ID:

dvi_8452

 Coordinate:

scaffold_12928:1374652-1374802 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ16640-cds]; exon [dvir_GLEANR_17144:23]; intron [Dvir\GJ16640-in]

Repeatable elements

NameClassFamilyStrand
(T)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGAATGCCAGTGCAAGGCACGTTTCACAGGCGATCGTTGCCAGGATTTCGGTGAGTAGTTGCTCCAAGCATAGGTATTCAAAAAACAAGATATACAAAAAAAAAAAAAAAAAAGAAAAGCAAAATAAATATATTAATATGAAGTTTGGTCTAAATGGGCACCAGACTCCCTGCCCTGCCAATCGGAACCCACGCATTGTTCTCTTTGAACACAATCGATTCATGATCCAGCTCTTATGATCTACGCTTTTC
**************************************************.((((((..((((...))))....)))))).............................................................((((((((((.....)).))))))))...........((((((.......)).))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 GSM1528803
follicle cells		 SRR060665
9_females_carcasses_total
 SRR060679
140x9_testes_total
 V047
embryo
 M028
head
 M047
female body
 SRR060674
9x140_ovaries_total
 M027
male body		 V053
head
 SRR060684
140x9_0-2h_embryos_total
..............................CGATCGTTGCCAGGATTTCGAC....................................................................................................................................................................................................... 22 2 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0
.....................................TGCCAGGATTTCGGTGAGTAGTTGCTCC.......................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............GGCACGTTTCACAGGCGATC........................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................ACGTTTCACAGGCGATCGTT..................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
CGAATGCCAGTGCAAGGCACGT..................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................CAGGCGATCGTTGCCAGGATTTCG......................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...ATGTCAGTGCAAGGCACGTTTCACAGGC............................................................................................................................................................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........GCAAGGCACGTTTCACAGGC............................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................ACAGGCGATCGTTGCCAGGATTTCGAC....................................................................................................................................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CCACATCCAGCTCTTATGATCTA........ 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
....................GTTTCACAGGCGATCGTTG.................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........................CAGGCGATCGTTGCCAGGATTTC.......................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................GTTTCACAGGCGATCGTTGCCAGGATT............................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...................CGTTTCACAGGCGATCGTTGC................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................ACAGGCGATCGTTGCCAGGAT............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................ATCGTTGCCAGGATTTCGAC....................................................................................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GGGCACCACCATCCCTGCCCT........................................................................... 21 3 4 0.50 2 0 0 0 0 0 0 2 0 0 0 0
................................................................................................................................................................................................................................AGCCAGCTCTTATGAGCTA........ 19 2 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................AGATTGGTCTTAAGGGGC............................................................................................ 18 3 20 0.25 5 0 0 0 0 0 0 0 0 5 0 0
................................................................................................................................................................................................................................ATCCAGCTTTTAGGATCT......... 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0
...................................................................................TACAAGCTATACAAAAAAAAAAAA................................................................................................................................................ 24 2 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0
.................................TCCTCGCCAGGATTTCG......................................................................................................................................................................................................... 17 2 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CTATTGATGATCTAGCTCT................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCTTACGGTCACGTTCCGTGCAAAGTGTCCGCTAGCAACGGTCCTAAAGCCACTCATCAACGAGGTTCGTATCCATAAGTTTTTTGTTCTATATGTTTTTTTTTTTTTTTTTTCTTTTCGTTTTATTTATATAATTATACTTCAAACCAGATTTACCCGTGGTCTGAGGGACGGGACGGTTAGCCTTGGGTGCGTAACAAGAGAAACTTGTGTTAGCTAAGTACTAGGTCGAGAATACTAGATGCGAAAAG
**************************************************.((((((..((((...))))....)))))).............................................................((((((((((.....)).))))))))...........((((((.......)).))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 GSM1528803
follicle cells		 V047
embryo
 M047
female body
 SRR1106717
embryo_6-8h
 SRR1106719
embryo_8-10h
 SRR1106728
larvae
 SRR060682
9x140_0-2h_embryos_total
 SRR060657
140_testes_total
 SRR1106729
mixed whole adult body
 SRR060687
9_0-2h_embryos_total
 SRR1106724
embryo_12-14h
..............................................................................................................................................................GTGGTATGATGGAAGGGACGGT....................................................................... 22 3 1 29.00 29 28 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................CTCTGAGGGTCGGGACGATTA..................................................................... 21 3 1 28.00 28 0 28 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GTGGTATGAAGGAAGGGACGGT....................................................................... 22 3 1 10.00 10 10 0 0 0 0 0 0 0 0 0 0 0
...............................................................GGTTGGTATCCATCAGTTTCTT...................................................................................................................................................................... 22 3 1 3.00 3 0 0 0 0 1 1 1 0 0 0 0 0
..............................................................................................................................................................GTGGTTTGATGGAAGGGACGGT....................................................................... 22 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TGGTATGATGGAAGGGACGGT....................................................................... 21 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TGGTATGATGGATGGGACGGT....................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....ACGGCCACGTTCCGTGCCAAAT................................................................................................................................................................................................................................. 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................ATCTGAGGGTCGGGACGATTA..................................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GTGGTTTGAAGGAAGGGACGGT....................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GTGGGATGAGGGAAGGGACGGT....................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
......GGCCACGTTCCGTGCCAAAT................................................................................................................................................................................................................................. 20 3 4 0.50 2 0 0 0 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................GTGGTATGAGGGGAGGGACGGT....................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GTGGTATGAGGGAAGGTACGGT....................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TAACTACTAGGACGAGAAT............... 19 2 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................GGTATGATGGATGGGACGGT....................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................CGTGGTCGGAGGGACGCGGC.......................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................ATCCATAAGTTTCTT...................................................................................................................................................................... 15 1 20 0.15 3 0 0 0 0 0 0 0 0 0 2 0 1
..................................................................................................................................................................................................................TGGTAGCAAAGTAGTAGGTC..................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................ATTCACCAGTGGTCTGAAG.................................................................................. 19 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TGTTAGCTTAGTCGTAGGTC..................... 20 3 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AGTACTAGTTTGAGAGTAC............. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................CTAAAGCCACTGATCAATC............................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................CTGAGGAACGGCACGGTAA..................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:1374602-1374852 - dvi_8452 CGAATGCCAGTGCAAGGCACGTTTCACAGGCGATCGTTGCCAGGATTTCGGTGAGTAGTTGC-TCCAAG------------------------------------------------------------------------CATAGGTATTCAAAAAACAAGATATACAAAAAAAAAAAAAAAAAAGAA------AAG----CAAAATAAATATATTAATATGA----------------AGTTTGGTC-TAAATGGG---------------------------CACCAGACTCCCTGCCCTGCCAA--------------------------TCGGAACCCA------------------------CGCATTGTTCTCTTTGAACACAATCGATTCAT---------GATCCAGCTCT-----------TAT--GATCTA--------------CGCTTTTC
droMoj3 scaffold_6473:13633661-13633952 + CGAGTGCCAGTGCAAGCAGAATTTCAAGGGCGATCGTTGCCAGGACTTCGGTAAGTAGCTGTGCT--GGCAGCACGGCAGCATACATCGAAAATTAGAGGCAAAGCCAAATGAAAACGAGAAGAGGAAACCATTTAACTGG-------------------------------------------------------------------------ATCTATCTGT----------------AGTTTGGTCTAGAATGGG---------------------------CACCAGACTT-----------AGATACAAACCGATTGTGCCCCCACCCAG---------TCAAGTCGATTGGACGCGAACTTTCAGTTTCTTCAGCTTGAATTCAGCCAAATCAT--GA----TGATCCAGCTCT-----------TATCAGAATTC--------------C---GCTT
droGri2 scaffold_15203:8356595-8356823 + GGAGTGCCAGTGCAAGCCACGTTTCACTGGCGATCGTTGCCAGGACATCGGTGAGTAACGACT--ACTGCCTC---------------GTCCCACATATGGCGTGTAATATGATAGCAATAACATCAACCAATCAGTCCGG---------------------------------------A------TC------GAC----TTAAGTCCTTAGTTTGGGA--------------------------TC-TAAATGGG---------------------------CACCAAACTT------TAGCCATATACAAAGCCCT--TGCCAAAACC----CAAATCCA------------------------CC--------------------AATGATTCAT---------GA------------------------------A--------------CGCTTCCC
droWil2 scf2_1100000004516:223210-223375 - AAAGAAAAAAAATATAAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAATAAAAGAGAA------CAC----TCA--------------AACGAATTCATTCATTT--GCAATTTTA-------------------------------------------CATTT------TTGCCAA--------------------------TTACAGCACAGCTGAT------------------TGCATTGTTACCATTTTGTGAAACATAT------------------------CAGCTAGCCCTCTC--TATCTATCTGTCGTTTCAGTCTCTTTCC
dp5 XL_group1a:3314815-3314897 + GTGAGTTTGTTT-----------G---------------------------------------TCAAAG--------------------------------CG--------------------------------------TAAA-CAATTGCAAAAAAAAAATATACAAAAAAGCAAAGAAAAAAGCA------GA---------------AA-----CAACAG--------------------------------------------------------------------------------------------------------------CAAA----------------------------------------------------------------------------------------------------------------------------A
droPer2 scaffold_21:1450715-1450815 + AACACACAGAAAGAAAGAAAGAAAGAAAGGAATGAAGAAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATAGAATAA----------------AAAGAAAGC-AAAAAGGG---------------------------AATACGAGTAGCTGCCCTGCGCA--------------------------GCGAA----------------------------------------------------------------------------------------------------------------------------A
droAna3 scaffold_12929:2290916-2290981 - CCAGTGCCAGTGCAGGCCGCGCTGGAAGGGCGACCAGTGCCGGGAGATCGGTGAGTGATCGGTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droBip1 scf7180000396434:284827-284885 - CCAGTGCCAGTGCAAGCCGCACTGGAAGGGCGACCAATGCCGAGAGATCGGTAAGTGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302610:776184-776243 + AAGGAATACATTAAAGAAATAAATTAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------TA------AAG----TTAAATAAATAAATTGAAAAAA----------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTT
droFic1 scf7180000453927:181540-181623 - CCAGTGTCGGTGCAAGCCGCGCTGGAAGGGAGATCGCTGTCGCGAAATTGGTAAGTTTTTAACTCGAGG------------------------------------------------------------------------TAGA-GAACTCTAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491011:697464-697524 - CGAATGCCGGTGCAAGCCACGCTGGAAGGGCGATCGCTGTCGCGAAATTGGTGAGTGGATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779506:487889-487968 - CGAGTGCCGGTGCAAGCCACGCTGGAAGGGCGATCGCTGTCGCGAAATTGGTGAGTGGAGGAATTCAAG------------------------------------------------------------------------TATAGGAACTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301760:4785628-4785683 + CGAGTGTCGATGCAGACCACGCTGGAGGGGTGATCGTTGTCGTGAAATCGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415151:426697-426752 + CGAATGCCAGTGCAGGCCACGCTGGAGGGGTGATCGCTGCCGGGAAATTGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409631:252842-252925 - AAAATATAAAAAGAAAAATAGAAGCAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------AA------AAA----CCGAATAAATTTCCTCAGATCA----------------GGGGGAGGC-AAAAGCGG------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGC--------------------------------CAACCCCC
dm3 chrX:2380918-2381009 - TGAATGTCGTTGCAAGGCACGTTGGAAGGGCGATCGGTGTCGCGAGATCGGTGAGTGAAGAATTTAAAG------------------------------------------------------------------------TATCGTTACTCATCAAATGACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droSim2 x:2195117-2195208 - TGAATGTCGTTGCAAGCCACGTTGGAAGGGCGATCGGTGTCGCGAGATCGGTGAGTGAAAAACTTCAAG------------------------------------------------------------------------TATCGTTACTCATCAAATGACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droSec2 scaffold_10:2156701-2156792 - TGAATGTCGTTGCAAGCCACGTTGGAAGGGCGATCGGTGTCGCGAGATCGGTGAGTGAAAAACTTCAAG------------------------------------------------------------------------TATCGTTACTCATCAAATGACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droYak3 X:3432171-3432280 - AAAGAAAAAAAAAACAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAAAAAAAAAAA------AA---------------AA-----AATGAACAGATGCA-----------AAAAC-AATGTGAAGATATTTTGCGGCGCAACCTTGAGGTGCACC-----------------------------------------------------------------------------------------------------------------------------------ACAC--------------------------------CCACAGCC
droEre2 scaffold_4644:2114385-2114582 + CTACGCCTAGGAG--TTTACATT--------------------------------------------------------------------------------------------------------------------------------------AGGAAATACACACAAAAAAAAACCTTTTGGCAGAGGAGCCCTTGGCGAAATACATACAT------------------GTATGCAGATACG---------------------------------------------------------------------CAATTGATATCGTATCACC---------TCAGATCGGATATACTGGTACATACATATGTAACGTTCT--ACATGCTAGATGCTTATTGTGGCTCATAAAGCTCTTCTC--------------------------------CCCTCTTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CGAATGCCAGTGCAAGGCACGTTTCACAGGCGATCGTTGCCAGGATTTCGGTGAGTAGTTGC-TCCAAG------------------------------------------------------------------------CATAGGTATTCAAAAAACAAGATATACAAAAAAAAAAAAAAAAAAGAA------AAG----CAAAATAAATATATTAATATGA----------------AGTTTGGTC-TAAATGGG---------------------------CACCAGACTCCCTGCCCTGCCAA--------------------------TCGGAACCCA------------------------CGCATTGTTCTCTTTGAACACAATCGATTCAT---------GATCCAGCTCT-----------TAT--GATCTA--------------CGCTTTTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................CGATCGTTGCCAGGATTTCGAC............................................................................................................................................................................................................................................................................................................................................................................................................................2213.003000000000000000000000000000000000000000000000000000000000000003
.....................................TGCCAGGATTTCGGTGAGTAGTTGC-TCC..............................................................................................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
...............GGCACGTTTCACAGGCGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
..................ACGTTTCACAGGCGATCGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
CGAATGCCAGTGCAAGGCACGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
..........................CAGGCGATCGTTGCCAGGATTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
...........GCAAGGCACGTTTCACAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.........................ACAGGCGATCGTTGCCAGGATTTCGAC............................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000001
....................GTTTCACAGGCGATCGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
..........................CAGGCGATCGTTGCCAGGATTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
....................GTTTCACAGGCGATCGTTGCCAGGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000000000000000000000000000000000000000000000000000000000000
...................CGTTTCACAGGCGATCGTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
.........................ACAGGCGATCGTTGCCAGGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
................................ATCGTTGCCAGGATTTCGAC............................................................................................................................................................................................................................................................................................................................................................................................................................2020.501000100000000000000000000000000000000000000000000000000000000000
droMoj3
CGAGTGCCAGTGCAAGCAGAATTTCAAGGGCGATCGTTGCCAGGACTTCGGTAAGTAGCTGTGCT--GGCAGCACGGCAGCATACATCGAAAATTAGAGGCAAAGCCAAATGAAAACGAGAAGAGGAAACCATTTAACTGG-------------------------------------------------------------------------ATCTATCTGT----------------AGTTTGGTCTAGAATGGG---------------------------CACCAGACTT-----------AGATACAAACCGATTGTGCCCCCACCCAG---------TCAAGTCGATTGGACGCGAACTTTCAGTTTCTTCAGCTTGAATTCAGCCAAATCAT--GA----TGATCCAGCTCT-----------TATCAGAATTC--------------C---GCTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................AGAATTTCAAGGGCGATCGTTGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
droGri2
GGAGTGCCAGTGCAAGCCACGTTTCACTGGCGATCGTTGCCAGGACATCGGTGAGTAACGACT--ACTGCCTC---------------GTCCCACATATGGCGTGTAATATGATAGCAATAACATCAACCAATCAGTCCGG---------------------------------------A------TC------GAC----TTAAGTCCTTAGTTTGGGA--------------------------TC-TAAATGGG---------------------------CACCAAACTT------TAGCCATATACAAAGCCCT--TGCCAAAACC----CAAATCCA------------------------CC--------------------AATGATTCAT---------GA------------------------------A--------------CGCTTCCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................GATCGTTGCCAGGACATC...............................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
.GAGTGCCAGTGCAAGCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
.....GCCAGTGCAAGCCACGTTTCACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110
............CAAGCCACGTTTCACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
droWil2
AAAGAAAAAAAATATAAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAATAAAAGAGAA------CAC----TCA--------------AACGAATTCATTCATTT--GCAATTTTA-------------------------------------------CATTT------TTGCCAA--------------------------TTACAGCACAGCTGAT------------------TGCATTGTTACCATTTTGTGAAACATAT------------------------CAGCTAGCCCTCTC--TATCTATCTGTCGTTTCAGTCTCTTTCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
GTGAGTTTGTTT-----------G---------------------------------------TCAAAG--------------------------------CG--------------------------------------TAAA-CAATTGCAAAAAAAAAATATACAAAAAAGCAAAGAAAAAAGCA------GA---------------AA-----CAACAG--------------------------------------------------------------------------------------------------------------CAAA----------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................AGCA------GA---------------AA-----CAACAG--------------------------------------------------------------------------------------------------------------CA...............................................................................................................................16140.0710000000100
droPer2
AACACACAGAAAGAAAGAAAGAAAGAAAGGAATGAAGAAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATAGAATAA----------------AAAGAAAGC-AAAAAGGG---------------------------AATACGAGTAGCTGCCCTGCGCA--------------------------GCGAA----------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CCAGTGCCAGTGCAGGCCGCGCTGGAAGGGCGACCAGTGCCGGGAGATCGGTGAGTGATCGGTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........GTGCAGGCCGCGCTGGAAGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003120000
...............................GACCAGTGCCGGGAGATCGAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
.........GTGCAGGCCGCGCTGGAAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..........TGCAGGCCGCGCTGGAAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
....................GCTGGAAGGGCGACCAGTGCCGGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
........AGTGCAGGCCGCGCTGGAAGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
...........GCAGGCCGCGCTGGAAGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.........GTGCAGGCCGCGCTGGAAGGGCGACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
droBip1
CCAGTGCCAGTGCAAGCCGCACTGGAAGGGCGACCAATGCCGAGAGATCGGTAAGTGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AAGGAATACATTAAAGAAATAAATTAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------TA------AAG----TTAAATAAATAAATTGAAAAAA----------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTSizeHit CountTotal NormTotal
No Reads
droFic1
CCAGTGTCGGTGCAAGCCGCGCTGGAAGGGAGATCGCTGTCGCGAAATTGGTAAGTTTTTAACTCGAGG------------------------------------------------------------------------TAGA-GAACTCTAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CGAATGCCGGTGCAAGCCACGCTGGAAGGGCGATCGCTGTCGCGAAATTGGTGAGTGGATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CGAGTGCCGGTGCAAGCCACGCTGGAAGGGCGATCGCTGTCGCGAAATTGGTGAGTGGAGGAATTCAAG------------------------------------------------------------------------TATAGGAACTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CGAGTGTCGATGCAGACCACGCTGGAGGGGTGATCGTTGTCGTGAAATCGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CGAATGCCAGTGCAGGCCACGCTGGAGGGGTGATCGCTGCCGGGAAATTGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AAAATATAAAAAGAAAAATAGAAGCAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------AA------AAA----CCGAATAAATTTCCTCAGATCA----------------GGGGGAGGC-AAAAGCGG------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGC--------------------------------CAACCCCCSizeHit CountTotal NormTotal
No Reads
dm3
TGAATGTCGTTGCAAGGCACGTTGGAAGGGCGATCGGTGTCGCGAGATCGGTGAGTGAAGAATTTAAAG------------------------------------------------------------------------TATCGTTACTCATCAAATGACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....TGTCGTTGCAAGGCACGTTGGAAGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................27110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000012600000
...........GCAAGGCACGTTGGAAGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2019.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................CGTTGGAAGGGCGATCGGTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............AGGCACGTTGGAAGGGCGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2016.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TCGGTGTCGCGAGATCGGTGAGTGAAGAA..................................................................................................................................................................................................................................................................................................................................................................................................................2914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TGCAAGGCACGTTGGAAGGGCGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................AGGGCGATCGGTGTCGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CGTTGCAAGGCACGTTGGAAGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GGCGATCGGTGTCGCGAGATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000
..........TGCAAGGCACGTTGGAAGGGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AGGGCGATCGGTGTCGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GTTGGAAGGGCGATCGGTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000100000
.................................TCGGTGTCGCGAGATCGGTGAGTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AAGGCACGTTGGAAGGGCGATCGGTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
........GTTGCAAGGCACGTTGGAAGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........TGCAAGGCACGTTGGAAGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CACGTTGGAAGGGCGATCGGTGTCGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GGGCGATCGGTGTCGCGAGATC...............................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000100000
....................GTTGGAAGGGCGATCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................1831.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GAATGTCGTTGCAAGGCACGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............CAAGGCACGTTGGAAGGGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GAATGTCGTTGCAAGGCACGTTGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CGTTGGAAGGGCGATCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TTGGAAGGGCGATCGGTGTCGCGAGAT................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.............................GCGATCGGTGTCGCGAGATCGACA...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ACGTTGGAAGGGCGATCGGTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AATGTCGTTGCAAGGCACGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
........................GAAGGGCGATCGGTGTCGCGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GATCGGTGTCGCGAGATC...............................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AATGTCGTTGCAAGGCACGTTGGAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGAATGTCGTTGCAAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
TGAATGTCGTTGCAAGGCACGTTGGAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GGGCGATCGGTGTCGCGAGATCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................TTGGAAGGGCGATCGGTGTCGCGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TTGGAAGGGCGATCGGTGTCGCGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................ATCGGTGTCGCGAGATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GTCGTTGCAAGGCACGTTGGAAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................ACGTTGGAAGGGCGATCGGTGTCGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.....................TTGGAAGGGCGATCGGTGTCGCGAGATC...............................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................AAGGGCGATCGGTGTCGCGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.GAATGTCGTTGCAAGGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....TGTCGTTGCAAGGCACGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TCGGTGTCGCGAGATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TCGTTGCAAGGCACGTTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TCGCGAGATCGGTGAGTGAAGAATT................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TTGCAAGGCACGTTGGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TGCAAGGCACGTTGGAAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CACGTTGGAAGGGCGATCGGTGTCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........TTGCAAGGCACGTTGGAAGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
................................ATCGGTGTCGCGAGATCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......CGTTGCAAGGCACGTTGGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGAATGTCGTTGCAAGGCACGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...............................GATCGGTGTCGCGAGATCGACA...........................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGAATGTCGTTGCAAGCCACGTTGGAAGGGCGATCGGTGTCGCGAGATCGGTGAGTGAAAAACTTCAAG------------------------------------------------------------------------TATCGTTACTCATCAAATGACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....TGTCGTTGCAAGCCACGTTGGAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000100000
..........TGCAAGCCACGTTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.....GTCGTTGCAAGCCACGTTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
.GAATGTCGTTGCAAGCCACGTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000100000
..........TGCAAGCCACGTTGGAAGGGCGATCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
................................ATCGGTGTCGCGAGATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
droSec2
TGAATGTCGTTGCAAGCCACGTTGGAAGGGCGATCGGTGTCGCGAGATCGGTGAGTGAAAAACTTCAAG------------------------------------------------------------------------TATCGTTACTCATCAAATGACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........GCAAGCCACGTTGGAAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020020
..........................AGGGCGATCGGTGTCGCGAGATCGACA...........................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020020
.............AAGCCACGTTGGAAGGGCGATCGGTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020020
...ATGTCGTTGCAAGCCACGTTGGAAGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020020
...........GCAAGCCACGTTGGAAGGGCGATCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020110
..............AGCCACGTTGGAAGGGCGATCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
........GTTGCAAGCCACGTTGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.......CGTTGCAAGCCACGTTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.........................AAGGGCGATCGGTGTCGCGAGATCGACA...........................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010
...............................GATCGGTGTCGCGAGATCGACA...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
........GTTGCAAGCCACGTTGGAAGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
..................ACGTTGGAAGGGCGATCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
................CCACGTTGGAAGGGCGATCGGTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
..........TGCAAGCCACGTTGGAAGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
..............AGCCACGTTGGAAGGGCGATCGGTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
.........................AAGGGCGATCGGTGTCGCGAGATCGAC............................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
TGAATGTCGTTGCAAGCCACGTTGGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
............................GGCGATCGGTGTCGCGAGATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
...............GCCACGTTGGAAGGGCGATCGGTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.....GTCGTTGCAAGCCACGTTGGAAGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
.................CACGTTGGAAGGGCGATCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.......CGTTGCAAGCCACGTTGGAAGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.............AAGCCACGTTGGAAGGGCGATCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
droYak3
AAAGAAAAAAAAAACAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAAAAAAAAAAA------AA---------------AA-----AATGAACAGATGCA-----------AAAAC-AATGTGAAGATATTTTGCGGCGCAACCTTGAGGTGCACC-----------------------------------------------------------------------------------------------------------------------------------ACAC--------------------------------CCACAGCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......AAAAAAAACAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAAAAAAAAAAA------AA---------------AA-----AA...................................................................................................................................................................................................................................................3612.00200020000000
....AAAAAAAAAACAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAAAAAAAAAAA------AA---------------A...........................................................................................................................................................................................................................................................3511.00100010000000
.....AAAAAAAAACAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAAAAAAAAAAA------AA---------------AC-----.....................................................................................................................................................................................................................................................3511.00100010000000
....AAAAAAAAAACAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAAAAAAAAAAA------AA---------------AA-----.....................................................................................................................................................................................................................................................3611.00100010000000
.......AAAAAAACAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAAAAAAAAAAA------AA---------------AA-----AAA..................................................................................................................................................................................................................................................3620.50100000100000
..................AA---------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAAAAAAAAAAA------AA---------------AA-----A....................................................................................................................................................................................................................................................23160.06101000000000
................AAAA---------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAAAAAAAAAA....................................................................................................................................................................................................................................................................................19200.05101000000000
...................A---------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAAAAAAAAAAA------AA---------------AA-----AA...................................................................................................................................................................................................................................................23200.05101000000000
droEre2
CTACGCCTAGGAG--TTTACATT--------------------------------------------------------------------------------------------------------------------------------------AGGAAATACACACAAAAAAAAACCTTTTGGCAGAGGAGCCCTTGGCGAAATACATACAT------------------GTATGCAGATACG---------------------------------------------------------------------CAATTGATATCGTATCACC---------TCAGATCGGATATACTGGTACATACATATGTAACGTTCT--ACATGCTAGATGCTTATTGTGGCTCATAAAGCTCTTCTC--------------------------------CCCTCTTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 04:14 AM