ID:

dvi_8905

 Coordinate:

scaffold_12928:4767465-4767615 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.2 -6.0 -6.0

Flybase annnotation

CDS [Dvir\GJ16929-cds]; exon [dvir_GLEANR_17435:1]; intron [Dvir\GJ16929-in]

Repeatable elements

NameClassFamilyStrand
GA-richLow_complexityLow_complexity+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGCTGCGCACGCTGGCGAGCAGCGCATCGCCGCTGCCGGAACTGACACAGGTAAGAGAAACAAACAGAGAGCGAGAGCGAAAGCGAGAGAGAGAGAGACAGAGCACCAGAGTGAGAGAGAGTGAGGGCGGGAGGAAGGGAGGCAGCGAGAGTGTGAGTCTTGGCTCTGTGGTGAGTTGACTTTGTGGCCACCATGGCCCAATCGCCGCTTTGCAAATGGTGGTTGCAAAATTAACCGCTATGCACAGTTGT
**************************************************************************************************************************........(((.....(((((.(((....)))..)))))..)))************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 SRR060673
9_ovaries_total
 GSM1528803
follicle cells		 SRR060683
160_testes_total
 V053
head
 V047
embryo
 M028
head
 M061
embryo
 SRR060665
9_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060670
9_testes_total
 SRR1106729
mixed whole adult body
 SRR060658
140_ovaries_total
 SRR060679
140x9_testes_total
 SRR060689
160x9_testes_total
..........................................................................................................................GAGGGCGGGAGGAAGGGA............................................................................................................... 18 0 1 3.00 3 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CATCGCCGCTGCCGGAACT................................................................................................................................................................................................................ 19 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................AGCGCATCGCCGCTGCCGGAACTGACAC........................................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GAGGAAGGGAGGCAGCGAGAG.................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............GCCGAGCAGCGAATCGCCGCT......................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CAGAGTGAGAGAGAGTGAGGGC........................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................GCACCAGAGTGAGAGAGAG.................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CGAGAGTGTGAGTCTTGGCTC..................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................CGCATCGCCGCTGCCGGAACTGACAC........................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................ATCGCATCGCCGCTGCCGGAACC................................................................................................................................................................................................................ 23 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TTGCAAAATTAACCGCTATGC........ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................AGCGCATCGCCGCTGCCGGAAC................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GAGGGCGGGAGGAAGGGAG.............................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................TGTGAGTCTTGGCTCTGTGGTGAGT........................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................GCACCAGAGTGAGAGAGAGTGA............................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GAGGGCGGGAGGAAGGGAGG............................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TGACTTTGTGGCCACCATGGC...................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GAGGGCGGGAGGAAGGGAGGCA........................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................CGCTGCCGGAACTGACACAG......................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...TGCGCACGCTGGCGAGCAG..................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......GCACGCTGGCGAGCAGCGCATCGCCGCT......................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AAATTAACCGCTATGCACAGT... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................AGCAGCGCATCGCCGCTGCCGGAACT................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GCATCGCCGCTGCCGGAACTG............................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TGGCACTGTGGTGAGTTGGCTGTG................................................................... 24 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................AGAGAGAGAGACAGAGCACCA............................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTGGCTCTGTGGTGAGTTGAC....................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................AGCGCATCGCCGCGGCCGGAAC................................................................................................................................................................................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGCACAATAAACCACTATGCAC...... 22 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TGGCACTGTGGTGAGCTGGCT...................................................................... 21 3 8 0.25 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GAGGGGGGGAGGAAGGGAG.............................................................................................................. 19 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................TGGCAGTGTGGTGAGTTGGCT...................................................................... 21 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TGGCTGTGTGGTGAGGTGGCT...................................................................... 21 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TGGGTCTGTGGTGAGGTGTC....................................................................... 20 3 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................CCGAAACCGACACAGGT....................................................................................................................................................................................................... 17 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................GGAGCGCATCGCGGCTGGCG..................................................................................................................................................................................................................... 20 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GGGGGCGGGAGGAAGGTA............................................................................................................... 18 2 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................GAAAGCGAGAGAGAGAGAGA......................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................ATAGAGCACCAGACTGCGA....................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................CGGGAGGAAGGATGGCAC.......................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TGGCCGTGTGGTGAGCTGA........................................................................ 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TCTGGGTTCTGTGGGGAGT........................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................GAAAGCGAGAGAGAGAGA........................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................GAGCCGGAGCGAAAGCGAG.................................................................................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GCGACGCGTGCGACCGCTCGTCGCGTAGCGGCGACGGCCTTGACTGTGTCCATTCTCTTTGTTTGTCTCTCGCTCTCGCTTTCGCTCTCTCTCTCTCTGTCTCGTGGTCTCACTCTCTCTCACTCCCGCCCTCCTTCCCTCCGTCGCTCTCACACTCAGAACCGAGACACCACTCAACTGAAACACCGGTGGTACCGGGTTAGCGGCGAAACGTTTACCACCAACGTTTTAATTGGCGATACGTGTCAACA
*************************************************************************************........(((.....(((((.(((....)))..)))))..)))************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060674
9x140_ovaries_total
 SRR060687
9_0-2h_embryos_total
 SRR060678
9x140_testes_total
 V053
head
 SRR060684
140x9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 M027
male body		 GSM1528803
follicle cells		 SRR060670
9_testes_total
 M061
embryo
 SRR060689
160x9_testes_total
 V116
male body
.................................................................................................................................................................................................TCCGGGTTAGCGGCGAAACGT..................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GAGACACCACTCAACTGAAAC................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................TCTTTGTTTGTCTCTCGCTCT............................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ACCGGGTTAGCGGCGAAACGTT.................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TCTCTTTGTTTGTCTCTCGCTC................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................CTCGTGGTCTCACTCTCTCTC.................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGGCGGAACGTTTACCACCAA........................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................CGCTCTGTCTCGTGGTCTC............................................................................................................................................ 19 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TTAAAGTGGCGATAGGTGTCA... 21 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............TCCGATCCTCGCGTAGCGGC........................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................GGGGCGATGGCCTTGACGGT............................................................................................................................................................................................................ 20 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................GCTCTCAATGTCAGAACCG....................................................................................... 19 3 14 0.14 2 0 0 0 0 0 0 0 2 0 0 0 0 0
..............CGGTCTTCGCGTAGCGGC........................................................................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................TTAGCGGCGACGGCCTTGGCG.............................................................................................................................................................................................................. 21 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............TCCGGTCCTCGCGTAGCGGC........................................................................................................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............CGGTCCTCGCGTAGCGGC........................................................................................................................................................................................................................... 18 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............CCGGTCATCGCGTAGCGGCC.......................................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................GGGGTAGCGGTGAAACCTT.................................... 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................CCGTCCATCGCTCTCACAGT............................................................................................... 20 3 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................TCGCTTTCGTTCTCTCTCTC............................................................................................................................................................ 20 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................TTCAAGTGGCGATAGGTGT..... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................GGAGGTACCGAGTTTGCG.............................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:4767415-4767665 + dvi_8905 C---------------------GCT--------------------GC-----------GCACGCTGGCGAGCAGCGCATCGCCGCT------GCCGGAACTGACACAGG-------------------------------TAAGAGAA----ACAAACAGAGAGC---------G-------A----G----A--GCGA------AA------------------GC-------------GAGAG----AGAGAGAGACAGAGCACCAGAGTGAGAG--------------AGAGTGAGGGCGGGAGGAAGGGA------GGCAGC--------------------------------------------------------------------------------------------------------------GAGAGTGTGAG-------------------T-----------------------------------------CTTGGCT-CTGTGGTGAGTTGACTTTGTGGCCACC--ATGGCCCAATC-GCCGCTTTGCAAATGGTGGTTGCAAAATTAACCGCTATGCACAGTTGT
droMoj3 scaffold_6308:154588-154751 + T---------------------GGT--------------------GC-----------GAACGTTGGCAAGCAGCGCATCGCCGCT------GCCGGAACTGACACAGG-------------------------------TAAGA------------------------------------------G----C--------------AACAAAGCAAGCTAGAG--C-------------------GAG------------GGAGTGGGA----GAGCGAGCAAGAGAGCAAG----CGG-------TACGAGCAGGGGTGAGAGG--------------------------------------------------------------------------------------------------------------GAGCAGGAG--TGTGTG-------------C-----------------------------------------ATTGGTT-GCGTGGTGGAT-----------------T------------------------------------------------------------
droGri2 scaffold_15252:16928551-16928765 - G---------------------CGGCT-GCTGGATTCTGGACATA----------------------------------------A------GAC----AGA-----------------------------------------ACGA----GAGAG--------A-TAGAGAGACAGGG---A----G----A--AAGA------GA------------------GAGAGAGAGAGAG-----AG--AA------------AGAAAAAGAGAAAGAG--------------AGAGAGAGAGAAAAAGAGAAAGA------GAGAGA--------------------------------------------------------------------------------------------------------------GAGAGAGAGAGAACATGTAATGGCCTTGGTCTTGTGGCTTTCA--------------------------------------------GCGTCAACTCTGT----------------------------TTCAGATAGTAAGTAGCAACCGCACTTCAATG------TAT
droWil2 scf2_1100000004909:11057136-11057290 - C---------------------CAA--------------------CA----------------------------------------------------AGAG-------------------------------------CAAAGGAGACAAACGC--------A-----CACA--A-------AGAG----A----GACAGCGAAC---------------------------------GAGAG----AGAGAG------AGAGAGAGC----AAGTG------------A----------------------------------------GTGGG------------GGAAAGAGAC------------------------------GAATGAAGGGAGG------------------------GAGG-GAGG-GAGGGGGGCCGA-------------------------CTTTGGGCATAGAGGGTAGCATTGCCTTTGT--------------------------------------TGC------------------------------------------------------------
dp5 XL_group1e:1366205-1366326 + T---------------------GAT--------------------AGAGATGAC-------------------------------A------GAG----A--------------------------------------------TGA----TAGAG--------A-GAGAGAGAGAGAG---A----G----A--GAGA------GA------------------GAGAGAGAGAGAT-----AG--GG------------AGAGGGATAGAGAGAG--------------AGAGAGAGGGAGAGAGAGAGAGA------GGGGGA--------------------------------------------------------------------------------------------------------------GAGAGGGAGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_58:84004-84186 - A---------------------AAG-------------------------------------------------------------------------------------------------------------------------------------------A---------------G-AAAGAGAGAGA------------------GAGAGAGAG--AGAGAGAGAGACGG-------------------------AG----------AGAG--------------AGAGAGAGAGAGAGGCTGAGAGA------GAGGCT--------------------GAGAGCAGCAGAG--------------------------------------------------------------------------------AGC---------------------------------------ATAGCGAGTCATATGCTATCTATATAAATTGGCTCCAGAGGCAGAC-----------------C------CAATCAGTCGCACAGCGAAC--------CAGAGCAGACC-CGGATCACAGATCC
droAna3 scaffold_13117:489696-489881 + C---------------------CAT--------------------CCGCACCATCCGCAGACGCTGCCAAGGAGCGCGGAACGGGA------GCGGGAGCGCGAGCGGG-------------------------------AACGCGAC----AGGG--------A-CAGAGAGCGG-----------G----A------------------GAGGGA--------AC-------------GAGAG----AGGG--------------------------------------AG----CGGGAGCGGGAAAGGGA------------------GACAGAGAGAGAGCTGGAGCGGCAGAGAGAAAGGGAG---------------------------C----------------------------------GGGTGAAGG---------------------------------------------------------------------TGGCCA-CCTTGGAGAG-------------------------------------------------------------------------------
droBip1 scf7180000396022:6740-6915 - T---------------------ATACCAAG------------------------------------GCAAGTAAGGAATCGCGGCG------TCAAAAACAGCGACAGGACACGACGATGCCGCGACTATGGCCACTGGG----AGA-------------------A-----------------TGAGAGAGA------------------GAGCGAGCG--CGAGAGAGAGAGGGAG-----AG--CG------------AAAGCACCAGAAAGAG--------------AGAGAGAGGGAAAGGAAGCGAGA------GAAGGT--------------------------------------------------------------------------------------------------------------GAGATGGCGAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302696:1912349-1912550 - A---------------------GAC--------------------AC-----------ACCAATATGAGGGCAAAGCTCGTGAGTCATTGAGTGTG--------------------------------------------------AG------A--------GCG-----A----A-------AGAG----A--GAAG------AA------------------GGACGCAAGAGAG-----AG--AG------------AGAGAGAGAGAGAGAG--------------AGAGAGAGAGAGAGAGAGAGAGA------GAGAGC--------------------GAGCGCAAAAGGA------------------------------AATTCAACGGGTG----------------------------------GAT--GGGG--CGTGCT-------------CCTTTTTTTTTGGG---AGGGGGCTCTACGGACTACGG--------------------------------------CCC------------------------------------------------------------
droFic1 scf7180000453858:1413360-1413520 + A---------------------AAA--------------------AA-----------------------------------------------A----TGG---------------------------------AT-----------------A--------GAG-----A----T-------AGAG----A--------------AACAGAGAAAGAGAGAG--A-------------------GGG------------AGAGAGGGA----GAGAGGGAGAGGGAGAGAGGGAGAGGGAGAGGGAGAGAGA------GTGTGG--------------------------------------------------------------------------------------------------------------GGCACAGTGAG------------------------------------------CTA-------------------------------------ATTTCGAATTCATTCAGCTGCCAAATC-GCCAGCTCATTAATCATGCT---------------------------T
droEle1 scf7180000490996:133262-133392 + TCGCCGAGCCTACAGCTGAGTAG---------------------------------------------------------------------------------------------------------------------ATAGAGA----TAGAG--------A-AAGAGAGAGAGAG---A----G----A--GAGA------GA------------------GAGAGAGAGAGAG-----AG--AG------------AGAGAGAGAGAGAGAG--------------AGAGAGAGAGAGAGAGAGAGAGA------GAGAGA--------------------------------------------------------------------------------------------------------------GAGAGAGAGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000776762:139188-139277 + G---------------------GGG--------------------G----------------------------------------------------------------------------------------------GAAGA------------------------------------------G----C----GA------GGGAGAGAGTGA------------------GAGAG---ACGGAG------------AGCAAAAGA----GCG--------------AGAGAGAGGGAAAAAGAGAGAGA------GAAAGA--------------------------------------------------------------------------------------------------------------GAGTGGGAGTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302470:135350-135469 + G---------------------AAC--------------------AAATACAAT------------------------------------------------------G-------------------------------TAAATCA----AGCAAGAAGAGAGA---------GAG-------A--G----A--GAGA------GA------------------GAGAGAGAGAGAG-----AG--AG------------AGAGAGAGAGAGAGAG--------------AGAGAGAGAGAGAGAGAGAGAGA------GAGAGA--------------------------------------------------------------------------------------------------------------GAGAGAGAGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415383:355745-355834 - G---------------------TGA--------------------G----------------------------------------------------------------------------------------------------------------------AG-----A----A-------AGAG----A--------------GAGAGAGAGAGAG--AGAGA-------------------GAG------------AGAGAGAGA----GAGAG------------AGAGAGAGAGAGAGAGAGACGAA------GCCGGC--------------------------------------------------------------------------------------------------------------GAGAGCGTAAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409509:714138-714247 - A---------------------CGA--------------------G----------------------------------------------------------------------------------------------AAAGAGAG------A--------GAG-----AGAGAG--AGAAGA--G----A--GAGA------GA------------------GAGAGAGAGAGAG-----AG--AG------------AGAGAGAGAGAGAGAG--------------AGAGAGAGAGAGAGAGAGAGAGA------GAGAGA--------------------------------------------------------------------------------------------------------------GAGAGGGGGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3RHet:2136620-2136743 - T---------------------GCG--------------------A----------------------------------------------GAA----AGGG-------------------------------------TACAAGAGAGAGAGAG--------A-----GAGA--G-------AGAGAGAGA--GAGA------GA------------------GA-------------GAGAG--AG--AGAGAGAGAGAGAGAGAGAGAGAGAG--------------AGAGAGAGAAAGAGAGAGAGAGA------GAGAGA--------------------------------------------------------------------------------------------------------------GCGAGCGAGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2r:19212577-19212759 - G---------------------CTGTCTGAG------TGAGTGAA----------------------------------------A------AAA----AGA---------------------------------ATAGA----AAA--AGGAGAG---------------CCAAAG--AG-ATAGAGAGAGAAG------GA------------G------------------AGC---GAGAG----------------AACGACCAAGAGAGAG--------------AGAGAGAGCGAGAGAGAAAGAGA------------------GTTGAAGAAAGGACGAAAGCAAAAGTGAAACTTGCAG---------------------------C----------------------------------AAAGAAAGG---------------------------------------------------------------------------------------TGAGTTAATGGTCAGC--AAGGCCCAA---------------------------------------------------
droSec2 scaffold_9:1985712-1985915 - G---------------------CTGTCTGAG------TGAGTGAA----------------------------------------A------AAA----AGA---------------------------------ATAGA----AAA--AGGAGAG---------------CCAAAG--AG-ATAGAGAGAGAAG------GA------------G------------------AGC---GAGAG----------------AACGACCAAGAGAG----------------AGAGAGAGCGAGAGAGAAAGAGA------------------GTTAAAGAAAGGACGAAAGCAAAAGTGAAACTTGCAG---------------------------C----------------------------------AAAGAAAGG---------------------------------------------------------------------------------------TGAGTTAATGGTCAGC--AAGGCCCAAAA-AGTATTCTACAAATTGCAAT---------------------------T
droYak3 X:11391145-11391317 + A---------------------GGT--------------------GG----------------------------------------------------------------------------------------------G--TCAA----ACA--------------------------------G------------------AGAGAGAGAGA------------------GAGAG---AAAGAG------------AGAGAGAGA----GAG--------------ATAGAGAGAGAGAGAGAGAGAGG------GAGAGAGAGTGAGTGGG------------CGGTGCAAAC-----------AGAGAATGCGGCGCCT--TAATTAAAT-------------------------------------------------------------------------------------------------------------GCACTCG-------------------CTGTGGTTGCT--GCGTACCTGTG-GCTGTGTTGCCGGCGG----------------------------TGGT
droEre2 scaffold_4929:13438967-13439157 + A---------------------CAG--------------------G----------------------------------------------------------------------------------------------TAAGAGAG----CGGG---------------CCGCAG--AG-AGAGAGAGAGAGA------GA------------G------------------AGA---GAGAG--AG------------AGAGAGAGAGAGCGAG----------------------AGAGAGAGGGAGGG----------------------------------AGAGCACGAGCGGGACGGC---TATAGCTCGC-GCACCTGGTAATTACACCTGTGCTAATACGGTTCGCTGCTTTGCCTGCGACAGAGCGAGACGGCCAG-----------------------------------------------------------------------------------------------C--TGTG-----------------------------------------------CGCAGTTTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
C---------------------GCT--------------------GC-----------GCACGCTGGCGAGCAGCGCATCGCCGCT------GCCGGAACTGACACAGG-------------------------------TAAGAGAA----ACAAACAGAGAGC---------G-------A----G----A--GCGA------AA------------------GC-------------GAGAG----AGAGAGAGACAGAGCACCAGAGTGAGAG--------------AGAGTGAGGGCGGGAGGAAGGGA------GGCAGC--------------------------------------------------------------------------------------------------------------GAGAGTGTGAG-------------------T-----------------------------------------CTTGGCT-CTGTGGTGAGTTGACTTTGTGGCCACC--ATGGCCCAATC-GCCGCTTTGCAAATGGTGGTTGCAAAATTAACCGCTATGCACAGTTGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................GAGGGCGGGAGGAAGGGA------.............................................................................................................................................................................................................................................................................................1813.003000000000000000000000000000000000200000000000000000000000000010
............................................................................CATCGCCGCT------GCCGGAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002011000000000000000000000000000000000000000000000000000000000000
........................................................................AGCGCATCGCCGCT------GCCGGAACTGACAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002002000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................GAGGAAGGGA------GGCAGC--------------------------------------------------------------------------------------------------------------GAGAG....................................................................................................................................................................2111.001000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................CAGAGTGAGAG--------------AGAGTGAGGGC...............................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GCACCAGAGTGAGAG--------------AGAG......................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000001000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................C--------------------------------------------------------------------------------------------------------------GAGAGTGTGAG-------------------T-----------------------------------------CTTGGCT-C........................................................................................2111.001000000000000000000000001000000000000000000000000000000000000000
..........................................................................CGCATCGCCGCT------GCCGGAACTGACAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAAAATTAACCGCTATGC........2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................................AGCGCATCGCCGCT------GCCGGAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000001
........................................................................................................................................................................................................................................................................................................GAGGGCGGGAGGAAGGGA------G............................................................................................................................................................................................................................................................................................1911.001000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAG-------------------T-----------------------------------------CTTGGCT-CTGTGGTGAGT..............................................................................2511.001000000000000000000000000010000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GCACCAGAGTGAGAG--------------AGAGTGA...................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................GAGGGCGGGAGGAAGGGA------GG...........................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTTTGTGGCCACC--ATGGC.......................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GAGGGCGGGAGGAAGGGA------GGCA.........................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................CGCT------GCCGGAACTGACACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
........................T--------------------GC-----------GCACGCTGGCGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..........................................................GCACGCTGGCGAGCAGCGCATCGCCGCT------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTAACCGCTATGCACAGT...2111.001000000000000000000000000000000001000000000000000000000000000000
.....................................................................AGCAGCGCATCGCCGCT------GCCGGAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................GCATCGCCGCT------GCCGGAACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................AG----AGAGAGAGACAGAGCACCA.................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCT-CTGTGGTGAGTTGAC..........................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................GA------AA------------------GC-------------GAGAG----AGAGAGAGA...........................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................GA------AA------------------GC-------------GAGAG----AGAGAGA.............................................................................................................................................................................................................................................................................................................................................................18200.051000000001000000000000000000000000000000000000000000000000000000
droMoj3
T---------------------GGT--------------------GC-----------GAACGTTGGCAAGCAGCGCATCGCCGCT------GCCGGAACTGACACAGG-------------------------------TAAGA------------------------------------------G----C--------------AACAAAGCAAGCTAGAG--C-------------------GAG------------GGAGTGGGA----GAGCGAGCAAGAGAGCAAG----CGG-------TACGAGCAGGGGTGAGAGG--------------------------------------------------------------------------------------------------------------GAGCAGGAG--TGTGTG-------------C-----------------------------------------ATTGGTT-GCGTGGTGGAT-----------------T------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
G---------------------CGGCT-GCTGGATTCTGGACATA----------------------------------------A------GAC----AGA-----------------------------------------ACGA----GAGAG--------A-TAGAGAGACAGGG---A----G----A--AAGA------GA------------------GAGAGAGAGAGAG-----AG--AA------------AGAAAAAGAGAAAGAG--------------AGAGAGAGAGAAAAAGAGAAAGA------GAGAGA--------------------------------------------------------------------------------------------------------------GAGAGAGAGAGAACATGTAATGGCCTTGGTCTTGTGGCTTTCA--------------------------------------------GCGTCAACTCTGT----------------------------TTCAGATAGTAAGTAGCAACCGCACTTCAATG------TATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
C---------------------CAA--------------------CA----------------------------------------------------AGAG-------------------------------------CAAAGGAGACAAACGC--------A-----CACA--A-------AGAG----A----GACAGCGAAC---------------------------------GAGAG----AGAGAG------AGAGAGAGC----AAGTG------------A----------------------------------------GTGGG------------GGAAAGAGAC------------------------------GAATGAAGGGAGG------------------------GAGG-GAGG-GAGGGGGGCCGA-------------------------CTTTGGGCATAGAGGGTAGCATTGCCTTTGT--------------------------------------TGC------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................G----AGAGAG------AGAGAGAGC----AAGTG------------..........................................................................................................................................................................................................................................................................................................................21100.10100100
dp5
T---------------------GAT--------------------AGAGATGAC-------------------------------A------GAG----A--------------------------------------------TGA----TAGAG--------A-GAGAGAGAGAGAG---A----G----A--GAGA------GA------------------GAGAGAGAGAGAT-----AG--GG------------AGAGGGATAGAGAGAG--------------AGAGAGAGGGAGAGAGAGAGAGA------GGGGGA--------------------------------------------------------------------------------------------------------------GAGAGGGAGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................GAGA------GA------------------GAGAGAGAGAGA................................................................................................................................................................................................................................................................................................................................................................................18200.1020000002000
.....................................................................................................................................................................................................................................................................AGAGGGATAGAGAGAG--------------AGA.......................................................................................................................................................................................................................................................................................................................19190.0510000000010
........................................................................................................................................................................................................................................................................................................................GA------GGGGGA--------------------------------------------------------------------------------------------------------------GAGAGGGAGA...............................................................................................................................................................18200.0510100000000
..................................................................................................................................................A----TAGAG--------A-GAGAGAGAGAGAG---A----..................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
.....................................................................................................................................................................................................................................................................................................AGAGAGGGAGAGAGAGAGAGA------.............................................................................................................................................................................................................................................................................................21200.0510100000000
..............................................................................................................................................................................................................................................................................GAGAGAG--------------AGAGAGAGGGA...............................................................................................................................................................................................................................................................................................................18200.0510000100000
...................................................................................................................................................................................................GAGA------GA------------------GAGAGAGAGAGAT-----A.........................................................................................................................................................................................................................................................................................................................................................................20200.0510000001000
droPer2
A---------------------AAG-------------------------------------------------------------------------------------------------------------------------------------------A---------------G-AAAGAGAGAGA------------------GAGAGAGAG--AGAGAGAGAGACGG-------------------------AG----------AGAG--------------AGAGAGAGAGAGAGGCTGAGAGA------GAGGCT--------------------GAGAGCAGCAGAG--------------------------------------------------------------------------------AGC---------------------------------------ATAGCGAGTCATATGCTATCTATATAAATTGGCTCCAGAGGCAGAC-----------------C------CAATCAGTCGCACAGCGAAC--------CAGAGCAGACC-CGGATCACAGATCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGCGAAC--------CAGAGCAGACC-CGGAT.........2711.001100000
droAna3
C---------------------CAT--------------------CCGCACCATCCGCAGACGCTGCCAAGGAGCGCGGAACGGGA------GCGGGAGCGCGAGCGGG-------------------------------AACGCGAC----AGGG--------A-CAGAGAGCGG-----------G----A------------------GAGGGA--------AC-------------GAGAG----AGGG--------------------------------------AG----CGGGAGCGGGAAAGGGA------------------GACAGAGAGAGAGCTGGAGCGGCAGAGAGAAAGGGAG---------------------------C----------------------------------GGGTGAAGG---------------------------------------------------------------------TGGCCA-CCTTGGAGAG-------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................GAAAGGGA------------------GACAGAGAGAGA.....................................................................................................................................................................................................................................................................2011.001100000
................................................................................................GAGCGCGAGCGGG-------------------------------AACGCGAC----AGGG--------A-.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
........................................................................................................................................................................GAGAGCGG-----------G----A------------------GAGGGA--------AC-------------GAGAG----....................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.......................................................................................................................................................................AGAGAGCGG-----------G----A------------------GAGGGA--------A...........................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
............................................................................................................................................................................GCGG-----------G----A------------------GAGGGA--------AC-------------GAGAG----AGGG--------------------------------------A.........................................................................................................................................................................................................................................................................................................................2411.001010000
...........................................................................................................................................................................................................................................................GG--------------------------------------AG----CGGGAGCGGGAAAGGGA------------------.................................................................................................................................................................................................................................................................................2120.501000001
..................................................................................................................................................................................................................................................GAG----AGGG--------------------------------------AG----CGGGAGCGGGAA........................................................................................................................................................................................................................................................................................................2130.331010000
droBip1
T---------------------ATACCAAG------------------------------------GCAAGTAAGGAATCGCGGCG------TCAAAAACAGCGACAGGACACGACGATGCCGCGACTATGGCCACTGGG----AGA-------------------A-----------------TGAGAGAGA------------------GAGCGAGCG--CGAGAGAGAGAGGGAG-----AG--CG------------AAAGCACCAGAAAGAG--------------AGAGAGAGGGAAAGGAAGCGAGA------GAAGGT--------------------------------------------------------------------------------------------------------------GAGATGGCGAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
A---------------------GAC--------------------AC-----------ACCAATATGAGGGCAAAGCTCGTGAGTCATTGAGTGTG--------------------------------------------------AG------A--------GCG-----A----A-------AGAG----A--GAAG------AA------------------GGACGCAAGAGAG-----AG--AG------------AGAGAGAGAGAGAGAG--------------AGAGAGAGAGAGAGAGAGAGAGA------GAGAGC--------------------GAGCGCAAAAGGA------------------------------AATTCAACGGGTG----------------------------------GAT--GGGG--CGTGCT-------------CCTTTTTTTTTGGG---AGGGGGCTCTACGGACTACGG--------------------------------------CCC------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
A---------------------AAA--------------------AA-----------------------------------------------A----TGG---------------------------------AT-----------------A--------GAG-----A----T-------AGAG----A--------------AACAGAGAAAGAGAGAG--A-------------------GGG------------AGAGAGGGA----GAGAGGGAGAGGGAGAGAGGGAGAGGGAGAGGGAGAGAGA------GTGTGG--------------------------------------------------------------------------------------------------------------GGCACAGTGAG------------------------------------------CTA-------------------------------------ATTTCGAATTCATTCAGCTGCCAAATC-GCCAGCTCATTAATCATGCT---------------------------TSizeHit CountTotal NormTotal
No Reads
droEle1
TCGCCGAGCCTACAGCTGAGTAG---------------------------------------------------------------------------------------------------------------------ATAGAGA----TAGAG--------A-AAGAGAGAGAGAG---A----G----A--GAGA------GA------------------GAGAGAGAGAGAG-----AG--AG------------AGAGAGAGAGAGAGAG--------------AGAGAGAGAGAGAGAGAGAGAGA------GAGAGA--------------------------------------------------------------------------------------------------------------GAGAGAGAGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
G---------------------GGG--------------------G----------------------------------------------------------------------------------------------GAAGA------------------------------------------G----C----GA------GGGAGAGAGTGA------------------GAGAG---ACGGAG------------AGCAAAAGA----GCG--------------AGAGAGAGGGAAAAAGAGAGAGA------GAAAGA--------------------------------------------------------------------------------------------------------------GAGTGGGAGTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
G---------------------AAC--------------------AAATACAAT------------------------------------------------------G-------------------------------TAAATCA----AGCAAGAAGAGAGA---------GAG-------A--G----A--GAGA------GA------------------GAGAGAGAGAGAG-----AG--AG------------AGAGAGAGAGAGAGAG--------------AGAGAGAGAGAGAGAGAGAGAGA------GAGAGA--------------------------------------------------------------------------------------------------------------GAGAGAGAGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
G---------------------TGA--------------------G----------------------------------------------------------------------------------------------------------------------AG-----A----A-------AGAG----A--------------GAGAGAGAGAGAG--AGAGA-------------------GAG------------AGAGAGAGA----GAGAG------------AGAGAGAGAGAGAGAGAGACGAA------GCCGGC--------------------------------------------------------------------------------------------------------------GAGAGCGTAAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
A---------------------CGA--------------------G----------------------------------------------------------------------------------------------AAAGAGAG------A--------GAG-----AGAGAG--AGAAGA--G----A--GAGA------GA------------------GAGAGAGAGAGAG-----AG--AG------------AGAGAGAGAGAGAGAG--------------AGAGAGAGAGAGAGAGAGAGAGA------GAGAGA--------------------------------------------------------------------------------------------------------------GAGAGGGGGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
T---------------------GCG--------------------A----------------------------------------------GAA----AGGG-------------------------------------TACAAGAGAGAGAGAG--------A-----GAGA--G-------AGAGAGAGA--GAGA------GA------------------GA-------------GAGAG--AG--AGAGAGAGAGAGAGAGAGAGAGAGAG--------------AGAGAGAGAAAGAGAGAGAGAGA------GAGAGA--------------------------------------------------------------------------------------------------------------GCGAGCGAGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................AGAGAGAGAGAG--------A-----GAGA--G-------AGA..................................................................................................................................................................................................................................................................................................................................................................................................................................21205.90118000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001180000000000000000000000000000
............................................................................................GAA----AGGG-------------------------------------TACAAGAGAGAGAGAG--------A-----GAG................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TACAAGAGAGAGAGAG--------A-----GAGA--.............................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................GA------------------GA-------------GAGAG--AG--AGAGAGA...........................................................................................................................................................................................................................................................................................................................................................18201.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000
....................................................................................................................................................................................................................................................G--AG--AGAGAGAGAGAGAGA...................................................................................................................................................................................................................................................................................................................................................18201.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000
..................................................................................................................................................................................................................................................GAG--AG--AGAGAGAGAGAGA.....................................................................................................................................................................................................................................................................................................................................................18201.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000
.....................................................................................................................................................................................................GA------GA------------------GA-------------GAGAG--AG--AGAGA.............................................................................................................................................................................................................................................................................................................................................................18201.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000
................................................................................................................................................................................................................................................GAGAG--AG--AGAGAGAGAGA.......................................................................................................................................................................................................................................................................................................................................................18201.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000
.................................................................................................................................................................................................................................GA-------------GAGAG--AG--AGAGAGAGA.........................................................................................................................................................................................................................................................................................................................................................18201.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000
......................................................................................................G-------------------------------------TACAAGAGAGAGAGAG--------A-----GAG................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................G-------------------------------------TACAAGAGAGAGAGAG--------A-----G..................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................AGAGAGAGAGAGA------GAGAGA--------------------------------------------------------------------------------------------------------------GC.......................................................................................................................................................................21200.90180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000000000001000000000080
...........................................................................................................................................................................................GAGAGA--GAGA------GA------------------GA-------------GAGAG--AG--A.................................................................................................................................................................................................................................................................................................................................................................22200.70140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000060000000000000000000000000
......................................................................................................................................................................................................A------GA------------------GA-------------GAGAG--AG--AGAGAGAG..........................................................................................................................................................................................................................................................................................................................................................20200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................A--GAGA------GA------------------GA-------------GAGAG--AG--AGAG..............................................................................................................................................................................................................................................................................................................................................................20200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................AGAGAG--------A-----GAGA--G-------AGAGAGAGA--GAGA------GA------------------............................................................................................................................................................................................................................................................................................................................................................................................27200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021100000000000
....................................................................................................................................................................................................AGA------GA------------------GA-------------GAGAG--AG--AGAGAG............................................................................................................................................................................................................................................................................................................................................................20200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................AGA--GAGA------GA------------------GA-------------GAGAG--AG--AG................................................................................................................................................................................................................................................................................................................................................................20200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................AGAGAGAGA--GAGA------GA------------------GA-------------GAGA.........................................................................................................................................................................................................................................................................................................................................................................21200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000800000000000000000
................................................................................................................................................................................G-------AGAGAGAGA--GAGA------GA------------------GA-------------GAGA.........................................................................................................................................................................................................................................................................................................................................................................22200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000
.............................................................................................................................................................................A--G-------AGAGAGAGA--GAGA------GA------------------GA-------------GA...........................................................................................................................................................................................................................................................................................................................................................................21200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000800000000000000000
.........................................................................................................................................................................................GAGAGAGA--GAGA------GA------------------GA-------------GAGAG--A.....................................................................................................................................................................................................................................................................................................................................................................22200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000
...................................................................................................................................................GAGAGAGAG--------A-----GAGA--G-------AGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................21200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000
...............................................................................................................................................................................................GA--GAGA------GA------------------GA-------------GAGAG--AG--AGAGA.............................................................................................................................................................................................................................................................................................................................................................22200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000
..........................................................................................................................................................................................................................................................................................................GAAAGAGAGAGAGAGA------GAGA.........................................................................................................................................................................................................................................................................................20200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000010000000
.............................................................................................................................................................................................GAGA--GAGA------GA------------------GA-------------GAGAG--AG--AGA...............................................................................................................................................................................................................................................................................................................................................................22200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000
............................................................................................................................................................................................................................................................................................................AAGAGAGAGAGAGA------GAGAGA--------------------------------------------------------------------------------------------------------------GC.......................................................................................................................................................................22200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000300000000000000000000000000000000000100
............................................................................................................................................................................................................................................................................................................AAGAGAGAGAGAGA------GAGA.........................................................................................................................................................................................................................................................................................18200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000
................................................................................................................................................................................................................................................................GAGAGAGAGAGAGAGAGAGAG--------------AG........................................................................................................................................................................................................................................................................................................................23200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000
................................................................................................................................................................................................................................................GAGAG--AG--AGAGAGAGAGAGAGAG..................................................................................................................................................................................................................................................................................................................................................23200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000
........................................................................................................................................................................................................................................................G--AGAGAGAGAGAGAGAGAGAGAG............................................................................................................................................................................................................................................................................................................................................23200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000
.............................................................................................................................................ACAAGAGAGAGAGAG--------A-----GAGA--G-------.....................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................AAGAGAGAGAGAGA------GAGAGA--------------------------------------------------------------------------------------------------------------G........................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................................................................AGAG--------------AGAGAGAGAAAGAGAGAGAGAG....................................................................................................................................................................................................................................................................................................2650.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..............................................................................................................................................................................................................................................................................................................GAGAGAGAGAGA------GAGAGA--------------------------------------------------------------------------------------------------------------GCGA.....................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
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................................................................................................................................................................................................................................................................................................................GAGAGAGAGA------GAGAGA--------------------------------------------------------------------------------------------------------------GC.......................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...........................................................................................................................................................G--------A-----GAGA--G-------AGAGAGAGA--GAGA------GA------------------G...........................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
G---------------------CTGTCTGAG------TGAGTGAA----------------------------------------A------AAA----AGA---------------------------------ATAGA----AAA--AGGAGAG---------------CCAAAG--AG-ATAGAGAGAGAAG------GA------------G------------------AGC---GAGAG----------------AACGACCAAGAGAGAG--------------AGAGAGAGCGAGAGAGAAAGAGA------------------GTTGAAGAAAGGACGAAAGCAAAAGTGAAACTTGCAG---------------------------C----------------------------------AAAGAAAGG---------------------------------------------------------------------------------------TGAGTTAATGGTCAGC--AAGGCCCAA---------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................AAGAGAGAG--------------AGAGAGAGCGAGA.............................................................................................................................................................................................................................................................................................................2281.7514000014000000000000
.........................................................................................................................................................................................GAGAGAGAAG------GA------------G------------------AGC---GC...........................................................................................................................................................................................................................................................................................................................................................................1890.11100000100000000000
.........................................................................................................................................................................................................................................................................................................AGCGAGAGAGAAAGA.....................................................................................................................................................................................................................................................................................................15120.08100000000001000000
droSec2
G---------------------CTGTCTGAG------TGAGTGAA----------------------------------------A------AAA----AGA---------------------------------ATAGA----AAA--AGGAGAG---------------CCAAAG--AG-ATAGAGAGAGAAG------GA------------G------------------AGC---GAGAG----------------AACGACCAAGAGAG----------------AGAGAGAGCGAGAGAGAAAGAGA------------------GTTAAAGAAAGGACGAAAGCAAAAGTGAAACTTGCAG---------------------------C----------------------------------AAAGAAAGG---------------------------------------------------------------------------------------TGAGTTAATGGTCAGC--AAGGCCCAAAA-AGTATTCTACAAATTGCAAT---------------------------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
A---------------------GGT--------------------GG----------------------------------------------------------------------------------------------G--TCAA----ACA--------------------------------G------------------AGAGAGAGAGA------------------GAGAG---AAAGAG------------AGAGAGAGA----GAG--------------ATAGAGAGAGAGAGAGAGAGAGG------GAGAGAGAGTGAGTGGG------------CGGTGCAAAC-----------AGAGAATGCGGCGCCT--TAATTAAAT-------------------------------------------------------------------------------------------------------------GCACTCG-------------------CTGTGGTTGCT--GCGTACCTGTG-GCTGTGTTGCCGGCGG----------------------------TGGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................GAG--------------ATAGAGAGAGAGAGA...........................................................................................................................................................................................................................................................................................................18200.10201000010000
....................................................................................................................................................................................................................................................................................................TAGAGAGAGAGAGAGAGA.......................................................................................................................................................................................................................................................................................................18200.05100100000000
.......................................................................................................................................................................................................................................................................................................AGAGAGAGAGAGAGAGAGG------GAGAG........................................................................................................................................................................................................................................................................................24200.05100010000000
...........................................................................................................................................................................................G------------------AGAGAGAGAGA------------------GAGAG---AAAGA.....................................................................................................................................................................................................................................................................................................................................................................22200.05100000010000
.................................................................................................................................................................................................................GAGAGAGA------------------GAGAG---AAAGAG------------........................................................................................................................................................................................................................................................................................................................................................19200.05100000010000
.............................................................................................................................................................................................................................................GAG---AAAGAG------------AGAGAGAGA----GAG--------------A.........................................................................................................................................................................................................................................................................................................................22200.05100000010000
droEre2
A---------------------CAG--------------------G----------------------------------------------------------------------------------------------TAAGAGAG----CGGG---------------CCGCAG--AG-AGAGAGAGAGAGA------GA------------G------------------AGA---GAGAG--AG------------AGAGAGAGAGAGCGAG----------------------AGAGAGAGGGAGGG----------------------------------AGAGCACGAGCGGGACGGC---TATAGCTCGC-GCACCTGGTAATTACACCTGTGCTAATACGGTTCGCTGCTTTGCCTGCGACAGAGCGAGACGGCCAG-----------------------------------------------------------------------------------------------C--TGTG-----------------------------------------------CGCAGTTTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................GAGAGCGAG----------------------AGAGAGAGGT........................................................................................................................................................................................................................................................................................................19200.0510000100
......................................................................................................................................................................................................................................................................GAGAGAGAGAGCGAG----------------------AGA...............................................................................................................................................................................................................................................................................................................18200.0510000010
..............................................................................................................................................................................CAG--AG-AGAGAGAGAGAGA------GA------------......................................................................................................................................................................................................................................................................................................................................................................................................20200.0510001000
................................................................................................................................................................................................................................................GAGAG--AG------------AGAGAGAGAGAGC...........................................................................................................................................................................................................................................................................................................................................20200.0510000010
...........................................................................................................................................................................................................................................................................AGAGAGCGAG----------------------AGAGAGAG..........................................................................................................................................................................................................................................................................................................18200.0510000010
........................................................................................................................................................................................................................................................................GAGAGAGAGCGAG----------------------AGAGA.............................................................................................................................................................................................................................................................................................................18200.0510000100
................................................................................................................................................................................G--AG-AGAGAGAGAGAGA------GA------------G------------------...................................................................................................................................................................................................................................................................................................................................................................................19200.0511000000

Generated: 05/17/2015 at 04:36 AM