------ATA-----------------------------------TATATATTTTCCTTT-TTTTTGTCTCTTTTTCTCTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTT----CCGTGTTTTT--CAAA---ACTTCCTGTCCGATGCACTGCT-----ACAAA-A---------------------A-----ATA-------------------------------------AA------------TACAA--ATACATAAATGCACCAC-------------ACA----CCGA---------------CAACAAAAAAA-----ACGAAAAATGTATACCCACAACACTGTGAAAAAAACAGTCGCAGTTCCGATTCGACAACGAGTGCTATCTC----------------------AATCTGCCGGACAATC-------ACA---------------------------------------------------------------------------AGCGGGTGAG--------TCACTTTCAACTTCTGCCAGCGACCTTGGGGGCGTC--------AT-CACTGSizeHit CountTotal NormTotal
No Reads
droEug1
TTTT-------TCT--TTCT-TTTCCT-C------------------------------------------------------------------------CATTTGTCTCTGTT---------------TTCTCTGT----------------------------------------------------------------------------------------------CTC---------TTTCCAATCGATGTCTTCCTGTTCATATACACCTCT--------------------------------------------------------------------------------------CACTCAC------TTTGGT-------------------------------------------GTCATATA-----TA-----------------T----ATA------------------------------TATATATAT---------------------------------ATTAACTACATCATTATCCGAACAA---------AACCTGCC-------------ACAAAAA-------------------CCACAACCAAC-----CCGAA-----TCCC-----------------------------------------------------TCTT----------------------AACCTTCCAGTGAACT-------ATGCGGGTGGAGTTGCCCC--CGTTCGG---ACTTTTAAGGT--------------------------------------------------------------------------------------------------------GGSizeHit CountTotal NormTotal
No Reads
dm3
GATAAAGGTTGGTTGC---CCC-TCTAACTAGCTAAC------------T-----------------------------------------------------------TATG----------------TAACT---------------------------------------------------------------------------TACTA-------------------CCATCTTGATCTTGTGATCT---------------------------------TATTTCTTAAGGGTCTTGACTTCACATCGTTTTCCTATTTACTATTAC----------------------GT-----------------------------AATCA--------------------CTTGC--ACATCT----C----------T-------------------------------TTT-T-----------------------------A---------------------------------AACAACAACAACAACAACGACAA-------------------------------------------CAACTAAAACAACAACAACAACAAC----------A-----ACAA-------------------------------------------------------TT----------------------TGCATTGTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................TATTAC----------------------GT-----------------------------AATCA--------------------CTTGC--ACATCT----C----------T-------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAACGACAA-------------------------------------------CAA....................................................................................................................................................................................................................................................................................................2240.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAACAACAACAACAAC----------A-----ACA...........................................................................................................................................................................................................................................................24170.1830000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAACGACAA-------------------------------------------CA.....................................................................................................................................................................................................................................................................................................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAAC----------A-----AC............................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAACGACAA-------------------------------------------C......................................................................................................................................................................................................................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACGACAA-------------------------------------------CA.....................................................................................................................................................................................................................................................................................................2090.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAACAAC----------A-----A.............................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAACGACA...................................................................................................................................................................................................................................................................................................................................................20150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACAACAACAACAAC----------A-----AC............................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACAACAACAACAAC----------A-----ACA...........................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAACAACG......................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GATAAAGGTTGGTTGC---CCC-TCTAACTAACTCAC------------T-----------------------------------------------------------TATG----------------TAACT---------------------------------------------------------------------------TACTA-------------------CCATCTTGATCTTGTGGTCT---------------------------------TATTTCTTAAGGGTCTTGACTTCACATCGTTTTCCTATTTACTATTAC----------------------GT-----------------------------AATCA--------------------CTTGC--ACATCT----C----------T-------------------------------TTT-T-----------------------------A---------------------------------AACAAC------AACAACTACAA-------------------------------------------CAACTAAAACAACAACAACAACAAC------------------AA-------------------------------------------------------CT----------------------TGCATTGTAATA------------GA------------------------T---GCGTTGACATT--------------------------------------------------------------------------------------------------------GCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
CCGT----------------------------------------------------------------------------------------------------CTTCCTCTGTTTAAATCCGACTGCCTTCCTCTGT----------------------------------------------------------------------------------------------CTC---------TTTCCATTCGATGTCTCCCCG--TATATACACCTCT--------------------------------------------------------------------------------------CACTCAC------TCTGGT-------------------------------------------GACGTGTA-----TA-----------------C---------------------------------------CTAATTA---------------------------------CCGAACCACATCATTATCCAAAA----------CAACTTGCT-------------GCAAAAA-------------------CCACAACCAAC-----CCGAA-----TCCC-------------------------------------------------------TT----------------------TACCTTCCAGTGAGTT-------ATGGGGGCGGAGCTTCGCA--AATTCGC---ACCTTAAAGGT-----------------------------------------------------------------------------------------------------AGCCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GAAACTCTT--TCT--ATTT-TC-TTC-C---------------------C-------------------------------------------ATCTTTCTATCTTCCTCTGTTC---TCCGACCGCCTTCCTCTGT----------------------------------------------------------------------------------------------CTC---------TTTCCATTCGATGTCTCCCCG--CATATACACCTCT--------------------------------------------------------------------------------------CACTCAC------TCTGGTG-TAT--------------------------------------GTCGTGTA-----TG-----------------C---------------------------------------CTAATTA-------------------------ACCAACCAACTAACCACAACATTATCCAAACAA---CCAAACAACTTGCT-------------GCGAAAA-------------------CCACAACCAAC-----CCGAA-----TCCC-------------------------------------------------------TT----------------------TACCTTCCAGTGAGTT-------ATGCGGGCGGAGCTGCTCC--AATTCGC---GCCTTTAAGGT--------------------------------------------------------------------------------------------------------GGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CTCTT------TCT--C--T-TTTCTTCC------------------------------------------------------------------------AATCTTCCTCTGTTT---TCCGGCTGCCTTCCCTTGT----------------------------------------------------------------------------------------------CTC---------TTTCCATTCGATGTCTCCCCG--TATACACACCTCT--------------------------------------------------------------------------------------CACTCAC------TCTGGT-------------------------------------------GTCGTGTA-----AA-----------------C---------------------------------------CTAATTA---------------------------------ACCAACCACATCATTATCCAAAC-----------AACTTGCT-------------GCAAAAA-------------------CCACAACCAAC-----CCGAA-----TCCC-------------------------------------------------------TT----------------------TGCCTTCCAGTGAGTT-------ATGCGGGCGGCGCTGCACC--AATTCGC---GCCTTTAAGAT-----------------------------------------------------------------------------------------------------TGCCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGGCGGCGCTGCACC--AATTCGC---GC...................................................................................................................2811.0010100000

Generated: 05/17/2015 at 05:06 AM