dvi_875

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GGCATATATTATTATATTAAATGTTTTAGGATAAGCAGAAATAAAGTTTCTTAGATGGCAAATTACGCAATTTGAAGGCAAATATGAAAGCTTCTGACGCTTAGTAGCATTCATGAGTTTAATATTTAAATAAACAACTGCAAGCATCTAAGATATTGTCTATAAATCATATTATATTAAATTTAAAATATATTTTAATAGGTGGTTGGCATATTGCTGATTGTGTTGGGCTCCATAATGCTATCCAACTT ************************************************((((((.((.......)).)))))).......((((((.(((.((((...)))).))).))))))((((((((((..............((((..(((...))).))))..............))))))))))..................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	V047 embryo	M061 embryo	SRR060679 140x9_testes_total	SRR060665 9_females_carcasses_total	M027 male body	SRR060664 9_males_carcasses_total	V116 male body
..................................................................................................................................................................................................................ATATTGCTGATTGTGTTGGG.....................	20	0	1	4.00	4	0	2	2	0	0	0	0	0
..................................................................................................................................................................................................................ATATTGCTGATTGTGTTGGGCTC..................	23	0	1	3.00	3	1	2	0	0	0	0	0	0
....................................................................................................................................................................................................................ATTGCTGATTGTGTTGGG.....................	18	0	1	2.00	2	0	0	1	1	0	0	0	0
..........................................................................................................................................................................................................................GATTGTGTTGGGCTCCATAATGCTATCC.....	28	0	1	2.00	2	2	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATATTGCTGATTGTGTTGGGC....................	21	0	1	2.00	2	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................ATATTGCTGATTGTGTTGGGCT...................	22	0	1	1.00	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GATTGTGTTGGGCTCCATA..............	19	0	1	1.00	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TGATTGTGTTGGGCTCCATAAT............	22	0	1	1.00	1	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................GGTGGCATATTGCTGTTTGTGTTGGGCT...................	28	2	1	1.00	1	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................GATTGTGTTGGGCTCCATAATG...........	22	0	1	1.00	1	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................GATTGTGTTGGGCTCCATAATGCT.........	24	0	1	1.00	1	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................ATGTGGTTGGCGTGTTGCTGATT.............................	23	3	1	1.00	1	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................................ATATTGCTGATTGTGTTGGGCTCC.................	24	0	1	1.00	1	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................GTGGTTGGCATATTGCTG................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................CTCCATAATGCTATCCAACT.	20	0	1	1.00	1	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................GATTGTGTTGGGCTCCAT...............	18	0	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................GCTGATTGTGCTGGGCGCCATA..............	22	2	1	1.00	1	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................ATATTGCTGATTGTGTTGG......................	19	0	1	1.00	1	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATATTGCTGATTGTGTTGGGCTCCATA..............	27	0	1	1.00	1	1	0	0	0	0	0	0	0
...............................................................................................GACGCTTAGTAGCATTCATGAGTTTAAT................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................AGATTGCTGATTGTGTTGGGCTC..................	23	1	1	1.00	1	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................GGCATATTGCTGATTGTGTTGG......................	22	0	1	1.00	1	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................TATTGCTGATTGTGTTGG......................	18	0	1	1.00	1	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................GATTGTGTTGGGCTCCATAATGCTATC......	27	0	1	1.00	1	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................ATATTGCTGATTGTGTTTGG.....................	20	1	1	1.00	1	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................TATTGCTGATTGTGTTGGG.....................	19	0	1	1.00	1	0	0	0	0	0	0	0	1
............................................................................................................................................................................................................GTTGGCATATTGCTGATTGTGTTGGGC....................	27	0	1	1.00	1	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................GCTGATTGTGTTGGGCTTCAGA..............	22	2	1	1.00	1	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................GTTGGTTGGCATATTGCTGTTT.............................	22	2	2	0.50	1	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................TCTGGTGGTTGGCATATTGCT.................................	21	3	7	0.14	1	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GCTGAATGTGTCTGGCTCCA................	20	3	9	0.11	1	1	0	0	0	0	0	0	0
................................ATGCGGAAATAAAGTTTCT........................................................................................................................................................................................................	19	2	10	0.10	1	0	1	0	0	0	0	0	0
................................ATGGAGAAATAAAGTTTCT........................................................................................................................................................................................................	19	2	11	0.09	1	0	1	0	0	0	0	0	0

CCGTATATAATAATATAATTTACAAAATCCTATTCGTCTTTATTTCAAAGAATCTACCGTTTAATGCGTTAAACTTCCGTTTATACTTTCGAAGACTGCGAATCATCGTAAGTACTCAAATTATAAATTTATTTGTTGACGTTCGTAGATTCTATAACAGATATTTAGTATAATATAATTTAAATTTTATATAAAATTATCCACCAACCGTATAACGACTAACACAACCCGAGGTATTACGATAGGTTGAA ************************************************((((((.((.......)).)))))).......((((((.(((.((((...)))).))).))))))((((((((((..............((((..(((...))).))))..............))))))))))..................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	SRR060679 140x9_testes_total	V053 head	SRR1106729 mixed whole adult body	V047 embryo	SRR060686 Argx9_0-2h_embryos_total	SRR060668 160x9_males_carcasses_total
.....................................................................................................................................................................................................................ACGAACTAACACAACCCGAGGTA...............	23	3	1	1.00	1	0	1	0	0	0	0	0
...............................ATTCGTCTTTATTTCAAAGAATCTACCGT...............................................................................................................................................................................................	29	0	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................CAGATATGAAGTATCATATAAT........................................................................	22	3	5	0.20	1	0	0	1	0	0	0	0
.........................................................................................................CCGTAAGTCCGCAAATTATAA.............................................................................................................................	21	3	7	0.14	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................ACCATATCACGACTGACACA.........................	20	3	8	0.13	1	0	0	1	0	0	0	0
....................................TCTTTCTTTCAAGGAATC.....................................................................................................................................................................................................	18	2	16	0.06	1	0	0	0	0	1	0	0
.............................................................................................................................................TTCGCAGATTCTGAAACAG...........................................................................................	19	3	18	0.06	1	0	0	0	0	0	1	0
.............................................................................CGTTGAGACTTTCGAAGCC...........................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1
............................CTTATTCGTCCTTATTTC.............................................................................................................................................................................................................	18	2	20	0.05	1	1	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_10324:1034793-1035043 +	dvi_875	GGCATAT----ATTATTATATTAAATGTTTTAGGATAAGCAGAAATAAAGTTTCTTAGATGGCAAATTACGCAATTTGAAGGCAAATATGAAAGCTTCTGACGCTTAGTAGCATTCATGAGTTTAATATTTAAATAAACAACTGCAAGCATCTA---------------------AGATATTGTCTATA--------------AATCATATT----ATATTA-AATTTAAAA--------------------------------------TAT-ATTTTAATAGGTGGTTGGCATATTGCTGATTGTGTTGGGCTCCATAATGCTATCCAACTT--------
droMoj3	scaffold_6496:5003942-5004051 -		TTT-AAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTGATATA--------------CAATGAATT----ATAAAT-AATTCCTAATATAT---------------------------------TAT-AAATTTCTAGGCTGCAGGTATTTTGCTCATCGTAGTTGGCTCGATCATGCTGGATGGCAT--------
droGri2	scaffold_15245:9124813-9124943 +		AAT-ATT----------A---------------------------------------------------------------------------------------------------------------------------------------AGTTCCAAGACTGATTTG----AGATAGTC--AGTACATGATACTAAAAT---------A---------AAATTTTGAT--------------------------------CATATGTAT-TTCTTAACAGATCGTTGGCATCTTGCTCATTGTGTTGGGCTCCATAATGCTATCGAACTT--------
droWil2	scf2_1100000004513:2417444-2417582 +		AAA-AAA----AAAACCGAA----------------------------------------------------------------------------------------------------------------------------------------------ATCAATATG----A-ATTGCC--TATCCGCCATGTTCAAGT---------ACTTATTGTA-C--ATTTTA--------------------------------AA----TTT-GGTCTTTGTGGCCGGAGGAATTTTGTGCATTGTTGTGGGTTCGATTATGCTCTCCAATATGGGAGATT
dp5	3:1171092-1171143 +		A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCGTTGGCATCCTTCTGATCGTCCTGGGATCGATCATGTTGGCCGACAT--------
droPer2	scaffold_2:1339052-1339103 +		A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCGTTGGCATCCTTCTGATCGTCCTGGGATCGATCATGTTGGCCGACAT--------
droAna3	scaffold_13266:3138766-3138817 +		A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCGTTGGTATCCTCCTGATCGTTTTGGGATCGATTATGTTATCCGATCT--------
droBip1	scf7180000396427:1602846-1602937 +		GTC-GAT----ATAATCAAA-----------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------C---------AAACATTTCA--------------------------------TA----CTT-GTATTTCCAGATCGTCGGCATCCTTCTGATCGTTTTGGGATCGATTATGTTATCCGATCT--------
droKik1	scf7180000302630:209930-209987 +		A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCGTTGGCATCCTCCTGATCGTGCTGGGCTCGATCATGTTGTCCGATTG-TCCGAT-
droFic1	scf7180000453955:378692-378764 -		AAA-T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTAC--------------------------------------TAT-CTTTATCCAGATCGTTGGCATCCTTCTGATCGTGCTGGGCTCGATCATGTTGTCCGATCT--------
droEle1	scf7180000491217:62746-62901 -		TCA-TAA----ATCTCTTTTTTAAATA-------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTAATAAA--------------TAATCATAG----TTGAAA-ATATTCTGAAATAATAAACATTTTTTCATTTTAATCTTGAACTTTTTGA---TTCGTTTAGATCGTTGGCATCCTTCTGATCGTGCTGGGCTCGATTATGTTGTCCGATCT--------
droRho1	scf7180000779196:311090-311195 -		CAG-TCATC--------G---------------------------------------------------------------------------------------------------------------------------------------AAGCCTTTGACTAACATATGT-------------------------AGCT---------A----------ATTTTCGTA--------------------------------------TAT-TCCATTGCAGATATGCGGCATTTTGCTTATCACGTTCGGCTCCATTATGGTGTC-GACCA--------
droBia1	scf7180000302292:3249005-3249090 -		ATT-ATA-----TAATC--------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------C---------AAAAATCGTA--------------------------------------TAT-TTGTTTCCAGATCGTTGGCATCCTTCTGATCGTGCTGGGCTCGATCATGTTGTCCGACCT--------
droTak1	scf7180000415382:120006-120116 +		AAA-TGT----ACAACTAAA----------------------------------------------------------------------------------------------------------------------------------------TTCCAAAATAAAAGTTATAAGTT---------------------------------ATTT----------ATTGTA--------------------------------------CAC-TTTTTTACAGATCGTGGGAATCCTTTTGATCGTGCTGGGCTCGATCATGTTGTCGGATCT--------
droEug1	scf7180000409672:4910625-4910719 +		TAT-TATTTGTATTATTATT-----------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------A---------ATAAATTTTA--------------------------------------TCTTTTTTCCACAGATCGTTGGCATCCTTCTGATCGTGCTGGGCTCGATTATGTTATCCGATCT--------
dm3	chr2R:2895229-2895280 +		A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCGTTGGCATCCTACTGATCGTGTTGGGCTCGATCATGCTGTCCGATCT--------
droSim2	2r:3745881-3745932 +		A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCGTCGGCATCCTCCTGATCGTGCTGGGATCCATCATGCTGTCCGATCT--------
droSec2	scaffold_1:560952-561003 +		A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCGTCGGCATCCTCCTGATCGTGCTGGGATCGATCATGCTGTCCGATCT--------
droYak3	2L:15610092-15610199 +		AAG-TATCT------------------------------------------------------------------------------------------------------------------------------------------------A---------------------AATTATGGCTGGTA--------------AACTTACTT----ACTTAT-AATCCG--C--------------------------------------CGA-CTAATTCCAGATTGTTGGCATCCTCCTTATCGTGCTGGGCTCGATCATGTTATCCGATCT--------
droEre2	scaffold_4929:19671684-19671735 -		A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCGTTGGCGTCCTCCTGATCGTGCTGGGTTCGATCATGTTGTCCGATCT--------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

GGCATAT----ATTATTATATTAAATGTTTTAGGATAAGCAGAAATAAAGTTTCTTAGATGGCAAATTACGCAATTTGAAGGCAAATATGAAAGCTTCTGACGCTTAGTAGCATTCATGAGTTTAATATTTAAATAAACAACTGCAAGCATCTA---------------------AGATATTGTCTATA--------------AATCATATT----ATATTA-AATTTAAAA--------------------------------------TAT-ATTTTAATAGGTGGTTGGCATATTGCTGATTGTGTTGGGCTCCATAATGCTATCCAACTT--------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................................................................................................................................................................................................ATATTGCTGATTGTGTTGGG.............................	20	1	4.00	4	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.....................................................................................................................................................................................................................................................................................................ATATTGCTGATTGTGTTGGGCTC..........................	23	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.......................................................................................................................................................................................................................................................................................................ATTGCTGATTGTGTTGGG.............................	18	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GATTGTGTTGGGCTCCATAATGCTATCC.............	28	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATATTGCTGATTGTGTTGGGC............................	21	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATATTGCTGATTGTGTTGGGCT...........................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GATTGTGTTGGGCTCCATA......................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TGATTGTGTTGGGCTCCATAAT....................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GATTGTGTTGGGCTCCATAATG...................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GATTGTGTTGGGCTCCATAATGCT.................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATATTGCTGATTGTGTTGGGCTCC.........................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................GTGGTTGGCATATTGCTG........................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................CTCCATAATGCTATCCAACT.........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GATTGTGTTGGGCTCCAT.......................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATATTGCTGATTGTGTTGG..............................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATATTGCTGATTGTGTTGGGCTCCATA......................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................GACGCTTAGTAGCATTCATGAGTTTAAT.......................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GGCATATTGCTGATTGTGTTGG..............................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................TATTGCTGATTGTGTTGG..............................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................GATTGTGTTGGGCTCCATAATGCTATC..............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................TATTGCTGATTGTGTTGGG.............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................GTTGGCATATTGCTGATTGTGTTGGGC............................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTT-AAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTGATATA--------------CAATGAATT----ATAAAT-AATTCCTAATATAT---------------------------------TAT-AAATTTCTAGGCTGCAGGTATTTTGCTCATCGTAGTTGGCTCGATCATGCTGGATGGCAT--------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................................................................................................................................................................................................................GTTGGCTCGATCATGCTGGATGGC..........	24	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................AGTTGGCTCGATCATGCTGGATGGC..........	25	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CGTAGTTGGCTCGATCATGC..................	20	1	1.00	1	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................ATTTTGCTCATCGTAGTTG..............................	19	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................GGCTCGATCATGCTGGATGGC..........	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GTTGGCTCGATCATGCTGGATGGCA.........	25	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................GCTCATCGTAGTTGGCTCGAT.......................	21	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................TTTTGCTCATCGTAGTTGGCTC..........................	22	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................GGCTCGATCATGCTGGATG............	19	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TTTGCTCATCGTAGTTGGCTCGATC......................	25	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................GTATTTTGCTCATCGTAGTTGGCT...........................	24	1	1.00	1	1	0	0	0	0	0

droGri2

AAT-ATT----------A---------------------------------------------------------------------------------------------------------------------------------------AGTTCCAAGACTGATTTG----AGATAGTC--AGTACATGATACTAAAAT---------A---------AAATTTTGAT--------------------------------CATATGTAT-TTCTTAACAGATCGTTGGCATCTTGCTCATTGTGTTGGGCTCCATAATGCTATCGAACTT--------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

AAA-AAA----AAAACCGAA----------------------------------------------------------------------------------------------------------------------------------------------ATCAATATG----A-ATTGCC--TATCCGCCATGTTCAAGT---------ACTTATTGTA-C--ATTTTA--------------------------------AA----TTT-GGTCTTTGTGGCCGGAGGAATTTTGTGCATTGTTGTGGGTTCGATTATGCTCTCCAATATGGGAGATT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................................................................................................................................................................................................................................................................CGATTATGCTCTCCAATATGGGA....	23	1	32.00	32	0	6	26	0	0
...................................................................................................................................................................................................................................................................................GTCTTTGTGGCCGGAGGAATTTTGTGC........................................	27	1	9.00	9	0	1	8	0	0
.............................................................................................................................................................................................................................................................................................................................ATTATGCTCTCCAATATGGGA....	21	1	8.00	8	0	1	7	0	0
.................................................................................................................................................................................................................................................................................................................GTTGTGGGTTCGATTATGCT.................	20	1	7.00	7	0	0	6	1	0
..............................................................................................................................................................................................................................................................................................................ATTGTTGTGGGTTCGATTATGCT.................	23	1	6.00	6	0	3	3	0	0
.....................................................................................................................................................................................................................................................................................CTTTGTGGCCGGAGGAATTTTGTGC........................................	25	1	5.00	5	0	0	5	0	0
.....................................................................................................................................................................................................................................................................................CTTTGTGGCCGGAGGAATTTTGTGCATT.....................................	28	1	5.00	5	0	1	4	0	0
..............................................................................................................................................................................................................................................................................................................................TTATGCTCTCCAATATGGGA....	20	1	4.00	4	0	0	4	0	0
...............................................................................................................................................................................................................................................................................TT-GGTCTTTGTGGCCGGAGGA.................................................	21	1	4.00	4	0	0	4	0	0
.....................................................................................................................................................................................................................................................................................................ATTTTGTGCATTGTTGTGGGTTC..........................	23	1	4.00	4	0	2	2	0	0
.....................................................................................................................................................................................................................................................................................CTTTGTGGCCGGAGGAATTTTGT..........................................	23	1	3.00	3	0	0	3	0	0
............................................................................................................................................................................................................................................................................................................................GATTATGCTCTCCAATATGGGA....	22	1	3.00	3	0	1	2	0	0
......................................................................................................................................................................................................................................................................................TTTGTGGCCGGAGGAATTTTGT..........................................	22	1	3.00	3	0	0	3	0	0
.......................................................................................................................................................................................................................................................................................TTGTGGCCGGAGGAATTTTGTGC........................................	23	1	3.00	3	0	0	3	0	0
..............................................................................................................................................................................................................................................................................................................ATTGTTGTGGGTTCGATTATGCTCT...............	25	1	3.00	3	0	1	1	1	0
................................................................................................................................................................................................................................................................................................GAGGAATTTTGTGCATTGTTGTGGGTT...........................	27	1	3.00	3	0	2	1	0	0
.........................................................................................................................................................................................................................................................................................GTGGCCGGAGGAATTTTGT..........................................	19	1	3.00	3	0	0	3	0	0
..............................................................................................................................................................................................................................................................................................................ATTGTTGTGGGTTCGATTATGCTCTC..............	26	1	2.00	2	0	0	2	0	0
.................................................................................................................................................................................................................................................................................................................GTTGTGGGTTCGATTATGC..................	19	1	2.00	2	0	0	2	0	0
..............................................................................................................................................................................................................................................................................................................ATTGTTGTGGGTTCGATTAT....................	20	1	2.00	2	0	0	2	0	0
............................................................................................................................................................................................................................................................................................................GCATTGTTGTGGGTTCGATTATGC..................	24	1	2.00	2	0	0	2	0	0
....................................................................................................................................................................................................................................................................................................AATTTTGTGCATTGTTGTGGGTT...........................	23	1	2.00	2	0	1	1	0	0
...................................................................................................................................................................................................................................................................................................GAATTTTGTGCATTGTTGTGGGTTC..........................	25	1	2.00	2	0	0	2	0	0
................................................................................................................................................................................................................................................................................................................TGTTGTGGGTTCGATTATGCT.................	21	1	2.00	2	0	0	2	0	0
..............................................................................................................................................................................................................................................................................................................ATTGTTGTGGGTTCGATTATGCTCTCC.............	27	1	2.00	2	1	1	0	0	0
.....................................................................................................................................................................................................................................................................................................ATTTTGTGCATTGTTGTGGGTT...........................	22	1	2.00	2	0	1	1	0	0
............AAACCGAA----------------------------------------------------------------------------------------------------------------------------------------------ATCAATATG----A-ATTGCC--T............................................................................................................................................................	25	1	2.00	2	0	0	1	1	0
..................................................................................................................................................................................................................................................................................GGTCTTTGTGGCCGGAGGAATTTTGTGC........................................	28	1	2.00	2	0	1	0	1	0
.................................................................................................................................................................................................................................................................................................................GTTGTGGGTTCGATTATGCTCT...............	22	1	2.00	2	0	0	2	0	0
......................................................................................................................................................................................................................................................................................TTTGTGGCCGGAGGAATTTTGTGCATT.....................................	27	1	2.00	2	0	0	2	0	0
......................................................................................................................................................................................................................................................................................TTTGTGGCCGGAGGAATTTTGTGC........................................	24	1	2.00	2	0	0	2	0	0
.....................................................................................................................................................................................................................................................................................CTTTGTGGCCGGAGGAATTTTGTG.........................................	24	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................GTTGTGGGTTCGATTATGCTCTCC.............	24	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................GTCTTTGTGGCCGGAGGA.................................................	18	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................TTGTGCATTGTTGTGGGTTCGA........................	22	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................TTTTGTGCATTGTTGTGGGT............................	20	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................TCTTTGTGGCCGGAGGAATTTTGTGC........................................	26	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................ATTGTTGTGGGTTCGATTA.....................	19	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................GTCTTTGTGGCCGGAGGAATTTTGTG.........................................	26	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................GTTGTGGGTTCGATTATG...................	18	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................TTGTTGTGGGTTCGATTATGCT.................	22	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................GTGCATTGTTGTGGGTTCGATTATGCT.................	27	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................TTCGATTATGCTCTCCAATATGGGA....	25	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................CTTTGTGGCCGGAGGAAT...............................................	18	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................C--ATTTTA--------------------------------AA----TTT-GGTCTTTGTGGCCGG.....................................................	27	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................C--ATTTTA--------------------------------AA----TTT-GGTCTTTGT...........................................................	21	1	1.00	1	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................AATTTTGTGCATTGTTGTGGGTTC..........................	24	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................GTCTTTGTGGCCGGAGGAA................................................	19	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................GAATTTTGTGCATTGTTGTGGGTTCG.........................	26	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................CTTTGTGGCCGGAGGAATTTTG...........................................	22	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................TGGCCGGAGGAATTTTGTGCATT.....................................	23	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................GAATTTTGTGCATTGTTGTGGGTT...........................	24	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................TCTTTGTGGCCGGAGGAAT...............................................	19	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................ATG----A-ATTGCC--TATCCGCCATGTT................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................TATG----A-ATTGCC--TATCCGCCAT...................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................TTA--------------------------------AA----TTT-GGTCTTTGTGGCC.......................................................	21	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................C--TATCCGCCATGTTCAAGT---------ACTTATTG..........................................................................................................................	27	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................TGTTGTGGGTTCGATTATG...................	19	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................G----A-ATTGCC--TATCCGCCATGTTCAAGT---------A.................................................................................................................................	27	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................ATTGTTGTGGGTTCGATTATGCTC................	24	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................TT-GGTCTTTGTGGCCGGAGGAATTTTGTGC........................................	30	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................GTGGCCGGAGGAATTTTGTGC........................................	21	1	1.00	1	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................GATTATGCTCTCCAATATGGGAG...	23	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................C--TATCCGCCATGTTCAAGT---------A.................................................................................................................................	20	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................CGGAGGAATTTTGTGCAT......................................	18	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................CTTTGTGGCCGGAGGAATTTTGTGCAT......................................	27	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................CTTTGTGGCCGGAGGAATT..............................................	19	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................CGATTATGCTCTCCAATATGGGAGA..	25	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................CTTATTGTA-C--ATTTTA--------------------------------AA----TTT-G...................................................................	22	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................GGCCGGAGGAATTTTGTGC........................................	19	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................GGAATTTTGTGCATTGTTGTGGGTT...........................	25	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................CTTTGTGGCCGGAGGAATTT.............................................	20	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................CCGCCATGTTCAAGT---------ACTTATTGTA-.......................................................................................................................	25	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................TCGATTATGCTCTCCAATATGGGA....	24	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................GCATTGTTGTGGGTTCGATTA.....................	21	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................CGATTATGCTCTCCAATATGGG.....	22	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................TT-GGTCTTTGTGGCCGGAGGAATT..............................................	24	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................TT-GGTCTTTGTGGCCGGAGG..................................................	20	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................AATATG----A-ATTGCC--TATCCGCCAT...................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................GTGGGTTCGATTATGCTCTC..............	20	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................AATATG----A-ATTGCC--TATCCGCCATGT.................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................GTCTTTGTGGCCGGAGGAATTTTGT..........................................	25	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................CC--TATCCGCCATGTTCAAGT---------..................................................................................................................................	20	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................CATGTTCAAGT---------ACTTATTGTA-C--....................................................................................................................	22	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................TTGTGCATTGTTGTGGGTTCGAT.......................	23	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................AATTTTGTGCATTGTTGTGGGTTCGATTA.....................	29	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................GTTGTGGGTTCGATTATGCTCTCCA............	25	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................TT-GGTCTTTGTGGCCGGAGGAATTTTGT..........................................	28	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................CAATATG----A-ATTGCC--TATCCGCC.....................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................CTTTGTGGCCGGAGGAATTTTGTGCA.......................................	26	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................ATTGTTGTGGGTTCGATTATGC..................	22	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................GCATTGTTGTGGGTTCGATT......................	20	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................GGCCGGAGGAATTTTGTGCATT.....................................	22	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................TTTGTGCATTGTTGTGGGTT...........................	20	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................ATG----A-ATTGCC--TATCCGCCAT...................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................ATG----A-ATTGCC--TATCCGCCATGTTCAAGT---------A.................................................................................................................................	29	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................GGTCTTTGTGGCCGGAGGAATTTTGTG.........................................	27	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................ATG----A-ATTGCC--TATCCGCCA....................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................GTTGTGGGTTCGATTATGCTCTC..............	23	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................TT-GGTCTTTGTGGCCGGAGGAAT...............................................	23	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................GGTCTTTGTGGCCGGAGGA.................................................	19	1	1.00	1	0	1	0	0	0

dp5

A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCGTTGGCATCCTTCTGATCGTCCTGGGATCGATCATGTTGGCCGACAT--------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................................................................................................CGTCCTGGGATCGATCATGTTGGCC.............	25	1	3.00	3	0	2	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................ATCGTCCTGGGATCGATCATGTTGGC..............	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................ATCGTCCTGGGATCGATCATGTTGGCC.............	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CGTCCTGGGATCGATCATGTTGGC..............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GCATCCTTCTGATCGTCCTGGG.............................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATCCTTCTGATCGTCCTGGGATCGAT.......................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CCTGGGATCGATCATGTTGGCCGA...........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CGTCCTGGGATCGATCATG...................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CGTCCTGGGATCGATCATGTT.................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................CGTTGGCATCCTTCTGATCGTCCTGG..............................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................ATCGATCATGTTGGCCGAC..........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TCTGATCGTCCTGGGATC..........................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCGTTGGCATCCTTCTGATCGTCCTGGGATCGATCATGTTGGCCGACAT--------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................................................................................................ATCCTTCTGATCGTCCTGGGATCGAT.......................	26	1	6.00	6	4	0	2	0	0	0
.................................................................................................................................................................................................................................................................................................TGGCATCCTTCTGATCGTCCTGGG.............................	24	1	3.00	3	3	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATCCTTCTGATCGTCCTGGGATCGATC......................	27	1	3.00	3	3	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................CATCCTTCTGATCGTCCTGGGATCGAT.......................	27	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CCTTCTGATCGTCCTGGGATCGATC......................	25	1	2.00	2	2	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CGTCCTGGGATCGATCATGTTGGCCGA...........	27	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTGATCGTCCTGGGATCGAT.......................	20	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................GTTGGCATCCTTCTGATCGTCCTGGG.............................	26	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................GATCGTTGGCATCCTTCTGAT......................................	21	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................CGTCCTGGGATCGATCAT....................	18	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................CGTCCTGGGATCGATCATGTTGGC..............	24	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................CCTGGGATCGATCATGTTGGCC.............	22	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................GATCGATCATGTTGGCCGA...........	19	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................GTCCTGGGATCGATCATGTTGGCC.............	24	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GATCGTCCTGGGATCGATCATGTTGGCC.............	28	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CGTCCTGGGATCGATCATGTTGGCCGAC..........	28	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................GATCGATCATGTTGGCCGAC..........	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CCTTCTGATCGTCCTGGGAT...........................	20	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................CGTTGGCATCCTTCTGATCGTC..................................	22	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GCATCCTTCTGATCGTCC.................................	18	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TTCTGATCGTCCTGGGAT...........................	18	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GGCATCCTTCTGATCGTCCTGGGAT...........................	25	1	1.00	1	1	0	0	0	0	0

droAna3

A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCGTTGGTATCCTCCTGATCGTTTTGGGATCGATTATGTTATCCGATCT--------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................................................................................................................................................................................................................................................................CGTTGGTATCCTCCTGATCGTTTTGGGA............................	28	1	5.00	5	2	0	0	0	3	0
...................................................................................................................................................................................................................................................................................................GTATCCTCCTGATCGTTTTGGGAT...........................	24	1	2.00	2	0	0	0	0	2	0
..................................................................................................................................................................................................................................................................................................GGTATCCTCCTGATCGTTTTGGGAT...........................	25	1	2.00	2	0	1	1	0	0	0
.....................................................................................................................................................................................................................................................................................................ATCCTCCTGATCGTTTTGGGAT...........................	22	1	2.00	2	0	0	0	0	2	0
...................................................................................................................................................................................................................................................................................................GTATCCTCCTGATCGTTTTGGGATCGA........................	27	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................GTTGGTATCCTCCTGATCGTTTTGGG.............................	26	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................CGTTGGTATCCTCCTGATCGTTTTGGGAT...........................	29	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CGTTTTGGGATCGATTATGTTATCCGAT..........	28	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TCGTTGGTATCCTCCTGATC.....................................	20	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................CGTTGGTATCCTCCTGAT......................................	18	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TCGTTGGTATCCTCCTGAT......................................	19	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATCCTCCTGATCGTTTTGGG.............................	20	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................GTTGGTATCCTCCTGATCGT...................................	20	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GTTGGTATCCTCCTGATCGTTTTG...............................	24	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................CCTGATCGTTTTGGGATCG.........................	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................CGTTGGTATCCTCCTGATC.....................................	19	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................GTTGGTATCCTCCTGATCGTTTTGGGAT...........................	28	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATCCTCCTGATCGTTTTGGGATC..........................	23	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................GATCGTTGGTATCCTCCTGAT......................................	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................ATCGTTTTGGGATCGATTATGTTATC..............	26	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CGATTATGTTATCCGATC.........	18	1	1.00	1	0	1	0	0	0	0

droBip1

GTC-GAT----ATAATCAAA-----------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------C---------AAACATTTCA--------------------------------TA----CTT-GTATTTCCAGATCGTCGGCATCCTTCTGATCGTTTTGGGATCGATTATGTTATCCGATCT--------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCGTTGGCATCCTCCTGATCGTGCTGGGCTCGATCATGTTGTCCGATTG-TCCGAT-	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAA-T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTAC--------------------------------------TAT-CTTTATCCAGATCGTTGGCATCCTTCTGATCGTGCTGGGCTCGATCATGTTGTCCGATCT--------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCA-TAA----ATCTCTTTTTTAAATA-------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTAATAAA--------------TAATCATAG----TTGAAA-ATATTCTGAAATAATAAACATTTTTTCATTTTAATCTTGAACTTTTTGA---TTCGTTTAGATCGTTGGCATCCTTCTGATCGTGCTGGGCTCGATTATGTTGTCCGATCT--------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAG-TCATC--------G---------------------------------------------------------------------------------------------------------------------------------------AAGCCTTTGACTAACATATGT-------------------------AGCT---------A----------ATTTTCGTA--------------------------------------TAT-TCCATTGCAGATATGCGGCATTTTGCTTATCACGTTCGGCTCCATTATGGTGTC-GACCA--------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATT-ATA-----TAATC--------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------C---------AAAAATCGTA--------------------------------------TAT-TTGTTTCCAGATCGTTGGCATCCTTCTGATCGTGCTGGGCTCGATCATGTTGTCCGACCT--------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAA-TGT----ACAACTAAA----------------------------------------------------------------------------------------------------------------------------------------TTCCAAAATAAAAGTTATAAGTT---------------------------------ATTT----------ATTGTA--------------------------------------CAC-TTTTTTACAGATCGTGGGAATCCTTTTGATCGTGCTGGGCTCGATCATGTTGTCGGATCT--------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TAT-TATTTGTATTATTATT-----------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------A---------ATAAATTTTA--------------------------------------TCTTTTTTCCACAGATCGTTGGCATCCTTCTGATCGTGCTGGGCTCGATTATGTTATCCGATCT--------	Size	Hit Count	Total Norm	Total
No Reads

dm3

A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCGTTGGCATCCTACTGATCGTGTTGGGCTCGATCATGCTGTCCGATCT--------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................................................................................................................................ATCCTACTGATCGTGTTGGGCTCGAT.......................	26	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GTTGGCATCCTACTGATCGT...................................	20	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................CTACTGATCGTGTTGGGCT...........................	19	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................CGTTGGCATCCTACTGATCGT...................................	21	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TTGGCATCCTACTGATCGTGTTGGGC............................	26	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GCATCCTACTGATCGTGTTGG..............................	21	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................................................................................................................................................ATCCTACTGATCGTGTTGGGCT...........................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................CGTTGGCATCCTACTGATCGTGTTG...............................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................CGTTGGCATCCTACTGATCGTGTT................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GTTGGCATCCTACTGATCGTGTTGGGC............................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................CTACTGATCGTGTTGGGCTCGAT.......................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TCCTACTGATCGTGTTGGGCTCGATCA.....................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GGCATCCTACTGATCGTGTTGG..............................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GCATCCTACTGATCGTGTTGGGC............................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCGTCGGCATCCTCCTGATCGTGCTGGGATCCATCATGCTGTCCGATCT--------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................................................................................................................................................................................................................................ATCCTCCTGATCGTGCTGGG.............................	20	1	11.00	11	0	0	10	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATCCTCCTGATCGTGCTGGGA............................	21	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GGCATCCTCCTGATCGTGCTGGG.............................	23	1	3.00	3	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATCCTCCTGATCGTGCTGG..............................	19	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GTCGGCATCCTCCTGATCGTGCT................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................CATCCTCCTGATCGTGCTGGG.............................	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GTCGGCATCCTCCTGATC.....................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATCCTCCTGATCGTGCTGGGATCC.........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GTCGGCATCCTCCTGATCGTGC.................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATCCTCCTGATCGTGCTGGGAT...........................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATCCTCCTGATCGTGCTGGGATC..........................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GTCGGCATCCTCCTGATCGTGG.................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCGTCGGCATCCTCCTGATCGTGCTGGGATCGATCATGCTGTCCGATCT--------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................................................................ATCCTCCTGATCGTGCTGGG.............................	20	1	3.00	3	0	2	1	0
................................................................................................................................................................................................................................................................................................................CGTGCTGGGATCGATCATGCTGTCCGAT..........	28	1	1.00	1	0	1	0	0
..............................................................................................................................................................................................................................................................................................CGTCGGCATCCTCCTGATC.....................................	19	1	1.00	1	1	0	0	0
.....................................................................................................................................................................................................................................................................................................ATCCTCCTGATCGTGCTGGGATC..........................	23	1	1.00	1	0	1	0	0
.....................................................................................................................................................................................................................................................................................................ATCCTCCTGATCGTGCTGGGATCG.........................	24	1	1.00	1	0	1	0	0
...................................................................................................................................................................................................................................................................................................................GCTGGGATCGATCATGCTGTCCG............	23	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................................................................................................CCTGATCGTGCTGGGATCGATCATGC..................	26	1	1.00	1	0	1	0	0
.....................................................................................................................................................................................................................................................................................................ATCCTCCTGATCGTGCTGG..............................	19	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................CTGGGATCGATCATGCTGTCCGAT..........	24	1	1.00	1	0	1	0	0

droYak3

AAG-TATCT------------------------------------------------------------------------------------------------------------------------------------------------A---------------------AATTATGGCTGGTA--------------AACTTACTT----ACTTAT-AATCCG--C--------------------------------------CGA-CTAATTCCAGATTGTTGGCATCCTCCTTATCGTGCTGGGCTCGATCATGTTATCCGATCT--------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................................................................................................................................................................................CCTCCTTATCGTGCTGGGCTC..........................	21	1	11.00	11	0	7	0	0	1	0	3	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTTATCGTGCTGGGCTCGAT.......................	20	1	5.00	5	0	4	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CCTCCTTATCGTGCTGGGCTCGAT.......................	24	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
........................................................................................................................................................................................................................................................................................................CTCCTTATCGTGCTGGGCTC..........................	20	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATCCTCCTTATCGTGCTGGGCTC..........................	23	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATCCTCCTTATCGTGCTGGGCT...........................	22	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................CCTTATCGTGCTGGGCTCGAT.......................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CCTCCTTATCGTGCTGGGCTCG.........................	22	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TCCTTATCGTGCTGGGCTC..........................	19	1	2.00	2	0	1	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GGCATCCTCCTTATCGTGCTGGGCTC..........................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TGGCATCCTCCTTATCGTGCTGGGCC...........................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CGTGCTGGGCTCGATCATGTT.................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GTTGGCATCCTCCTTATCGT...................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GTTGGCATCCTCCTTATCGTGCTGGGCT...........................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CCTCCTTATCGTGCTGGGCC...........................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GCATCCTCCTTATCGTGCTGGGCTCGAT.......................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................CTCCTTATCGTGCTGGGCTCGAT.......................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TATCGTGCTGGGCTCGAT.......................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................CCTTATCGTGCTGGGCTCGA........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CCTCCTTATCGTGCTGGGCTCGAA.......................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................GATTGTTGGCATCCTCCTT........................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TCCTTATCGTGCTGGGCTCG.........................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................GGCATCCTCCTTATCGTGCTGGGCTCGAT.......................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................TCCTCCTTATCGTGCTGGGCTC..........................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATCCTCCTTATCGTGCTGG..............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GTTGGCATCCTCCTTATCGTGCTGGGCTC..........................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................CATCCTCCTTATCGTGCTGG..............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TTGGCATCCTCCTTATCGTGCTGGGCTC..........................	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CCTCCTTATCGTGCTGGGCT...........................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTTATCGTGCTGGGCTCG.........................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0

droEre2

A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCGTTGGCGTCCTCCTGATCGTGCTGGGTTCGATCATGTTGTCCGATCT--------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................................................................................................................................................................................................................GTCCTCCTGATCGTGCTGGGTTCGAT.......................	26	1	5.00	5	2	0	0	0	2	1	0
.............................................................................................................................................................................................................................................................................................................GATCGTGCTGGGTTCGAT.......................	18	1	4.00	4	1	0	0	0	2	1	0
.....................................................................................................................................................................................................................................................................................................GTCCTCCTGATCGTGCTGGGTTC..........................	23	1	4.00	4	3	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................GTCCTCCTGATCGTGCTGGGT............................	21	1	3.00	3	0	0	0	0	1	2	0
............................................................................................................................................................................................................................................................................................ATCGTTGGCGTCCTCCTGATCGTGC.................................	25	1	2.00	2	0	0	0	0	2	0	0
..............................................................................................................................................................................................................................................................................................CGTTGGCGTCCTCCTGATC.....................................	19	1	2.00	2	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................ATCGTGCTGGGTTCGATCATGTT.................	23	1	2.00	2	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................GGGTTCGATCATGTTGTCCG............	20	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................GTCCTCCTGATCGTGCTGGGTT...........................	22	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................CGTTGGCGTCCTCCTGATCGTGCT................................	24	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................GTTGGCGTCCTCCTGATCGTGCTGGGTT...........................	28	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................GTCCTCCTGATCGTGCTGGGTTCG.........................	24	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................CTCCTGATCGTGCTGGGTTCGAT.......................	23	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................GATCGTGCTGGGTTCGATCATGTT.................	24	1	1.00	1	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................GTGCTGGGTTCGATCATGTT.................	20	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................ATCGTTGGCGTCCTCCTGATCGT...................................	23	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................GTCCTCCTGATCGTGCTGG..............................	19	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................GATCGTTGGCGTCCTCCTGAT......................................	21	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................CTCCTGATCGTGCTGGGTT...........................	19	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TGGCGTCCTCCTGATCGTGCTGGGTTC..........................	27	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................CTGATCGTGCTGGGTTCGATCATGTTGT...............	28	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................GTCCTCCTGATCGTGCTGGGTTCGATC......................	27	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................GATCGTGCTGGGTTCGATCATGT..................	23	1	1.00	1	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................CGTTGGCGTCCTCCTGATCGT...................................	21	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................CCTGATCGTGCTGGGTTCGATC......................	22	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................CGTTGGCGTCCTCCTGATCG....................................	20	1	1.00	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................CGTGCTGGGTTCGATCATGTTGTCC.............	25	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................ATCGTGCTGGGTTCGATCATGTTGTCC.............	27	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................CGTGCTGGGTTCGATCATGTTGT...............	23	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................GCTGGGTTCGATCATGTTGTCCGAT..........	25	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................CGTGCTGGGTTCGATCATGTTGTC..............	24	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................CGTGCTGGGTTCGATCATGTT.................	21	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................ATCGTGCTGGGTTCGATC......................	18	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................TGGCGTCCTCCTGATCGTGCTGG..............................	23	1	1.00	1	1	0	0	0	0	0	0

dvi_875

scaffold_10324:1034843-1034993 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-19.4	-19.4	-19.2