ID:

dvi_8749

 Coordinate:

scaffold_12928:3855297-3855447 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.2 -15.7 -15.5 -15.5

Flybase annnotation

exon [dvir_GLEANR_17379:1]; CDS [Dvir\GJ16874-cds]; intron [Dvir\GJ16874-in]

Repeatable elements

NameClassFamilyStrand
DMR_DVUnknownUnknown-
mature
star
  1. scaffold_12875:8370729-8370754 +
  2. scaffold_12875:8371936-8371961 +
  3. scaffold_12875:8372236-8372261 +
  4. scaffold_12875:8373024-8373049 +
  5. scaffold_12875:8373324-8373349 +
  6. scaffold_12928:3848793-3848818 +
  7. scaffold_12928:3849201-3849226 +
  8. dvi_8749  scaffold_12928:3855378-3855403 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTCCGCCGAAAATAGTGTCCGATTTTGGAATTTTTTACAACTTTCGACTCGTAAGGATCAGTTCTATCGATTGGCATCAAAAACGGGGAAATCCAAAATTTTGACCCAAATCGCCAAAATAGCGAATCACATTTTTTTCAACATCGAGGTCGGTGCGAAAATCGAATACCTCGGGTAATAGCTGGAATTTTATACCATTTTTGACTCGTAAGGATCAGATCGACAAAATGGCAAGGGGTTACATCACGCTT
**********************************************************************...(((((.....(((........(((((..(((......((((.......)))).))).)))))........))).....))))).********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060679
140x9_testes_total
 SRR060657
140_testes_total
 V116
male body		 SRR060689
160x9_testes_total
 M047
female body
 M027
male body		 SRR060681
Argx9_testes_total
 SRR060674
9x140_ovaries_total
 SRR060678
9x140_testes_total
 SRR060677
Argx9_ovaries_total
 SRR060673
9_ovaries_total
 M061
embryo
 GSM1528803
follicle cells		 SRR060665
9_females_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060683
160_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 M028
head
 SRR060662
9x160_0-2h_embryos_total
 SRR060688
160_ovaries_total
 V053
head
 SRR060654
160x9_ovaries_total
 SRR060655
9x160_testes_total
 SRR060656
9x160_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060670
9_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 V047
embryo
................................................TCGTAAGGATCAGTTCTATCGATTGGC................................................................................................................................................................................ 27 0 20 3.00 60 49 0 0 5 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CTCGTAAGGATCAGATCGACAAA........................ 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCGTAAGGATCAGATCGACAAAATGGC................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCGTAAGGATCAGATCGACAAAA....................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTGGCATCAAAAACGGGGAAATCCAAAA......................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCGTAAGGATCAGATCGACAAAAT...................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCTTAAGGATCAGATCGACAAAATG..................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TAGGGATCAGATCGACAA......................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCGTAAGGATCAGATCGACAAAATGG.................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TTACAACTTTCGACTCGTAAGG................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TCGTAAGGATCAGTTCTATCGATTGG................................................................................................................................................................................. 26 0 20 0.60 12 0 0 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................................ACCTAGGGATCAGATCGACA.......................... 20 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................AGATCGACAAAATGGCAAGGGG............. 22 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTATACCATTTTTGACTCGTAAGGAT.................................... 26 0 20 0.35 7 0 0 0 0 0 0 0 4 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................CCTAGGGATCAGATCGACAG......................... 20 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TCGTAAGGATCAGTTCTATC....................................................................................................................................................................................... 20 0 20 0.30 6 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TCGTAAGGATCAGTTCTATCG...................................................................................................................................................................................... 21 0 20 0.30 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TCGTAAGGATCAGTTCTATCGATT................................................................................................................................................................................... 24 0 20 0.25 5 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TCGTAAGGATCAGTTCTATCGA..................................................................................................................................................................................... 22 0 20 0.25 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGATCAGTTCTATCGATTGGCA............................................................................................................................................................................... 26 0 20 0.20 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGATCAGTTCTATCGATTGGC................................................................................................................................................................................ 25 0 20 0.20 4 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.TCCGCCGAAAATAGTGTCCGATTTTGG............................................................................................................................................................................................................................... 27 0 17 0.18 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GCCGAAAATAGTGTCCGATTTTGGAAT............................................................................................................................................................................................................................ 27 0 17 0.18 3 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TAGGGATCAGATCGACAGAC....................... 20 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TGGAATTTTATACCATTTTTGAC.............................................. 23 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TTTTTTTAGACATCGAGGTCGGTGC............................................................................................... 25 2 20 0.15 3 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGGATCAGTTCTATCGATTGGC................................................................................................................................................................................ 24 0 20 0.15 3 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TTTTTTTCAACATCGAGGTCGGTGCG.............................................................................................. 26 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.TCCGCCGAAAATAGTGTCCGATTTTGGAA............................................................................................................................................................................................................................. 29 0 17 0.12 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................CATCGAGGTCGGTGCGAAAATCC....................................................................................... 23 1 18 0.11 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TTTTCAACATCGAGGTCGGTGCGAA............................................................................................ 25 0 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TTTCAACATCGAGGTCGGTGCGAAAA.......................................................................................... 26 0 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TTTTCAACATCGAGGTCGGTGCGA............................................................................................. 24 0 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TTTCAACATCGAGGTCGGTGCGAA............................................................................................ 24 0 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TTTTTTCAACATCGAGGTCGGTGC............................................................................................... 24 0 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TCGACAAAATGGCAAGGGGT............ 20 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TATACCATTTTTGACTCGTAAGG...................................... 23 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........AAATAGTGTCCGATTTTGGAA............................................................................................................................................................................................................................. 21 0 20 0.10 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................CAACATCGAGGTCGGTGCGAAAATCG....................................................................................... 26 0 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTATACCATTTTTGACTCGTAAGGATCA.................................. 28 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TTTTTTCAACATCGAGGCCGGTG................................................................................................ 23 1 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TCCAAAATTTTGACCCAAATCGCCAA...................................................................................................................................... 26 0 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AACATCGAGGTCGGTGCGAAAATC........................................................................................ 24 0 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................CGGGAAATCCTAAATTTTG.................................................................................................................................................... 19 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................AAAATTTTGACCCAAATCGCC........................................................................................................................................ 21 0 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...CGCCGAAAATAGTGTCCGCTTTTGT............................................................................................................................................................................................................................... 25 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..CCGCCGAAAATAGTGTCCGATTTTGGAA............................................................................................................................................................................................................................. 28 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..CCGCCGAAAATAGTGTCCGATTTTGG............................................................................................................................................................................................................................... 26 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.TCCGCCGAAAATAGTGTCCGATTTT................................................................................................................................................................................................................................. 25 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...CGCCGAAAATAGTGTCCGATTTTGGAAT............................................................................................................................................................................................................................ 28 0 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TGGAATTTTATACCATTTTTGACTCG........................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATATTTGACTCGTAAGGATCAGAT............................... 24 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AATGGCAAGGGGGTACATCAC.... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........ATAGTGTCCGATTTTGGAAT............................................................................................................................................................................................................................ 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTTTATACCATTTTTGACTCGTAAGG...................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTATACCATTTTTGACTCGTAAGGATC................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................ATTTTATACCATTTTTGACTC............................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................ATCGAGGTCGGTGCGAAAATCGAAT.................................................................................... 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TCAGTTCTATCGATTGGCATCA............................................................................................................................................................................ 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGATCAGTTCTATC....................................................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTTATACCATTTTTGACTCGT.......................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................ACTCGTAAGGATCAGTTCTATCGATT................................................................................................................................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTATACCATTTTTTACTCGTAAGCTTC................................... 27 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGGATCAGTTCTATCGATTGGCATC............................................................................................................................................................................. 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TCGACAAAATGGCAAGGGGTTACATC...... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GACAAAATGGCAAGGGGT............ 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ATAGCTGGATTTGTACACCA...................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GGAAATAGTGTTCGATTTT................................................................................................................................................................................................................................. 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAATGGCAAGGGGTTACATCACGCTT 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................ATACCATTTTTGACTCGTAA........................................ 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTATACCATTTTTGCCTCGTAAGGATC................................... 27 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................AAGGATCAGTTCTATCGATTGGC................................................................................................................................................................................ 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................CGCGTAAGGATCAGTTCTATCGATT................................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GATCAGTTCTATCGATTGGCATCAA........................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GAATTTTATACCATTTTTGACTC............................................ 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................AGTTCTATCGATTGGCATCAA........................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................TTATACCATTTTTGACTCGTAA........................................ 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........AAAATAGTGTCCGATTTTGG............................................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TCGACAAAATGGCAAGGGGTT........... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................GACTCGTAAGGATCAGTTCTATCGATT................................................................................................................................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGGATCAGTTCTATCGA..................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................CTCGTAAGGATCAGTTCTATCGA..................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........AAATAGTGTCCGATTTTGGAAA............................................................................................................................................................................................................................ 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................GATCAGTTCTATCGATTGGCATCAAA.......................................................................................................................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGGATCAGTTCTATCGATTG.................................................................................................................................................................................. 22 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CAAAATGGCAAGGGGTTACATC...... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AATGGCAAGGGGTTACATC...... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAGGATCAGTTCTATCGATTGGCATC............................................................................................................................................................................. 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..CCGCCGAAAATAGTGTCCGAT.................................................................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TACCATTTTGGACTCGTAAGGATCAGA................................ 27 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................TATACCATTTTGGACTCGTAAGGATCAAA................................ 29 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATTTTTGACTCGTAAGGATCA.................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................TCGTAAGGATCAGTTCTATCGATTGGCA............................................................................................................................................................................... 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CAAAATGGCAAGGGGTTACAT....... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTATACCATTTTTGACTCGTAAGG...................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAATGGCAAGGGGTTACATCACG... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GAGGCGGCTTTTATCACAGGCTAAAACCTTAAAAAATGTTGAAAGCTGAGCATTCCTAGTCAAGATAGCTAACCGTAGTTTTTGCCCCTTTAGGTTTTAAAACTGGGTTTAGCGGTTTTATCGCTTAGTGTAAAAAAAGTTGTAGCTCCAGCCACGCTTTTAGCTTATGGAGCCCATTATCGACCTTAAAATATGGTAAAAACTGAGCATTCCTAGTCTAGCTGTTTTACCGTTCCCCAATGTAGTGCGAA
**********************************************************************************************...(((((.....(((........(((((..(((......((((.......)))).))).)))))........))).....))))).********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060686
Argx9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060679
140x9_testes_total
 SRR060675
140x9_ovaries_total
 SRR060670
9_testes_total
 SRR1106729
mixed whole adult body
 SRR060685
9xArg_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060683
160_testes_total
 SRR060655
9x160_testes_total
 SRR060678
9x140_testes_total
 SRR060689
160x9_testes_total
 SRR060656
9x160_ovaries_total
 M047
female body
 SRR060659
Argentina_testes_total
 M061
embryo
 SRR060660
Argentina_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060658
140_ovaries_total
 SRR060673
9_ovaries_total
 V116
male body		 SRR060668
160x9_males_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060671
9x160_males_carcasses_total
 SRR060657
140_testes_total
 SRR060664
9_males_carcasses_total
 SRR060680
 9xArg_testes_total
 SRR1106730
embryo_16-30h
 V047
embryo
.....................................................................................................................................AAAAGGTTGTAGCTCCAG.................................................................................................... 18 1 20 3.70 74 3 10 10 0 13 0 5 3 6 2 7 2 6 2 0 0 2 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0
....................................................................................................................................AAAAAGGTTGTAGCTCCAG.................................................................................................... 19 1 20 2.25 45 0 2 6 1 5 0 2 3 1 6 1 8 1 6 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AAAAAAGGTTGTAGCTCCAG.................................................................................................... 20 1 20 1.20 24 6 3 0 0 2 0 0 4 0 1 1 0 1 2 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1
...................................................................................................................................................................................................GTAAAACCTGAGCATTCCTAGTCTAGCC............................ 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGAGCATTCCTAGTCTAGCTGTTTT....................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CGGCTTTTATCACAGGCTAAAACCTTAAAAAA....................................................................................................................................................................................................................... 32 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GAGGTGGCTTTGATCGCA......................................................................................................................................................................................................................................... 18 3 20 0.95 19 0 14 0 0 0 0 2 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AAAAAAAGTTGTAGCTCCAG.................................................................................................... 20 0 11 0.45 5 1 1 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................AAAAAAGTTGTAGCTCCAG.................................................................................................... 19 0 11 0.36 4 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................AAAGGTTGTAGCTCCAGC................................................................................................... 18 1 20 0.30 6 1 0 3 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................CTAACCGTAGTTTGTGCGTCT.................................................................................................................................................................. 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AAAATAGGTTGTAGCTCCAG.................................................................................................... 20 2 20 0.25 5 0 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................ACAAGGTTGTAGCTCCAG.................................................................................................... 18 2 20 0.20 4 0 0 2 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AAAAAGTTGTAGCTCCAG.................................................................................................... 18 0 12 0.17 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................GCTGAGCATTCCTAGTCAAGATA........................................................................................................................................................................................ 23 0 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AAACAAGGTTGTAGCTCCAG.................................................................................................... 20 2 20 0.10 2 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................AAAATGGTTGTAGCTCCAG.................................................................................................... 19 2 20 0.10 2 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAAATATGGTAAAAACTGAGCATTCCTA.................................... 28 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AATCTGGTAAAAACGGAGCC.......................................... 20 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................AACAAGGTTGTAGCTCCAG.................................................................................................... 19 2 20 0.10 2 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CCACGCTTTTAGCTTAAGGA................................................................................ 20 1 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AAATATGGTAAAAACTGAGCATTCCTA.................................... 27 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CGTTCCCCGGTGTAGTGCGAA 21 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AAAATAGGTTGTAGCTCC...................................................................................................... 18 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................AAAAAAGTTGTAGCTCCA..................................................................................................... 18 0 11 0.09 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................AAAAAAGTTGTAGCTCCAGC................................................................................................... 20 0 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................GCTGAGCATTCCTAGTGAAGATC........................................................................................................................................................................................ 23 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................TCCAGCCACGCTTTTAGCTTATGAA................................................................................ 25 1 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................AAAAGTTGTAGCTCCAGC................................................................................................... 18 0 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AAAAAAAGTCGTAGCTCCAG.................................................................................................... 20 1 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AAAAAATGTTGTAGCTCCAG.................................................................................................... 20 1 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................CCCGTTCCCCAATGTAGTGCGA. 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AAAAGGTTGTAGCTCCGG.................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AAACAGTTGTAGCTCCAGC................................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................ACAAAAGGTTGTAGCTCCAG.................................................................................................... 20 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CAAAAGGTTGTAGCTCCAG.................................................................................................... 19 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GGTAAAAACTGAGCATTCCTAGTC................................. 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTAAAAACTGAGCATTCCTA.................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AAAAAAGGTTGTAGCTCCA..................................................................................................... 19 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................ACACAGTTGTAGCTCCAG.................................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................AAAAAGGTTGTAGCTCCA..................................................................................................... 18 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TCACAGGCTAAAACCTTAAAA......................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................GCGCATTCCTAGTCAAGATA........................................................................................................................................................................................ 20 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AAAAAAGGTTGTAGCTCC...................................................................................................... 18 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TAAAATATGGTAAAAACTGAGCATTCC...................................... 27 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GAGGTGGCTTTGATCGCAGG....................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................AAAAAAAATTGTAGCTCCAG.................................................................................................... 20 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................AAAAAAATTGTAGCTCCAG.................................................................................................... 19 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AAAAAATTGTAGCTCCAG.................................................................................................... 18 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................AAAGCTGAGCATTCCTAGTTA............................................................................................................................................................................................. 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................AAAAAGGTCGTAGCTCCAG.................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CTAGTCAAGATAGCTAACCGTAGTTTTT........................................................................................................................................................................ 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........TTATCACAGGCTAAAACCTTA............................................................................................................................................................................................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:3855247-3855497 + dvi_8749 CTCCGCCGAAAATAGTGT-CCGATT--T----TGGAATT------------TT-TTA----------------------------------------------------------CAACTTTCGACTCGTAAGGATCAGTTCT--------------ATCGATTGGCATCAAAAACGGGG------AAAT-CCAAAAT------------------------------------------------------TTTGACCCAAATCGCCAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCGAATCACATTTTTTTCAA---------------CATCGAGGTCGGTGCGAAAATCGAATACCTCGGG-------------------------------------------------------------------------------------------------------------------TAATAGCT----GGAATTT-------------------TATACC---ATTTTTGACTCGTAAGGA--T---CAGATCGACA---------------------------AA--ATG------------------------------GCAAGGGGTTAC-ATCA---CGCTT
droMoj3 scaffold_6482:1748925-1749078 + AAATTTTAA------------C-AA--------------------------------------------------------------------------------------------AAATCGAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATAAAATACATATGAGTCAACATTAAAAATTTAAAGATTCTACCTCTTA--AGGTGTAGGAGATATAATTAAATAAATTATTTTTGATAAGATTTTTAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATA---------------------------AA--AAG------------------------------ATAACGGAATGA-GTTA---TCTAT
droGri2 scaffold_14906:12982044-12982178 + CTAAAGCCC------------C----------------------------------------------------------------------------------CAACCAAACTT-------------------------------------------------------------------------------------------------------------------------------------------------------CTGAGATAAGAATCTTTTCTTATTTATTATCGGAGCACTGCGAA----------------------------------------------------------------------------------------------------ATAGATTTAGTAAGAATTGAATTTCTGAC---------------------TCAGGCCTGGAGGAGTTATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------TAAGGAACGAT-AG---ACCTTTT
droWil2 scf2_1100000009382:308-521 + TGGCCGA--------TTT--------------TTGAAAT------------TC-ATG----------------------------------------------------------TATCAGTTTATCCATCAGCAAATTGACT--------------TTCAGTTGGCATTAAAACCTCA------AAAAG--TAAAAT------------------------------------------------------TTTCATCTTTTCTGATAAAA-----------------------------------------------------------------------------------------------TCAC------------------------------------------GATTTAGTAAAAATTATGTTT-----------------------------------------------------------------------------------------------------------------------TTTTA---------------CATAGAAAATCGCT----------------------------AAAATCTCAAATATTCTCACCT---------------------------------AACCCCAACTTTGTGAACCTG-------------------------------TAATAGTG----ACA-----------------------------------------------------------------------------------------------------------------------------------------AT-TT-TTGA---CCGAT
dp5 Unknown_singleton_3492:45-164 - CAACTGTCC-----------CA-GA------------------A----------------------------------------------------------------------------------TCGCGAGGATCCGGACT--------------GTCGATCGGCATCAAAATCTCGGCTTCGAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------GAGGCCGATTTTT-----------TGAAAATTTA------------------------------------------------------------------------------------------------------------------------------------------------------------ATGATG---------------TAA---------------CCATCATGTTGGGTGCAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCG
droPer2 scaffold_1016:1605-1741 - TTACTTCAG------------T--A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCGAGCAGTGCAACCAGGGGACATGGAGAG-------------------------------------------------------------------------------------------------------------------TAGTTGCT----ACATTGCTACATTAAAACGCT-------TCCT---GCTTGTAGCTCGTAATGC--A---CATGTTGAAAGTGTTGAACTATGGAGTTACAT-----------------------------------------------------G-CCGG---AACAT
droAna3 scaffold_13250:525477-525689 + TTTTTTACC------------ACTT---T---T----------ACTGGCAATA-AT-G-----------------GGCTGATTTTTATGTCAAAATGGTACCTCCGACTTTACAA------------------------------------------------CCGCGCCAAAA------------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAA--------------------------AATCGCATATTTTTCAA---------------TATTGCTT--CGTTCATC-----------------------------TGCACAC----------------------------------------------------------------GAAACTAATATTTT--AAATAAATCATTT---------------CAAT------------------------------TTTTTTTATTTCCAATAACACTGTAAG---GCCA------GAT------------TTTACGCACT--------------------------------G-CA--------A-GA---TAACAAT
droBip1 scf7180000396009:10911-11104 - AAAATAG--------TGT-TCAATG--C----TTGAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATTTACATTCAACTTTCGGAAAATTTTTAAGGGTCCAGAGCCTTAA-TTACTGG---------------CGAGAGATTCAAAAATTTTGTGAACTATTTAGTAAA---------------ACG---------------CCATGAAGTTCGGTTCAAA-----------------------TAAATCCTAAAACATTC-----------------------------------------------------------------------------------------------------------------------------------TTTC---AATCTTACTTTATAATAA--T---C-A------------------------------------------------------------------------------AT-CG-TTTA---AACAT
droKik1 scf7180000301573:5704-5942 + CTCCGCGCG------------G-AGAT-ATGT----CGTTTATAGCT----------CGGCGGA-----------------G---------------------------------------TTATGTCG------------CTTTAAAGTGGCATATCTCC----GTGACGA------AA------AATATACATAATTTAGCTCAAAAAGAGATTAAAAAAATGTATTTGGGGCATTCCACAGAAAAAAAACTTAAACTT-----CTC-TACAAAAAATTTTTTTTTTTCAACATAGTAACAT----------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGA----AAA-------------------GGTCCA----ATTAAATTTAAAG--------------------------GAT------------TTTG------C---------------------------------CCATACAT--A-TA---TCGATTT
droFic1 scf7180000454107:1712870-1713048 + GAAACTAAA------------A-AATT-TTGAT----AA----ATCGCGAGCGAA--A-----------------TGTTTGCTGGTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATAATATTTTATTTTATAAATTCTTCAAAA---------------------TCGGATAGTTTTTGTAATCGGAAAGTTTTGTATTGTTCCGATTT---------------------------------AAATTG------------------------------------------------------------------------------------AATGTGAATAGCATTGACTGCTAA---------------------------------------------------TG------------------------------CAAAGTGCCTTT-ACTGAGCTTAGT
droEle1 scf7180000491104:940819-940909 - TCTTTATCG------------A-TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTCGTTAGTGCGAG---------------T-------------------------------------------------------------------------------------------------------------------TAATAATT----CAAAGTC-------------------ATCTCC---ATTGTTGTCTGCTAATGA------------------------------------------------TG------------------------------GTAAGCGGTTAT-ATTG---TATTT
droRho1 scf7180000778034:24745-24993 + ATTGTGAAC------------GATT---T---C-GAAAT------------TA-AT-------------------GTTTTACTTTTAT---------------------------AAAAATTGGACG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTATATC--ATATAGCAGCCA------------------------------------------------------------------------------------------------------------------------------AAAGGAACGATCGAAAATTGAGCTGCATTGCT------TTCAAGCATCCAAAT--------TGA-------------------AAATAGAGTATTACATTTTT----GTAACAGCTTCAAGG---------------------GTATATAAGTTTCGGCTTGCGTAAGTCTGCTACCTTTCCTGTTT---------------------TTATATTAATAT---------------------TCA------AGTATACATAAAAAGGATTT--------------------------------------------------------------------------------------------------------------------------------------------------------CAATTTT-ATTT---ATTGT
droBia1 scf7180000302168:72085-72287 + TTCGGAA--------TTT--------------TCAAACTTTTCACTTGCAA---------GGGATTTCCTTTGAATTTTCACTTGTAA---------------------------AAAAATGGATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATTATCTATATGGAGCATCACTTGTTC-------------------------------------------------------------------TTCACTC-----------------------------------------------------------------------------------------------------------------------------GCA-------TCTG---TCATGTCACTCAATATTC--A---CCAGGTGATTCAATA--------GTTAAATTT------------TTTTTAACTAAAGGGAAGAAGAGATAAGAG-----AG----A-TA---AAATAAT
droTak1 scf7180000415390:42270-42465 + GATTGTGGG------------A-AAAT-CTTTT----AC----ACTGATAACAAA--A-----------------A--------------------------------------------------------------AGTGG--------------ATCAAATGATAACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATGGTGAAATTCCGTATCTACCGAATCACTTGTTAAAAAAATAACTTTT-----TTTTCGA---------------------GAATATCGTGTTTT--TAATAAAGGTATTTT--------AAAA----A-C-------------------TTTTTT---CTTTTACTCAGAAAATGT------AAG--------------------------------------C---------------------------------CGGCATTTCAC-TC---GGTTACT
droEug1 scf7180000408984:270870-270977 + TATGAAAAT------------A-AAAT-GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAGAGCTGGAATTCTATATTTATATGTTTAAAAAAATATTATAAAATGGAGGAGCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACAGAACA--------------------------------A-CG--AAACTATAATTA---TACTC
dm3 chr3L:23028680-23028767 - AACTAAA--------TAACTTAAAG--T----TTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAATTTAATGCTTTCTTTTTCGTGAAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAATT-------------------AACAAA--------------------------------------------------------------------A---------------------------------TTGAAATTTAC-AA---AACGGCT
droSim2 3l:22605650-22605796 - CACAACTGC------------A-AACT-GCAT----TTTTATCATCT----------TGAGGCA--------------------------------------------------------------------------------------------------------CTGACACCACG------AAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAAGTGA------------------------------------------------------------------------------------CGT-GGATTGGTTAGATTTTAGAATTATTTATATTG---------------GTA---------------CCATCTGGTT--------------------------------------AATAAAC-----------------------------------------------------------------------------------------------------------------------------CCAATTTTAACGTG----------------------------------------------------------------------------------------------------A-CAAGAACGTTC-AC-----TGTTT
droSec2 scaffold_26:55513-55596 - TCAAAAAAC------------T--A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------------------------------------------------------------------------------------------------------GTTAA--AACTAGACTGTTA---------------AAATAT-------------------TATA------AT-ATGCTATGCAAAGG--T---CAA--------------A-------------TGAGCATACA--------------------------------GCCA-----------A---AAGTATA
droYak3 2R:2957995-2958150 + GACATACGA------------A-AA-T-T----TAAAAC------------TC-TTA----------------------------------------------------------AAAGAACGCAATCG------------CTTTCGGTTA-----TCTCGATCGCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTATTCGAAAACAAACTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG----------------------------------------------------------------------------------------------TAAT--AGGCGAACCCTTT------------------------------------------TCGT---TTTTTCCGTTTTTAATGC--C---TGTAGAGCAA------AA-------------TCAG----------------------------------------CTAGGC----G-CG---ACATGTT
droEre2 scaffold_251:505-600 - AAAGTAG--------TTCTCCAAAA--C----TAGAATG------------TC-ATA----------------------------------------------------------TAGCGTTGAATTCGTAACAAAATTTCCT--------------ATCGACCTGTATTCA-------------AAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAATTCT-AA---TTTTTTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CTCCGCCGAAAATAGTGT-CCGATT--T----TGGAATT------------TT-TTA----------------------------------------------------------CAACTTTCGACTCGTAAGGATCAGTTCT--------------ATCGATTGGCATCAAAAACGGGG------AAAT-CCAAAAT------------------------------------------------------TTTGACCCAAATCGCCAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCGAATCACATTTTTTTCAA---------------CATCGAGGTCGGTGCGAAAATCGAATACCTCGGG-------------------------------------------------------------------------------------------------------------------TAATAGCT----GGAATTT-------------------TATACC---ATTTTTGACTCGTAAGGA--T---CAGATCGACA---------------------------AA--ATG------------------------------GCAAGGGGTTAC-ATCA---CGCTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................TCGTAAGGATCAGTTCT--------------ATCGATTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27203.00600000000000000000000000000006049000000000500000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGTAAGGA--T---CAGATCGACA---------------------------AA--..........................................................2312.002000000000000000000000000000002000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTAAGGA--T---CAGATCGACA---------------------------AA--ATG------------------------------GC.......................2711.001000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTAAGGA--T---CAGATCGACA---------------------------AA--A.........................................................2311.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................TTGGCATCAAAAACGGGG------AAAT-CCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTAAGGA--T---CAGATCGACA---------------------------AA--AT........................................................2411.001000000010000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTAAGGA--T---CAGATCGACA---------------------------AA--ATG------------------------------G........................2611.001000000000000000000000000000001000000000000000000000000000000000
......................................................TTA----------------------------------------------------------CAACTTTCGACTCGTAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000100000000000000000000000
..............................................................................................................................TCGTAAGGATCAGTTCT--------------ATCGATTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.60120011000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCGACA---------------------------AA--ATG------------------------------GCAAGGGG.................2220.501001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------TATACC---ATTTTTGACTCGTAAGGA--T---...................................................................................................26200.357000000000000000000001002400000000000000000000000000000000000000
..............................................................................................................................TCGTAAGGATCAGTTCT--------------ATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.306000000060000000000000000000000000000000000000000000000000000000
..............................................................................................................................TCGTAAGGATCAGTTCT--------------ATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.306000000000000000000000000000006000000000000000000000000000000000
..............................................................................................................................TCGTAAGGATCAGTTCT--------------ATCGATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.255000000000000000000000000500000000000000000000000000000000000000
..............................................................................................................................TCGTAAGGATCAGTTCT--------------ATCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.255000000000000000000000000000005000000000000000000000000000000000
................................................................................................................................GTAAGGATCAGTTCT--------------ATCGATTGGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.204000000000000000000000000000003000000100000000000000000000000000
................................................................................................................................GTAAGGATCAGTTCT--------------ATCGATTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.204000000000000000000000000000010020010000000000000000000000000000
.TCCGCCGAAAATAGTGT-CCGATT--T----TGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27170.183000000000000000000000000000003000000000000000000000000000000000
....GCCGAAAATAGTGT-CCGATT--T----TGGAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27170.183000000000000000000000000000010010000000100000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----GGAATTT-------------------TATACC---ATTTTTGAC..................................................................................................................23200.153000000000000000000000000000000000000000000000000000000000000003
.................................................................................................................................TAAGGATCAGTTCT--------------ATCGATTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.153000000000000000000000000100020000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTCAA---------------CATCGAGGTCGGTGCG...............................................................................................................................................................................................................................................................................................................2680.131000000000000000000000000000001000000000000000000000000000000000
.TCCGCCGAAAATAGTGT-CCGATT--T----TGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29170.122000000000000000000000000001001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGAGGTCGGTGCGAAAATCC........................................................................................................................................................................................................................................................................................................23180.112200000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCAA---------------CATCGAGGTCGGTGCGAA.............................................................................................................................................................................................................................................................................................................2590.111000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAA---------------CATCGAGGTCGGTGCGAAAA...........................................................................................................................................................................................................................................................................................................2690.111000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCAA---------------CATCGAGGTCGGTGCGA..............................................................................................................................................................................................................................................................................................................2490.111000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAA---------------CATCGAGGTCGGTGCGAA.............................................................................................................................................................................................................................................................................................................2490.111000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTCAA---------------CATCGAGGTCGGTGC................................................................................................................................................................................................................................................................................................................2490.111000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACA---------------------------AA--ATG------------------------------GCAAGGGGT................20200.102020000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACC---ATTTTTGACTCGTAAGG..........................................................................................................23200.102000000000000000000000000200000000000000000000000000000000000000
.........AAATAGTGT-CCGATT--T----TGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000000000010000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---------------CATCGAGGTCGGTGCGAAAATCG........................................................................................................................................................................................................................................................................................................26100.101000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------TATACC---ATTTTTGACTCGTAAGGA--T---CA.................................................................................................28200.102000000000000100000000001000000000000000000000000000000000000000
.............................................................................................................................................................................................T-CCAAAAT------------------------------------------------------TTTGACCCAAATCGCCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26140.071001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------CATCGAGGTCGGTGCGAAAATC.........................................................................................................................................................................................................................................................................................................24140.071000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................AAAAT------------------------------------------------------TTTGACCCAAATCGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.071000100000000000000000000000000000000000000000000000000000000000
..CCGCCGAAAATAGTGT-CCGATT--T----TGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28170.061000000000000000000000000000001000000000000000000000000000000000
..CCGCCGAAAATAGTGT-CCGATT--T----TGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26170.061000000000000000000000000000001000000000000000000000000000000000
.TCCGCCGAAAATAGTGT-CCGATT--T----T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25170.061000000000000000000000000000001000000000000000000000000000000000
...CGCCGAAAATAGTGT-CCGATT--T----TGGAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28170.061000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----GGAATTT-------------------TATACC---ATTTTTGACTCG...............................................................................................................26200.051000000000000000000000000000000000000000000000000000000000000001
...........ATAGTGT-CCGATT--T----TGGAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-------------------TATACC---ATTTTTGACTCGTAAGG..........................................................................................................26200.051000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------TATACC---ATTTTTGACTCGTAAGGA--T---C..................................................................................................27200.051000000000000100000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTT-------------------TATACC---ATTTTTGACTC................................................................................................................21200.051000000000000000010000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGGTCGGTGCGAAAATCGAAT.....................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................TCAGTTCT--------------ATCGATTGGCATCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000001000000000000000000000000000000000000000
................................................................................................................................GTAAGGATCAGTTCT--------------ATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------------------TATACC---ATTTTTGACTCGT..............................................................................................................21200.051000000000000000000000001000000000000000000000000000000000000000
............................................................................................................................ACTCGTAAGGATCAGTTCT--------------ATCGATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................TAAGGATCAGTTCT--------------ATCGATTGGCATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACA---------------------------AA--ATG------------------------------GCAAGGGGTTAC-ATC.........26200.051000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACA---------------------------AA--ATG------------------------------GCAAGGGGT................18200.051000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--ATG------------------------------GCAAGGGGTTAC-ATCA---CGCTT26200.051000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACC---ATTTTTGACTCGTAA............................................................................................................20200.051000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................AAGGATCAGTTCT--------------ATCGATTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................................................GATCAGTTCT--------------ATCGATTGGCATCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTT-------------------TATACC---ATTTTTGACTC................................................................................................................23200.051000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................AGTTCT--------------ATCGATTGGCATCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------TATACC---ATTTTTGACTCGTAA............................................................................................................22200.051000000000000000000000000001000000000000000000000000000000000000
........AAAATAGTGT-CCGATT--T----TGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACA---------------------------AA--ATG------------------------------GCAAGGGGTT...............21200.051000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................GACTCGTAAGGATCAGTTCT--------------ATCGATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................GTAAGGATCAGTTCT--------------ATCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................CTCGTAAGGATCAGTTCT--------------ATCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000100000000000000000000000
.........AAATAGTGT-CCGATT--T----TGGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000100000000000000000000000000000000000000000000000000000000
.....................................................................................................................................GATCAGTTCT--------------ATCGATTGGCATCAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................TAAGGATCAGTTCT--------------ATCGATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------------------AA--ATG------------------------------GCAAGGGGTTAC-ATC.........22200.051000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--ATG------------------------------GCAAGGGGTTAC-ATC.........19200.051000010000000000000000000000000000000000000000000000000000000000
..................................................................................................................................AAGGATCAGTTCT--------------ATCGATTGGCATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000100000000000000000000000000000000000000000000000000000000000
..CCGCCGAAAATAGTGT-CCGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGACTCGTAAGGA--T---CA.................................................................................................21200.051000000000100000000000000000000000000000000000000000000000000000
..............................................................................................................................TCGTAAGGATCAGTTCT--------------ATCGATTGGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------------------AA--ATG------------------------------GCAAGGGGTTAC-AT..........21200.051000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------TATACC---ATTTTTGACTCGTAAGG..........................................................................................................24200.051000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--ATG------------------------------GCAAGGGGTTAC-ATCA---CG...23200.051000000000000000000000000000000000000001000000000000000000000000
droMoj3
AAATTTTAA------------C-AA--------------------------------------------------------------------------------------------AAATCGAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATAAAATACATATGAGTCAACATTAAAAATTTAAAGATTCTACCTCTTA--AGGTGTAGGAGATATAATTAAATAAATTATTTTTGATAAGATTTTTAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATA---------------------------AA--AAG------------------------------ATAACGGAATGA-GTTA---TCTATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................TTA--AGGTGTAGGAGATATAATTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.331000010
...............................................................................................................................................................................................................................................................................................................................................................TTA--AGGTGTAGGAGATATAATTAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2630.331010000
.AATTTTAA------------C-AA--------------------------------------------------------------------------------------------AAATCGAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
droGri2
CTAAAGCCC------------C----------------------------------------------------------------------------------CAACCAAACTT-------------------------------------------------------------------------------------------------------------------------------------------------------CTGAGATAAGAATCTTTTCTTATTTATTATCGGAGCACTGCGAA----------------------------------------------------------------------------------------------------ATAGATTTAGTAAGAATTGAATTTCTGAC---------------------TCAGGCCTGGAGGAGTTATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------TAAGGAACGAT-AG---ACCTTTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TGGCCGA--------TTT--------------TTGAAAT------------TC-ATG----------------------------------------------------------TATCAGTTTATCCATCAGCAAATTGACT--------------TTCAGTTGGCATTAAAACCTCA------AAAAG--TAAAAT------------------------------------------------------TTTCATCTTTTCTGATAAAA-----------------------------------------------------------------------------------------------TCAC------------------------------------------GATTTAGTAAAAATTATGTTT-----------------------------------------------------------------------------------------------------------------------TTTTA---------------CATAGAAAATCGCT----------------------------AAAATCTCAAATATTCTCACCT---------------------------------AACCCCAACTTTGTGAACCTG-------------------------------TAATAGTG----ACA-----------------------------------------------------------------------------------------------------------------------------------------AT-TT-TTGA---CCGATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................TCCATCAGCAAATTGACT--------------TTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.35707000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTGAACCTG-------------------------------TAATAGTG----..............................................................................................................................................................21200.10200002
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTCAAATATTCTCACCT---------------------------------AAC...........................................................................................................................................................................................................................24200.05101000
................................................................................................................................ATCAGCAAATTGACT--------------TTCAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
dp5
CAACTGTCC-----------CA-GA------------------A----------------------------------------------------------------------------------TCGCGAGGATCCGGACT--------------GTCGATCGGCATCAAAATCTCGGCTTCGAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------GAGGCCGATTTTT-----------TGAAAATTTA------------------------------------------------------------------------------------------------------------------------------------------------------------ATGATG---------------TAA---------------CCATCATGTTGGGTGCAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................TCGAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------GAGGCCGATTTTT-----------TG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
..............................................................................................................................................T--------------GTCGATCGGCATCAAAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
droPer2
TTACTTCAG------------T--A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCGAGCAGTGCAACCAGGGGACATGGAGAG-------------------------------------------------------------------------------------------------------------------TAGTTGCT----ACATTGCTACATTAAAACGCT-------TCCT---GCTTGTAGCTCGTAATGC--A---CATGTTGAAAGTGTTGAACTATGGAGTTACAT-----------------------------------------------------G-CCGG---AACATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGAACTATGGAGTTACAT-----------------------------------------------------G-CCGG---.....26200.459090000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAGTGTTGAACTATGGAGTTACAT-----------------------------------------------------..............27200.408071000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAACGCT-------TCCT---GCTTGTAGCTCG...............................................................................................................25200.357070000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACCAGGGGACATGGAGAG-------------------------------------------------------------------------------------------------------------------T.........................................................................................................................................................................23200.306060000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTATGGAGTTACAT-----------------------------------------------------G-CCGG---AACAT27200.255050000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGAGCAGTGCAACCAGG.........................................................................................................................................................................................................................................................................................................19200.204040000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAGTGTTGAACTATGGAGTTACAA-----------------------------------------------------..............27200.153300000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTATGGAGTTACAT-----------------------------------------------------G-CC..........21200.102020000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGCAACCAGGGGACATGG.................................................................................................................................................................................................................................................................................................22200.102000002
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTATGGAGTTACAT-----------------------------------------------------G-CCGG---AACA.27200.051001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAAAACGCT-------TCCT---GCTTGTAGC..................................................................................................................25200.051010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAACTATGGAGTTACAT-----------------------------------------------------G-CCG.........24200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTATGGAGTTACAT-----------------------------------------------------G-C...........20200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAACTATGGAGTTACAT-----------------------------------------------------G-CCGG---AACAT29200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACCAGGGGACATGGAGAA-------------------------------------------------------------------------------------------------------------------A.........................................................................................................................................................................23200.051010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGCAACCAGGGGACATGGAGA..............................................................................................................................................................................................................................................................................................25200.051010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGAACTATGGAGTTACA....................................................................20200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTATGGAGTTACAT-----------------------------------------------------G-CCGG---AA...25200.051100000
droAna3
TTTTTTACC------------ACTT---T---T----------ACTGGCAATA-AT-G-----------------GGCTGATTTTTATGTCAAAATGGTACCTCCGACTTTACAA------------------------------------------------CCGCGCCAAAA------------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAA--------------------------AATCGCATATTTTTCAA---------------TATTGCTT--CGTTCATC-----------------------------TGCACAC----------------------------------------------------------------GAAACTAATATTTT--AAATAAATCATTT---------------CAAT------------------------------TTTTTTTATTTCCAATAACACTGTAAG---GCCA------GAT------------TTTACGCACT--------------------------------G-CA--------A-GA---TAACAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACACTGTAAG---GCCA------GAT------------TTTACG..............................................................2590.333210000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAG---GCCA------GAT------------TTTACGCAC...........................................................2290.222020000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAG---GCCA------GAT------------TTTACGCAC...........................................................2190.111100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAAG---GCCA------GAT------------TTTACGC.............................................................2190.111010000
............................................................................................AAATGGTACCTCCGACTTTACAA------------------------------------------------CC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102110000
.................................................................................................GTACCTCCGACTTTACAA------------------------------------------------CCGCGCCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.102200000
......................................................................................................TCCGACTTTACAA------------------------------------------------CCGCGCCAAAA------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102200000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACACTGTAAG---GCCA------GAT------------TTTAC...............................................................24100.101001000
................................................................................................GGTACCTCCGACTTTACAA------------------------------------------------CCGCGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102000002
.................................................................................................GTACCTCCGACTTTACAA------------------------------------------------CCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACACTGTAAG---GCCA------GA.................................................................................19200.051100000
..................................................................................................TACCTCCGACTTTACAA------------------------------------------------CCGCGCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
............................................................................................................TTTACAA------------------------------------------------CCGCGCCAAAA------------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T............................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
...................................................................................................ACCTCCGACTTTACAA------------------------------------------------CCGCGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000001
...................................................................................................ACCTCCGACTTTACAA------------------------------------------------CCGCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
...........................................................................................AAAATGGTACCTCCGACTTTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
..................................................................................................TACCTCCGACTTTACAA------------------------------------------------CCGCGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
...............................................................................................TGGTACCTCCGACTTTACAA------------------------------------------------CCGCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
......................................................................................................TCCGACTTTACAA------------------------------------------------CCGCGCCAAAA------------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
droBip1
AAAATAG--------TGT-TCAATG--C----TTGAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATTTACATTCAACTTTCGGAAAATTTTTAAGGGTCCAGAGCCTTAA-TTACTGG---------------CGAGAGATTCAAAAATTTTGTGAACTATTTAGTAAA---------------ACG---------------CCATGAAGTTCGGTTCAAA-----------------------TAAATCCTAAAACATTC-----------------------------------------------------------------------------------------------------------------------------------TTTC---AATCTTACTTTATAATAA--T---C-A------------------------------------------------------------------------------AT-CG-TTTA---AACATSizeHit CountTotal NormTotal
No Reads
droKik1
CTCCGCGCG------------G-AGAT-ATGT----CGTTTATAGCT----------CGGCGGA-----------------G---------------------------------------TTATGTCG------------CTTTAAAGTGGCATATCTCC----GTGACGA------AA------AATATACATAATTTAGCTCAAAAAGAGATTAAAAAAATGTATTTGGGGCATTCCACAGAAAAAAAACTTAAACTT-----CTC-TACAAAAAATTTTTTTTTTTCAACATAGTAACAT----------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGA----AAA-------------------GGTCCA----ATTAAATTTAAAG--------------------------GAT------------TTTG------C---------------------------------CCATACAT--A-TA---TCGATTTSizeHit CountTotal NormTotal
No Reads
droFic1
GAAACTAAA------------A-AATT-TTGAT----AA----ATCGCGAGCGAA--A-----------------TGTTTGCTGGTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATAATATTTTATTTTATAAATTCTTCAAAA---------------------TCGGATAGTTTTTGTAATCGGAAAGTTTTGTATTGTTCCGATTT---------------------------------AAATTG------------------------------------------------------------------------------------AATGTGAATAGCATTGACTGCTAA---------------------------------------------------TG------------------------------CAAAGTGCCTTT-ACTGAGCTTAGTSizeHit CountTotal NormTotal
No Reads
droEle1
TCTTTATCG------------A-TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTCGTTAGTGCGAG---------------T-------------------------------------------------------------------------------------------------------------------TAATAATT----CAAAGTC-------------------ATCTCC---ATTGTTGTCTGCTAATGA------------------------------------------------TG------------------------------GTAAGCGGTTAT-ATTG---TATTTSizeHit CountTotal NormTotal
No Reads
droRho1
ATTGTGAAC------------GATT---T---C-GAAAT------------TA-AT-------------------GTTTTACTTTTAT---------------------------AAAAATTGGACG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTATATC--ATATAGCAGCCA------------------------------------------------------------------------------------------------------------------------------AAAGGAACGATCGAAAATTGAGCTGCATTGCT------TTCAAGCATCCAAAT--------TGA-------------------AAATAGAGTATTACATTTTT----GTAACAGCTTCAAGG---------------------GTATATAAGTTTCGGCTTGCGTAAGTCTGCTACCTTTCCTGTTT---------------------TTATATTAATAT---------------------TCA------AGTATACATAAAAAGGATTT--------------------------------------------------------------------------------------------------------------------------------------------------------CAATTTT-ATTT---ATTGTSizeHit CountTotal NormTotal
No Reads
droBia1
TTCGGAA--------TTT--------------TCAAACTTTTCACTTGCAA---------GGGATTTCCTTTGAATTTTCACTTGTAA---------------------------AAAAATGGATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATTATCTATATGGAGCATCACTTGTTC-------------------------------------------------------------------TTCACTC-----------------------------------------------------------------------------------------------------------------------------GCA-------TCTG---TCATGTCACTCAATATTC--A---CCAGGTGATTCAATA--------GTTAAATTT------------TTTTTAACTAAAGGGAAGAAGAGATAAGAG-----AG----A-TA---AAATAATSizeHit CountTotal NormTotal
No Reads
droTak1
GATTGTGGG------------A-AAAT-CTTTT----AC----ACTGATAACAAA--A-----------------A--------------------------------------------------------------AGTGG--------------ATCAAATGATAACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATGGTGAAATTCCGTATCTACCGAATCACTTGTTAAAAAAATAACTTTT-----TTTTCGA---------------------GAATATCGTGTTTT--TAATAAAGGTATTTT--------AAAA----A-C-------------------TTTTTT---CTTTTACTCAGAAAATGT------AAG--------------------------------------C---------------------------------CGGCATTTCAC-TC---GGTTACTSizeHit CountTotal NormTotal
No Reads
droEug1
TATGAAAAT------------A-AAAT-GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAGAGCTGGAATTCTATATTTATATGTTTAAAAAAATATTATAAAATGGAGGAGCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACAGAACA--------------------------------A-CG--AAACTATAATTA---TACTCSizeHit CountTotal NormTotal
No Reads
dm3
AACTAAA--------TAACTTAAAG--T----TTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAATTTAATGCTTTCTTTTTCGTGAAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAATT-------------------AACAAA--------------------------------------------------------------------A---------------------------------TTGAAATTTAC-AA---AACGGCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................TTAATGCTTTCTTTTTCGTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CACAACTGC------------A-AACT-GCAT----TTTTATCATCT----------TGAGGCA--------------------------------------------------------------------------------------------------------CTGACACCACG------AAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAAGTGA------------------------------------------------------------------------------------CGT-GGATTGGTTAGATTTTAGAATTATTTATATTG---------------GTA---------------CCATCTGGTT--------------------------------------AATAAAC-----------------------------------------------------------------------------------------------------------------------------CCAATTTTAACGTG----------------------------------------------------------------------------------------------------A-CAAGAACGTTC-AC-----TGTTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
TCAAAAAAC------------T--A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------------------------------------------------------------------------------------------------------GTTAA--AACTAGACTGTTA---------------AAATAT-------------------TATA------AT-ATGCTATGCAAAGG--T---CAA--------------A-------------TGAGCATACA--------------------------------GCCA-----------A---AAGTATASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GACATACGA------------A-AA-T-T----TAAAAC------------TC-TTA----------------------------------------------------------AAAGAACGCAATCG------------CTTTCGGTTA-----TCTCGATCGCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTATTCGAAAACAAACTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG----------------------------------------------------------------------------------------------TAAT--AGGCGAACCCTTT------------------------------------------TCGT---TTTTTCCGTTTTTAATGC--C---TGTAGAGCAA------AA-------------TCAG----------------------------------------CTAGGC----G-CG---ACATGTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCCGTTTTTAATGC--C---TGTAGAGC...........................................................................................2611.00101000000000
...............................................................................................................................................TTCGGTTA-----TCTCGATCGCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGCAA------AA-------------TCAG----------------------------------------CTAGGC----G-CG---ACT....2611.00100000100000
...............................................................................................................................................TTCGGTTA-----TCTCGATCGCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..............................................................................................................................TCG------------CTTTCGGTTA-----TCTCGATCGCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------------TCGT---TTTTTCCGTTTTTAATGC--C---TG.................................................................................................2620.50101000000000
droEre2
AAAGTAG--------TTCTCCAAAA--C----TAGAATG------------TC-ATA----------------------------------------------------------TAGCGTTGAATTCGTAACAAAATTTCCT--------------ATCGACCTGTATTCA-------------AAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAATTCT-AA---TTTTTTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 10:49 PM