ID:

dvi_8680

 Coordinate:

scaffold_12928:2778957-2779107 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.8 -15.6 -15.5

Flybase annnotation

exon [dvir_GLEANR_17342:2]; CDS [Dvir\GJ16837-cds]; intron [Dvir\GJ16837-in]

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+
mature
  1. scaffold_12822:1930289-1930310 +
  2. scaffold_12875:4720253-4720274 +
  3. scaffold_12875:6260110-6260131 +
  4. scaffold_12928:1413974-1413995 +
  5. dvi_8680  scaffold_12928:2779009-2779030 +
  6. scaffold_12928:3743148-3743169 +
  7. scaffold_12928:5101965-5101986 +
  8. scaffold_12928:5294997-5295018 +
  9. scaffold_12928:5473864-5473885 +
  10. scaffold_12963:16532309-16532330 +
  11. scaffold_12970:1735503-1735524 +
  12. scaffold_12970:1920871-1920892 +
  13. scaffold_12970:10639183-10639204 +
  14. scaffold_13049:4983855-4983876 +
  15. scaffold_13049:6327968-6327989 +
  16. scaffold_13049:7994263-7994284 +
  17. dvi_20158  scaffold_13049:16368133-16368154 +
  18. scaffold_13049:18371668-18371689 +
  19. scaffold_13049:22790387-22790408 +
  20. scaffold_13324:2794483-2794504 +
  21. scaffold_12758:563977-563998 +
  22. scaffold_12822:2052192-2052213 +
  23. scaffold_12822:3062480-3062501 +
  24. scaffold_12875:3802422-3802443 +
  25. scaffold_12875:5552750-5552771 +
  26. scaffold_12875:17913998-17914019 +
  27. scaffold_12928:865208-865229 +
  28. scaffold_12928:2558726-2558747 +
  29. scaffold_12929:27652-27673 +
  30. scaffold_12970:1638827-1638848 +
  31. scaffold_13042:1233140-1233161 +
  32. scaffold_13049:1871472-1871493 +
  33. scaffold_13049:2357352-2357373 +
  34. scaffold_13049:3881206-3881227 +
  35. scaffold_13049:5396107-5396128 +
  36. scaffold_13049:7008916-7008937 +
  37. scaffold_13049:7927337-7927358 +
  38. scaffold_13049:8676652-8676673 +
  39. scaffold_13049:11634285-11634306 +
  40. scaffold_13049:16696793-16696814 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGATGTGACCTGCCGCCGCAGCAGCAGCAGCAGCAGCAGCAGTTGCAGTTGTGTAAGCGAATACTTTATGGCAGCAGCAGCTGCTGCTCACACACACACACACACACACACACACACTCACACAATTGTATTAATCACACACACACACACACATTTAAAGCAAAAACTGTTACGAAATCAAAAGCAAAAATATAAAAAAAGAGCAACTGCTGTGACGAGGACGAGGACGAGGACGAGAACGTGGACGTGGA
**************************************************((((.(((...........((((((....))))))))).))))................................((((.((((....................)))).))))......................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060668
160x9_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 V116
male body		 M047
female body
 SRR060684
140x9_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 V053
head
 SRR060661
160x9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060679
140x9_testes_total
...................................................................................................................................................................AAACTGTTACTAAATCCAAAGC.................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GAAACTGTTACTAAATCCAAAGCA................................................................. 24 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................AACTGTTACTAAATCCAAAGCA................................................................. 22 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.................GCAGCAGCAGCAGCAGCAGCAGCA.................................................................................................................................................................................................................. 24 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0
...........................CAACAGCAGCAGCATTTGCAGTT......................................................................................................................................................................................................... 23 2 19 0.05 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................TGTGACAGGGACGAGGA........................ 17 2 19 0.05 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................CGAGGACGAGGACAAGGACGA............... 21 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................GACGAGGACGAGGACGAGGACG................ 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
....................GCAGCAGCAGCAGCAGCAGCAGTT............................................................................................................................................................................................................... 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................ACGAGGACGGGGACGAGGACG................ 21 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
...................................................................................CTGCTCACACACACACACACC................................................................................................................................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.....................CAGCAGCAGCAGCAGCAGCAGT................................................................................................................................................................................................................ 22 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................CACACACACACACACTCACACA............................................................................................................................... 22 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
......................AGCAGCAGCAGCAGCAGCAGTT............................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................CGAGGACGAGGACGAGGA.................. 18 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

ACTACACTGGACGGCGGCGTCGTCGTCGTCGTCGTCGTCGTCAACGTCAACACATTCGCTTATGAAATACCGTCGTCGTCGACGACGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGTTAACATAATTAGTGTGTGTGTGTGTGTGTAAATTTCGTTTTTGACAATGCTTTAGTTTTCGTTTTTATATTTTTTTCTCGTTGACGACACTGCTCCTGCTCCTGCTCCTGCTCTTGCACCTGCACCT
**************************************************((((.(((...........((((((....))))))))).))))................................((((.((((....................)))).))))......................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR060687
9_0-2h_embryos_total
 V116
male body		 M028
head
 M061
embryo
 GSM1528803
follicle cells
............................................................................................................................................................................................................TCGGCGACACTGCTCGTGCTC.......................... 21 3 2 0.50 1 1 0 0 0 0 0
.............................................................................................................................................................................................TATATTTTGATCTCCTTGACG......................................... 21 3 3 0.33 1 0 1 0 0 0 0
.............................................................................................................................................................................................................CGGCGACATTGCTCCTGCTC.......................... 20 3 5 0.20 1 1 0 0 0 0 0
................................................................................................................GTGTCAGTGTGGTAACAT......................................................................................................................... 18 2 6 0.17 1 0 0 1 0 0 0
...............................CCGTCGTCGTCAACCTCAAGAC...................................................................................................................................................................................................... 22 3 7 0.14 1 0 0 0 1 0 0
.............................................................................................................................................................................................................CGACGACAGTGCGCCTGCTC.......................... 20 3 9 0.11 1 1 0 0 0 0 0
..........................CGTCGTCGTCGTCGACAACGTCAA......................................................................................................................................................................................................... 24 1 11 0.09 1 0 0 0 0 1 0
.....................................................................................................................................................................................................................CTGCTCCTGCTCCTGCTCCTG................. 21 0 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:2778907-2779157 + dvi_8680 TGATGTGA---------C-----CTGC--CG------CCGCAGCAGCAG------CA-GCAGCAGCAGCAGTTGCAG---------TTGT-----------GTAAGCGAA-----TACTTTATG-G-----------CAGCAGCAGCTGCT------------------GCT-----------------------------------------------------------------------------------------CACACACA-CACACACACACA--------------CACACAC------------------ACTCACACAAT------------------------------------TGTATTAA------TCACACACACACACACACA------T-------TT--AA--------------------------------------------------------------------AGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACTGTTACGAAATCAAAAG--------C--AA----------------------------AAA-----------------------------------------------------TATAAAAAAAG---------------A---------GCAACTGCTGTGACG-------------------------------------------------------AGGACGAGGACGAGGACGAGAACGT------GGACGT----------GGA
droMoj3 scaffold_6473:14568805-14569009 + TGATTTGA---------C-----CTGC--AG------GAGC------AGCAGTTGA---------------------------------------------ATAAACGAC-----TGCTTTATG-GCAAC------G--GCAGCAGCT---------------------GCT------------------------------------------------------------------------------A--CA------CA--CAC-ACACACACACAGA--------------TA-------------------------------------------------------------------------------------------------------TGTATT---------T--TT--------------------------------------------------------------------AGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACTGTTACGAAATCAACAAAAA---A--ATAATAT------TTATATATAT-----------------------------------------------------------------------------------------------------------------------------------------ATATCTCTGTGTGTGTGTGT------------GTGTGTCTGTGTCCAGGAGGTGGTCTGAAAAGGGGAAAA----------AAG
droGri2 scaffold_15203:1678244-1678475 - TGATCTGA---------C-----ATGC--CA------CAGCAGCAGCAG-------------CAGCAGCAGTTGTAG---------TTGA-----------ACAAGTGAC-----AGCTTTATG-G-----------AAGTAGCAGCTGCC------------------GCA-----------------------------------------------------------------------------CTAGCACATA------AAC-----ACACAAACA--------------CACTCAT------------------ACTATT-----------------------------------------------AA------TC----------------G------TCA-------------------------------------CA---------------------------------------TGGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACTGTTACGAAATAAAAAAAAA---A--AACAAAA------TAATAAAAAT----------------------------------AAG----------------------------GAGAGAAAAAG---------------A---------GCAACTGCTGTGACGAGGAC------------------------------------------------------------C------------GA------GGACAATGACTGTGGTGGG
droWil2 scf2_1100000004768:764510-764766 - TGCCGACA---------A-----CAGC--AG------CAGC------AGCAGCAGCA-ACAGCAACAGCA---ACAG------CAGCA-------------------------ATAACATCATA-G---CCTGCGC-TCCTTTTGGTGGCCAG----------------------------------------------------------------------------------------------------CA------CACACACA-CACACACACACA---------------------------------------------------AA----CTGAGACAC-------ACATACAGTGAGGAGAGATAATAACAATC----------------G------ACA-------------------------------------CA---------------------------------------C-------------------------------AGTCGGGCCAAGAACCAAGCAGTAAGACCGACCACAAAGCAGACCAACCAACAGCAACAGCAACAGCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------GAAACAGCCGAGA-------------------------------------------------------------------------CCAGCGCAA------AGACCA------G---GGC
dp5 XL_group1a:2070257-2070424 - GCAGC----------------------AG--CAGCAGCAG------CAG----------CAGCAGCAGCAGTAGCAG------TAGCACTC-------------C-----CCAGTAACCGTAATCGTAGC------C--TTAACAGTAACT------------------G------------------------------------------------------------------TTAACACCCATTTCCGCCAC------TCAC-----ACACA----------------------------------------------CACACGCGAG------------------------------------TGCG-----------CACACATACACACAAACA------A-------AA--CA--------------------------------------------------------------------GGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACTGTTCCCCAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA
droPer2 scaffold_22:852790-853023 + AGCAGC---------------------AT--CAG---GG------GCAG------CA-GCAACAACAGGA---AGA--------------------------CAT-------------------------------------------------------------------AACA---CACATCCTTTGG--------------------------------------------------------------CA------CACACACA-CACACACACACA---------------------------------------------------CA----CAGACACACCCCG-AAGCACACTCCG-----------------------------------------------------------------------------------------AC--------------------------------------------------------------------------------------------------------------------------------------AAATCTAATAATAAATCCAAG---------------------------------------------------------------------ACACTTAACGCCTT----GGCCGCAG------------------------------------------------------------------CAACCATGACCCACAAACTAGCTGAGGGATTGCCCGAATG--------------------------------------------------TGCTGTGTGC----------------------------------------T------------GGAAGCGGAAGGAGTTGGAGTGTTCGA------GGACGT----------GGA
droAna3 scaffold_12903:139958-140172 + TGCAGT---------------------TG--CAA---GG------ATAA------CG-GCAGGACATGCA------G------CCAG---CAACAAGTGAGACAACCGCA-----TAATCCACA-G-----------TAACCGCAAAGGCC------------------ACG-----------------------------------------------------------------------------CCCACACACA-----------CACACACACACA--------------CCCGCAC------------------ACCCACACACA------------------------------------AATAAAAA------CCACTC-------------------TCACACACACGAGAAGCCGCATTAATAAATTTTCATGGTAAAAAAAAAAAGTGGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-----------------------------------------------------------------ATTG------------------------------------------------------AAAAA------GCGATC----------TCT
droBip1 scf7180000396425:706815-707038 + GCAGC----------------------GG--CGGCG---------GCGG------TG-GCGGTGGCGGCG---GCGG------TGAC---CCACGAAAAAGGCAAGCACT-----GGAAGAGGA-A-----------GAGCCTGAG-------------------------------------ACCGTTCA----------------------------------------------------------CTCATA----------CAC-ACACATATACACA--------------TA-------------------------------------------------------------------------------------------------------TACAGT---------G--TT--------------------------------------------------------------------ACTG--------------------------------------------------------------------------TTACTGGTAATGGCTACTGCCAC-----------------------------------------TGGCA-------------------------------------------------------------CACGCAAAA------------------------AAT--AA----------------------------AAATAATAA----------------------------------------ATAGGAATATAGAAGTAC---------------G---------AGTACGCCT-------------------------------------------------------------------------GCGACTGTGACTG------CGACTG------C---GAC
droKik1 scf7180000302570:78819-79054 + TGCAACAA---------A-----CTGC--AG------CACCAGCAGCAG------CA-GCAGCAACTGAA---GTGG------CGGT---CCA------ATGCATGCGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAATTAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGAAGTTTTGCACGCTAC-----------------------ATTTAAAGCAG-------CAGCAAACGGCAAATGCAACAGCAAC-----------------------------------------AAGAAGA--------------------------------------------AGGAAAAGCCTG----------ACCTGCAACAATGTGAAAATGCA---A--ACTGCGA------TCATAAAAATTGTGG------------------------------------------------------------CCCAA-----CTGCAACCGCTGCCAA----------------------------------------------------------------------------------------------AAC-GGGACGT------GAACGT----------GGA
droFic1 scf7180000454073:1081245-1081439 - TTACGTTGCCGGACCGCCGATGACGAC--AACAGCAGCAG------CAGCAGCAGCA-GCAGCA-CAGCA-------------------------------------------------------GCGGC------A--GCGACAGCAGCA------------------G-----------------------------------------------------------------------------------CA------CACACACA-CTCGCACACACACATCGACAACCACACTCACTCACACACACACTTTCGCACAC---------TCACACAC---CACACAGAATAGCAA-----------------------------------------------------------------------------------------AAAAAAAAGAACGCAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTG------------------------------------------------------AAGA------------------------AG
droEle1 scf7180000491347:8096-8303 + TGTTTTAA-----TT--A-----CTGA--AG------CAACAGCAGCAG------CA-GCAGCAACAGAA---ACAG------CCACA----------------------TCTCTGGCATTGCA-C-----------AAGCCGCAGCC---------------------GAA-ACAAAACGGAGCCAGCCACACAGACC------------GAGCAAAAGAAATTGAAAAAATGTAATAAAATAAATTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTAAC-------------------------------------AAAACAAAAATTAAAAAGCAGAAAT--------------------------------------------------------------------CAA---------------------------------------------------------------------------------------AACAAAACAAAACAACGG------CGCAGC----------GAC
droRho1 scf7180000779479:322601-322783 - AGAACAGC---------CAGAAGTTGC--AG------TTGCAGCAGCAG------CA-GCAGCAGCAGCAGCTCCAG---------TTGCC-------------A-----CTAGCAACATCAAGAGCGGC------A--GCAACAGCAGCA------------------G-----------------------------------------------------------------------------------CA------T--------------CAATCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCGGCAACAATAGCAGTCAGCAGGACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGG---------------A---------GGAACTG--------------------------------------------GACGA------------GGATGAGGAGGACGAGGAGGAGGACGA------GGACGA----------GGA
droBia1 scf7180000302126:3412145-3412376 - AGCAGCAA---------C-----TTGC--GG-CC---GAGCAGCAGCAG------CGAGCGGCGGCAGCGGCGGCCG---------TAGT-----------GGCA-------------------------------------GCGGCGGTCAGTGCGCTGCACAACGGC---AACA---AGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCACTACAACAACAACAA----CAAC------------------AATAACA-------------------------ATGGCAAC------AGC----------------------------------AAGTCGAGGGATCGCGACGATCACCTGCAGGCACAG-----CAGCAGTCGC------AGCAGTCGCAGCA-----------------------------------------------------------------GCCGCAGGACGACGAGGACGAGGACGA------GGACTA----------CGA
droTak1 scf7180000415876:134091-134317 + CCGACC----------------------G--AGGCAGCAGC------AGCAGCAG----------CAACAACAACAG---CAGCAACCAG-----------CGAAG----TGGCTGGCAAAGCA-A-----------ATGGTGAAATC-------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAAAAACATTGGCTGCCAGG--GAAGAACAAGAAAATGGCGCCAATTTGGAGCAAGAAACCAAAAA-----------------------------------------------------------TAC------CAATAAGCCA-----------------------------------------------------------------------------------------------------------------------------------------ATAATACCGAGTGTAAATGAAGAGGAGGACGAGGAGGAGGAGGAGGAGGACGACGACGA------GGAGGA----------GGA
droEug1 scf7180000409032:624221-624356 - GCAGC----------------------AG--CAGCA---------GCAG-------------CAGCAGCAGCCGCCA---------TAGT-----------AC-A-----GAAGCAACATCACA-G------------C---------------------------------AACA---TGCAACCTGCAA-----------------------------------------------------------CACCAGCAGCATACTAAC-----ACACACTCA---------------------------------------------------CA----CCGACACAC-----AAGCATACACTGAACTGAACTAA------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------TA
dm3 chrX:18080702-18080897 + CAAACACA---------A------TGG--GG------CAGC------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACACG-TGCACACGTACA--------------CACACAC------------AC----AC--ACACACA-CA--------------------------------------------------CACACA----------CACACA---------T--GC--------------------------------------------------------------------ACATATACTGGAAGAGTCAAGTCTGACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTAACGACTTACTTAGCCAAAG------------------------AAC--CA----------------------------AAA-----------------------------------------------------AAAGAAGAAGG---------------G---------GCAGCAACGGTTCCAAGAACCCAAAGAAAAATGCTG------------------------------------------------------AAAAG------GTACGA----------GGA
droSim2 2l:19896177-19896323 - CTGC-------------------------AG------CGGCGGCAGCAG------CA-GCAGCGGCGGCG---GCGG------CTGTGGAC-------------G-----TCGATGGTTTTGTG-G-----------ACGACGTTGTGGCT------------------TCT-----------------------------------------------------------------------------CCGCTACCCG------G-----ACGCACTCACA--------------GGCTCAC------------------GCTCACGCACA-------------------------------------------------------------CGCAGACGCACACTTGGCACACTT--AA--------------------------------------------------------------------AG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA
droSec2 scaffold_8:204327-204515 - TGCATT----------------------A--TTGCCGCTGC------TGCTGCTG----------CTTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA--CAC---------------ATTAACATTAATCGTCATGCAAACGCACACATACACACAC---------ACACATAG---CACACACGGCACTCA-----------------------------------------------------------------------------------------CACAGCGAGAAAGTTACGAAGCCGAGGGACCAGCAAACGAGC-------------------------------AAA-----------------------ACAAACTACGAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGACGAACGCGACAACGACAACAC-------AGCGA----------CAA
droYak3 X:19081126-19081375 - CCGC-------------------------CG------CCGCAGCAGCAG------CA-GCAGCAGCGGCA---GCAG------CGCTCAGC-------------A-----TCAGCAACAACA-----------------------------------------------GC-AACAATTCGGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATCAGCGGGCCAGCAGCCGCAC-------------------------------AGC-----------------------ACTAGCAGCAGCA-------GCA-------ACAAC---------AACAATAACAATGGGGCTAAC---------------------------------------------------------------------ACTGTTAAC------------------AGCAACA-------------------------ACAACAAC-------------------AGCAACAA----------------------------------------CTATGGGCACAG-----CAGCAGCAGCTCGCAGA---------GCAG-------------------------------------------CATGGACGA------------AGAGGAGGACGACGAGGAGGAGGACGA------AGAGGA----------GGA
droEre2 scaffold_4820:9126974-9127244 + GCGGC----------------------AG--CAGCAGTAG------CAGCAGCAG----------CAGCA---GCAAGTG---TGA------------------GCCGAA-----TATTCAAAA-A-----------AGGCAGCAAC--------------------------------CGGCGCCAGCCGTCCGTGCCCAAATGGGGATCAAGTGGAGG----------------TGGACGCCAGAACCCCACAC------A--CT---CACACA----------------------------------------------CACCCACAAG------------------------------------GGAGG----------------------------------------------------------------------------------------------------GGGCCAACCGATGCCC-------------------------------TGT-----------------------CCT-----------------------------------------------------------------------------------------------------------------------------------------------------GGCCAAAGCAGCCATCAAAGCACAAG-TCAATGATGCCATTA------TAATAGAGAA----------------------------------------------------------------AC-----------------------------GACGGAGGA-----------------------------------------------------------------GCAGCGCGGAAACGGCGACGAGGACGA------GGACTT----------GGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGATGTGA---------C-----CTGC--CG------CCGCAGCAGCAG------CA-GCAGCAGCAGCAGTTGCAG---------TTGT-----------GTAAGCGAA-----TACTTTATG-G-----------CAGCAGCAGCTGCT------------------GCT-----------------------------------------------------------------------------------------CACACACA-CACACACACACA--------------CACACAC------------------ACTCACACAAT------------------------------------TGTATTAA------TCACACACACACACACACA------T-------TT--AA--------------------------------------------------------------------AGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACTGTTACGAAATCAAAAG--------C--AA----------------------------AAA-----------------------------------------------------TATAAAAAAAG---------------A---------GCAACTGCTGTGACG-------------------------------------------------------AGGACGAGGACGAGGACGAGAACGT------GGACGT----------GGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................GCAGCAGCAG------CA-GCAGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102000000000000000000000000000000000020000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACG-------------------------------------------------------AGGACGAGGACGAGGACG................................22200.051000000000000000000010000000000000000000000000000000000000000000
..........................................GCAGCAG------CA-GCAGCAGCAGCAGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................CT------------------GCT-----------------------------------------------------------------------------------------CACACACA-CACACACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
...........................................CAGCAG------CA-GCAGCAGCAGCAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................CACACA--------------CACACAC------------------ACTCACACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
............................................AGCAG------CA-GCAGCAGCAGCAGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-------------------------------------------------------AGGACGAGGACGAGGA..................................18200.051000000000001000000000000000000000000000000000000000000000000000
droMoj3
TGATTTGA---------C-----CTGC--AG------GAGC------AGCAGTTGA---------------------------------------------ATAAACGAC-----TGCTTTATG-GCAAC------G--GCAGCAGCT---------------------GCT------------------------------------------------------------------------------A--CA------CA--CAC-ACACACACACAGA--------------TA-------------------------------------------------------------------------------------------------------TGTATT---------T--TT--------------------------------------------------------------------AGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACTGTTACGAAATCAACAAAAA---A--ATAATAT------TTATATATAT-----------------------------------------------------------------------------------------------------------------------------------------ATATCTCTGTGTGTGTGTGT------------GTGTGTCTGTGTCCAGGAGGTGGTCTGAAAAGGGGAAAA----------AAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGTGTGTGTGTGT------------GT..................................................18200.051000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGT------------GTGTGTCTGTG.........................................20200.051100000
droGri2
TGATCTGA---------C-----ATGC--CA------CAGCAGCAGCAG-------------CAGCAGCAGTTGTAG---------TTGA-----------ACAAGTGAC-----AGCTTTATG-G-----------AAGTAGCAGCTGCC------------------GCA-----------------------------------------------------------------------------CTAGCACATA------AAC-----ACACAAACA--------------CACTCAT------------------ACTATT-----------------------------------------------AA------TC----------------G------TCA-------------------------------------CA---------------------------------------TGGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACTGTTACGAAATAAAAAAAAA---A--AACAAAA------TAATAAAAAT----------------------------------AAG----------------------------GAGAGAAAAAG---------------A---------GCAACTGCTGTGACGAGGAC------------------------------------------------------------C------------GA------GGACAATGACTGTGGTGGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TGCCGACA---------A-----CAGC--AG------CAGC------AGCAGCAGCA-ACAGCAACAGCA---ACAG------CAGCA-------------------------ATAACATCATA-G---CCTGCGC-TCCTTTTGGTGGCCAG----------------------------------------------------------------------------------------------------CA------CACACACA-CACACACACACA---------------------------------------------------AA----CTGAGACAC-------ACATACAGTGAGGAGAGATAATAACAATC----------------G------ACA-------------------------------------CA---------------------------------------C-------------------------------AGTCGGGCCAAGAACCAAGCAGTAAGACCGACCACAAAGCAGACCAACCAACAGCAACAGCAACAGCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------GAAACAGCCGAGA-------------------------------------------------------------------------CCAGCGCAA------AGACCA------G---GGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................C------AGCAGCAGCA-ACAGCAACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05110000
....GACA---------A-----CAGC--AG------CAGC------AGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100001
dp5
GCAGC----------------------AG--CAGCAGCAG------CAG----------CAGCAGCAGCAGTAGCAG------TAGCACTC-------------C-----CCAGTAACCGTAATCGTAGC------C--TTAACAGTAACT------------------G------------------------------------------------------------------TTAACACCCATTTCCGCCAC------TCAC-----ACACA----------------------------------------------CACACGCGAG------------------------------------TGCG-----------CACACATACACACAAACA------A-------AA--CA--------------------------------------------------------------------GGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACTGTTCCCCAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................GCAGCAGCAGTAGCAG------TAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19180.0610000100000
GCAGC----------------------AG--CAGCAGCAG------CAG----------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510010000000
droPer2
AGCAGC---------------------AT--CAG---GG------GCAG------CA-GCAACAACAGGA---AGA--------------------------CAT-------------------------------------------------------------------AACA---CACATCCTTTGG--------------------------------------------------------------CA------CACACACA-CACACACACACA---------------------------------------------------CA----CAGACACACCCCG-AAGCACACTCCG-----------------------------------------------------------------------------------------AC--------------------------------------------------------------------------------------------------------------------------------------AAATCTAATAATAAATCCAAG---------------------------------------------------------------------ACACTTAACGCCTT----GGCCGCAG------------------------------------------------------------------CAACCATGACCCACAAACTAGCTGAGGGATTGCCCGAATG--------------------------------------------------TGCTGTGTGC----------------------------------------T------------GGAAGCGGAAGGAGTTGGAGTGTTCGA------GGACGT----------GGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TGCAGT---------------------TG--CAA---GG------ATAA------CG-GCAGGACATGCA------G------CCAG---CAACAAGTGAGACAACCGCA-----TAATCCACA-G-----------TAACCGCAAAGGCC------------------ACG-----------------------------------------------------------------------------CCCACACACA-----------CACACACACACA--------------CCCGCAC------------------ACCCACACACA------------------------------------AATAAAAA------CCACTC-------------------TCACACACACGAGAAGCCGCATTAATAAATTTTCATGGTAAAAAAAAAAAGTGGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-----------------------------------------------------------------ATTG------------------------------------------------------AAAAA------GCGATC----------TCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GCAGC----------------------GG--CGGCG---------GCGG------TG-GCGGTGGCGGCG---GCGG------TGAC---CCACGAAAAAGGCAAGCACT-----GGAAGAGGA-A-----------GAGCCTGAG-------------------------------------ACCGTTCA----------------------------------------------------------CTCATA----------CAC-ACACATATACACA--------------TA-------------------------------------------------------------------------------------------------------TACAGT---------G--TT--------------------------------------------------------------------ACTG--------------------------------------------------------------------------TTACTGGTAATGGCTACTGCCAC-----------------------------------------TGGCA-------------------------------------------------------------CACGCAAAA------------------------AAT--AA----------------------------AAATAATAA----------------------------------------ATAGGAATATAGAAGTAC---------------G---------AGTACGCCT-------------------------------------------------------------------------GCGACTGTGACTG------CGACTG------C---GACSizeHit CountTotal NormTotal
No Reads
droKik1
TGCAACAA---------A-----CTGC--AG------CACCAGCAGCAG------CA-GCAGCAACTGAA---GTGG------CGGT---CCA------ATGCATGCGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAATTAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGAAGTTTTGCACGCTAC-----------------------ATTTAAAGCAG-------CAGCAAACGGCAAATGCAACAGCAAC-----------------------------------------AAGAAGA--------------------------------------------AGGAAAAGCCTG----------ACCTGCAACAATGTGAAAATGCA---A--ACTGCGA------TCATAAAAATTGTGG------------------------------------------------------------CCCAA-----CTGCAACCGCTGCCAA----------------------------------------------------------------------------------------------AAC-GGGACGT------GAACGT----------GGASizeHit CountTotal NormTotal
No Reads
droFic1
TTACGTTGCCGGACCGCCGATGACGAC--AACAGCAGCAG------CAGCAGCAGCA-GCAGCA-CAGCA-------------------------------------------------------GCGGC------A--GCGACAGCAGCA------------------G-----------------------------------------------------------------------------------CA------CACACACA-CTCGCACACACACATCGACAACCACACTCACTCACACACACACTTTCGCACAC---------TCACACAC---CACACAGAATAGCAA-----------------------------------------------------------------------------------------AAAAAAAAGAACGCAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTG------------------------------------------------------AAGA------------------------AGSizeHit CountTotal NormTotal
No Reads
droEle1
TGTTTTAA-----TT--A-----CTGA--AG------CAACAGCAGCAG------CA-GCAGCAACAGAA---ACAG------CCACA----------------------TCTCTGGCATTGCA-C-----------AAGCCGCAGCC---------------------GAA-ACAAAACGGAGCCAGCCACACAGACC------------GAGCAAAAGAAATTGAAAAAATGTAATAAAATAAATTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTAAC-------------------------------------AAAACAAAAATTAAAAAGCAGAAAT--------------------------------------------------------------------CAA---------------------------------------------------------------------------------------AACAAAACAAAACAACGG------CGCAGC----------GACSizeHit CountTotal NormTotal
No Reads
droRho1
AGAACAGC---------CAGAAGTTGC--AG------TTGCAGCAGCAG------CA-GCAGCAGCAGCAGCTCCAG---------TTGCC-------------A-----CTAGCAACATCAAGAGCGGC------A--GCAACAGCAGCA------------------G-----------------------------------------------------------------------------------CA------T--------------CAATCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCGGCAACAATAGCAGTCAGCAGGACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGG---------------A---------GGAACTG--------------------------------------------GACGA------------GGATGAGGAGGACGAGGAGGAGGACGA------GGACGA----------GGASizeHit CountTotal NormTotal
No Reads
droBia1
AGCAGCAA---------C-----TTGC--GG-CC---GAGCAGCAGCAG------CGAGCGGCGGCAGCGGCGGCCG---------TAGT-----------GGCA-------------------------------------GCGGCGGTCAGTGCGCTGCACAACGGC---AACA---AGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCACTACAACAACAACAA----CAAC------------------AATAACA-------------------------ATGGCAAC------AGC----------------------------------AAGTCGAGGGATCGCGACGATCACCTGCAGGCACAG-----CAGCAGTCGC------AGCAGTCGCAGCA-----------------------------------------------------------------GCCGCAGGACGACGAGGACGAGGACGA------GGACTA----------CGASizeHit CountTotal NormTotal
No Reads
droTak1
CCGACC----------------------G--AGGCAGCAGC------AGCAGCAG----------CAACAACAACAG---CAGCAACCAG-----------CGAAG----TGGCTGGCAAAGCA-A-----------ATGGTGAAATC-------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAAAAACATTGGCTGCCAGG--GAAGAACAAGAAAATGGCGCCAATTTGGAGCAAGAAACCAAAAA-----------------------------------------------------------TAC------CAATAAGCCA-----------------------------------------------------------------------------------------------------------------------------------------ATAATACCGAGTGTAAATGAAGAGGAGGACGAGGAGGAGGAGGAGGAGGACGACGACGA------GGAGGA----------GGASizeHit CountTotal NormTotal
No Reads
droEug1
GCAGC----------------------AG--CAGCA---------GCAG-------------CAGCAGCAGCCGCCA---------TAGT-----------AC-A-----GAAGCAACATCACA-G------------C---------------------------------AACA---TGCAACCTGCAA-----------------------------------------------------------CACCAGCAGCATACTAAC-----ACACACTCA---------------------------------------------------CA----CCGACACAC-----AAGCATACACTGAACTGAACTAA------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------TASizeHit CountTotal NormTotal
No Reads
dm3
CAAACACA---------A------TGG--GG------CAGC------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACACG-TGCACACGTACA--------------CACACAC------------AC----AC--ACACACA-CA--------------------------------------------------CACACA----------CACACA---------T--GC--------------------------------------------------------------------ACATATACTGGAAGAGTCAAGTCTGACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTAACGACTTACTTAGCCAAAG------------------------AAC--CA----------------------------AAA-----------------------------------------------------AAAGAAGAAGG---------------G---------GCAGCAACGGTTCCAAGAACCCAAAGAAAAATGCTG------------------------------------------------------AAAAG------GTACGA----------GGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................G-TGCACACGTACA--------------CACACAC------------AC----AC--ACACACA-CA--------------------------------------------------CA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................35158.0058000000000000000000000000000000000000000000000000000000000273280000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACACG-TGCACACGTACA--------------CACACAC------------AC----AC--ACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3518.0080000000000000000000000000000000000000000000000000000000006020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................CACACG-TGCACACGTACA--------------CACACAC------------AC----AC--ACACAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3515.0050000000000000000000000000000000000000000000000000000000001040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TGCACACGTACA--------------CACACAC------------AC----AC--ACACACA-CA--------------------------------------------------CAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3513.0030000000000000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................CACG-TGCACACGTACA--------------CACACAC------------AC----AC--ACACACA-C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3512.0020000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GC------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACACG-TGCACACGTACA--------------CACACAC------------AC----AC--A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CAGC------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACACG-TGCACACGTACA--------------CACACAC------------AC----A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................ACACGTACA--------------CACACAC------------AC----AC--ACACACA-CA--------------------------------------------------CACACA----------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................ACG-TGCACACGTACA--------------CACACAC------------AC----AC--ACACACA-CA--------------------------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................CACACGTACA--------------CACACAC------------AC----AC--ACACACA-CA--------------------------------------------------CACAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3521.0020000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACACG-TGCACACGTACA--------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................CACGTACA--------------CACACAC------------AC----AC--ACACACA-CA--------------------------------------------------CACACA----------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................G------CAGC------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACACG-TGCACACGTACA--------------CACACAC------------AC----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................CAC------------AC----AC--ACACACA-CA--------------------------------------------------CACAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................ACACGTACA--------------CACACAC------------AC----A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.1110000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................C------------AC----AC--ACACACA-CA--------------------------------------------------CACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................C------------AC----AC--ACACACA-CA--------------------------------------------------CACACA----------CA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................TACA--------------CACACAC------------AC----AC--ACACAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................C------------AC----AC--ACACACA-CA--------------------------------------------------CACACA----------CACACA---------T--..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................AC----AC--ACACACA-CA--------------------------------------------------CACACA----------CACAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................CACAC------------AC----AC--ACACACA-CA--------------------------------------------------CACACA----------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................TACA--------------CACACAC------------AC----AC--ACACACA-CA--------------------------------------------------CAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CTGC-------------------------AG------CGGCGGCAGCAG------CA-GCAGCGGCGGCG---GCGG------CTGTGGAC-------------G-----TCGATGGTTTTGTG-G-----------ACGACGTTGTGGCT------------------TCT-----------------------------------------------------------------------------CCGCTACCCG------G-----ACGCACTCACA--------------GGCTCAC------------------GCTCACGCACA-------------------------------------------------------------CGCAGACGCACACTTGGCACACTT--AA--------------------------------------------------------------------AG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.TGC-------------------------AG------CGGCGGCAGCAG------CA-GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.75300003000000000000
.......................................GCGGCAGCAG------CA-GCAGCGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20160.06100000000001000000
droSec2
TGCATT----------------------A--TTGCCGCTGC------TGCTGCTG----------CTTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA--CAC---------------ATTAACATTAATCGTCATGCAAACGCACACATACACACAC---------ACACATAG---CACACACGGCACTCA-----------------------------------------------------------------------------------------CACAGCGAGAAAGTTACGAAGCCGAGGGACCAGCAAACGAGC-------------------------------AAA-----------------------ACAAACTACGAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGACGAACGCGACAACGACAACAC-------AGCGA----------CAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CCGC-------------------------CG------CCGCAGCAGCAG------CA-GCAGCAGCGGCA---GCAG------CGCTCAGC-------------A-----TCAGCAACAACA-----------------------------------------------GC-AACAATTCGGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATCAGCGGGCCAGCAGCCGCAC-------------------------------AGC-----------------------ACTAGCAGCAGCA-------GCA-------ACAAC---------AACAATAACAATGGGGCTAAC---------------------------------------------------------------------ACTGTTAAC------------------AGCAACA-------------------------ACAACAAC-------------------AGCAACAA----------------------------------------CTATGGGCACAG-----CAGCAGCAGCTCGCAGA---------GCAG-------------------------------------------CATGGACGA------------AGAGGAGGACGACGAGGAGGAGGACGA------AGAGGA----------GGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGACGACGAGGAGGAGGACGA------AGA................2711.00100100000000
.............................................GCAG------CA-GCAGCAGCGGCA---GCAG------CGCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCTCGCAGA---------GCAG-------------------------------------------CA.......................................................................2311.00100010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGGAGGAGGACGA------AGAGGA----------...2320.50101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGGAGGAGGACGA------AGAGGA----------...2220.50100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGAGGAGGACGA------AGAGGA----------G..2220.50100010000000
.........................................................................................GC-------------A-----TCAGCAACAACA-----------------------------------------------GC-AAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.25100100000000
........................................CAGCAGCAG------CA-GCAGCAGCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
droEre2
GCGGC----------------------AG--CAGCAGTAG------CAGCAGCAG----------CAGCA---GCAAGTG---TGA------------------GCCGAA-----TATTCAAAA-A-----------AGGCAGCAAC--------------------------------CGGCGCCAGCCGTCCGTGCCCAAATGGGGATCAAGTGGAGG----------------TGGACGCCAGAACCCCACAC------A--CT---CACACA----------------------------------------------CACCCACAAG------------------------------------GGAGG----------------------------------------------------------------------------------------------------GGGCCAACCGATGCCC-------------------------------TGT-----------------------CCT-----------------------------------------------------------------------------------------------------------------------------------------------------GGCCAAAGCAGCCATCAAAGCACAAG-TCAATGATGCCATTA------TAATAGAGAA----------------------------------------------------------------AC-----------------------------GACGGAGGA-----------------------------------------------------------------GCAGCGCGGAAACGGCGACGAGGACGA------GGACTT----------GGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...GC----------------------AG--CAGCAGTAG------CAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000010

Generated: 05/16/2015 at 09:22 PM