dvi_8629

exon [dvir_GLEANR_17107:3]; exon [dvir_GLEANR_17107:2]; CDS [Dvir\GJ16601-cds]; CDS [Dvir\GJ16601-cds]; intron [Dvir\GJ16601-in]

Name	Class	Family	Strand
(CGAG)n	Simple_repeat	Simple_repeat	+

CTAGAGGTTATGCTGGTTACCGGTCCATAAAGCGGACGAGTTGCTCCGGCCATTCAGATAATATGTATGTGTATAAGCGGAGTCTGACTGAGAGATAGAGAGAGAGCGAGCGAGCGAGCGAGCAAGAGAGACATCCGCATGCGTGGCGGATACACTTCGTCACACCCCGCTTCCGAAAATAACGG ************************************************************.....((...(((..((.......))..)))...))...............**********************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V053 head
......GTCATGCTGGTTACTGGGC................................................................................................................................................................	19	3	6	0.17	1	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12928:2336587-2336771 -	dvi_8629	GATCTCCAATACGACCAATGGCCAGGTATTTCGCCTGCTCAACGAGGCCGGTAAGTC-----------TATT-A-------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------ACAT--------------------------------------------------ACACATATTCGCCTCAGACTGACTCTCTATCTCTCTCTCGCTC-----GCTCGCTCGC------------------------TC-G----------------T------------------------TCTCTCT-----------------------------GTAGGCGTACGCACCGCCTATGTGAAGCAGTGTGGGGCGAAGGCTTTTATTGCC
droMoj3	scaffold_6473:14107528-14107702 -		GATCTCCAACACGACCAATGGCCAGGTATTTCGCCTGCTCAACGAGGCCGGTAAGTG-----------TCGCTC--------------------------------------------------------------------------------------------TCTCTC----------------------------------------------------------TCTCTCTCTCC-----CCCTCTCTCTTG--TCTCATTTTCGCT-----------------------------------------------------------------------------------------------------------------------CT-----------------ATTT---------------------TGATTTCGCC-----------------------------ATAGGCGTTCGCACTGCATATGTTAAGCAGTGCGGCGAGAAGGCGTTCATTGCC
droGri2	scaffold_15203:5030258-5030496 +		GATCTCGAATACAACCAATGGACATGTCTTTCGGCTGCTCAACGAGGCGGGTAAGGG-----------TACTCGTGATTTAAAAGTACAAAAAAAAGGAGCAAAAAGAAAAAAATTTGACTAGAAAAAAATTGTAGATAATAATCGTAATAGTTAATTTACAGTTATCA-------------------------------------------------------------------------A---------------------------------------------------------TCTC-------------------------------------------------TG------------------------------TCTCTCTCATC-TT----------------------------------------GTGTTGT-----------------------------GTAGGTGTTCGCACAGCATATGTGAAACAGTGCGGCCCAAAAGCTTTCATTGCC
droWil2	scf2_1100000004590:2038433-2038532 +		GATATCGAATACCACAAATGGTCAGGTATTTCGCCTGCTCAATGAGGCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATCAGGACGGCGTATGTAAAGCATTGCGGTGCCAAATCCTTCATTGCC
dp5	XL_group1e:6595961-6596136 +		GATCTCGAACACCACCAACGGCCAGGTCTTTCGCCTGCTCAACGAGGCTGGTGAGTCGTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGCAGC----------------------------------------------------TT-------------------------------------------------GG------------------------------TTTTGTGTATG-GT----------------------------------------GTGTTGTGGAACTTATGTGGAACATTCGAAAATTCAATAGGTATACGCACTGCCTATGTGAAGCATTGCGGGGCGAAGGCCTTTATTGCC
droPer2	scaffold_21:1608250-1608425 +		GATCTCGAACACCACCAACGGCCAGGTCTTTCGCCTGCTCAACGAGGCTGGTGAGTCGTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGCAGC----------------------------------------------------TT-------------------------------------------------TG------------------------------TTTTGTGTATG-GT----------------------------------------GTGTTGTAGAACTTATGTGGAACATTCGAAAATTTAATAGGTATACGCACTGCCTATGTGAAGCATTGCGGGGCGAAGGCCTTTATTGCC
droAna3	scaffold_13117:3583291-3583443 -		GATCTCCAACGCCACCAACGGACAGGTCTTCCGCCTCCTCAACGAAGCAGGTAAGGAATCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------GTTCTAAGTTATAGTTCTATT--------------------------------TA------------------------------TTTTTATTAT-----------------------------------------------TCTT-----------------------------GTAGGTATTCGCACCGCCTATGTGAAGCAGTGTGGCTCGAAGGCCTTCATCGCC
droBip1	scf7180000396499:23848-24013 -		GATCTCCAATACCACCAACGGCCAGGTGTTCCAACTTCTCAAGACGGCAGGTGAGCT-----------TACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGGGG--GGGGCTATCATATAGTTCCT------TC-------------------------------------------------GA------------------------------TTTTTTGTATT-TT----------------------------------------TCTTTGT-----------------------------TTAGGTATTTCTACCCACTATGTTGAGTCGTATGGATCGAAGGCCTTCATCGCC
droKik1	scf7180000302621:49044-49104 +		GATCTCCAATACCACCAACGGTCAGGTGTTTCGGCTGCTCAACGAGGCGGGTGAGTT-----------TACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000454050:564345-564426 -		GATCTCCAACACCACCAACGGTCAGGTGTTCCGACTGCTCAACGAGGCCGGTAAGTTATA-------------GT---------------------------------------------------------------------------------------------TT------------------------------------------------------------------------------------------AT--------------------------------------------------ATCAATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACTTTA
droEle1	scf7180000491028:2654831-2654930 -		CATATCGAACACTACCAATGGACATGTTTTCCGATTGCTGAACAACGCCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTCGCACCGCTTATGTAAAGCCGTGTGGCGAACGGGCCTTCATAGCC
droRho1	scf7180000779985:11371-11445 +		GATCTCCAACACCACCAACGGCCAGGTTTTCCGATTGCTCAACGAGGCCGGTGAGTA-----------TACTTA-------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------ACATTTATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302292:696757-696856 +		CATCTCCAACACAACCAATGGACTCGTTTTCCGTCTACTCAACGAGGCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTCGTACCGCTTACGTGGATCAGTGTGGGGAAAAGGCCTTCACAGCG
droTak1	scf7180000415865:125777-125876 -		AATTTCCAACACCACCAATGGACTGGTTTTTCGGCTACTCAACGAGGCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTCGCACCGCTTACGTGGATCAGTGCGGCGAACAGACCTTCATAGCC
droEug1	scf7180000409110:1056603-1056774 -		GATCTCAAATACTACCAACGGGCAGGTCTTTCGATTGCTTAACGAGGCTGGTAAGTA-----------AAGTTT--------------------------------------------------------------------------------------------ACATTT----------------------------------------------------------------------ACCTTAAT----------------------------------------------------TC-------------------------------------------------GT------------------------------TAATTTGTATA----------------------AT--TTATTTTATATACATTTTTTTCTT-----------------------------CTAGGAATTCGCACCGCCTATGTAAAACAGTGCGGCTCGAAGGCTTTCATCGCT
dm3	chrU:9850094-9850263 -		GATCTCCAATACCACCAACGGTCAGGTCGTCCGGCTGCTCAACGAGGCAGGTGAGTTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--AACTATATAAGTCAAATGAACTATAATGCACGTCAGTCAATTTC-------------------------------------------------TA------------------------------ATTTTTTTAAT-TT--------------------------------------------------------------------------------TCATTCGCACCGCCTATGTGAAGCAGTGCGGCGCCAAGTCCTTCATCGCC
droSim2	x:12011656-12011905 -	dsi_15361	GATCTCCAATACCACCAACGGCCAGGTCTTCAGGCTGCTCAACGAGGCAGGTGAGTG-----------GAATGGC---------------------------------------------------------------------------------------------TTTCAACTTAATTAACAACTAATATAC-AAAATGCAGACGATGGAATGTACATTACCAAT------------------------------ACAACCATACAAGTCAAATGGACTAA--------------------------------------------------------------------GATGCATAACTAGATTGATCAA--TTAATTAATGAA----TG-----------------CTCT------------------------TCAATCC-----------------------------GCAGGCATTCGCACCGCCTATGTGAAACAGTGCGGCGCCAAGGCCTTCATCGCC
droSec2	scaffold_21:408325-408592 -		GATCTCCAATACCACCAACGGCCAGGTCTTCAGGCTGCTCAACGAGGCAGGTGAGTG-----------GAATGGT---------------------------------------------------------------------------------------------TTTCAACTTAATTAACAACTGATATAC-AAAATGCAGACGATTGAATGTACATTACCAATTATACGTAACCCA-----CTCTTTTTGTTG--AACCATACAAGTCAAATGA-------------------------------------------------------------------------AATGCATAACTAGATTGATCAA--TTAATTAATGAA----TG-----------------CTTT------------------------TCAATCC-----------------------------GCAGGCATTCGCACCGCCTATGTGAAACAGTGCAGCGCCAAGGCCTTCATCGCC
droYak3	X:6935363-6935573 -		GATCTCCAATACCACCAACGGTCAGGTGTTTCGACTGCTCAACGAGGCTGGTAAGTTCTAAATGCC----TTCTAAACTTAAATGTACC---------------------------------------------------------------------TACTATTATTA-------------------------------------------------------------------------T---------------------------------------------------------TATT-------------------------------------------------A-------------------------------TTATTATTATTATTATTATTATTATT----ATTATTATTATTA-TTATTA-TTATTATCCC-----------------------------GCAGGCATTCGTACCGCCTATGTGAAGCAGTGCGGCGCCAAGGCGTTCATCGCC
droEre2	scaffold_4690:14194069-14194343 +		GATCTCCAATACCACCAACGGCCAGGTTTTCAGACTGCTCAACGAGGCTGGTGAGTAAA---TGCCTGGAAT----------------------------------------------------------------------------------------------------------------------------ATAATGTAGACACTGG---G----TAACCAATTGAATGCAAGCCAAACTGCAGCCTTTGCTG--ATCCATACAAGTTAAGGC---CACCATTCA--------------------------------------------------------------ATTGCTT-GCCAGATTGATCCACACCAATTTGCCAA----TG-----------------CTCCATTAT--CCATTATCCATTATCCACTATCCC-----------------------------GCAGGCATTCGCACCGCCTATGTGAAGCACTGCGGCGCCAAGGCGTTCATCGCC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

GATCTCCAATACGACCAATGGCCAGGTATTTCGCCTGCTCAACGAGGCCGGTAAGTC-----------TATT-A-------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------ACAT--------------------------------------------------ACACATATTCGCCTCAGACTGACTCTCTATCTCTCTCTCGCTC-----GCTCGCTCGC------------------------TC-G----------------T------------------------TCTCTCT-----------------------------GTAGGCGTACGCACCGCCTATGTGAAGCAGTGTGGGGCGAAGGCTTTTATTGCC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGTGAAGCAGTGTGGGGC................	21	1	3.00	3	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAAGCAGTGTGGGGC................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGTGAAGCAGTGTGGGGCGAA.............	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGCACCGCCTATGTGAAGCAGTG......................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAAGCAGTGTGGGGCGAAGG...........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGTGGGGCGAAGGCTTTTA.....	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................TATTCGCCTCAGACTGACTCTC..............................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATGTGAAGCAGTGTGGGGC................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................ATTTCGCCTGCTCAACGAGGCCGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGAAGCAGTGTGGGGCGAAG............	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTGGGGCGAAGGCTTTTAT....	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCGCCTATGTGAAGCAGT.......................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTATGTGAAGCAGTGT.....................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................ATTTCGCCTGCTCAACGAGGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGCACCGCCTATGTGAAGCA.........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGTGGGGCGAAGGCTTTTATT...	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCTATGTGAAGCAGT.......................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCGCCTATGTGAAGCAGTGTGGGGC................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................AATGGCCAGGTATTTCGCCTGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GCCTGCTCAACGAGGCCGGCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TCTCTCGCTC-----GCTCGCTCGC------------------------TC-G----------------...................................................................................................................	23	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1

droMoj3

GATCTCCAACACGACCAATGGCCAGGTATTTCGCCTGCTCAACGAGGCCGGTAAGTG-----------TCGCTC--------------------------------------------------------------------------------------------TCTCTC----------------------------------------------------------TCTCTCTCTCC-----CCCTCTCTCTTG--TCTCATTTTCGCT-----------------------------------------------------------------------------------------------------------------------CT-----------------ATTT---------------------TGATTTCGCC-----------------------------ATAGGCGTTCGCACTGCATATGTTAAGCAGTGCGGCGAGAAGGCGTTCATTGCC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..TCTCCAACACGACCAATGGCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTGCGGCGAGAAGGCGTTC......	23	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCGGCGAGAAGGCGTTCA.....	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGTGCGGCGAGAAGGCGTTCA.....	25	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................TCTCTC----------------------------------------------------------TCTCTCTCTCC-----CCC........................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0

droGri2

GATCTCGAATACAACCAATGGACATGTCTTTCGGCTGCTCAACGAGGCGGGTAAGGG-----------TACTCGTGATTTAAAAGTACAAAAAAAAGGAGCAAAAAGAAAAAAATTTGACTAGAAAAAAATTGTAGATAATAATCGTAATAGTTAATTTACAGTTATCA-------------------------------------------------------------------------A---------------------------------------------------------TCTC-------------------------------------------------TG------------------------------TCTCTCTCATC-TT----------------------------------------GTGTTGT-----------------------------GTAGGTGTTCGCACAGCATATGTGAAACAGTGCGGCCCAAAAGCTTTCATTGCC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGAAACAGTGCGGCCC................	20	1	3.00	3	2	1
......GAATACAACCAATGGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGTGCGGCCCAAAA............	18	1	2.00	2	2	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTGCGGCCCAAAAGCT.........	19	1	2.00	2	2	0
.............ACCAATGGACATGTCTTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	1	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAAACAGTGCGGCCCAAAAGCTT........	27	1	1.00	1	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCGGCCCAAAAGCTTTCATT...	23	1	1.00	1	1	0
....TCGAATACAACCAATGGACATGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAAACAGTGCGGCCC................	18	1	1.00	1	1	0
.......AATACAACCAATGGACATGTCTTTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0
.........................GTCTTTCGGCTGCTCAACGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAAACAGTGCGGCCCAAAAGCTTT.......	27	1	1.00	1	1	0
........ATACAACCAATGGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0
..................TGGACATGTCTTTCGGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
................................GGCTGCTCAACGAGGCGGGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGTGCGGCCCAAAAGCT.........	21	1	1.00	1	1	0
.................................GCTGCTCAACGAGGCGGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTGTTCGCACAGCATATG................................	21	1	1.00	1	1	0
.............................TTCGGCTGCTCAACGAGGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCATATGTGAAACAGTGCGGC..................	25	1	1.00	1	1	0
......GAATACAACCAATGGACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGCATATGTGAAAC..........................	18	1	1.00	1	1	0
......GAATACAACCAATGGACATGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCATATGTGAAACAGTGCGGCCCA...............	27	1	1.00	1	1	0
GATCTCGAATACAACCAATGGACATGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1
.................ATGGACATGTCTTTCGGCTGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGAAACAGTGCGGCC.................	20	1	1.00	1	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAAACAGTGCGGCCCAAAA............	22	1	1.00	1	0	1
.................................GCTGCTCAACGAGGCGGGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	1.00	2	0	2
..............CCAATGGACATGTCTTTCGGCTGCTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0
....................GACATGTCTTTCGGCTGCTCAACGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0
.................ATGGACATGTCTTTCGGCTGCTCAACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1
.............................TTCGGCTGCTCAACGAGGCGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTGCGGCCCAAAAG...........	18	1	1.00	1	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCATATGTGAAACAGTGC.....................	22	1	1.00	1	1	0
...........CAACCAATGGACATGTCTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCACAGCATATGTGAA............................	18	1	1.00	1	1	0
....................GACATGTCTTTCGGCTGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGTGCGGCCCAAAAGCTTTC......	24	1	1.00	1	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGCACAGCATATGTGA.............................	19	1	1.00	1	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAAACAGTGCGGCCCAAAAGC..........	24	1	1.00	1	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAAACAGTGCGGCCCAAA.............	21	1	1.00	1	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................TT----------------------------------------GTGTTGT-----------------------------GTAGGTGTTCGC..........................................	21	1	1.00	1	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTGCGGCCCAAAAGCTT........	21	1	1.00	1	1	0
............................TTTCGGCTGCTCAACGAGGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGGCCCAAAAGCTTTC......	19	1	1.00	1	1	0
.............ACCAATGGACATGTCTTTCGGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0
.....CGAATACAACCAATGGACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTGCGGCCCAAAAGC..........	18	1	1.00	1	1	0
.......AATACAACCAATGGACATGTCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0
...................................TGCTCAACGAGGCGGGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.67	2	0	2
.................................GCTGCTCAACGAGGCGGGTGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	1
..................................CTGCTCAACGAGGCGGGTGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	1

droWil2

GATATCGAATACCACAAATGGTCAGGTATTTCGCCTGCTCAATGAGGCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATCAGGACGGCGTATGTAAAGCATTGCGGTGCCAAATCCTTCATTGCC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACGGCGTATGTAAAGC..........................	20	1	1.00	1	1	0	0	0	0
................................................GG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATCAGGACGGCGTATGTA..............................	22	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCGTATGTAAAGCATTGC.....................	21	1	1.00	1	0	0	0	0	1
...ATCGAATACCACAAATGGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
......GAATACCACAAATGGTCAGGTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
..................................CTGCTCAATGAGGCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC................................................	18	1	1.00	1	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAAAGCATTGCGGTGCCAAATC..........	27	1	1.00	1	0	0	0	1	0

dp5

GATCTCGAACACCACCAACGGCCAGGTCTTTCGCCTGCTCAACGAGGCTGGTGAGTCGTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGCAGC----------------------------------------------------TT-------------------------------------------------GG------------------------------TTTTGTGTATG-GT----------------------------------------GTGTTGTGGAACTTATGTGGAACATTCGAAAATTCAATAGGTATACGCACTGCCTATGTGAAGCATTGCGGGGCGAAGGCCTTTATTGCC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAAGCATTGCGGGGCGAAG............	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGAAGCATTGCGGGGCG...............	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGCACTGCCTATGTGAAGCATTGC.....................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACTTATGTGGAACATTC...............................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGAACTTATGTGGAACA..................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................TTCGCCTGCTCAACGAGGCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCATTGCGGGGCGAAGG...........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCATTGCGGGGCGAAGGC..........	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................G------------------------------TTTTGTGTATG-GT----------------------------------------GTGTTG....................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTATG-GT----------------------------------------GTGTTGTGG.................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GATCTCGAACACCACCAACGGCCAGGTCTTTCGCCTGCTCAACGAGGCTGGTGAGTCGTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGCAGC----------------------------------------------------TT-------------------------------------------------TG------------------------------TTTTGTGTATG-GT----------------------------------------GTGTTGTAGAACTTATGTGGAACATTCGAAAATTTAATAGGTATACGCACTGCCTATGTGAAGCATTGCGGGGCGAAGGCCTTTATTGCC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAAGCATTGCGGGGC................	19	1	4.00	4	3	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTGTATG-GT----------------------------------------GTGTTGT...................................................................................	20	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCATTGCGGGGCGAAG............	21	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGGCGAAGGCCTTTATTGC.	21	1	1.00	1	0	0	0	0	1	0

droAna3

GATCTCCAACGCCACCAACGGACAGGTCTTCCGCCTCCTCAACGAAGCAGGTAAGGAATCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------GTTCTAAGTTATAGTTCTATT--------------------------------TA------------------------------TTTTTATTAT-----------------------------------------------TCTT-----------------------------GTAGGTATTCGCACCGCCTATGTGAAGCAGTGTGGCTCGAAGGCCTTCATCGCC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACCGCCTATGTGAAGCAGTGTGGC..................	27	1	1.00	1	0	0	0	0	1	0
.........................................................ATCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------GTTCTAAGTTATAGTT.....................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGTGTGGCTCGAAGGCC.........	21	1	1.00	1	0	0	0	0	0	1
.......AACGCCACCAACGGACAGGTCTTCCGCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.....CCAACGCCACCAACGGACAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGTGGCTCGAAGGCCTTCATC...	25	1	1.00	1	0	0	0	0	0	1
..................................................GTAAGGAATCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------GTTCTAAGTTATA........................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
GATCTCCAACGCCACCAACGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCAGTGTGGCTCGAAGG...........	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAAGCAGTGTGGCTCGAAGGC..........	25	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCGAAGGCCTTCATCGCC	23	1	1.00	1	1	0	0	0	0	0
................AACGGACAGGTCTTCCGCCTCCTCAACGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	2	0.50	1	1	0	0	0	0	0
.............ACCAACGGACAGGTCTTCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACCGCCTATGTGAAGC..........................	19	2	0.50	1	0	1	0	0	0	0

droBip1

GATCTCCAATACCACCAACGGCCAGGTGTTCCAACTTCTCAAGACGGCAGGTGAGCT-----------TACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGGGG--GGGGCTATCATATAGTTCCT------TC-------------------------------------------------GA------------------------------TTTTTTGTATT-TT----------------------------------------TCTTTGT-----------------------------TTAGGTATTTCTACCCACTATGTTGAGTCGTATGGATCGAAGGCCTTCATCGCC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GATCTCCAATACCACCAACGGTCAGGTGTTTCGGCTGCTCAACGAGGCGGGTGAGTT-----------TACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GATCTCCAACACCACCAACGGTCAGGTGTTCCGACTGCTCAACGAGGCCGGTAAGTTATA-------------GT---------------------------------------------------------------------------------------------TT------------------------------------------------------------------------------------------AT--------------------------------------------------ATCAATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACTTTA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CATATCGAACACTACCAATGGACATGTTTTCCGATTGCTGAACAACGCCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTCGCACCGCTTATGTAAAGCCGTGTGGCGAACGGGCCTTCATAGCC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GATCTCCAACACCACCAACGGCCAGGTTTTCCGATTGCTCAACGAGGCCGGTGAGTA-----------TACTTA-------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------ACATTTATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CATCTCCAACACAACCAATGGACTCGTTTTCCGTCTACTCAACGAGGCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTCGTACCGCTTACGTGGATCAGTGTGGGGAAAAGGCCTTCACAGCG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AATTTCCAACACCACCAATGGACTGGTTTTTCGGCTACTCAACGAGGCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTCGCACCGCTTACGTGGATCAGTGCGGCGAACAGACCTTCATAGCC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GATCTCAAATACTACCAACGGGCAGGTCTTTCGATTGCTTAACGAGGCTGGTAAGTA-----------AAGTTT--------------------------------------------------------------------------------------------ACATTT----------------------------------------------------------------------ACCTTAAT----------------------------------------------------TC-------------------------------------------------GT------------------------------TAATTTGTATA----------------------AT--TTATTTTATATACATTTTTTTCTT-----------------------------CTAGGAATTCGCACCGCCTATGTAAAACAGTGCGGCTCGAAGGCTTTCATCGCT	Size	Hit Count	Total Norm	Total
No Reads

dm3

GATCTCCAATACCACCAACGGTCAGGTCGTCCGGCTGCTCAACGAGGCAGGTGAGTTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--AACTATATAAGTCAAATGAACTATAATGCACGTCAGTCAATTTC-------------------------------------------------TA------------------------------ATTTTTTTAAT-TT--------------------------------------------------------------------------------TCATTCGCACCGCCTATGTGAAGCAGTGCGGCGCCAAGTCCTTCATCGCC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGAAGCAGTGCGGCGCC...............	21	6	1.17	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACCGCCTATGTGAAGCAG........................	21	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCACCGCCTATGTGAA............................	19	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTATGTGAAGCAGTGCGGCGC................	24	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGCACCGCCTATGTGAAGCAGTGC.....................	27	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCTATGTGAAGCAGTGCG....................	21	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAAGCAGTGCGGCGCCA..............	20	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGTGCGGCGCCAG.............	17	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GATCTCCAATACCACCAACGGCCAGGTCTTCAGGCTGCTCAACGAGGCAGGTGAGTG-----------GAATGGC---------------------------------------------------------------------------------------------TTTCAACTTAATTAACAACTAATATAC-AAAATGCAGACGATGGAATGTACATTACCAAT------------------------------ACAACCATACAAGTCAAATGGACTAA--------------------------------------------------------------------GATGCATAACTAGATTGATCAA--TTAATTAATGAA----TG-----------------CTCT------------------------TCAATCC-----------------------------GCAGGCATTCGCACCGCCTATGTGAAACAGTGCGGCGCCAAGGCCTTCATCGCC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGAAACAGTGCGGC..................	18	1	11.00	11	9	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCCTATGTGAAACAGTGC.....................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTATGTGAAACAGTGCGGC..................	20	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................ATGGACTAA--------------------------------------------------------------------GATGCATAACT......................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................ACGGCCAGGTCTTCAGGCTGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTATGTGAAACAGTGCG....................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTGAGTG-----------GAATGGC---------------------------------------------------------------------------------------------TTTCAACTTT...............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................TAC-AAAATGCAGACGATGGAATGTACA.....................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................ATTGATCAA--TTAATTAATG...............................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TAC-AAAATGCAGACGATGGAATG.........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTATGTGAAACAGTGCGGCGC................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................GACGATGGAATGTACATTA..................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................AC-AAAATGCAGACGATGGAAT..........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
............CACCAACGGCCAGGTCTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TAATATAC-AAAATGCAGACGATGGAATG.........................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................GGCCAGGTCTTCAGGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAAACAGTGCGGCGCCAAGGCCTT.......	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATGTGAAACAGTGCG....................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................GGCCAGGTCTTCAGGCTGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................TTGATCAA--TTAATTAATGA..............................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droSec2

GATCTCCAATACCACCAACGGCCAGGTCTTCAGGCTGCTCAACGAGGCAGGTGAGTG-----------GAATGGT---------------------------------------------------------------------------------------------TTTCAACTTAATTAACAACTGATATAC-AAAATGCAGACGATTGAATGTACATTACCAATTATACGTAACCCA-----CTCTTTTTGTTG--AACCATACAAGTCAAATGA-------------------------------------------------------------------------AATGCATAACTAGATTGATCAA--TTAATTAATGAA----TG-----------------CTTT------------------------TCAATCC-----------------------------GCAGGCATTCGCACCGCCTATGTGAAACAGTGCAGCGCCAAGGCCTTCATCGCC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......AATACCACCAACGGCCAGGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	1	0	1	0
....................................................................................................................................................................................................................................TATACGTAACCCA-----CTCTTTTT...................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCCTATGTGAAACAGT.......................	19	1	1.00	1	0	0	1	0
.......AATACCACCAACGGCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................TGCAGACGATTGAATGTACAT....................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
.......AATACCACCAACGGCCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTGCAGCGCCAAGGCCTT.......	22	1	1.00	1	0	0	0	1
..................................CTGCTCAACGAGGCAGGTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
.................................................................................................................................................................................................................................................................................AAATGA-------------------------------------------------------------------------AATGCATAACTAGA...................................................................................................................................................................	20	1	1.00	1	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTGCAGCGCCAAGGCCTTCATCGCC	28	1	1.00	1	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGCAGCGCCAAGGCCTTC......	21	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTATGTGAAACAGTGCAGCGCCA..............	26	1	1.00	1	0	0	0	1
..................................................................................................................................................................................................................................................................................AATGA-------------------------------------------------------------------------AATGCATAACTAGATT.................................................................................................................................................................	21	1	1.00	1	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCCTATGTGAAACAGTGCAGCGCC...............	27	1	1.00	1	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGCCAAGGCCTTCATCGC.	21	1	1.00	1	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTGCAGCGCCAAGGCCTTT......	23	1	1.00	1	0	0	0	1
...CTCCAATACCACCAACGGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
............................TTCAGGCTGCTCAACGAGGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1

droYak3

GATCTCCAATACCACCAACGGTCAGGTGTTTCGACTGCTCAACGAGGCTGGTAAGTTCTAAATGCC----TTCTAAACTTAAATGTACC---------------------------------------------------------------------TACTATTATTA-------------------------------------------------------------------------T---------------------------------------------------------TATT-------------------------------------------------A-------------------------------TTATTATTATTATTATTATTATTATT----ATTATTATTATTA-TTATTA-TTATTATCCC-----------------------------GCAGGCATTCGTACCGCCTATGTGAAGCAGTGCGGCGCCAAGGCGTTCATCGCC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGTGAAGCAGTGCGGCGCCAAGGC..........	27	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGTGCGGCGCCAAGGCGTTC......	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAAGCAGTGCGGCGCCAAGGCGTT.......	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAAGCAGTGCGGCGCCA..............	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGAAGCAGTGCGGCGC................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTACCGCCTATGTGAAGCAGT.......................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGTGAAGCAGTGCGGCGCCAA.............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGAAGCAGTGCGGCGCCAAG............	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATGTGAAGCAGTGCGG...................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGCGGCGCCAAGGCGTTCATCGCC	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCAGTGCGGCGCCAA.............	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................GTTTCGACTGCTCAACGAGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
......................................TCAACGAGGCTGGTAAGTTCTAAATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
...........................GTTTCGACTGCTCAACGAGGCTGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

GATCTCCAATACCACCAACGGCCAGGTTTTCAGACTGCTCAACGAGGCTGGTGAGTAAA---TGCCTGGAAT----------------------------------------------------------------------------------------------------------------------------ATAATGTAGACACTGG---G----TAACCAATTGAATGCAAGCCAAACTGCAGCCTTTGCTG--ATCCATACAAGTTAAGGC---CACCATTCA--------------------------------------------------------------ATTGCTT-GCCAGATTGATCCACACCAATTTGCCAA----TG-----------------CTCCATTAT--CCATTATCCATTATCCACTATCCC-----------------------------GCAGGCATTCGCACCGCCTATGTGAAGCACTGCGGCGCCAAGGCGTTCATCGCC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................................................................................................................................................................................................................GC---CACCATTCA--------------------------------------------------------------ATTGCTT-GCCAGAT..................................................................................................................................................................	25	1	14.00	14	0	0	0	0	0	0	14
......................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTATCCATTATCCACTATCCC-----------------------------GCA...................................................	27	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATTATCCACTATCCC-----------------------------GCAG..................................................	22	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCACTGCGGCGCCAAGGCGT........	22	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCACTGCGGCGCCAAGGC..........	22	1	1.00	1	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGTGAAGCACTGCGGCGCCAAGGC..........	27	1	1.00	1	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCACTGCGGCGCCAAGT...........	21	1	1.00	1	0	0	0	1	0	0	0
...................GGCCAGGTTTTCAGACTGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTGCGGCGCCAAGGCGTTCATCGCC	28	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCACTGCGGCGCCAAGG...........	21	1	1.00	1	0	0	0	0	0	1	0
......................CAGGTTTTCAGACTGCTCAACGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGAAGCACTGCGGC..................	18	1	1.00	1	0	0	0	0	0	1	0

dvi_8629

scaffold_12928:2336637-2336721 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-1.1	-0.6	-0.5