ID:

dvi_8806

 Coordinate:

scaffold_12928:4095065-4095215 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.4 -21.9 -21.7 -21.7

Flybase annnotation

CDS [Dvir\GJ16891-cds]; exon [dvir_GLEANR_17394:1]; intron [Dvir\GJ16891-in]

No Repeatable elements found

Sense Strand Reads

-----------------------###########################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGCCAACTGAGAAATTGTGCAAAATGAGTGGGGATGTGGCTGCTGAAAATGTAAGTAATTTCGAGACGTATTTATTTTTATGTAATTTTCATCTGTTCAGTAAGTGCATTAACGAGCGGTGCGAATGTGTTGATAATTTTCACATGTAAAAAATGCATAAGTACTTGCAACCAATGCAAGTGTCGACCAACCTGCGCCTAAATCATGCGTAGTCGCATTGCAATAAAGAGTAAAAGGCCTTTTGGTAATTT
******************************************************************************************************............((..((((...((.(((((.......(((.((((.....((((........)))).....)))).))))))))))....))))))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M028
head
 SRR060658
140_ovaries_total
 M027
male body		 SRR060660
Argentina_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060676
9xArg_ovaries_total
 V116
male body		 SRR060677
Argx9_ovaries_total
 SRR060679
140x9_testes_total
 V047
embryo
 SRR060681
Argx9_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060673
9_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060678
9x140_testes_total
 V053
head
 M047
female body
 SRR060654
160x9_ovaries_total
 SRR060656
9x160_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060683
160_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR1106727
larvae
 SRR060680
 9xArg_testes_total
 M061
embryo
 GSM1528803
follicle cells		 SRR060659
Argentina_testes_total
..................................................................................................................................................................................AGTGTCGACCAACCTGCGCCT.................................................... 21 0 1 5.00 5 3 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................CAAGTGTCGACCAACCTGCGC...................................................... 21 0 1 4.00 4 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AAGTGTCGACCAGCCTGCGC...................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TGAGTGGGGATGTGGCTGCT............................................................................................................................................................................................................... 20 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................AGTGCATTAACGAGCGGTGCG................................................................................................................................ 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TGCAACCAATGCAAGTGTCGA................................................................. 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................ATGTAATTTTCATCTGTTCAG....................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTTATGTAATTTTCATCTGTTCAGT...................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................GGTGAGTGGGGATGTGGCTGCT............................................................................................................................................................................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GGCCTGCGCCTAAATCATGCG.......................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CAACCAATGCAAGTGTCGACC............................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TCATCTGTTCAGTAAGTGCAT.............................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............AATTGTGCAAAGTGAGTGGG........................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TTCGAGACGTATTTATTTTTA........................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................AACCTGCGCCTGGATCATGCG.......................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGCAATAAAGAGTAAAAGGC............. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................ATGAGTGGGGATGTGGCTGC................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GCAAAATGAGTGGGGATG....................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGCATTGACGAGCGGTGCGAAAA............................................................................................................................ 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................TTTCATCTGTTCAGTAAGTGC................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............ATTGTGCAAAATGAGTGGGGA......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................AAAATGAGTGGGGATGTGGCTT................................................................................................................................................................................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TAAGTGCATTAACGAGCGGTG.................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TAGGTGCATTAACGAGCGGTG.................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TCAGTAAGTGCATTAACGAGC...................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........AAATTGTGCAAAATGAGTGGG........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GAGAAATTGTGCAAAATGAGTGGGGA......................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CACATGTAAGAAATGCATAAG.......................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AAGTGCATTAACGAGCGGTGCC................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................AGTGTCGACCAACCTGCGCCC.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................CTGTTCAGTAAGTGCATTAAC.......................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ACCTGCGCCTAAATCATGCGTAGTCGCA.................................. 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TGCAGGATGAGTGGGGATGTG..................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................AATGAGTGGGGATGTGGCTGC................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GGGTGCATTAACGAGCGGTGC................................................................................................................................. 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGTGGCTGCTGAAAATGTA...................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TAGTCGCATTGCAATAAAGAG..................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................AAAATGAGTGGGGATGTG..................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................GCCTGAATCATGCGTAGTCGCA.................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................CCTAAATCATGCGTAGTCGCA.................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................GCAAAATGAGTGGGGATGTG..................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AAGTGCATTAACGAGCGGTG.................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AAAGAGTAAAAGGCCTTTTGG...... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AAGTGTCGACCAACCTGCGCCT.................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................AGTGTCGACCAACCTGCGCCTA................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AAGTGTCGACCAACCTGCGCC..................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................TGTAAGTAATTTCTAGACGTA..................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AATGCAAGTGTCGACCAACCT.......................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GTAATTTCGAGACGTATTTA................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TTGTGCAAAATGAGTGGGGAT........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................AAATGAGTGGGGATGTGGCTG................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................AAATGTGTGGGAATGTGGCTG................................................................................................................................................................................................................. 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........AGAAATTGTGCGGAGTGAGTG............................................................................................................................................................................................................................. 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................AAATGAGGGGGAATATGGCT.................................................................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GCAAACTGAGTGTGGATG....................................................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GTGAAGAAGGCCTTTTGGT..... 19 3 20 0.10 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................AGTGGGCATGTGGCTGGT............................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TAAGTCCCGTAACGAGCG..................................................................................................................................... 18 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................AGAAGGCCTTTTGGT..... 15 1 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................CTAAACCATTCGTAGACG.................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACGGTTGACTCTTTAACACGTTTTACTCACCCCTACACCGACGACTTTTACATTCATTAAAGCTCTGCATAAATAAAAATACATTAAAAGTAGACAAGTCATTCACGTAATTGCTCGCCACGCTTACACAACTATTAAAAGTGTACATTTTTTACGTATTCATGAACGTTGGTTACGTTCACAGCTGGTTGGACGCGGATTTAGTACGCATCAGCGTAACGTTATTTCTCATTTTCCGGAAAACCATTAAA
****************************************************............((..((((...((.(((((.......(((.((((.....((((........)))).....)))).))))))))))....))))))****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060656
9x160_ovaries_total
 M027
male body		 M028
head
 M061
embryo
 SRR060654
160x9_ovaries_total
 SRR060657
140_testes_total
 SRR060658
140_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060670
9_testes_total
 SRR060671
9x160_males_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060681
Argx9_testes_total
 V116
male body		 V053
head
 SRR060662
9x160_0-2h_embryos_total
 SRR1106729
mixed whole adult body
 V047
embryo
.....................................................................................................................................................................................CAGCTGGTTGGACGCGGATTT................................................. 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TGGTTGGACGCGGATTTAGT.............................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TGGACGCGGATTTAGTACGCA......................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTAACGTTATTTCTCATTTT................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................ACGTTTTGCTCACCCCTACAC..................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................ACCCCTACACCGACGACTTTT.......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................TCACCCCTACACCGACGACTT............................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................GTTGGACGCGGGTTTAGT.............................................. 18 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TGGTTGGACGCGGGTTTAG............................................... 19 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................CCTACACCGACGACTTTTAC........................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................AAAGCTCTGCATAAATAAAA............................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GGTTGACTCTTTAACACGTTT.................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.CGGTTGACTCTTTAACACGTT..................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AGCTGGTTGGACGCGGATTTAGTAC............................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................CCCTACACCGACGACTTTTAC........................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................GTTGGACGCGGATTTAGTACG........................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TCGCCACGCTTACACAACTAT.................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTGGGCGCGGGTTTAGTACG........................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GACAAGTCATTCACGTAATT........................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GGTTGACTCTTTAACACGTT..................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CACGTAATTGCTCGCCACGCT............................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.CGGTCGGCTCTTTAACACGTT..................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CATTCACGTAATTGCTCGCCA................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................AAGTAGACAAGTCGTTCACGTA.............................................................................................................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................AAAAGCTCTGCATAAATAAAAATA.......................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TCACAGCTGGTTGGACGCGGGT................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................AGCTGGTTGGGCGCGGGTTTA................................................ 21 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................GCCGACGGCTTTTACATTCA................................................................................................................................................................................................... 20 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TCATTTTCTGGAAAACCAA.... 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................CGTAATTGCTCGCGACGTTTC............................................................................................................................. 21 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTTAAAGTAGACCAGGCATT.................................................................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................TCCCAGCTGTTTGGATGC....................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................TCTGGTTGGACGCGGC.................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:4095015-4095265 + dvi_8806 TGCCAACT-GAGAAATTGTGCAAAATGAGTGGGGATGTGGCTGCTGAAAATGTAAGTAATTTCGA-----GACG---TA-T--------------------------------------------------TT-------A--TTTTTATGTAATTTTC-AT-------------------------------------------------------------------------CTGTTCAGTAA------------------------------------------------------------------------------------------------------------------GTGCATTAACGAG---CGGTGCGAATGTGTTGATAATTTTCACAT----------------------------------------------------GTAAAAA----------ATGCAT-------------------------------AAG-----------------------------------------------------------------------------------TACTTGCAACCAATGCAAGTGTCGACCAACCTGCGCCTAAATCATG----------------------CGTAGTCG-----------------------------------------------------------------CATTGC---------------------------------------AA---------------------TAAA------------GA---------GTAAAAGGCCTTTTGG------------TAATTT
droMoj3 scaffold_6359:688830-689080 + TGCCAGCT-GAGAAATTGTGCAAAATGAGTGGGGATGTGGCTGCTGAAAATGTAAGTAATTTTGA-----GACG---TA-T--------------------------------------------------TT-------A--TTTTTATGTAATTTTC-AT-C------------------------------------------------------------------------CGCTTAGCA----------------------------------------------------AA-------------------------------------------------------------GTGAAGTGACGAA---AGGGGCAAGTGTGCTGTTAATTTTCGCAT----------------------------------------------------GCAA-AA----------ATGCAT-------------------------------AAG-----------------------------------------------------------------------------------TACTTGCAACCAGTGCAAGTTTCGACCGACCTGCACCTAAATCATG----------------------CGTAGTCG-----------------------------------------------------------------CATTGC---------------------------------------AA---------------------TGAA------------GA---------GTAAAAGGCCTTTTGG------------TAATTT
droGri2 scaffold_14853:565988-566288 - TGCCTACT-GAGAAATTGTGCAAAATGAGTGGGGATGTGGCTACAGAAAATGTAAGTAATTTTGCGAC-ACAAA-T--------------------------------------------------------A-------T--ATTTTATGTAATTTTTCAT-CTC---------------------------------------------------------------TGTTGTGTGT-----------------------------------------------------------------------------------------------------------CCGTCTGTTTGCAAGTGCATTGACGAAACACGGTGCTAACATG---TTAATT-TGATAT----------------------------------------------------G----AA----------ATGCAT-------------------------------AAGTTCCGCTGG--------------------C--AAG------TAAA-A-GTA-GTA-GC--------AAAAGCAAAAGCAGTCG---------TCAGTGCAAGTGGTGATAGACCTGCGCCCAAATCATG-------------------CGTCGCAGTCT-----------------------------------------------------------------CATTGC---------------------------------------AA---------------------TAA-----------AAGA---------GTAAAAGG-CCTTTGG------------TAATTT
droWil2 scf2_1100000004909:8882998-8883392 + dwi_2828 ---------------------AAAATGAGTGGGGATGTGGCTGCTGAAAATGTAAGTATAAAAAA----------TAAA-T-TACAAGATCTACAGGCCAGAGAGGAAA-----------TGT--ACCAT-TT-------T--TTTTTATGTAATTTTG-TTATTGTTTTGCGGCCCAGAATGCGAGAACACACACTCACAAAAAAAAGAAAGAAAAAAA-AACGTCAA------------------------------------------------AAAAGA------------------GAAT--TGCAAACGTGTTGAGTT----------------------------------------------------------------------------------------CACACACAAAAAGAGAGCATGAGAAAAAGCTGTATATATAGATATATAT-ATTTATACACATATATATAATTTCAAATT--------------AAAGTCAAGTACCTCCA-AACTTAAGCCAGTCATAAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAGCGATCCCAAAAATCAAAATCCACAC--------------------CAAA------------------AAGCAA-----------AAAAAGA----A---A----------AAATGCA---AGTAAAAGGCATATTAG------------TAATTT
dp5 XL_group1e:12152278-12152616 + TGCCAACC--AGAAATTGTGCAAAATGAGTGGGGATGTGGCTGCCGAAAATGTAAGTAATT----------------T--TTTGTATGGT---------AGGGGGGAAGGTGGCAAATTTCGT--GGCATTGT-------A--TTTTTATATAATTTAC-TTGTT---------------------------------------------------------------------------------------------------------------------------AAATGGTGCATCAAGAG--TGCAAACGTGTTGAATA------------------------------------------------------------------------TTGCAAGAACTCGGGCCAGGCCCAAAAGCCGTGCCTGGGG--TCG----------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCATC--GGCAAGTGTC------T---------------CGG--GCCGTTC-------ATCCCACAGCTGA---GATAAA---A-ACCCGTGTGCGTACAACAC-------------------A-------------TTGCATTGAAATCGGGGCAAAC-------------GCAAACGCAAAAAG---------------------C-TAAAGCAAAGGC---------AT-AAAGGCCTTTTAG------------TAATTG
droPer2 scaffold_14:1456545-1456883 - TGCCAACC--AGAAATTGTGCAAAATGAGTGGGGATGTGGCTGCCGAAAATGTAAGTAATT----------------T--TTTGTATGGT---------AGGGGGGAAGGTGGCAGATTTTGA--GGCATTGT-------A--TTTTTATATAATTTAC-TTGTT---------------------------------------------------------------------------------------------------------------------------AAATGGTGCATCAAGAG--TGCAAACGTGTTGAATA------------------------------------------------------------------------TTGCAAGAACTCGGGCCAGGCCCAAAAGCCGTGCCTGGGG--TCG----------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCATC--GGCAAGTGTC------T---------------CGG--GCCGTTC-------ATCCCACAGCTGA---GATAAA---A-ACCCGTGTGCGTACAACAC-------------------A-------------TTGCATTGAAATCGGGGCAAAC-------------GCAAACGCAAAAAG---------------------C-TAAAGCAAAGGC---------AT-AAAGGCCTTTTAG------------TAATTG
droAna3 scaffold_13117:1427052-1427424 + dan_1302 TGCCGAGCAAAAGAATTGTGCAAAATGAGTGGGGATGTGGCTGCCGAGAATGTAAGTCCC--------GAATAA-TTTA-T-TTCACT----------------------------ATTTCGTCTCGCATTTTCGGTGGGC--ATTTTATGTAATTTTG-----------------------------------------------------------CG-GGGGC-AAAGGAGTGTGGCCAGGAAGTGAGATGGCGAGGAGGT------GGCGGCCAAGAAGCTGGCAACTGGCA-ATGAAAAG--TGCAAACGTGTTGAATA------------------------------------------------------------------------TTGTCGAAA-----------------------------------------------------------------------------------ATTGCC-----GCAAAAAGAGTCAAGTGC------------------------------------------------------------------------------------------CGCTGCCAACGTA------C---------------TCGTCGCAGTCG-------CTATCGGCGGCGG---TGTTGCTG---GGGAGAGTGCGTAAAACGT-------------------ACAATGGACACAGGTTGCATGG--------------------------------------------------GA------AGAA------------AA---------AT-AAAG--ATTTTAGCAAGCAGGCAAATAATTG
droBip1 scf7180000396425:686905-687283 - TGCCGAGCAAAAGAATTGTGCAAAATGAGTGGGGATGTGGCTGCCGAGAATGTAAGTCCC--------GAAAAA-TTTA-T-TTAACT----------------------------ATATCGTCTCGCATTTTCGGTGGGC--ATTTTATGTAATTTTC-----------------------------------------------------------CG-GGGGC-AAAGGAGTGTGGCCAGGAAGTGAGGTCGCGAGGAGGAGACGGCGGCGGCCAAGAAGCTGGCAACTGGCA-AAGAAAAG--TGCAAACGTGTTGAATA------------------------------------------------------------------------TTGTCGAAA-----------------------------------------------------------------------------------ATTGCC-----GCAAAAAGAGTCAAGTGC------------------------------------------------------------------------------------------CGCTGCCAGCGTA------C---------------TCGTCGCAGT-------------CGCACTCGACGGCGTTGTTGCTGGGCTGAGTGCGTAAAACGT-------------------AAAATGGACACAGGTTGAA-----------------------------------TGCGA---------------------AGAA------------AAA--TA-------CAA---ATTTTAGCAAGCAGGCAAATAATTG
droKik1 scf7180000302816:65386-65432 + AGC----------AATTGTGCAAAATGAGCGGAGATGTGGCTGCCGAAAATGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454038:448613-448898 + -------------------GCAAAATGAGTGGGGATGTGGCTGCCGAGAATGTAAGTGTCCGAAA--AAAAAAC-TCT--T--------------------------------------------------TC-------C--TTTTTATGTAATTTAA-----------------------------------------------------------CG-AAGGCCAA------------------------------------------------AGGAGG------------------AAAG--TGCAAACGTGTTGAATAGGGAG------C---------------------------------------------------------------------------------------------------------------------------------------------------------CTGCC-----GCAAACAGA--------------------------------------AGT------ATGG-AAAT-TGGGTGC--------GAAA-TG-----TGGGGTACATGAAATAGTTGAAAGTGTA------C----------------ACTCGCGGTCG-------GCGTCGCAGTCGA---CGTCGCTGCC-AGCAGTGTGCGTAAAATGC-------------------A----------------------------GGCAAAA------------------AGCAA---------------------CAAA------------AAA--TATAAAG-AACAGGCCTTTTGG------------TAATTG
droEle1 scf7180000491023:1386831-1387111 - --------------------CAAAATGAGTGGGGATGTGGCCGTCGAGAATGTAAGTGCAC-------GAAAAATTCT--G--------------------------------------------------TA-------C--TTTTTATGTAATTTAA-----------------------------------------------------------CG-AAGGCCAA------------------------------------------------AGGAGG------------------AAAG--TGCAAACGTGTTGAATCGTGAG------C---------------------------------------------------------------------------------------------------------------------------------------------------------CTGCC-----GCAAAA--------------------------------------CAAAAA-----------AAAA-TGGGTTC--------AAAATT--------GGGTACAACGAATAGTTGCAAGTGTA------C---------------GGC-TGCAGTCG-------GCGTCGCAGTCGA---CGTCGCTGCC-AGCAGAGTGCGTAAAATGC-------------------A----------------------------GGCAAAA-------------AAAACCCCAAAAA-----------A----------A----AAAAAAAGA---------GC-AAAAGACTTTTGG------------TAATTG
droRho1 scf7180000777097:282543-282816 - ----------------------AAATGAGTGGGGATGTGGCCGCTGAGAATGTAAGTGAACGAAA-----AAAA-TCT--C--------------------------------------------------TT-------C--TTTTTATGTAATTTAA-----------------------------------------------------------CG-AAGGCCAA------------------------------------------------AGGAGG------------------AAAG--TGCAAACGTGTTGAATAGCGAG-----------------CAGCGAGC---------------------------------------------------------------------------------------------------------------------------------------CTGCC-----GCAAA-------------------------------------------AT-------AA--AAGA-TGGGCTC--------GCAATT--------GGGTACACAGAATAGTTGCAAGTGTA------C---------------CGCCTGCAGTCG-------CCGTCGCAGTCGA---CGTCGCTGCC-AGCAGAGTGCGTAAAATGC-------------------A----------------------------GCGAAA------------------AAGCAA---------------------AAAAA-A--------------AA---AG-AAGAGG-CTTTTGG------------TAATTG
droBia1 scf7180000299226:180976-181275 - -------------------GCAAAATGAGTGGGGATGTGGCTGCCGAGAATGTAAGTGCCCCGAG--CGAAAAC-GCTC-T--------------------------------------------------TC-------C--TTTTTATGTAATTTAC-----------------------------------------------------------CG-AAGGCCG-----------------------------------------------CCAGGAGG------------------CTGGTGAGCGAACGTGTTGAATGGGGAG------C---------------------------------------------------------------------------------------------------------------------------------------------------------CTGCCCTGGCGCACGG--------------------------------------CGAGAAAAAAGACCACGAATG-TGGGTGC--------AACTCT-----CGGGGGTACAAGGAATTGTGGCAAGTGTA------C---------------C-----------------------GCGGTCGA---CGTCGCTGCC-GGCAGAGTGCGTAAAACGCTGCCGCGG-----------G-------------------------------------------------------------GCGGGCGGGGGAGGGGAAGC---AGG--------GC--GCA---GG-GAGAGGCGAGGGGG------------TAATTG
droTak1 scf7180000415381:821919-822202 + ----------------------AAATGAGTGGGGATGTGGCTGCCGAGAATGTAAGTGCCCAGAA----AAAAT-TCT--C--------------------------------------------------TC-------C--TTTTTATGTAATTTAA-----------------------------------------------------------CGCAAGGCCG-----------------------------------------------CCAGGAGG------------------AAAG--TGCAAACGTGTTGAATGGGGAG------C--------------CTGC---------------------------------------------------------------------------------------------------------------------------------------CTGCC-----GCAAAA-----------------------------------------AAA------TCAGAA-ATA-GAGTTC--------AAAATCGAAAACGGGGGTACAAAGAATAGTGGCAAGTGTA------CCGC------------CGCCTGACGTCG-------GCAGCGCAGTCGA---CGTCGCTGCC-AGCGGAGTGCGTAAAATGC-------------------A----------------------------GG----------------------------------GGCTGAGAAA-----AA---A---------------------A-AAGAGGCCTTTTGG------------TAATTG
droEug1 scf7180000409533:350757-351044 + ----------------------AAATGAGTGGGGATGTGGCTGCCGAGAATGTAAGTGCCCGAAA----AAAAA-TCT--T--------------------------------------------------TC-------C--TTTTTATGTAATTTAA-----------------------------------------------------------CG-AAGGCCAA----------------------------------------------ACAGGAGG------------------AAAG--TGCAAACGTGTTGAATAGGGAG------C---------------------------------------------------------------------------------------------------------------------------------------------------------CTGCC-----GCAAAGAAA--------------------------------------AAA------ACAG-AAAA-TGAGTAC--------AAAATT------CGGAGTACAACGAATAGTTGCAAGTGTA------C---------------CGCTTGCACTTG-------GCAGCGCAGTCGA---CGTCGCTGCC-AGCAGAGTGCGTAAAATGC-------------------A----------------------------AGCAAAA-------------AAA----------ACTAGCAGAGAGA-----AA---A---------AAA---------GT-AGAGGTCTTTTGG------------TAATTG
dm3 chrX:15213803-15214109 + -------------AGTTCCGCAAAATGAGTGGGGATGTGGCTGCCGAAAATGTAAGTGCCCTAAA--CGAAATA-TCCA-T-TC--------------------------------------------------------CT-TTTTTATGTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------G--TGCAAACGTGTTGAATGGGGGGACTTTGCCTGCCGCCTGCAGCCTGCCTG------------------------------------------------------TCAGTCCC----------------------------------------------------------------------------------AAA------------------------------------------AAA------TCA--A-GTT-AAATTCTGAACCGCATAATTG-----TAGGGTGCACAGGATAGTTGCAAGTGTA------C---------------CGCTCGCTGCTGGCAGCTGGCAGCGACGCCGA---CAGCGCTGCC-AGCAGAGTGCGTAAAATAC-------------------A-------------------------------------------------------------ACGAGCAGAGAAA-----AA---A----------AA--GTA---AG-AAGAGGTCTTTTGG------------TAATTG
droSim2 x:14377210-14377513 + dsi_8325 -------------AGTTCCGCAAAATGAGTGGGGATGTGGCTGCCGAAAATGTAAGTGCCCTAAA--CGAAAAA-TCCA-T-TC--------------------------------------------------------CTTTTTTTATGTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------G--TGCAAACGTGTTGAATGGGGGGACTTTGCCTGCCGCCTGCAGCCTGCTTG------------------------------------------------------TCAGTCCC----------------------------------------------------------------------------------AAA-------------------------------------------AA------TCA--A-GTT-AAATTCTGAACGGCATAATTG-----TAGGGTGCGCAGGATAGTTGCAAGTGTA------C---------------CGCTCGCTGCTG-------GCAGCGCTGTCGG---CGTCGCTGCC-AGCAGAGTGCGTAAAATGC-------------------A-------------------------------------------------------------ACGAGCAGAGAAAAA---AA---AAA--------AA--GTA---AG-AAGAGGTCTTTTGG------------TAATTG
droSec2 scaffold_56:101510-101820 + CGCTAAGC-G---AGTTCCGCAAAATGAGTGGGGATGTGGCTGCCGAAAATGTAAGTGCCCTAAA--CGAAAAA-TCCA-T-TC--------------------------------------------------------CTTTTTTTATGTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------G--TGCAAACGTGTTGAATGGGGGGACTTTGCCTGCCGCCTGCAGCCTGCTTG------------------------------------------------------TCAGTCCC----------------------------------------------------------------------------------AAA-------------------------------------------AA------TCA--A-GTT-AAGTTCTGAACGGCATAATTG-----TAGGGTGTGCAGGATAGTTGCAAGTGTA------C---------------CGCTCGCTGCTG-------GCACCGCTGTCGG---CGTCGCTGCC-AGCAGAGTGCGTAAAATGC-------------------A-------------------------------------------------------------ACGAGCAGAGAAA-----AA---AAA--------AA--GTA---AG-AAGAGGTCTTTTGG------------TAATTG
droYak3 X:9413991-9414308 + CGCTAGGC-G---AGCTCCGCAAAATGAGTGGGGATGTGGCTGCCGAAAATGTAAGTGCCCTTAA--CGAAAAT-TCTA-T-TC--------------------------------------------------------CGTTTTTTATGTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------G--TGCAAACGTGTTGAATGGGG-GACTTTGCCTGCCGC-------CTGC---------------------------------------------------------------------------------------------------------------------------------------CTGCC-----GCAAA-------------------------------------------AA------TCA--A-GTT-AAATTCTGCACCGAATAATTG-----TAGGGTGCATAGAATAGTTGCAAGTGTA------C---------------CGCTTGCTGTTG-------GCAGCGCAGTCGG---CGTCGCTGCT-AGCAGAGTGCGTAAAATGC-------------------A----------------------------GGCGAGAAGAAAAAGAGAGAAAA----------ACGAGCAGAGAAA-----AA---AA--------------TA---AG-AAGAGGCCTTTTGG------------TAATTG
droEre2 scaffold_4690:11807289-11807614 - CGCTAGGC-G---AGCTCCGCAAAATGAGTGAGGATGTGGCTGTCGAAAATGTAAGTGCCCTTAA--CGAAAAA-TCCAAT-TC--------------------------------------------------------CTTTTTTTATGTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------G--TGCAAACGTGTTGAATGGGGGGACTTTGCCTGCCGTCGGCAGCCTGC---------------------------------------------------------------------------------------------------------------------------------------CTGCC-----GCAAA-------------------------------------------AA------TCA--A-GTT-AAATTCTGCACCGAATAATTG-----TAGGGTGCACAGAATAGTTGCAAGTGTA------C---------------CGCTCGCTGTTT-------GCAGCGCAGTCGG---CGTCGCTGCC-AGCAGAGTGCGTAAAATGC-------------------A----------------------------GGCGAGCAGAAAAGGAGAGAAAA----------ACGAGCGGAGAAA-----AA---A---------------TA---AG-AAGAGGTCTTTTGG------------TAATTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGCCAACT-GAGAAATTGTGCAAAATGAGTGGGGATGTGGCTGCTGAAAATGTAAGTAATTTCGA-----GACG---TA-T--------------------------------------------------TT-------A--TTTTTATGTAATTTTC-AT-------------------------------------------------------------------------CTGTTCAGTAA------------------------------------------------------------------------------------------------------------------GTGCATTAACGAG---CGGTGCGAATGTGTTGATAATTTTCACAT----------------------------------------------------GTAAAAA----------ATGCAT-------------------------------AAG-----------------------------------------------------------------------------------TACTTGCAACCAATGCAAGTGTCGACCAACCTGCGCCTAAATCATG----------------------CGTAGTCG-----------------------------------------------------------------CATTGC---------------------------------------AA---------------------TAAA------------GA---------GTAAAAGGCCTTTTGG------------TAATTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTCGACCAACCTGCGCCT........................................................................................................................................................................................................................................2115.005230000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGTCGACCAACCTGCGC..........................................................................................................................................................................................................................................2114.004200000000000000000000000000010000000000000000000000000000000010
.........................TGAGTGGGGATGTGGCTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000020000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................A------------------------------------------------------------------------------------------------------------------GTGCATTAACGAG---CGGTGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000002000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACCAATGCAAGTGTCGA.....................................................................................................................................................................................................................................................2112.002000000000000000000000001000000001000000000000000000000000000000
....................................................................................................................................................ATGTAATTTTC-AT-------------------------------------------------------------------------CTGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000020000000000000000000000000000000000000
.................................................................................................................................................TTTATGTAATTTTC-AT-------------------------------------------------------------------------CTGTTCAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCAATGCAAGTGTCGACC...................................................................................................................................................................................................................................................2111.001000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TC-AT-------------------------------------------------------------------------CTGTTCAGTAA------------------------------------------------------------------------------------------------------------------GTGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
............................................................TTCGA-----GACG---TA-T--------------------------------------------------TT-------A--TTTTTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC---------------------------------------AA---------------------TAAA------------GA---------GTAAAAGGC.........................2011.001000000000000000000000000000000000000000000000000000000000000010
........................ATGAGTGGGGATGTGGCTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000001000000000000000000000000000000000000000000000000000000
...................GCAAAATGAGTGGGGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000100
...........................................................................................................................................................TTTC-AT-------------------------------------------------------------------------CTGTTCAGTAA------------------------------------------------------------------------------------------------------------------GTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
..............ATTGTGCAAAATGAGTGGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
.....................AAAATGAGTGGGGATGTGGCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................TAA------------------------------------------------------------------------------------------------------------------GTGCATTAACGAG---CGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TCAGTAA------------------------------------------------------------------------------------------------------------------GTGCATTAACGAG---C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
............AAATTGTGCAAAATGAGTGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.........GAGAAATTGTGCAAAATGAGTGGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................AA------------------------------------------------------------------------------------------------------------------GTGCATTAACGAG---CGGTGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTCGACCAACCTGCGCCC........................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................CTGTTCAGTAA------------------------------------------------------------------------------------------------------------------GTGCATTAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGCGCCTAAATCATG----------------------CGTAGTCG-----------------------------------------------------------------CA...............................................................................................................................2811.001000000000000000000000000001000000000000000000000000000000000000
.......................AATGAGTGGGGATGTGGCTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
...................................TGTGGCTGCTGAAAATGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTCG-----------------------------------------------------------------CATTGC---------------------------------------AA---------------------TAAA------------GA---------G.................................2111.001000000000000000000000000010000000000000000000000000000000000000
.....................AAAATGAGTGGGGATGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAAATCATG----------------------CGTAGTCG-----------------------------------------------------------------CA...............................................................................................................................2111.001000000000000000010000000000000000000000000000000000000000000000
...................GCAAAATGAGTGGGGATGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................AA------------------------------------------------------------------------------------------------------------------GTGCATTAACGAG---CGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA------------GA---------GTAAAAGGCCTTTTGG------------......2111.001000000001000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGTCGACCAACCTGCGCCT........................................................................................................................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTCGACCAACCTGCGCCTA.......................................................................................................................................................................................................................................2211.001000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGTCGACCAACCTGCGCC.........................................................................................................................................................................................................................................2111.001000000100000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCAAGTGTCGACCAACCT..............................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
.......................................................GTAATTTCGA-----GACG---TA-T--------------------------------------------------TT-------A--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000001000000000000000000000000000000000000000000000000000000
...............TTGTGCAAAATGAGTGGGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010000000000000000000000000000000000000000000000000000000000
......................AAATGAGTGGGGATGTGGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
droMoj3
TGCCAGCT-GAGAAATTGTGCAAAATGAGTGGGGATGTGGCTGCTGAAAATGTAAGTAATTTTGA-----GACG---TA-T--------------------------------------------------TT-------A--TTTTTATGTAATTTTC-AT-C------------------------------------------------------------------------CGCTTAGCA----------------------------------------------------AA-------------------------------------------------------------GTGAAGTGACGAA---AGGGGCAAGTGTGCTGTTAATTTTCGCAT----------------------------------------------------GCAA-AA----------ATGCAT-------------------------------AAG-----------------------------------------------------------------------------------TACTTGCAACCAGTGCAAGTTTCGACCGACCTGCACCTAAATCATG----------------------CGTAGTCG-----------------------------------------------------------------CATTGC---------------------------------------AA---------------------TGAA------------GA---------GTAAAAGGCCTTTTGG------------TAATTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................AATGAGTGGGGATGTGGCTGCTGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
droGri2
TGCCTACT-GAGAAATTGTGCAAAATGAGTGGGGATGTGGCTACAGAAAATGTAAGTAATTTTGCGAC-ACAAA-T--------------------------------------------------------A-------T--ATTTTATGTAATTTTTCAT-CTC---------------------------------------------------------------TGTTGTGTGT-----------------------------------------------------------------------------------------------------------CCGTCTGTTTGCAAGTGCATTGACGAAACACGGTGCTAACATG---TTAATT-TGATAT----------------------------------------------------G----AA----------ATGCAT-------------------------------AAGTTCCGCTGG--------------------C--AAG------TAAA-A-GTA-GTA-GC--------AAAAGCAAAAGCAGTCG---------TCAGTGCAAGTGGTGATAGACCTGCGCCCAAATCATG-------------------CGTCGCAGTCT-----------------------------------------------------------------CATTGC---------------------------------------AA---------------------TAA-----------AAGA---------GTAAAAGG-CCTTTGG------------TAATTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............AAATTGTGCAAAATGAGTGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101
.........................................................................................................................................................ATTTTTCAT-CTC---------------------------------------------------------------TGTTGTGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
..............................................................................................................................................................TCAT-CTC---------------------------------------------------------------TGTTGTGTGT-----------------------------------------------------------------------------------------------------------CC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAAAAGCAGTCG---------TCAGT................................................................................................................................................................................................................................................................2011.00110
droWil2
---------------------AAAATGAGTGGGGATGTGGCTGCTGAAAATGTAAGTATAAAAAA----------TAAA-T-TACAAGATCTACAGGCCAGAGAGGAAA-----------TGT--ACCAT-TT-------T--TTTTTATGTAATTTTG-TTATTGTTTTGCGGCCCAGAATGCGAGAACACACACTCACAAAAAAAAGAAAGAAAAAAA-AACGTCAA------------------------------------------------AAAAGA------------------GAAT--TGCAAACGTGTTGAGTT----------------------------------------------------------------------------------------CACACACAAAAAGAGAGCATGAGAAAAAGCTGTATATATAGATATATAT-ATTTATACACATATATATAATTTCAAATT--------------AAAGTCAAGTACCTCCA-AACTTAAGCCAGTCATAAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAGCGATCCCAAAAATCAAAATCCACAC--------------------CAAA------------------AAGCAA-----------AAAAAGA----A---A----------AAATGCA---AGTAAAAGGCATATTAG------------TAATTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................TTTTG-TTATTGTTTTGCGGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00220000
...................................................................................................................................................................................................................................................................................................................TGCAAACGTGTTGAGTT----------------------------------------------------------------------------------------CACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
.........................TGAGTGGGGATGTGGCTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.......................AATGAGTGGGGATGTGGCTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
...............................................................................................................................................................................................................................................................................................................AT--TGCAAACGTGTTGAGTT----------------------------------------------------------------------------------------CA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.....................AAAATGAGTGGGGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAGCGATCCCAAAAA...............................................................................................................................................2011.00101000
..........................GAGTGGGGATGTGGCTGCTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
............................................................................AAA-T-TACAAGATCTACAGGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
.......................AATGAGTGGGGATGTGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
.......................AATGAGTGGGGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100
...................................................................................................................................................................TTGTTTTGCGGCCCAGAATGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
dp5
TGCCAACC--AGAAATTGTGCAAAATGAGTGGGGATGTGGCTGCCGAAAATGTAAGTAATT----------------T--TTTGTATGGT---------AGGGGGGAAGGTGGCAAATTTCGT--GGCATTGT-------A--TTTTTATATAATTTAC-TTGTT---------------------------------------------------------------------------------------------------------------------------AAATGGTGCATCAAGAG--TGCAAACGTGTTGAATA------------------------------------------------------------------------TTGCAAGAACTCGGGCCAGGCCCAAAAGCCGTGCCTGGGG--TCG----------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCATC--GGCAAGTGTC------T---------------CGG--GCCGTTC-------ATCCCACAGCTGA---GATAAA---A-ACCCGTGTGCGTACAACAC-------------------A-------------TTGCATTGAAATCGGGGCAAAC-------------GCAAACGCAAAAAG---------------------C-TAAAGCAAAGGC---------AT-AAAGGCCTTTTAG------------TAATTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................GCAAAATGAGTGGGGATGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCATC--GGCAAGTGTC------T---------------CG...............................................................................................................................................................................................................................2011.0010100000000
.....................AAAATGAGTGGGGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........................GAGTGGGGATGTGGCTGCCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC--GGCAAGTGTC------T---------------CGG--GCC.........................................................................................................................................................................................................................2011.0011000000000
...........................AGTGGGGATGTGGCTGCCGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...................GCAAAATGAGTGGGGATGTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCAAAGGC---------AT-AAAGG..........................1911.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATC--GGCAAGTGTC------T---------------CGG--............................................................................................................................................................................................................................2011.0010100000000
.................................GATGTGGCTGCCGAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATC--GGCAAGTGTC------T---------------CGG--G...........................................................................................................................................................................................................................2011.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCGTGCCTGGGG--TCG----------------------------------------------------------------------------------------------------------------------------------------------------------------..........................................................................................................................................................................................................................................................................1911.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CG----------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCATC--GGCAAGTGTC------T---------------C................................................................................................................................................................................................................................2111.0010100000000
.......................AATGAGTGGGGATGTGGCTGCCGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGAACTCGGGCCAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGTGCCTGGGG--TCG----------------------------------------------------------------------------------------------------------------------------------------------------------------CC........................................................................................................................................................................................................................................................................1911.0010100000000
...................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------------TTGCAAGAACTCGGGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------A-------------TTGCATTGAAATCGGGGCA............................................................................................................2111.0010000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--GGCAAGTGTC------T---------------CGG--GCCGTT......................................................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCCTGGGG--TCG----------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCATC--.................................................................................................................................................................................................................................................................2111.0010100000000
..........................GAGTGGGGATGTGGCTGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010000
...........................AGTGGGGATGTGGCTGCCGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCCGTGCCTGGGG--TC...........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..............................................................................................................................................................................................................................................................................................................................TGAATA------------------------------------------------------------------------TTGCAAGAACTCGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................GCTGCCGAAAATGTAAGTAATT----------------T--TT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
................................................................................................................................................................................................................................................................................................................G--TGCAAACGTGTTGAATA------------------------------------------------------------------------TTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAAAAG---------------------C-TAAAGCAAAGG............................................2111.0010100000000
droPer2
TGCCAACC--AGAAATTGTGCAAAATGAGTGGGGATGTGGCTGCCGAAAATGTAAGTAATT----------------T--TTTGTATGGT---------AGGGGGGAAGGTGGCAGATTTTGA--GGCATTGT-------A--TTTTTATATAATTTAC-TTGTT---------------------------------------------------------------------------------------------------------------------------AAATGGTGCATCAAGAG--TGCAAACGTGTTGAATA------------------------------------------------------------------------TTGCAAGAACTCGGGCCAGGCCCAAAAGCCGTGCCTGGGG--TCG----------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCATC--GGCAAGTGTC------T---------------CGG--GCCGTTC-------ATCCCACAGCTGA---GATAAA---A-ACCCGTGTGCGTACAACAC-------------------A-------------TTGCATTGAAATCGGGGCAAAC-------------GCAAACGCAAAAAG---------------------C-TAAAGCAAAGGC---------AT-AAAGGCCTTTTAG------------TAATTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTC------T---------------CGG--GCCGTTC-------ATCCC.........................................................................................................................................................................................................2012.002200000
.......................AATGAGTGGGGATGTGGCTGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002010001
...............................................................................................................................................................................................................................................................................................................AG--TGCAAACGTGTTGAATA------------------------------------------------------------------------TT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.....................AAAATGAGTGGGGATGTGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
......................AAATGAGTGGGGATGTGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................CAAGAACTCGGGCCAGGCCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
....................................................................................................................................................................T---------------------------------------------------------------------------------------------------------------------------AAATGGTGCATCAAGAG--TGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.................................................................................................................................................................................................................................................................................................................................ATA------------------------------------------------------------------------TTGCAAGAACTCGGGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.............................TGGGGATGTGGCTGCCGAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.....................................................................................ATGGT---------AGGGGGGAAGGTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100
droAna3
TGCCGAGCAAAAGAATTGTGCAAAATGAGTGGGGATGTGGCTGCCGAGAATGTAAGTCCC--------GAATAA-TTTA-T-TTCACT----------------------------ATTTCGTCTCGCATTTTCGGTGGGC--ATTTTATGTAATTTTG-----------------------------------------------------------CG-GGGGC-AAAGGAGTGTGGCCAGGAAGTGAGATGGCGAGGAGGT------GGCGGCCAAGAAGCTGGCAACTGGCA-ATGAAAAG--TGCAAACGTGTTGAATA------------------------------------------------------------------------TTGTCGAAA-----------------------------------------------------------------------------------ATTGCC-----GCAAAAAGAGTCAAGTGC------------------------------------------------------------------------------------------CGCTGCCAACGTA------C---------------TCGTCGCAGTCG-------CTATCGGCGGCGG---TGTTGCTG---GGGAGAGTGCGTAAAACGT-------------------ACAATGGACACAGGTTGCATGG--------------------------------------------------GA------AGAA------------AA---------AT-AAAG--ATTTTAGCAAGCAGGCAAATAATTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGGTTGCATGG--------------------------------------------------GA------AGAA------------.............................................2011.001000010
.....................AAAATGAGTGGGGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.......................AATGAGTGGGGATGTGGCTGCCGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
................................................................................................................................................................................................................................................CAGGAAGTGAGATGGCGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGG---TGTTGCTG---GGGAGAGT...........................................................................................................................................................................1911.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC------------------------------------------------------------------------------------------CGCTGCCAACGTA------C---------------TC...............................................................................................................................................................................................................................1911.001100000
..........................GAGTGGGGATGTGGCTGCCGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG-------CTATCGGCGGCGG---TGTTGCT.......................................................................................................................................................................................2311.001100000
...................................................................................................................................................................................................................................................GAAGTGAGATGGCGAGGAGGT------G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.........................TGAGTGGGGATGTGGCTGCCGAGAATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
............GAATTGTGCAAAATGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACACAGGTTGCATGG--------------------------------------------------GA------.............................................................2011.001100000
.................GTGCAAAATGAGTGGGGATGTGGCTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
droBip1
TGCCGAGCAAAAGAATTGTGCAAAATGAGTGGGGATGTGGCTGCCGAGAATGTAAGTCCC--------GAAAAA-TTTA-T-TTAACT----------------------------ATATCGTCTCGCATTTTCGGTGGGC--ATTTTATGTAATTTTC-----------------------------------------------------------CG-GGGGC-AAAGGAGTGTGGCCAGGAAGTGAGGTCGCGAGGAGGAGACGGCGGCGGCCAAGAAGCTGGCAACTGGCA-AAGAAAAG--TGCAAACGTGTTGAATA------------------------------------------------------------------------TTGTCGAAA-----------------------------------------------------------------------------------ATTGCC-----GCAAAAAGAGTCAAGTGC------------------------------------------------------------------------------------------CGCTGCCAGCGTA------C---------------TCGTCGCAGT-------------CGCACTCGACGGCGTTGTTGCTGGGCTGAGTGCGTAAAACGT-------------------AAAATGGACACAGGTTGAA-----------------------------------TGCGA---------------------AGAA------------AAA--TA-------CAA---ATTTTAGCAAGCAGGCAAATAATTGSizeHit CountTotal NormTotal
No Reads
droKik1
AGC----------AATTGTGCAAAATGAGCGGAGATGTGGCTGCCGAAAATGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
-------------------GCAAAATGAGTGGGGATGTGGCTGCCGAGAATGTAAGTGTCCGAAA--AAAAAAC-TCT--T--------------------------------------------------TC-------C--TTTTTATGTAATTTAA-----------------------------------------------------------CG-AAGGCCAA------------------------------------------------AGGAGG------------------AAAG--TGCAAACGTGTTGAATAGGGAG------C---------------------------------------------------------------------------------------------------------------------------------------------------------CTGCC-----GCAAACAGA--------------------------------------AGT------ATGG-AAAT-TGGGTGC--------GAAA-TG-----TGGGGTACATGAAATAGTTGAAAGTGTA------C----------------ACTCGCGGTCG-------GCGTCGCAGTCGA---CGTCGCTGCC-AGCAGTGTGCGTAAAATGC-------------------A----------------------------GGCAAAA------------------AGCAA---------------------CAAA------------AAA--TATAAAG-AACAGGCCTTTTGG------------TAATTGSizeHit CountTotal NormTotal
No Reads
droEle1
--------------------CAAAATGAGTGGGGATGTGGCCGTCGAGAATGTAAGTGCAC-------GAAAAATTCT--G--------------------------------------------------TA-------C--TTTTTATGTAATTTAA-----------------------------------------------------------CG-AAGGCCAA------------------------------------------------AGGAGG------------------AAAG--TGCAAACGTGTTGAATCGTGAG------C---------------------------------------------------------------------------------------------------------------------------------------------------------CTGCC-----GCAAAA--------------------------------------CAAAAA-----------AAAA-TGGGTTC--------AAAATT--------GGGTACAACGAATAGTTGCAAGTGTA------C---------------GGC-TGCAGTCG-------GCGTCGCAGTCGA---CGTCGCTGCC-AGCAGAGTGCGTAAAATGC-------------------A----------------------------GGCAAAA-------------AAAACCCCAAAAA-----------A----------A----AAAAAAAGA---------GC-AAAAGACTTTTGG------------TAATTGSizeHit CountTotal NormTotal
No Reads
droRho1
----------------------AAATGAGTGGGGATGTGGCCGCTGAGAATGTAAGTGAACGAAA-----AAAA-TCT--C--------------------------------------------------TT-------C--TTTTTATGTAATTTAA-----------------------------------------------------------CG-AAGGCCAA------------------------------------------------AGGAGG------------------AAAG--TGCAAACGTGTTGAATAGCGAG-----------------CAGCGAGC---------------------------------------------------------------------------------------------------------------------------------------CTGCC-----GCAAA-------------------------------------------AT-------AA--AAGA-TGGGCTC--------GCAATT--------GGGTACACAGAATAGTTGCAAGTGTA------C---------------CGCCTGCAGTCG-------CCGTCGCAGTCGA---CGTCGCTGCC-AGCAGAGTGCGTAAAATGC-------------------A----------------------------GCGAAA------------------AAGCAA---------------------AAAAA-A--------------AA---AG-AAGAGG-CTTTTGG------------TAATTGSizeHit CountTotal NormTotal
No Reads
droBia1
-------------------GCAAAATGAGTGGGGATGTGGCTGCCGAGAATGTAAGTGCCCCGAG--CGAAAAC-GCTC-T--------------------------------------------------TC-------C--TTTTTATGTAATTTAC-----------------------------------------------------------CG-AAGGCCG-----------------------------------------------CCAGGAGG------------------CTGGTGAGCGAACGTGTTGAATGGGGAG------C---------------------------------------------------------------------------------------------------------------------------------------------------------CTGCCCTGGCGCACGG--------------------------------------CGAGAAAAAAGACCACGAATG-TGGGTGC--------AACTCT-----CGGGGGTACAAGGAATTGTGGCAAGTGTA------C---------------C-----------------------GCGGTCGA---CGTCGCTGCC-GGCAGAGTGCGTAAAACGCTGCCGCGG-----------G-------------------------------------------------------------GCGGGCGGGGGAGGGGAAGC---AGG--------GC--GCA---GG-GAGAGGCGAGGGGG------------TAATTGSizeHit CountTotal NormTotal
No Reads
droTak1
----------------------AAATGAGTGGGGATGTGGCTGCCGAGAATGTAAGTGCCCAGAA----AAAAT-TCT--C--------------------------------------------------TC-------C--TTTTTATGTAATTTAA-----------------------------------------------------------CGCAAGGCCG-----------------------------------------------CCAGGAGG------------------AAAG--TGCAAACGTGTTGAATGGGGAG------C--------------CTGC---------------------------------------------------------------------------------------------------------------------------------------CTGCC-----GCAAAA-----------------------------------------AAA------TCAGAA-ATA-GAGTTC--------AAAATCGAAAACGGGGGTACAAAGAATAGTGGCAAGTGTA------CCGC------------CGCCTGACGTCG-------GCAGCGCAGTCGA---CGTCGCTGCC-AGCGGAGTGCGTAAAATGC-------------------A----------------------------GG----------------------------------GGCTGAGAAA-----AA---A---------------------A-AAGAGGCCTTTTGG------------TAATTGSizeHit CountTotal NormTotal
No Reads
droEug1
----------------------AAATGAGTGGGGATGTGGCTGCCGAGAATGTAAGTGCCCGAAA----AAAAA-TCT--T--------------------------------------------------TC-------C--TTTTTATGTAATTTAA-----------------------------------------------------------CG-AAGGCCAA----------------------------------------------ACAGGAGG------------------AAAG--TGCAAACGTGTTGAATAGGGAG------C---------------------------------------------------------------------------------------------------------------------------------------------------------CTGCC-----GCAAAGAAA--------------------------------------AAA------ACAG-AAAA-TGAGTAC--------AAAATT------CGGAGTACAACGAATAGTTGCAAGTGTA------C---------------CGCTTGCACTTG-------GCAGCGCAGTCGA---CGTCGCTGCC-AGCAGAGTGCGTAAAATGC-------------------A----------------------------AGCAAAA-------------AAA----------ACTAGCAGAGAGA-----AA---A---------AAA---------GT-AGAGGTCTTTTGG------------TAATTGSizeHit CountTotal NormTotal
No Reads
dm3
-------------AGTTCCGCAAAATGAGTGGGGATGTGGCTGCCGAAAATGTAAGTGCCCTAAA--CGAAATA-TCCA-T-TC--------------------------------------------------------CT-TTTTTATGTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------G--TGCAAACGTGTTGAATGGGGGGACTTTGCCTGCCGCCTGCAGCCTGCCTG------------------------------------------------------TCAGTCCC----------------------------------------------------------------------------------AAA------------------------------------------AAA------TCA--A-GTT-AAATTCTGAACCGCATAATTG-----TAGGGTGCACAGGATAGTTGCAAGTGTA------C---------------CGCTCGCTGCTGGCAGCTGGCAGCGACGCCGA---CAGCGCTGCC-AGCAGAGTGCGTAAAATAC-------------------A-------------------------------------------------------------ACGAGCAGAGAAA-----AA---A----------AA--GTA---AG-AAGAGGTCTTTTGG------------TAATTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............TTCCGCAAAATGAGTGGGGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2617.0070000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000200100
...................GCAAAATGAGTGGGGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000100000000000000101100000000000000000
................TCCGCAAAATGAGTGGGGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................TGCAAACGTGTTGAATGGGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGCATAATTG-----TAGGGTGC...........................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTG-----TAGGGTGCACAGGATAG..................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000000000000000000000000000000000000010000000000000000200000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA---CAGCGCTGCC-AGCAGAGT...........................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100001000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000
...............TTCCGCAAAATGAGTGGGGATGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010000000000000000000000000
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droSim2
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Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
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.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAAAATGC-------------------A-------------------------------------------------------------ACGAGCAGAG.....................................................................2111.00100010000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-AAATTCTGAACGGCATAATT.........................................................................................................................................................................................................................................................................................2211.00110000000000000000
................................................................................................................................................................................................................................................................................................................G--TGCAAACGTGTTGAATGGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.........................................................................................................................................................AT-----------------------------------------------------------------------------------------------------------------------------------------------------G--TGCAAACGTGTTGAATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGGCATAATTG-----TAGGG..............................................................................................................................................................................................................................................................................2011.00100000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAAGTGTA------C---------------CGCTCGCT.........................................................................................................................................................................................................................2111.00100000000001000000
...........................................CCGAAAATGTAAGTGCCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000010000000
................................................................................................................................................................................................................................................................................................................................AATGGGGGGACTTTGCCTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTGTCGG---CGTCGC........................................................................................................................................................................................1611.00100000000001000000
.................................GATGTGGCTGCCGAAAATGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................TTGAATGGGGGGACTTTGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................TGAATGGGGGGACTTTGCCTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-AAGAGGTCTTTTGG------------TAA...1911.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGG---CGTCGCTGCC-AGCAG..............................................................................................................................................................................2111.00101000000000000000
............................GTGGGGATGTGGCTGCCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GTT-AAATTCTGAACGGCATA............................................................................................................................................................................................................................................................................................2111.00110000000000000000
...............................................................AA--CGAAAAA-TCCA-T-TC--------------------------------------------------------CTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---AA---AAA--------AA--GTA---AG-AAGAGGTC........................2111.00100000000001000000
.............................TGGGGATGTGGCTGCCGAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAAAA---AA---AAA--------A............................................15200.05100000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAA---AA---AAA--------AA--GTA---A..................................16200.05100000000000001000
droSec2
CGCTAAGC-G---AGTTCCGCAAAATGAGTGGGGATGTGGCTGCCGAAAATGTAAGTGCCCTAAA--CGAAAAA-TCCA-T-TC--------------------------------------------------------CTTTTTTTATGTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------G--TGCAAACGTGTTGAATGGGGGGACTTTGCCTGCCGCCTGCAGCCTGCTTG------------------------------------------------------TCAGTCCC----------------------------------------------------------------------------------AAA-------------------------------------------AA------TCA--A-GTT-AAGTTCTGAACGGCATAATTG-----TAGGGTGTGCAGGATAGTTGCAAGTGTA------C---------------CGCTCGCTGCTG-------GCACCGCTGTCGG---CGTCGCTGCC-AGCAGAGTGCGTAAAATGC-------------------A-------------------------------------------------------------ACGAGCAGAGAAA-----AA---AAA--------AA--GTA---AG-AAGAGGTCTTTTGG------------TAATTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---AG-AAGAGGTCTTTTGG------------TAATT.2212.0020002
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGTA------C---------------CGCTCGCTGCTG-------G.............................................................................................................................................................................................................2112.0020101
..........................................................................................................................................................T-----------------------------------------------------------------------------------------------------------------------------------------------------G--TGCAAACGTGTTGAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020101
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGGTGTGCAGGATAGTTGC..............................................................................................................................................................................................................................................................2111.0010001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTA------C---------------CGCTCGCTGCTG-------G.............................................................................................................................................................................................................1911.0011000
.................................GATGTGGCTGCCGAAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCTGCC-AGCAGAGTGCGT.......................................................................................................................................................................2111.0011000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------------------------------AA------TCA--A-GTT-AAGTTCTGAACGGCA..............................................................................................................................................................................................................................................................................................2511.0011000
...................GCAAAATGAGTGGGGATGTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGAACGGCATAATTG-----TG.................................................................................................................................................................................................................................................................................2111.0011000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGTGTA------C---------------CGCTCGCTG........................................................................................................................................................................................................................2011.0011000
.....................AAAATGAGTGGGGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCAGGATAGTTGCAAGT..........................................................................................................................................................................................................................................................2111.0011000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCATAATTG-----TAGGGTGTG..........................................................................................................................................................................................................................................................................2111.0010100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG-------GCACCGCTGTCGG---CGTCG.........................................................................................................................................................................................2111.0011000
.........................TGAGTGGGGATGTGGCTGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCATAATTG-----TAGGGTGT...........................................................................................................................................................................................................................................................................2111.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGCTGCC-AGCAGAGTGCGA.......................................................................................................................................................................2211.0010001
....................CAAAATGAGTGGGGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
..................CGCAAAATGAGTGGGGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
...........................................................................................................................................................................................................................................................................................................................TGTTGAATGGGGGGACTTTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
......................................................................................................................................................................................................................................................................................................................................GGGACTTTGCCTGCCGCCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCATAATTG-----TAGGG..............................................................................................................................................................................................................................................................................1811.0011000
.....................................................................................................................................................................................................................................................................................................................CAAACGTGTTGAATGGGGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
........................................................................................................................................................................................................................................................................................................................ACGTGTTGAATGGGGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTA------C---------------CGCTCGCTGCTG-------GCA...........................................................................................................................................................................................................2011.0010001
droYak3
CGCTAGGC-G---AGCTCCGCAAAATGAGTGGGGATGTGGCTGCCGAAAATGTAAGTGCCCTTAA--CGAAAAT-TCTA-T-TC--------------------------------------------------------CGTTTTTTATGTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------G--TGCAAACGTGTTGAATGGGG-GACTTTGCCTGCCGC-------CTGC---------------------------------------------------------------------------------------------------------------------------------------CTGCC-----GCAAA-------------------------------------------AA------TCA--A-GTT-AAATTCTGCACCGAATAATTG-----TAGGGTGCATAGAATAGTTGCAAGTGTA------C---------------CGCTTGCTGTTG-------GCAGCGCAGTCGG---CGTCGCTGCT-AGCAGAGTGCGTAAAATGC-------------------A----------------------------GGCGAGAAGAAAAAGAGAGAAAA----------ACGAGCAGAGAAA-----AA---AA--------------TA---AG-AAGAGGCCTTTTGG------------TAATTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................AAAATGAGTGGGGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.00400100030000
.................CCGCAAAATGAGTGGGGATGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
....................CAAAATGAGTGGGGATGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.......................AATGAGTGGGGATGTGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
........................ATGAGTGGGGATGTGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50100010000000
droEre2
CGCTAGGC-G---AGCTCCGCAAAATGAGTGAGGATGTGGCTGTCGAAAATGTAAGTGCCCTTAA--CGAAAAA-TCCAAT-TC--------------------------------------------------------CTTTTTTTATGTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------G--TGCAAACGTGTTGAATGGGGGGACTTTGCCTGCCGTCGGCAGCCTGC---------------------------------------------------------------------------------------------------------------------------------------CTGCC-----GCAAA-------------------------------------------AA------TCA--A-GTT-AAATTCTGCACCGAATAATTG-----TAGGGTGCACAGAATAGTTGCAAGTGTA------C---------------CGCTCGCTGTTT-------GCAGCGCAGTCGG---CGTCGCTGCC-AGCAGAGTGCGTAAAATGC-------------------A----------------------------GGCGAGCAGAAAAGGAGAGAAAA----------ACGAGCGGAGAAA-----AA---A---------------TA---AG-AAGAGGTCTTTTGG------------TAATTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------GCAGCGCAGTCGG---CGTCG.........................................................................................................................................................................................2011.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----TAGGGTGCACAGAATAGTTG...............................................................................................................................................................................................................................................................2111.0011000000
.........................................................................................................................................................AT-----------------------------------------------------------------------------------------------------------------------------------------------------G--TGCAAACGTGTTGAATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000
.......................................................................................................................................................................................................................................................................................................................................GGACTTTGCCTGCCGTCGGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
............................................................................................................................................................................................................................................................................................................................................TTGCCTGCCGTCGGCAGCCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATAATTG-----TAGGGTGCACA........................................................................................................................................................................................................................................................................2111.0010010000
..........................................................................................................................................................T-----------------------------------------------------------------------------------------------------------------------------------------------------G--TGCAAACGTGTTGAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...............................................................................................................................................................................................................................................................................................................................GAATGGGGGGACTTTGCCTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGG---CGTCGCTGCC-AGCAGAGT...........................................................................................................................................................................2211.0011000000
.................CCGCAAAATGAGTGAGGATGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...........................................................................................................................................................................................................................................................................................................................................TTTGCCTGCCGTCGGCAGCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
...........................AGTGAGGATGTGGCTGTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000

Generated: 05/16/2015 at 11:54 PM