ID:

dvi_8448

 Coordinate:

scaffold_12928:1371514-1371710 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-45.4 -45.4 -45.2

Flybase annnotation

exon [dvir_GLEANR_17144:26]; CDS [Dvir\GJ16640-cds]; exon [dvir_GLEANR_17144:27]; CDS [Dvir\GJ16640-cds]; intron [Dvir\GJ16640-in]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAATCAGACCTCGCGCGTCTTCGAGGACAAGGTTTCCATCACCATATCAAGTGAGTGTCCACATTAACCTTAGGTTAGCGCAACTAGAATTAAGCTAATCTCTTATACTAACTCGTTACTGCGGCAATCGCCTCAAGGATATGCCAGCGAAATGTTGGCACGCTATGGTAGCTATTGAGGATACATTTTGGTCTATTGGCTCATGCCTAATGCTAATCATTTCTGCTGTCAATCTCTCAATCTCTAGATCAATCGCAACGCTCGCCCGCCCAGATCGTCAGTCTGCCCAGCACGGTG
**************************************************((((.((.((.((.((((...((((((((..............)))))))).............)))).)).)))).)))).....((((.((.((((((((((((((((...((.((((((((....((((........))))..)))))...))))).)))))).)))))).)))).))))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 SRR060665
9_females_carcasses_total
 SRR1106729
mixed whole adult body
 V053
head
 M028
head
 SRR060664
9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060677
Argx9_ovaries_total
 SRR060678
9x140_testes_total
 SRR1106727
larvae
 SRR1106728
larvae
 SRR1106730
embryo_16-30h
 SRR060682
9x140_0-2h_embryos_total
 M027
male body		 V116
male body		 SRR060686
Argx9_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060687
9_0-2h_embryos_total
......................GAGGACAAGGTTTCCATCACCATA........................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................AATCGCAACGCTCGCCCGCC........................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................TCGCCCGCCCAGATCGTCAGTCT............. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................CGCCCGCCCAGATCGTC.................. 17 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................TCGAGGACAAGGTTTCCATC................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.AATCAGACCTCGCGCGTCTTCGAGGACA............................................................................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................TCGCCCGCCCAGATCGTCAGTCTGCCCAGC...... 30 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CAGACCTCGCGCGTCTTCGAGGACAA........................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................CGCCCGCCCAGATCGTCAGTCT............. 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................GACAAGGTTTCCATCACCATATC......................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................AACGCTCGCCCGCCCAGATCGTCAGTCT............. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................AAATCAATCGCAACGCTCGCCCG............................. 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................ATCTATCGCAACGCTCGCC............................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CGGGTCATCGAGGACAAGGTTTT..................................................................................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................ATCGCAACGCTCGCCCGCCCAG........................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTGAGGATACATTTTGGTCTATTGGC................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........CTGGCGCGTCTTCGAGGAC............................................................................................................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AGTAAGCTAATCTCTTAAA.............................................................................................................................................................................................. 19 2 10 0.50 5 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 2 0 0
.........................................................................................GTAAGCTAATCTCTTAAA.............................................................................................................................................................................................. 18 2 20 0.40 8 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 2 1 1
........................................................................................................................................................................................................................................................................ACAGCCCAGATCGTCAGT............... 18 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................CGCCCAGATCGTAAGACTAC........... 20 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................TTAAGCTAATCTCTTAAA.............................................................................................................................................................................................. 18 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................CTAAGCTAATCTCTTAAA.............................................................................................................................................................................................. 18 2 17 0.12 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0
..........................................................................................................................................................................................................................................................................CGCCCAGATCGTAAGAC.............. 17 2 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CGCGTCTTCGAGTATATGGT........................................................................................................................................................................................................................................................................ 20 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................GGTTTCCATCACAATGTCT........................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GTTAGTCTGGAGCGCGCAGAAGCTCCTGTTCCAAAGGTAGTGGTATAGTTCACTCACAGGTGTAATTGGAATCCAATCGCGTTGATCTTAATTCGATTAGAGAATATGATTGAGCAATGACGCCGTTAGCGGAGTTCCTATACGGTCGCTTTACAACCGTGCGATACCATCGATAACTCCTATGTAAAACCAGATAACCGAGTACGGATTACGATTAGTAAAGACGACAGTTAGAGAGTTAGAGATCTAGTTAGCGTTGCGAGCGGGCGGGTCTAGCAGTCAGACGGGTCGTGCCAC
**************************************************((((.((.((.((.((((...((((((((..............)))))))).............)))).)).)))).)))).....((((.((.((((((((((((((((...((.((((((((....((((........))))..)))))...))))).)))))).)))))).)))).))))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060687
9_0-2h_embryos_total
 M047
female body
 M061
embryo
 V053
head
 V116
male body		 SRR060679
140x9_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060680
 9xArg_testes_total
 SRR060665
9_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 M027
male body		 SRR060658
140_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 V047
embryo
 M028
head
......................................................................................GTTAATTCGATTAGAGGA................................................................................................................................................................................................. 18 2 10 8.10 81 52 0 0 0 1 7 0 0 3 2 3 3 3 2 0 2 2 1 0 0 0
..................................................................TGGAATCCAATCGCGTTGATC.................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................CGGATCTAGCAGCCTGACGG.......... 20 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................GGTCTAGCAGTCAGACGC.......... 18 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GCTTAATTCGATTAGAGGA................................................................................................................................................................................................. 19 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................TGGAGAGTTAGAGTTCTGGTT............................................. 21 3 5 0.40 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................TTGTTGGAGTTGCGAGCGGGC............................. 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AGGTTAATTCGATTAGAGGA................................................................................................................................................................................................. 20 3 15 0.33 5 0 0 0 0 1 0 0 0 0 1 0 0 0 1 2 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................GGGCTGGTCTAGCAGCCTGAC............ 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................GTTGTCGTTGCGAGCGGGC............................. 19 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................GCGGGTCGAGTAGTCAGACGGT......... 22 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................CCGGTCTAGCAGTCTGAC............ 18 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CAGACGACTGTTAGAGAGG.......................................................... 19 3 12 0.17 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................CGGGTCTAGCAGCCTGAC............ 18 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................CGGGCGGGTCTAGACGTC................ 18 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ACGAGAGTTAGACAGTTA........................................................ 18 2 20 0.10 2 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GTCGAGCAGTCAGACGGGGG....... 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................CGACAGTTAGACAGTTAGG...................................................... 19 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................ACGAGAGTTAGACAGTTAG....................................................... 19 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................................................CGTTAGCGTTGCTACCGGGC............................. 20 3 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................GGAGAGTTAGAGTTCTGGTT............................................. 20 3 19 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCCAAGCGCGTCGAACTTA............................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ACGAGAGTTAGACAGTTAGG...................................................... 20 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CGAGAGTTAGATAGTTAG....................................................... 18 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:1371464-1371760 - dvi_8448 CAATCAGACCTCGCGCGTCTTCGAGGACAAGGTTTCCATCACCATATCAAGTGAGTGTCC-ACAT-T--AA-CC----TTAGGT---------TAGCGCAACTAGAATT-----------------------------------------------------AAGCT-----------------------AATCTCTTA---TACTAACTCG-TTACTGCGGCAATCG----------CCTCAAGGATATGCCAGCGAAATGTTGGCACGCTATGGTAGCTATTG------------AG---GATACATTTTGGTCTATTGGC-------------------------------TCATGCC---------------------------------------------------------------------------------------------------------------------------------TAATGC-TAAT----------------CATTTCTGCTGTCAATCT----------------------CTCAATCTCTAGATCAATCGCAACGCTCGCCCGCCCAGATCGTCAGTCTGCCCAGCACGGTG
droMoj3 scaffold_6473:13636736-13637055 + CAACCAGACCTCTCGCGCCTACGAGGACATGGTCTCCATAACCATAACACGTAAGTCTCTTGCACACTATTGCTTTTCTCAAGT---------CG-G--------------------GATAAA---C------------------------AATCTA---------------------------------------AAAAGTTAACTAATTT-GACATGCGGCATTTG----------TGTAAAGGATATGCCAAAGAAATGCTGGCACGCTATGGTAGCTATTG------------AG---GATTCAA---------------------------------------------------------------------------------TTGATTTCCTTTTCTTAATATCATCCTTACTAATATTCTCCCTTATCTCGTTC-----------------------------------------------T--------------------------CGTTCTCCCTCTCGTT---CTCC--------------------CTCTCGCAGCGCATTCCCAACGCTCGCGCGCTCAGATTGTCAATCTGCCGCAGACGGTG
droGri2 scaffold_15203:8359535-8359727 + CAACCAGACTCTGCGCGTCTTCAAGGATGAGGTCTCCATCACCATATCAAGTAAGTGCAC-GTAT-T--CC-AG-------CTA---------TG----------------------CAAA------AGCAAAAAA-CT----------------T------AAACT-----------------------AATCTTT---CTAAACAAATT--CAAATGCGGCATTCG----------CCTCAAGGATATTCTGAAGAAATGTTGGCTCGCTATGGTAGCTATTG-----------------------------AATACCTATTTTCCTCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:12086428-12086746 - TGCTGAAACCTTTAGAGAATACAAGGACACTGTCTCCATTACCATAACAGGTGAGTGTAA-GATA-C--TT-TT--------TT------TAGAGGC--AAC-----------------TC-T--------------TA-------GTTT----ACTCCTTTTACCTGATCTCTTTTGACATGCCTGCATACAAAAAAAAAAC---------------------AAAA----------TA-TAAGAATATGCCATGGAAATGTTGGCTCGCTACGGTATCTATCTATATATA----------------------------A-------------ACGAATCCAACT--CTAGCCTCATGTT----------------------------------------------------------------------------------TGC---------------------------------------------------TAATCCTTAAACA--------ATTTTATCATTTGATTC--------------------TTTGATTTCTATAGAAATAGAACAAGAGTCGCCCGCACGCATTGTGTATTTGCCCAGTTATGTG
dp5 XL_group3a:2052108-2052416 - CAACGAGACAATGCACGTGTACCAGGACACCGTCTCCGTCACCATATCACGTGAGTAAAC-CGCT-T--CC-CA-------GAG---------TGGCGCTGCCCCCTCT-----------------------------------------------------TTGCT-----------------------AATCATTGA---CACTTCTCTG-ACACTGCGGCTCTAC----------CT-AAAGGATATGCCAAGGAAATGTTGGCTCGCTACGGTATCTAAGAATCTCCTC-----------------------------------------AAG----------------------AA----------------------------------------------------------------------------------TGCCCCAAAAATCCCCCATAAAATCC-----TTCAATTGATTTGAGACGATAGTGAC--------------------------TTTCTGAT--TTCC--------------------CTTTTGCAGAGGAAGGCCAGCGCTCGCCGGCCCGAATTGTGGACCTGCCCAACCATGTT
droPer2 scaffold_11:2624023-2624331 + dpe_674 CAATGAGACAATGCACGTGTACCAGGACACCGTCTCCGTCACCATATCACGTGAGTAAAC-CGCT-T--CC-CA-------GAG---------TGGCGCTGCCCCCTCT-----------------------------------------------------TTGCT-----------------------AATCATTGA---CACTTCTTTG-ACACTGCGGCTCTAC----------CT-AAAGGATATGCCAAGGAAATGTTGGCTCGCTACGGTATCTAAGAATCTCCTC-----------------------------------------AAG----------------------AA----------------------------------------------------------------------------------TGCCCCAAAAATCCCCCATAAAATCC-----TTCAATTGATTTGAGACGATAGTGAC--------------------------TTTCTGAT--TTCC--------------------CTTTTGCAGAGGAAGGCCAGCGCTCGCCGGCCCGAATTGTGGACCTGCCCAACCATGTT
droAna3 scaffold_12929:2288218-2288531 - dan_822 CAATGAGACTAGCCACGTCTTCGAGGACACCGTTTCCATCACCATTTCCAGTAAGTCTAC-TACC-T--CA-GA-------TCC---------TAGATCATCTCCTTCTTTAAAATAGAAAAG--------------AA------------------------AACT-----------------------GAACTCTTA---AACCCTTTTT-AAAATGCTGCCTTTTATAAAAAAAAAA-AAAGGATATGCCAAGGCCATGCTGGCAAGATACGGTACAGAATAG-ATCCTC-----------------------------------------AAG----------------------C-----------------------------------------------------------------------------------------------------------------------TCCA-------GGATATCCGCTTTCCAGTTAATAATATT----------------------------TTAAAATAATCTTCCCCCCACAGCTCATGCCCAGCGCTCTCCGGCCACGATTGTCAGCCTGCCCCAGACGGTG
droBip1 scf7180000396434:282268-282555 - CAACGAGACTGCACGCGTCTTCGAGGACACCGTTTCCATCACCATTTCCAGTAAGTCTTT-CAAC-T--TA-GA-------TCCTTTTTTTTGAA-------TCCTTCTTT------AAAA-T-------------------------------TCA---------------------------------------CCTTGAAACCTTTTTA-AAAATGCGGCATTT--------------AAAGGATATGCCAAAGCCATGTTGGCTAGATACGGTATAACATAG-ATC------------CCTATGGCTGAGGATATGCATTATCCCTC--TAAT----------------------GAT----------------------------------------------------------------------------------------------------------------------------------------AC-----------------TATATTTTCTC------------------------------CCCCCACACAGCCCACGACCAACGCTCTCCGGCCCAGGTTGTTAGCCTGCCCCAGACCGTG
droKik1 scf7180000302258:517385-517560 - CAATGACACCGAGAATCTGTTTGAGGATCGCATCTCCATTACCATTACCAGTGAGTTTTA-GCAT-TTATTGTTTTCTTTAAT------------------------TT----------------------------------------------------------------TTTTAATCTGTAAGATTAACAATTAAAAATAATTTATAA-AAATGCCTACGCTTA----------AC-GAAGGATATGCCAAGGAAATGCTGGCACGCTATGGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453927:178662-179032 - CAACGAGACCGCTCGCGTCTTCAAGGACCATGTCTCGATCACCATATCACGTGAGTATTA-GTTT-T--CT-AA-------CCC---------TT----------------------AACA------TACCAATAA-GT---------------------------------------------------AATCATAATCACGACCTTT----TAAATGCCGCATATA----------TC-AAAGGATATGCCAAGGAAATGCTGGCACGATACGGTACTTAAAG-----------------TATATGATTTTA-------------TGTTAACAAGAG-CCCACT--GTAGG------CACCTTAAATGTTTCCAAGGTGTAGAAATTATTGTTGTACTATTCTTTTTGATAT--------TTATTTTATTTAAACACATTT-----------------------------------------------T--------------------------GAA---------TTTTCTA---CTTTTTTTGAACCCCAAACACCACCTATAGAGGATGGCCAGCGCTCTCCGGCTCAGATAGTCAATTTGCCGAACCACGTG
droEle1 scf7180000491011:694691-694861 - CAAGGAAACCAACCGCGTCTTCAAGGATTCCGTCTCCATCACCATAACCCGTGAGTATTT-GTT-----CT-GT-------ACC---------TA----------------------ATTG------TATCCATAC-TTTATCGTTCCCCTAATCTA---------------------------------------AAA--------AACAA-AAAATGCTGCATTAT----------TC-AAAGGATATGCCCAGGAAATGCTGGCTCGCTATGGTATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779506:485192-485367 - CACCGCAGACAATCGCATCTTCAAGGACTCTGTCTCCATTACCATAACTCGTGAGTATTG-GTTA-T--CT-GT-------CCC---------TT----------------------CATG------AACCCATTC-CT---------------------------------------------------AACCGTACTCATAATCTCATAC-AAATTGCGGCATTTA----------TC-AAAGGATATGCCCAGGAAATGCTGACACGCTACGGTATTATACATTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301760:4788208-4788563 + CAACGAAACCGGACGCATCTTCACGGATAACATCGTCATCACTGTTACCCGTGAGTACTG-GGGG-T--CC-AT-------ACC---------TA----------------------GAAA------TACCAATAG-CT---------------------------------------------------AATCGTATTTATAATCCCATAA-AAATTGCGGCATTTA----------TC-GAAGGTTATGCCGAGGAAATGTTGGCACGATACGGTACTTAAAATTCCCAA-AATTGA---TTTATGTTTTCA-------------TTTTAATAACTA-GTTATTTCTTTGG------TACCTGC----------------------------------------AATATTATCCCTATGA--------------------------------------------------------ATATATAAAT-CC--------------------------TAAGTTGACGTATTTCATC---TTTTTCTTCTCTCCACAATTTAACCCTTAGCGACGGACCAACGCTCAGCGGCGGAGATTGTGGACTTGCCGAGCGAGGTG
droTak1 scf7180000415151:429114-429444 + CAACGAGACCGGCCACAGCTTTACGGACCACGTCTCCATCACTGTTTCCCGTGAGTACCG-GTTA-C--CT-ATTCCGTTTAC------------------------CTAT------AAAA-T---CTACCAAATAGCT---------------------------------------------------AATAACACTTGTAATCTCACAAAAAATTGCGGCATTTA----------TC-AAAGGATATGCCCAGGAAATGCTGGCACGATACGGTACTTGAAATTTCCCA-GCAAAATTACATATTATATT-TAGA-AGATTATATTACATTTGG----------------------CA---------------------------------------------------------------------------------------------------------------------------------TGATAAAAAC-----------------CATGTTT-------------TCT---CTTTTACCAAAAAATGCAATCCTCAGAGGAGGATCAACGCTCGCCGGCTCACATTGTGGATTTGCCCAACGACGTG
droEug1 scf7180000409277:63339-63499 - CAACGAAACCACACACGTCTTCAAGGACACCGTGTCCATCACCATTTCCCGTGAGTGCTG-GTTA-T--CT-GT-------CCT---------TA----------------------GAAA-T---GTATCTTA--------------------------------------------------------------ACTTATAATCTAATAC-GAAATGCGGCATTTG----------TC-AAAGGATATGCCCAGGAAATGCTGGCGCGCTATGGTATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chrX:2378073-2378415 - CAATGAAACCGCCAGCGTGTTTAAGGACACTGTATCCATTACCATAACCAGTAAGTAATG-CTCA-T--AT-GT-------CCG---------CA----------------------AATG-T---GTATCAGTGCATT---------------------------------------------------AATCATTCGCTTAACCTTATAT-AAATTGCGGCATTTA----------TC-AAAGGATATGCCCAGGAAATGCTGGCACGCTACGGTATTTTACATTTTTAA-ACAAAA---GATATGATTTTGTATATGAATATAACCACATTAAG----------------------CAC---------------------------------------------------------------------------------------------------------AC-----CATTATCTATGAAA-GT--------------------------CATATTGACGCTCAGTATC---ATTTTCTTTAACTTAAAATGTACCCCACAGAGAAAGACCAGCTCTCACCGGCTGAGATTGTGAATTTGCCGAGCCACGTT
droSim2 x:2192374-2192715 - dsi_11479 CAATGAAACCGCCAGCGTGTTTAAGGACACTGTATCCATTACCATAACCAGTAAGTAATG-CTCA-T--CT-GT-------CCG---------CA----------------------AATG-T---GTACCAATGCATT---------------------------------------------------AATCATTCGCTTAACCTTATAC-AAATTGCCGCATTTA----------TC-AAAGGATATGCCCAGGAAATGCTGGCACGCTACGGTATTTTACATTTTTAA-ACATAA---GATATGATTTTGTATATGGATTTTACCTCATTAAG----------------------CCC----------------------------------------------------------------------------------------------------------C-----CAATATCTATGAAA-GC--------------------------CGTATTGACGCTCAGTATC---CTTTTCTTAAACTTAAAATGTAACCCACAGAGAAGGACCAGCTCTCACCGGCTGAGATTGTGAATTTACCGAGCCACGTT
droSec2 scaffold_10:2153782-2154108 - CAATGAAACCGCCAGCGTGTTTAAGGACACCGTATCCATTACCATAACCAGTAAGTAATG-CTCA-T--CT-GT-------CCG---------CA----------------------AATG-T---GTACCAATGCATT---------------------------------------------------AATCATTCGCTTAACCTTATAC-AAATTGCGGCATTTA----------TC-AAAGGATATGCCCAGGAAATGCTGGCACGCTACGGTATTTTACATTTTTAA-ACATAA---GATATGATTTTGTATATGGATTTTACCTCATTAAG----------------------CAT---------------------------------------------------------------------------------------------------------A----------------------C--------------------------CATATTGACGCTCAGTATC---CTTTTATTAAACTTAAAATGTAACCCACAGAGAAGGACCAGCTCTCACCGGCTGAGATTGTGAATTTACCGAGCCACGTT
droYak3 X:5967467-5967790 + CAACGAAACTGCCATCGTGTCTAAGGACTCTGTATCCATTACCATAACCAGTAAGTAATG-CTTA-A--CA----------AAT---------TAGCATTAGCA-------------AATA-TCAAATGCCAATAC-CT---------------------------------------------------AATCAATCGCTTAACCTTGTAC-CAATTGCGGCGTTTA----------TC-AAAGGATATGCCCAGGAAATGCTGGCACGCTACGGTATTTTACATTTTTAACACAAAG---AATAAGATT-------------TAACCTCACTTAA----------------------CAC---------------------------------------------------------------------------------------------------------CC-----TATAATCTATGAAACTTA--------------------------ATATTGACGCACGGTAT--------------------ATTATACCCTACAGAGAAAGACCAGCTTTCACCGGCCGAGATTGTGAATTTGCCGAGCCAAGTG
droEre2 scaffold_4644:2327362-2327719 - CAACGAAACGGCCAGAGTGTATACGGACTCTGTATCCATTACCATATCCAGTAAGTAATG-CCTA-TATCT-GT-------CCG---------CA----------------------AATG-T---TTGCCAATACCTA--------------------------------------------TATCGCTAACCAATCGCTTAACCTTATAC-AAATTGCGGCATTTA----------TC-AAAGGATATGCCCAGGAAATGCTGGCACGCTACGGTATTTAACATTTTTAA-ACAAAT---TATATGAATTTGTATTACGATTTTTCCACATAAAG----------------------CAC---------------------------------------------------------------------------------------------------------ATCTATGCATAATCTATGTAAACC--------------------------CATATTGACGCACAGTATC---CTTTGCTTTAACCCAAAATGTACCCCGCAGAGAAAGACCAGCTTTCACCGGCTGAGATTGTGAATTTGCCGAGCCACGTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAATCAGACCTCGCGCGTCTTCGAGGACAAGGTTTCCATCACCATATCAAGTGAGTGTCC-ACAT-T--AA-CC----TTAGGT---------TAGCGCAACTAGAATT-----------------------------------------------------AAGCT-----------------------AATCTCTTA---TACTAACTCG-TTACTGCGGCAATCG----------CCTCAAGGATATGCCAGCGAAATGTTGGCACGCTATGGTAGCTATTG------------AG---GATACATTTTGGTCTATTGGC-------------------------------TCATGCC---------------------------------------------------------------------------------------------------------------------------------TAATGC-TAAT----------------CATTTCTGCTGTCAATCT----------------------CTCAATCTCTAGATCAATCGCAACGCTCGCCCGCCCAGATCGTCAGTCTGCCCAGCACGGTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................GAGGACAAGGTTTCCATCACCATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCAACGCTCGCCCGCC...........................2011.001000000000000000100000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCCGCCCAGATCGTCAGTCT.............2311.001000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCGCCCAGATCGTC..................1711.001000000000000000000000000000000000000000000000000000000010000000
....................TCGAGGACAAGGTTTCCATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
.AATCAGACCTCGCGCGTCTTCGAGGACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCCGCCCAGATCGTCAGTCTGCCCAGC......3011.001000000000000000000000000000000000000000000000000000000000100000
....CAGACCTCGCGCGTCTTCGAGGACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCGCCCAGATCGTCAGTCT.............2211.001000000000000000000000010000000000000000000000000000000000000000
.........................GACAAGGTTTCCATCACCATATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCTCGCCCGCCCAGATCGTCAGTCT.............2811.001000000000000000000000000000000000000000000000000000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCAACGCTCGCCCGCCCAG........................2211.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TTG------------AG---GATACATTTTGGTCTATTGGC-------------------------------.........................................................................................................................................................................................................................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
droMoj3
CAACCAGACCTCTCGCGCCTACGAGGACATGGTCTCCATAACCATAACACGTAAGTCTCTTGCACACTATTGCTTTTCTCAAGT---------CG-G--------------------GATAAA---C------------------------AATCTA---------------------------------------AAAAGTTAACTAATTT-GACATGCGGCATTTG----------TGTAAAGGATATGCCAAAGAAATGCTGGCACGCTATGGTAGCTATTG------------AG---GATTCAA---------------------------------------------------------------------------------TTGATTTCCTTTTCTTAATATCATCCTTACTAATATTCTCCCTTATCTCGTTC-----------------------------------------------T--------------------------CGTTCTCCCTCTCGTT---CTCC--------------------CTCTCGCAGCGCATTCCCAACGCTCGCGCGCTCAGATTGTCAATCTGCCGCAGACGGTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....CAGACCTCTCGCGCCTACGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
CAACCAGACTCTGCGCGTCTTCAAGGATGAGGTCTCCATCACCATATCAAGTAAGTGCAC-GTAT-T--CC-AG-------CTA---------TG----------------------CAAA------AGCAAAAAA-CT----------------T------AAACT-----------------------AATCTTT---CTAAACAAATT--CAAATGCGGCATTCG----------CCTCAAGGATATTCTGAAGAAATGTTGGCTCGCTATGGTAGCTATTG-----------------------------AATACCTATTTTCCTCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...CCAGACTCTGCGCGTCTTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
............GCGCGTCTTCAAGGATGAGGTCTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101
CAACCAGACTCTGCGCGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
.....AGACTCTGCGCGTCTTCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
...............CGTCTTCAAGGATGAGGTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
............................GAGGTCTCCATCACCATATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
...CCAGACTCTGCGCGTCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
......................AAGGATGAGGTCTCCATCACCATATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101
......................AAGGATGAGGTCTCCATCACCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
..ACCAGACTCTGCGCGTCTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
.....................CAAGGATGAGGTCTCCATCACCATATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110
......GACTCTGCGCGTCTTCAAGGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101
........CTCTGCGCGTCTTCAAGGATGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101
.......................AGGATGAGGTCTCCATCACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
...................TTCAAGGATGAGGTCTCCATCACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101
..ACCAGACTCTGCGCGTCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
.....................CAAGGATGAGGTCTCCATCACCATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110
..........CTGCGCGTCTTCAAGGATGAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101
droWil2
TGCTGAAACCTTTAGAGAATACAAGGACACTGTCTCCATTACCATAACAGGTGAGTGTAA-GATA-C--TT-TT--------TT------TAGAGGC--AAC-----------------TC-T--------------TA-------GTTT----ACTCCTTTTACCTGATCTCTTTTGACATGCCTGCATACAAAAAAAAAAC---------------------AAAA----------TA-TAAGAATATGCCATGGAAATGTTGGCTCGCTACGGTATCTATCTATATATA----------------------------A-------------ACGAATCCAACT--CTAGCCTCATGTT----------------------------------------------------------------------------------TGC---------------------------------------------------TAATCCTTAAACA--------ATTTTATCATTTGATTC--------------------TTTGATTTCTATAGAAATAGAACAAGAGTCGCCCGCACGCATTGTGTATTTGCCCAGTTATGTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGAGTCGCCCGCACGC........................2011.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCCCGCACGCATTGTGTATT..............2411.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACAAGAGTCGCCCGCACGCATTGT...................2711.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAACAAGAGTCGCCCG.............................2011.00110000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAACAAGAGTCGCCC..............................1811.00110000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACAAGAGTCGCCCGCACGC........................2211.00100010
..............GAGAATACAAGGACACTGTCTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.GCTGAAACCTTTAGAGAATACAAGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATTGTGTATTTGCCCAGTTATGT.2611.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGTATTTGCCCAGTTATGT.2311.00100100
..................ATACAAGGACACTGTCTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATTTGCCCAGTTATGT.2011.00100010
.............AGAGAATACAAGGACACTGTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
..................ATACAAGGACACTGTCTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.........CTTTAGAGAATACAAGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGAACAAGAGTCGCCCGCACG.........................2511.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGTCGCCCGCACGCATTG....................2111.00100100
dp5
CAACGAGACAATGCACGTGTACCAGGACACCGTCTCCGTCACCATATCACGTGAGTAAAC-CGCT-T--CC-CA-------GAG---------TGGCGCTGCCCCCTCT-----------------------------------------------------TTGCT-----------------------AATCATTGA---CACTTCTCTG-ACACTGCGGCTCTAC----------CT-AAAGGATATGCCAAGGAAATGTTGGCTCGCTACGGTATCTAAGAATCTCCTC-----------------------------------------AAG----------------------AA----------------------------------------------------------------------------------TGCCCCAAAAATCCCCCATAAAATCC-----TTCAATTGATTTGAGACGATAGTGAC--------------------------TTTCTGAT--TTCC--------------------CTTTTGCAGAGGAAGGCCAGCGCTCGCCGGCCCGAATTGTGGACCTGCCCAACCATGTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........ATGCACGTGTACCAGGACACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000020000
........CAATGCACGTGTACCAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTCGCCGGCCCGAATTGTGGAC...............2411.0010010000000
........CAATGCACGTGTACCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGCGCTCGCCGGCCCGAAT......................2311.0010100000000
...........................CACCGTCTCCGTCACCATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
droPer2
CAATGAGACAATGCACGTGTACCAGGACACCGTCTCCGTCACCATATCACGTGAGTAAAC-CGCT-T--CC-CA-------GAG---------TGGCGCTGCCCCCTCT-----------------------------------------------------TTGCT-----------------------AATCATTGA---CACTTCTTTG-ACACTGCGGCTCTAC----------CT-AAAGGATATGCCAAGGAAATGTTGGCTCGCTACGGTATCTAAGAATCTCCTC-----------------------------------------AAG----------------------AA----------------------------------------------------------------------------------TGCCCCAAAAATCCCCCATAAAATCC-----TTCAATTGATTTGAGACGATAGTGAC--------------------------TTTCTGAT--TTCC--------------------CTTTTGCAGAGGAAGGCCAGCGCTCGCCGGCCCGAATTGTGGACCTGCCCAACCATGTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGAATTGTGGACCTGCCCAACC.....2512.002200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCGAATTGTGGACCTGCCC.........2211.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGTGGACCTGCCCAACCATGT.2511.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAATTGTGGACCTGCCC.........1911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTCGCCGGCCCGAATTGTGGACCT.............2611.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCGAATTGTGGACCTGCC..........2111.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGGACCTGCCCAACCATGT.2311.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGCCCGAATTGTGGACCG.............2211.001100000
.........AATGCACGTGTACCAGGACACCGTCTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGCCCGAATTGTGGACCT.............2211.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGCCCGAATTGTGGACCTG............2311.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAATTGTGGACCTGCC..........1811.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTCGCCGGCCCGAATTGTGGACCTGC...........2811.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGAATTGTGGACCTGCCCAACC.....2411.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGAATTGTGGACCTGCC..........2011.001100000
droAna3
CAATGAGACTAGCCACGTCTTCGAGGACACCGTTTCCATCACCATTTCCAGTAAGTCTAC-TACC-T--CA-GA-------TCC---------TAGATCATCTCCTTCTTTAAAATAGAAAAG--------------AA------------------------AACT-----------------------GAACTCTTA---AACCCTTTTT-AAAATGCTGCCTTTTATAAAAAAAAAA-AAAGGATATGCCAAGGCCATGCTGGCAAGATACGGTACAGAATAG-ATCCTC-----------------------------------------AAG----------------------C-----------------------------------------------------------------------------------------------------------------------TCCA-------GGATATCCGCTTTCCAGTTAATAATATT----------------------------TTAAAATAATCTTCCCCCCACAGCTCATGCCCAGCGCTCTCCGGCCACGATTGTCAGCCTGCCCCAGACGGTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........TAGCCACGTCTTCGAGGACACCGTTTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGATTGTCAGCCTGCCC.........1911.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCCAGCGCTCTCCGGC............................1911.001100000
..........AGCCACGTCTTCGAGGACACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGCTCTCCGGCCACGATTGTCAGCC..............2811.001000001
..................CTTCGAGGACACCGTTTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCAGCCTGCCCCAGAC....1911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACGATTGTCAGCCTGCCCCAG......2311.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTGTCAGCCTGCCCCAGAC....2211.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGATTGTCAGCCTGCCCC........2011.001001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAGCCTGCCCCAGACGGT.2111.001001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCACGATTGTCAGCCTGCCCCAGAC....2711.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTCAGCCTGCCCCAGAC....2111.001010000
........CTAGCCACGTCTTCGAGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droBip1
CAACGAGACTGCACGCGTCTTCGAGGACACCGTTTCCATCACCATTTCCAGTAAGTCTTT-CAAC-T--TA-GA-------TCCTTTTTTTTGAA-------TCCTTCTTT------AAAA-T-------------------------------TCA---------------------------------------CCTTGAAACCTTTTTA-AAAATGCGGCATTT--------------AAAGGATATGCCAAAGCCATGTTGGCTAGATACGGTATAACATAG-ATC------------CCTATGGCTGAGGATATGCATTATCCCTC--TAAT----------------------GAT----------------------------------------------------------------------------------------------------------------------------------------AC-----------------TATATTTTCTC------------------------------CCCCCACACAGCCCACGACCAACGCTCTCCGGCCCAGGTTGTTAGCCTGCCCCAGACCGTGSizeHit CountTotal NormTotal
No Reads
droKik1
CAATGACACCGAGAATCTGTTTGAGGATCGCATCTCCATTACCATTACCAGTGAGTTTTA-GCAT-TTATTGTTTTCTTTAAT------------------------TT----------------------------------------------------------------TTTTAATCTGTAAGATTAACAATTAAAAATAATTTATAA-AAATGCCTACGCTTA----------AC-GAAGGATATGCCAAGGAAATGCTGGCACGCTATGGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CAACGAGACCGCTCGCGTCTTCAAGGACCATGTCTCGATCACCATATCACGTGAGTATTA-GTTT-T--CT-AA-------CCC---------TT----------------------AACA------TACCAATAA-GT---------------------------------------------------AATCATAATCACGACCTTT----TAAATGCCGCATATA----------TC-AAAGGATATGCCAAGGAAATGCTGGCACGATACGGTACTTAAAG-----------------TATATGATTTTA-------------TGTTAACAAGAG-CCCACT--GTAGG------CACCTTAAATGTTTCCAAGGTGTAGAAATTATTGTTGTACTATTCTTTTTGATAT--------TTATTTTATTTAAACACATTT-----------------------------------------------T--------------------------GAA---------TTTTCTA---CTTTTTTTGAACCCCAAACACCACCTATAGAGGATGGCCAGCGCTCTCCGGCTCAGATAGTCAATTTGCCGAACCACGTGSizeHit CountTotal NormTotal
No Reads
droEle1
CAAGGAAACCAACCGCGTCTTCAAGGATTCCGTCTCCATCACCATAACCCGTGAGTATTT-GTT-----CT-GT-------ACC---------TA----------------------ATTG------TATCCATAC-TTTATCGTTCCCCTAATCTA---------------------------------------AAA--------AACAA-AAAATGCTGCATTAT----------TC-AAAGGATATGCCCAGGAAATGCTGGCTCGCTATGGTATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CACCGCAGACAATCGCATCTTCAAGGACTCTGTCTCCATTACCATAACTCGTGAGTATTG-GTTA-T--CT-GT-------CCC---------TT----------------------CATG------AACCCATTC-CT---------------------------------------------------AACCGTACTCATAATCTCATAC-AAATTGCGGCATTTA----------TC-AAAGGATATGCCCAGGAAATGCTGACACGCTACGGTATTATACATTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CAACGAAACCGGACGCATCTTCACGGATAACATCGTCATCACTGTTACCCGTGAGTACTG-GGGG-T--CC-AT-------ACC---------TA----------------------GAAA------TACCAATAG-CT---------------------------------------------------AATCGTATTTATAATCCCATAA-AAATTGCGGCATTTA----------TC-GAAGGTTATGCCGAGGAAATGTTGGCACGATACGGTACTTAAAATTCCCAA-AATTGA---TTTATGTTTTCA-------------TTTTAATAACTA-GTTATTTCTTTGG------TACCTGC----------------------------------------AATATTATCCCTATGA--------------------------------------------------------ATATATAAAT-CC--------------------------TAAGTTGACGTATTTCATC---TTTTTCTTCTCTCCACAATTTAACCCTTAGCGACGGACCAACGCTCAGCGGCGGAGATTGTGGACTTGCCGAGCGAGGTGSizeHit CountTotal NormTotal
No Reads
droTak1
CAACGAGACCGGCCACAGCTTTACGGACCACGTCTCCATCACTGTTTCCCGTGAGTACCG-GTTA-C--CT-ATTCCGTTTAC------------------------CTAT------AAAA-T---CTACCAAATAGCT---------------------------------------------------AATAACACTTGTAATCTCACAAAAAATTGCGGCATTTA----------TC-AAAGGATATGCCCAGGAAATGCTGGCACGATACGGTACTTGAAATTTCCCA-GCAAAATTACATATTATATT-TAGA-AGATTATATTACATTTGG----------------------CA---------------------------------------------------------------------------------------------------------------------------------TGATAAAAAC-----------------CATGTTT-------------TCT---CTTTTACCAAAAAATGCAATCCTCAGAGGAGGATCAACGCTCGCCGGCTCACATTGTGGATTTGCCCAACGACGTGSizeHit CountTotal NormTotal
No Reads
droEug1
CAACGAAACCACACACGTCTTCAAGGACACCGTGTCCATCACCATTTCCCGTGAGTGCTG-GTTA-T--CT-GT-------CCT---------TA----------------------GAAA-T---GTATCTTA--------------------------------------------------------------ACTTATAATCTAATAC-GAAATGCGGCATTTG----------TC-AAAGGATATGCCCAGGAAATGCTGGCGCGCTATGGTATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CAATGAAACCGCCAGCGTGTTTAAGGACACTGTATCCATTACCATAACCAGTAAGTAATG-CTCA-T--AT-GT-------CCG---------CA----------------------AATG-T---GTATCAGTGCATT---------------------------------------------------AATCATTCGCTTAACCTTATAT-AAATTGCGGCATTTA----------TC-AAAGGATATGCCCAGGAAATGCTGGCACGCTACGGTATTTTACATTTTTAA-ACAAAA---GATATGATTTTGTATATGAATATAACCACATTAAG----------------------CAC---------------------------------------------------------------------------------------------------------AC-----CATTATCTATGAAA-GT--------------------------CATATTGACGCTCAGTATC---ATTTTCTTTAACTTAAAATGTACCCCACAGAGAAAGACCAGCTCTCACCGGCTGAGATTGTGAATTTGCCGAGCCACGTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATTGTGAATTTGCCGAGCCACGT.27118.00180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001400000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000001012600000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGATTGTGAATTTGCCGA........2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAA-GT--------------------------CATATTGACGAGT.........................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100100000000100000000000000000000000000000000000000000000
.........CGCCAGCGTGTTTAAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........GCCAGCGTGTTTAAGGACACTGTATCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATTGTGAATTTGCCGAGCCA....2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATTGTGAATTTGCCGAGCCACG..2613.0030000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAGCTCTCACCGGCTGAGATTGT...................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ACACTGTATCCATTACCATAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TTTAAGGACACTGTATCCATTACCATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATTGTGAATTTGCCGAGC......2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTCACCGGCTGAGATTG....................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGATTGTGAATTTGCCGAGC......2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATTGTGAATTTGCCG.........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TGTTTAAGGACACTGTATCCATTACCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CAGCGTGTTTAAGGACACTGTATCCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCGGCTGAGATTGTGA.................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCACCGGCTGAGATTGTGAATTTGC...........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCACCGGCTGAGATTGTGAATTT.............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGATTGTGAATTTGCC..........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCTCTCACCGGCTGAGATTGTGAAT...............2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCGGCTGAGATTGTGAATTTGC...........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....GAAACCGCCAGCGTGTTTAAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.AATGAAACCGCCAGCGTGTTTAAGGAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ACCGCCAGCGTGTTTAAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCTCACCGGCTGAGATTGT...................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACCGGCTGAGATTGTGA.................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
..............GCGTGTTTAAGGACACTGTATCCATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATTGTGAATTTGCCGAGCCAC...2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTGAATTTGCCGAGCCACGTT2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....GAAACCGCCAGCGTGTTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CGTGTTTAAGGACACTGTATCCATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCTCTCACCGGCTGAGAT......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTCTCACCGGCTGAGATTGTA..................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGGCTGAGATTGTGAATTTGCCGA........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCACCGGCTGAGATTGTGAATT..............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCACAGAGAAAGACCAGCTCTCACCGGC............................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GCGTGTTTAAGGACACTGTATCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TAAGGACACTGTATCCATTACCATAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAGCTCTCACCGGCTGAGGG......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CAATGAAACCGCCAGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TAAGGACACTGTATCCATTACCATAACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAATTTGCCGAGCCAC...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCACCGGCTGAGATTGTGAATTTGC...........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAGCTCTCACCGGCTGAGATTGTG..................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACCAGCTCTCACCGGC............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................CAC---------------------------------------------------------------------------------------------------------AC-----CATTATCTATGAAA-GT--------------------------......................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCACCGGCTGAGATTGTGAATTTG............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................TTTA----------TC-AAAGGATATGCCCAGGAAAT......................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGACCAGCTCTCACCGG.............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AACCGCCAGCGTGTTTAAGGACACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...TGAAACCGCCAGCGTGTTTAAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGACCAGCTCTCACCGGCTGAGA.......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATTGTGAATTTGCCG.........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC---ATTTTCTTTAACTTAAAATGTACC........................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGACCAGCTCTCACCGGCTGAGAT......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAATTTGCCGAGCCACG..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........GCCAGCGTGTTTAAGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
...TGAAACCGCCAGCGTGTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TTAAGGACACTGTATCCATTACCAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CAGCGTGTTTAAGGACACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAA-GT--------------------------CATATTGACGGGT.........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTCACCGGCTGAGATTGTG..................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CCGCCAGCGTGTTTAAGGACACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCTCACCGGCTGAGATTGTGAATTT.............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................ATCCATTACCATAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CAATGAAACCGCCAGCGTGTTTAAGGACACTGTATCCATTACCATAACCAGTAAGTAATG-CTCA-T--CT-GT-------CCG---------CA----------------------AATG-T---GTACCAATGCATT---------------------------------------------------AATCATTCGCTTAACCTTATAC-AAATTGCCGCATTTA----------TC-AAAGGATATGCCCAGGAAATGCTGGCACGCTACGGTATTTTACATTTTTAA-ACATAA---GATATGATTTTGTATATGGATTTTACCTCATTAAG----------------------CCC----------------------------------------------------------------------------------------------------------C-----CAATATCTATGAAA-GC--------------------------CGTATTGACGCTCAGTATC---CTTTTCTTAAACTTAAAATGTAACCCACAGAGAAGGACCAGCTCTCACCGGCTGAGATTGTGAATTTACCGAGCCACGTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATTGTGAATTTACCGAGCCACGT.27116.0016000000115000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATTGTGAATTTACCGAGCCACGTT2815.00500000023000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGATTGTGAATTTACC..........1912.00200200000000000000
..........GCCAGCGTGTTTAAGGACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGATTGTGAATTTACCGAGCCACG..2712.00200200000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGACCAGCTCTCACCGGCT...........................2112.00200200000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGAGATTGTGAATTTACCGAGCC.....2612.00200000000000002000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTGAGATTGTGAATTTACCA.........2311.00110000000000000000
.........CGCCAGCGTGTTTAAGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
...TGAAACCGCCAGCGTGTTTAAGGACAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGATTGTGAATTTACC..........2011.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATTGTGAATTTACCGAGCCACG..2611.00100000010000000000
......................AAGGACACTGTATCCATTACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGATTGTGAATTTACCG.........2111.00100100000000000000
..................GTTTAAGGACACTGTATCCATTACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
....................TTAAGGACACTGTATCCATTACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCTGAGATTGTGAATTTACCGAGC......2711.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGGCTGAGATTGTGAATTTACC..........2511.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATTGTGAATTTACCGAGCCACG..2511.00100100000000000000
droSec2
CAATGAAACCGCCAGCGTGTTTAAGGACACCGTATCCATTACCATAACCAGTAAGTAATG-CTCA-T--CT-GT-------CCG---------CA----------------------AATG-T---GTACCAATGCATT---------------------------------------------------AATCATTCGCTTAACCTTATAC-AAATTGCGGCATTTA----------TC-AAAGGATATGCCCAGGAAATGCTGGCACGCTACGGTATTTTACATTTTTAA-ACATAA---GATATGATTTTGTATATGGATTTTACCTCATTAAG----------------------CAT---------------------------------------------------------------------------------------------------------A----------------------C--------------------------CATATTGACGCTCAGTATC---CTTTTATTAAACTTAAAATGTAACCCACAGAGAAGGACCAGCTCTCACCGGCTGAGATTGTGAATTTACCGAGCCACGTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....AAACCGCCAGCGTGTTTAAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020020
........CCGCCAGCGTGTTTAAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
............CAGCGTGTTTAAGGACACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGACCAGCTCTCACCGGC............................2011.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATTGTGAATTTACCG.........1911.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACCGAGCCACGT.1811.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATTGTGAATTTACCGAGC......2211.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGACCAGCTCTCACC...............................1911.0010001
droYak3
CAACGAAACTGCCATCGTGTCTAAGGACTCTGTATCCATTACCATAACCAGTAAGTAATG-CTTA-A--CA----------AAT---------TAGCATTAGCA-------------AATA-TCAAATGCCAATAC-CT---------------------------------------------------AATCAATCGCTTAACCTTGTAC-CAATTGCGGCGTTTA----------TC-AAAGGATATGCCCAGGAAATGCTGGCACGCTACGGTATTTTACATTTTTAACACAAAG---AATAAGATT-------------TAACCTCACTTAA----------------------CAC---------------------------------------------------------------------------------------------------------CC-----TATAATCTATGAAACTTA--------------------------ATATTGACGCACGGTAT--------------------ATTATACCCTACAGAGAAAGACCAGCTTTCACCGGCCGAGATTGTGAATTTGCCGAGCCAAGTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGATTGTGAATTTGC...........1912.00220000000000
....................CTAAGGACTCTGTATCCATTACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00220000000000
......AACTGCCATCGTGTCTAAGGACTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTTCACCGGCCGAGATTGT...................2211.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTTCACCGGCCGAGATTGTGA.................2411.00100100000000
.............ATCGTGTCTAAGGACTCTGTATCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCGGCCGAGATTGTGAATTTGC...........2511.00100010000000
.........TGCCATCGTGTCTAAGGACTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000
................GTGTCTAAGGACTCTGTATCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAGCTTTCACCGGCCGAGATT.....................2511.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGGCCGAGATTGTGAATTTGCCG.........2611.00100000100000
......AACTGCCATCGTGTCTAAGGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGATTGTGAATTTGCCGAGCCA....2411.00110000000000
.........TGCCATCGTGTCTAAGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
................GTGTCTAAGGACTCTGTATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
....GAAACTGCCATCGTGTCTAAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
...........CCATCGTGTCTAAGGACTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000
.........TGCCATCGTGTCTAAGGACTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGATTGTGAATTTGCCGA........2011.00100000010000
......AACTGCCATCGTGTCTAAGGACTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
..ACGAAACTGCCATCGTGTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCCGAGATTGTGAATT..............1911.00110000000000
droEre2
CAACGAAACGGCCAGAGTGTATACGGACTCTGTATCCATTACCATATCCAGTAAGTAATG-CCTA-TATCT-GT-------CCG---------CA----------------------AATG-T---TTGCCAATACCTA--------------------------------------------TATCGCTAACCAATCGCTTAACCTTATAC-AAATTGCGGCATTTA----------TC-AAAGGATATGCCCAGGAAATGCTGGCACGCTACGGTATTTAACATTTTTAA-ACAAAT---TATATGAATTTGTATTACGATTTTTCCACATAAAG----------------------CAC---------------------------------------------------------------------------------------------------------ATCTATGCATAATCTATGTAAACC--------------------------CATATTGACGCACAGTATC---CTTTGCTTTAACCCAAAATGTACCCCGCAGAGAAAGACCAGCTTTCACCGGCTGAGATTGTGAATTTGCCGAGCCACGTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................GTGTATACGGACTCTGTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATTGTGAATTTGCCGAGCCACGT.2711.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGATTGTGAATTTGCC..........1911.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCACCGGCTGAGATT.....................1911.0010100000
.....................TACGGACTCTGTATCCATTACCATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.........GGCCAGAGTGTATACGGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
....................ATACGGACTCTGTATCCATTACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000

Generated: 05/17/2015 at 04:13 AM