ID:

dvi_8417

 Coordinate:

scaffold_12928:1254653-1254803 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.6 -22.9 -22.7

Flybase annnotation

CDS [Dvir\GJ16775-cds]; exon [dvir_GLEANR_17282:1]; intron [Dvir\GJ16775-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGCCGCCGCAGCATCTATTCACCACATGCCGCAACCTGGAGCAGGCCACAGTAAGTACATTTGCCCAGTCATGTCACCCTAACGGGTGACTCATGCACAGGGTCAATTGTTAAAGAGTATCAACGACATCTACACATCGAAACTACGCGAATAATTATAAGTGGCAACAGCAACAACAACAGCAGCAACAACAGCAACAACCCGTAACGCGAGCGAGACAGCAAGAAATATTCTTGTCTTGTGTGTGGCAT
*******************************************************.(((.((((((.((((((((((((....)))))))..))).)).))).))).)))..................*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 SRR060679
140x9_testes_total
 SRR060658
140_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060678
9x140_testes_total
 M027
male body		 SRR060656
9x160_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060667
160_females_carcasses_total
 SRR060687
9_0-2h_embryos_total
 V053
head
 SRR060686
Argx9_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 M061
embryo
 SRR060676
9xArg_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060673
9_ovaries_total
 V047
embryo
.................TTCACCACATGCCGCAACCTG..................................................................................................................................................................................................................... 21 0 1 3.00 3 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TACATTTGCCCAGTCATGTCA............................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CAACAACAGCAACAACCCGTA............................................. 21 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................GTTAAAGAGTATCAACGACA........................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TGCCGCAACCTGGAGCAGGCC............................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AGTATTCTTGTCTTGTGTGT..... 20 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TGCATTTGCCCAGTCATGTC................................................................................................................................................................................ 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TACATTTGCCCAGTCATGTCG............................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CATGCCGCAACCTGGAGCAGG.............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAGTACATTTGCCCAGTCATG.................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGCACAGGGTCGGTTGTTAA.......................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AACCCGTAACGCGAGCGAGAC................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................CAGTCATGTCACCCTAACGGG..................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TAAAGAGTGTCAACGACATCT........................................................................................................................ 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................CCACATGCCGCAACCTGGAGC................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................AATTATAAGTGGCAACAGCA............................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................ACATGCCGCAACCTGGAGCAG............................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGTACATTTGCCCAGTCA.................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TAGTTATAGGTGGCAACAGCA............................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TATTCTTGTCTTGTGTGTGGC.. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................GCCGCAACCTGGAGCAGGCCAC.......................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TAACGCGAGCGAGACAGCAAGA......................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................AACGACATCTACACATCGAAAC............................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................AATAATTATAAGTGGCAACAG................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................CGCAACCTGGAGCAGGCCACAGA....................................................................................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AATATTCTTGTCTTGTGTGTG.... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................ACGGGTGACTCATGCACGGGG..................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CATCGAAACTACGCGAATAAT................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CATCTACACATCGAAACTGCG........................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TAACGCGAGCGAGACAGCAAG.......................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CGAAACTACGCGAAGAAC................................................................................................ 18 2 6 0.67 4 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................AACAACGGGAATAATTATAAGG......................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TACGCGAATGATTATGGGTGG....................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TCGAAACTACGCGAAGAAC................................................................................................ 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CTTACGGGTGACTCATACGC......................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TTCGAAGCTACGCGAAGAAT................................................................................................ 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................ACGCGAATGATTATAGGT......................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................TCGAATCTACGCGAAGAA................................................................................................. 18 2 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GCAACAGCAACAACAACAGCAGCA................................................................ 24 0 20 0.10 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TCGAAACTACGCGAAGAACC............................................................................................... 20 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GAAGCATGCCTCAGTAAGTA.................................................................................................................................................................................................. 20 3 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGCAGCAACAACAGCAACAAC.................................................. 21 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0
...............................................................................................................................................................................ACAACAGCAGAAACAACTTCAACAACC................................................. 27 3 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CTTCGAAGCTACGCGAAGA.................................................................................................. 19 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................GTGGCAACAGCAACAACAC........................................................................ 19 1 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................CCTAAGGGGGGGCTCATG............................................................................................................................................................ 18 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AACAACAACAGCAGCAACAACAGCAACA.................................................... 28 0 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................CAACAACAACAGCAGCAACA............................................................. 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................CAACAGCAGCAACAACAGCAA...................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGCAGCAACAACAGCAACAA................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................GCAACAACAACAGCAGCAACA............................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................AGCAACAACAACAGCAGCAACAACAGC........................................................ 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................AACAGCAACAACAACAGCAGCA................................................................ 22 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CATCACATTCCGAAACCTG..................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................ACAACAACAGCAGCAACAACA.......................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TCGAATCTACGCGAAGAAC................................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................GCAACAACAACAGCAGCAAC.............................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................ACAGCAGCAACAACAGCAACA.................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CAGCAACAACAACAGCAGCA................................................................ 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................GCAACAACAACAGCAGCAACAACA.......................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AGCAACAACAGCGACAACCCA............................................... 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................AGCAGCAACAACAGCAACA.................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AACAACAGCAGCAACAACAGCA....................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AACAACAACAGCAGCAACAACAGC........................................................ 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................ACAACAGCAGCAACAACAGCAACA.................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

TCGGCGGCGTCGTAGATAAGTGGTGTACGGCGTTGGACCTCGTCCGGTGTCATTCATGTAAACGGGTCAGTACAGTGGGATTGCCCACTGAGTACGTGTCCCAGTTAACAATTTCTCATAGTTGCTGTAGATGTGTAGCTTTGATGCGCTTATTAATATTCACCGTTGTCGTTGTTGTTGTCGTCGTTGTTGTCGTTGTTGGGCATTGCGCTCGCTCTGTCGTTCTTTATAAGAACAGAACACACACCGTA
***************************************************************************************************************************.(((.((((((.((((((((((((....)))))))..))).)).))).))).)))..................******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060658
140_ovaries_total
 M027
male body		 SRR060674
9x140_ovaries_total
 SRR060676
9xArg_ovaries_total
 V116
male body		 M061
embryo
 SRR060683
160_testes_total
 SRR060684
140x9_0-2h_embryos_total
 V053
head
 SRR060655
9x160_testes_total
 GSM1528803
follicle cells		 SRR060654
160x9_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060673
9_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060688
160_ovaries_total
 M028
head
 SRR060666
160_males_carcasses_total
 SRR060670
9_testes_total
.......CGTCGTAGGTGAGTGGTGTAC............................................................................................................................................................................................................................... 21 2 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GTTGGGCATTGCGCTCGCTCT................................. 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......CGTCGTAGGTAAGTGGTGTAC............................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..GGCGGCGTCGTAGGTAAGTGG.................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TGTAGCTTTGATGCGCTTATTAAT.............................................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CGTTCTTTATAAGAACAGAACACA....... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TCGTTGTTGGGCATTGCGCTCG..................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........GTAGATAAGTGGTGTACG.............................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................GATGTGTAGCTTTGATGCGCT..................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TATCGCCCACTGAGTACGAGTC....................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................GTCCGGTGTCATTCATGTAAA............................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...GCGGCGTCGTAGATAAGTGGT................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TCTCATAGTTGCTGTAGATGT..................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTGGACCTCGTCCGGTGTCAT...................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................GTGTAGCTTTGATGCGCTTAT.................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CTTGTTGTCGTTGTTGGGCAT............................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................GGTTGCCCACTGAGTACGTGT........................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TTGCTGTAGATGTGTAGCTTT............................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGAGTACGGGTCCCAGTTAACAATT.......................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................ACTGAGTACGTGTCCCGGTTG................................................................................................................................................ 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGAGTACGTGTCCCAGTTAAC.............................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CGTCGTAGATAAGTGGTG.................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................AGTGGTGTACGGCGTTGGACCT................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................AAAGGTCAGTACAGTGGGATT......................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CGTTGTTGGGCATTGCGCTC...................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................GACCTCGTCCGGTGTCATTCA................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................CGTGTCCCAGTTAACAGTTTC........................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CGTCGTAGATAAGTGGTGTAC............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GTACGTGTCCCAGTTAACAATTT......................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........CGTAGATAAGTGGTGTACGGC............................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CCCACTGAGTACGTGTCCCA.................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTGGGCATTGCGCTCGCTCTG................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................GTAGATGTGTAGCTTTGATGC........................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................TCCGGTGTCATTCATGTAAAC............................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ACGTGTCCCAGTTAACAATTT......................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................AGTGGTGTACGGCGTTGGACC.................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................TGGCGTTGGACCTCGTCCGGTG.......................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CGTTGTAGTCGCTGCTGGGC............................................... 20 3 18 0.50 9 0 0 0 0 0 0 0 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CGTCGTAGATGGGTGGTGTA................................................................................................................................................................................................................................ 20 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CTCGCTCTGTCGTTCTTTGTG.................... 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CCGGCGGCGTCGTAGGTAAG....................................................................................................................................................................................................................................... 20 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCGTTGTAGTCGCTGCTGGGC............................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................TTTATAAGAAGAGAAAACAC...... 20 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................CGTTGTAGTCGCTGATGGGC............................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GTTGTTGTCGCTGCTGGGC............................................... 19 2 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CGTTGTAGTGGCTGTTGGGC............................................... 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................CCGTTGTCGTTGTGGTTGTCGTCGT................................................................ 25 1 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................CCGTTGTCGTTGTTGTGGTC..................................................................... 20 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:1254603-1254853 + dvi_8417 AGCC-GCCGCAGCATCTATTCACCACATGCCGCAACCTGGAGCAGGCCACAGTAAGTACA---T---------------------------------------------------TTGCCCAGTCA-TGTCACCCT---------------------------AACGGGTGACTCATGCAC---------------------------AGGGTCAATTGTTAAAGAGTATCAACGACATCTAC--ACATCGAAACTACGCGAATAATTATAAGTGGCAACAGCAACAACAACAGCAGCAA---CAACAGCAACA----------------------------------------------------ACCCGTA---------------ACGCGAGCGAGACAGC----A-------------A-------------GAA---ATATTCTTGTC---TTGTGT--------G-----TGGCAT
droMoj3 scaffold_6473:13735335-13735548 - AGCC-ACCGCAGCATCTTTTCACCACATGCCGCAATCTGGAGCAAGCCACGGTAAGTAGT---TTT------------------------------------G---------------TCTAGTCA-TGTC-----------------------------TCAAAGGGGTGACTCATGCAT-----C------------------------------------CCCCC--------------C--ACATCGAAACTACGCGAATAATTA---------------------ACAAAACTG-GCT--------------------ACAGCAACAA---------------TATACATACATATGTATAACCCGTA---------------ACGCGAGGGAGACAGC----A---------------------------GAA---ATATTCTTGTC---TT------------G-----TGGCAT
droGri2 scaffold_15203:8456608-8456829 - AGCC-GCCCCAGCATCTTTTTACGACTTGTCGCAACTTGGAGCAGGCCACAGTAAGTAAA-------------------------------------------------------------AGAAAAAAATGCCAA--------------------------CAATTCATGACTCATGCG----------------------------AA---------------------------------------AGAAACTACGCGAATTA-------------------------------------------AAAAGCAAAAATATATGGCAACAA---------------CAC--------TAGCCTAACCCGTCTATCCGTCCCTTCGTCCGC------------AACGATGACAGAACCACGGAGAG-CAATT---AAA---TTATTCTCGTC---TG-----------------CTGGCAT
droWil2 scf2_1100000004909:12003267-12003455 + AGCC-ACCGCAGCATTTATTTACCACATGTCGCAATCGGGAGCAGGCAACGGTGAGTTTT---GGTTTTATTT--T----AC-----------------------------------------TCT-AGTCACCCT----------------------------GCTGCTGACTCATCACCAACATCATCATCATCATAATCCATAATAG---------------------------------------AGACAAGACAACAACTA-------------------------------------------CAAAACACTAAGACAAACCAAAAA---------------TA----------------------------------------------------------A-------------T-------------GAA---AAAATTTTGCC-----------------------------
dp5 XL_group3a:1966541-1966754 + AGCC-GCCACAGCATCTCTTCACCACATGTCGCAGCCGGGCACAGGCAGTGGTGAGTACT---CGCTTGATTTATTTTTC----------------ATTT-CG---------------TCAAGTCATAGTTGCCCC----------------------------CTCCATGACTCATATCC---------------------------CA---------------------------------------AGAAACTACACGAATGA-------------------------------------------CAATATAACTAGACAGACAGACAA---------------CAACTAC-------------------------------------------------AAGCATGACGG--------CCACTAATTCGTG---GTC--ATTCTC------TCCAGTTTACTC--------C----A
droPer2 scaffold_11:2712370-2712583 - dpe_679 AGCC-GCCACAGCATCTCTTCACCACATGTCGCAGCCGGGCACAGGCAGTGGTGAGTACT---CGCTTGATTTATTTTTC----------------ATTT-CG---------------TCAAGTCATAGTTGCCCC----------------------------CTCCATGACTCATATCC---------------------------CA---------------------------------------AGAAACTACACGAATGA-------------------------------------------CAATATAACTAGACAGACAGACAA---------------CAACTAC-------------------------------------------------AAACATGACGG--------CCACTAATTCGTG---GTC--ATTCTC------TCCAGTTTACTC--------C----A
droAna3 scaffold_13335:1600721-1600865 + AGCC-ACCGCAGCATCTCTTCACGACCTGCCGGAACCGGGAGCAGGCCCAAGTAAGTGTT---GTCGGTTTTG--T----ATCCAAGTGACCCCTAAA-GCG-GT--CAAGAGACT-------------------C----------------------------GCCCATGACTCACGCCC---------------------------CG---------------------------------------AGAAACTACGCGAACAAATCT--------------------A-------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395454:67526-67660 - AGCC-GCCGCAGCATCTCTTCACGACCTGCCGGAACCGGGAGGTGGCCAAAGTAAGTGTCTAGTGTTTA-----TCCATC----CATTGACCC--------------------------CTAGTCATGGT------------------------------CAAGACCCATGACTCACGCCC---------------------------CG---------------------------------------AGAAACTACGCGAACAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302696:1731847-1732044 - AGCC-GCCGCAGCATCTCTTTACAACATGCCGCAGTCGGGCGCAGGCCACGGTAAGCAGG---GGGTTAACA-------C----CAGTGACCGCTGGACG-CGCTAATCGGTGACC---------------------------------------------GGGCGGCGTGACTCACACCC---------------------------CG---------------------------------------AGAAACTACGCGAACAATCC---------------------ACAAGAAC--ACA--ATAACAA------------------------------------------------------------------------------------------------------------------CTAACTAGCA---AAGCTAATCCGGCT---TGGGAC--------TTGGAAC----C
droFic1 scf7180000454059:130735-130838 + AAACATCAACAGCAGCAGCA---------------------------------------------------------------------------------------G---------------------------------------------------------------------------------------C---------------------------------------------------------------------------------AACAACAGCAACAACAACAGCAA---CAACAGCAATAACAACAGC-------------------------------------------------------------------GAGAACAG---CAACAAC-A-------------A-------------G------GAGTTGCCTCTTTTT------------G-----CGGCAG
droEle1 scf7180000490971:12862-12958 + AACA-TCAACAACAGCAACAG----------------------------------GTTATGC-AATT------------------------------------GT--A---------------------------------------------------------------------------------------C---------------------------------------------------------------------------------AACAACAATAACAACAGCAACAA---CAACAGCAACAAAAAGAAG-------------------------------------------------------------------CGCAAGCGTAACAAC----A-------------A-------------A-A---A---------------------------------------
droRho1 scf7180000779675:16547-16601 + AGCC-GCCGCAGCATCTGTTCACCACTTGCCGGAATCGCGCACAGGCCACGGTAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302421:2076803-2076891 - AGCC-GCCGCAGCATCTCTTCACCACCTGCCGCAACCGCCAGCAGGCCCAGGTAAGTTCG---G-------------------------------------------------------CTCGCCG------C-----------------------CGA-AGACGCCGGTGACTCACG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415141:218554-218646 - AGCC-GCCGCAGCATCTTTTCACCACCTGCCGGAATCGCGAGCAGGCAAAGGTACGTTTTTC-GTTG------------------------------------GT--CCAGCGATT---------------------------------------------GGATAGGGTGACTCACG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409064:216880-217044 - AGCC-GCCGCAGCATCTTTTTACCACTTGCCGAAATCGCGAACAGGCAAAGGTAAGTCTTTAAGTTGGA---------------------------------------------TT--------------GGCTCG---------GTCCAGTAA--CAACAAAAACCGGTGACTCACGAAA-----A------------------------------------CCAGA--------------AAACTATAGAAACTACGCGAACAATCT---------------------ACAAGAGCC-ACTCAATA-------------------------ACCAC------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chrX:8136979-8137033 - AGCC-GCCGCAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 x:7708460-7708709 - dsi_22241 AGCC-GCCGCAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGTGAGAGAT---GTTTTCTTCT------TAC-------------------------------------TTTGCCT-TGTCTCTCTACTAAGACAATCCAGTAATCCAAC-AAAACCGGTGACTCACAACCG-------------------------------------TCGAGCAGA---------------AACTACAGAAGCTACGCGAACAATCC---------------------ACAAGAGCC-ACT--ATTACTACA------------------AACCGCTTTTTAATCGTCCAAATGAGTATGCAT---------------------------------------------------------------AAATT---GAATGG-----------------------CTCCATTGGAATCGAAT
droSec2 scaffold_44:227886-228134 - AACC-GCCGCAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGTGAGAGAT---GTTTTCTTCT-------AC-------------------------------------TTTGCCT-TGTCTCTCTACTAAGACAATCCAGTAATCCAAC-AAAACCGGTGACTCACAACCG-------------------------------------TCGAGCAGA---------------AACTACAGAAGCTACGCGAACAATCC---------------------ACAAGAGCC-ACT--ATTACTACA------------------AACCGCTTTTTAATCGTCCAAATGAGTATGCAT---------------------------------------------------------------AAATT---GAATGG-----------------------CTCCATTGGAATCGAAT
droYak3 X:13177173-13177227 + AGCC-GCCGCAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4690:5792100-5792170 - AAAT-GCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATCATCGTCAGTGGCAGCAGCAGCAGCAGCAGCAGCAG---CAACAGCAGCA----------------------------------------------------ACCTGCA---------------AC------------------G-------------T-------------G---------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AGCC-GCCGCAGCATCTATTCACCACATGCCGCAACCTGGAGCAGGCCACAGTAAGTACA---T---------------------------------------------------TTGCCCAGTCA-TGTCACCCT---------------------------AACGGGTGACTCATGCAC---------------------------AGGGTCAATTGTTAAAGAGTATCAACGACATCTAC--ACATCGAAACTACGCGAATAATTATAAGTGGCAACAGCAACAACAACAGCAGCAA---CAACAGCAACA----------------------------------------------------ACCCGTA---------------ACGCGAGCGAGACAGC----A-------------A-------------GAA---ATATTCTTGTC---TTGTGT--------G-----TGGCATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................TTCACCACATGCCGCAACCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003101000000000000000000000000100000000000000000000000000000000000
........................................................TACA---T---------------------------------------------------TTGCCCAGTCA-TGTCA..............................................................................................................................................................................................................................................................................................................................................................2112.002002000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CAA---CAACAGCAACA----------------------------------------------------ACCCGTA---------------..............................................................................................2112.002000000000000000000000000100001000000000000000000000000000000000
..........................................................................................................................................................................................................................GTTAAAGAGTATCAACGACA....................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...........................TGCCGCAACCTGGAGCAGGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
........................................................TACA---T---------------------------------------------------TTGCCCAGTCA-TGTCG..............................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................CATGCCGCAACCTGGAGCAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.....................................................AAGTACA---T---------------------------------------------------TTGCCCAGTCA-TG.................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................A----------------------------------------------------ACCCGTA---------------ACGCGAGCGAGAC.................................................................................2111.001000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................CAGTCA-TGTCACCCT---------------------------AACGGG.........................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................CCACATGCCGCAACCTGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................AATTATAAGTGGCAACAGCA......................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
........................ACATGCCGCAACCTGGAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
...................................................GTAAGTACA---T---------------------------------------------------TTGCCCAGTCA-...................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGTC---TTGTGT--------G-----TGGC..2111.001000000000100000000000000000000000000000000000000000000000000000
............................GCCGCAACCTGGAGCAGGCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................TA---------------ACGCGAGCGAGACAGC----A-------------A-------------GA............................................2211.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................AACGACATCTAC--ACATCGAAAC...................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................AATAATTATAAGTGGCAACAG........................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..............................CGCAACCTGGAGCAGGCCACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ATATTCTTGTC---TTGTGT--------G-----TG....2111.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................CATCGAAACTACGCGAATAAT.......................................................................................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................TA---------------ACGCGAGCGAGACAGC----A-------------A-------------G.............................................2111.001000000001000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................GCAACAGCAACAACAACAGCAGCA.......................................................................................................................................................................................24200.102001000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................AGCAGCAA---CAACAGCAACA----------------------------------------------------AC..................................................................................................................21200.102000000000000000000010000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................GTGGCAACAGCAACAACAC...............................................................................................................................................................................................19140.071000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAA---CAACAGCAACA----------------------------------------------------....................................................................................................................28190.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................CAACAACAACAGCAGCAA---CA.................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................CAACAGCAGCAA---CAACAGCAA..........................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................AGCAGCAA---CAACAGCAACA----------------------------------------------------A...................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GCAACAACAACAGCAGCAA---CA.................................................................................................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................AGCAACAACAACAGCAGCAA---CAACAGC............................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................AACAGCAACAACAACAGCAGCA.......................................................................................................................................................................................22200.051000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................ACAACAACAGCAGCAA---CAACA..............................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GCAACAACAACAGCAGCAA---C..................................................................................................................................................................................20200.051000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................ACAGCAGCAA---CAACAGCAACA----------------------------------------------------....................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................CAGCAACAACAACAGCAGCA.......................................................................................................................................................................................20200.051000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GCAACAACAACAGCAGCAA---CAACA..............................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................AGCAGCAA---CAACAGCAACA----------------------------------------------------....................................................................................................................19200.051000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................AACAACAGCAGCAA---CAACAGCA...........................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAA---CAACAGC............................................................................................................................................................................24200.051000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................ACAACAGCAGCAA---CAACAGCAACA----------------------------------------------------....................................................................................................................24200.051000000000000001000000000000000000000000000000000000000000000000
droMoj3
AGCC-ACCGCAGCATCTTTTCACCACATGCCGCAATCTGGAGCAAGCCACGGTAAGTAGT---TTT------------------------------------G---------------TCTAGTCA-TGTC-----------------------------TCAAAGGGGTGACTCATGCAT-----C------------------------------------CCCCC--------------C--ACATCGAAACTACGCGAATAATTA---------------------ACAAAACTG-GCT--------------------ACAGCAACAA---------------TATACATACATATGTATAACCCGTA---------------ACGCGAGGGAGACAGC----A---------------------------GAA---ATATTCTTGTC---TT------------G-----TGGCATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................CTCATGCAT-----C------------------------------------CCCCC--------------C--ACATC........................................................................................................................................................................................................................................2111.001100000
...............................GCAATCTGGAGCAAGCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100
.......................................................................................................................CTAGTCA-TGTC-----------------------------TCAAAGGGGT........................................................................................................................................................................................................................................................................................................................2111.001000001
......................................GGAGCAAGCCACGGTAAGTAGT---TT.................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100
droGri2
AGCC-GCCCCAGCATCTTTTTACGACTTGTCGCAACTTGGAGCAGGCCACAGTAAGTAAA-------------------------------------------------------------AGAAAAAAATGCCAA--------------------------CAATTCATGACTCATGCG----------------------------AA---------------------------------------AGAAACTACGCGAATTA-------------------------------------------AAAAGCAAAAATATATGGCAACAA---------------CAC--------TAGCCTAACCCGTCTATCCGTCCCTTCGTCCGC------------AACGATGACAGAACCACGGAGAG-CAATT---AAA---TTATTCTCGTC---TG-----------------CTGGCATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................TTTTACGACTTGTCGCAACTTGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110
droWil2
AGCC-ACCGCAGCATTTATTTACCACATGTCGCAATCGGGAGCAGGCAACGGTGAGTTTT---GGTTTTATTT--T----AC-----------------------------------------TCT-AGTCACCCT----------------------------GCTGCTGACTCATCACCAACATCATCATCATCATAATCCATAATAG---------------------------------------AGACAAGACAACAACTA-------------------------------------------CAAAACACTAAGACAAACCAAAAA---------------TA----------------------------------------------------------A-------------T-------------GAA---AAAATTTTGCC-----------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................CCACATGTCGCAATCGGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
........................................AGCAGGCAACGGTGAGTTTT---G..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.................................................................................C-----------------------------------------TCT-AGTCACCCT----------------------------GCTGCTGA......................................................................................................................................................................................................................................................................................................................2111.00101000
......................CCACATGTCGCAATCGGGAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
.........................................................................................................................................................................................................................................................................A-------------------------------------------CAAAACACTAAGACAAACCA.........................................................................................................................................................2111.00100010
........................................AGCAGGCAACGGTGAGTTTT---GG.................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
.......................................................GTTTT---GGTTTTATTT--T----AC-----------------------------------------TCT-...................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.................ATTTACCACATGTCGCAATCGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
................................................................................AC-----------------------------------------TCT-AGTCACCCT----------------------------GCTGCTG.......................................................................................................................................................................................................................................................................................................................2111.00101000
.........................CATGTCGCAATCGGGAGCAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
......................CCACATGTCGCAATCGGGAGCAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
..............................................................................................................................................................................CATCACCAACATCATCATCAT...............................................................................................................................................................................................................................................................................................2130.33101000
dp5
AGCC-GCCACAGCATCTCTTCACCACATGTCGCAGCCGGGCACAGGCAGTGGTGAGTACT---CGCTTGATTTATTTTTC----------------ATTT-CG---------------TCAAGTCATAGTTGCCCC----------------------------CTCCATGACTCATATCC---------------------------CA---------------------------------------AGAAACTACACGAATGA-------------------------------------------CAATATAACTAGACAGACAGACAA---------------CAACTAC-------------------------------------------------AAGCATGACGG--------CCACTAATTCGTG---GTC--ATTCTC------TCCAGTTTACTC--------C----ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............ATCTCTTCACCACATGTCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
......................................................................................................................TCAAGTCATAGTTGCCCC----------------------------C.............................................................................................................................................................................................................................................................................................................................1911.0010100000000
.........................CATGTCGCAGCCGGGCACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000000
................................................................................................................................................................................TATCC---------------------------CA---------------------------------------AGAAACTACACGAA...........................................................................................................................................................................................................................2111.0010100000000
..................TTCACCACATGTCGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
........................ACATGTCGCAGCCGGGCACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................TAGTTGCCCC----------------------------CTCCATGAC.....................................................................................................................................................................................................................................................................................................................1911.0010100000000
......................................................................................................................................................................................................................................................................ATGA-------------------------------------------CAATATAACTAGACAGA............................................................................................................................................................2111.0010100000000
............CATCTCTTCACCACATGTCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......CACAGCATCTCTTCACCACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
.............ATCTCTTCACCACATGTCGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................A---------------CAACTAC-------------------------------------------------AAGCATGACGG--------C..........................................................2011.0010100000000
......................................GGCACAGGCAGTGGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
AGCC-GCCACAGCATCTCTTCACCACATGTCGCAGCCGGGCACAGGCAGTGGTGAGTACT---CGCTTGATTTATTTTTC----------------ATTT-CG---------------TCAAGTCATAGTTGCCCC----------------------------CTCCATGACTCATATCC---------------------------CA---------------------------------------AGAAACTACACGAATGA-------------------------------------------CAATATAACTAGACAGACAGACAA---------------CAACTAC-------------------------------------------------AAACATGACGG--------CCACTAATTCGTG---GTC--ATTCTC------TCCAGTTTACTC--------C----ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................CTTCACCACATGTCGCAGCCGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
.........................CATGTCGCAGCCGGGCACAGGCAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.......................CACATGTCGCAGCCGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
..........................ATGTCGCAGCCGGGCACAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
............CATCTCTTCACCACATGTCGCAGCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.......................CACATGTCGCAGCCGGGCACAGGCAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
droAna3
AGCC-ACCGCAGCATCTCTTCACGACCTGCCGGAACCGGGAGCAGGCCCAAGTAAGTGTT---GTCGGTTTTG--T----ATCCAAGTGACCCCTAAA-GCG-GT--CAAGAGACT-------------------C----------------------------GCCCATGACTCACGCCC---------------------------CG---------------------------------------AGAAACTACGCGAACAAATCT--------------------A-------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................T--CAAGAGACT-------------------C----------------------------GCCCATGACT....................................................................................................................................................................................................................................................................................................................2112.002100001
.............................................................................................CTAAA-GCG-GT--CAAGAGACT-------------------C----------------------------G.............................................................................................................................................................................................................................................................................................................................2112.002000002
.................CTTCACGACCTGCCGGAACCGGGAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
............CATCTCTTCACGACCTGCCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................CACGACCTGCCGGAACCGGGAGCAGGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
........GCAGCATCTCTTCACGACCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
................TCTTCACGACCTGCCGGAACCGGGAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
........................................................TGTT---GTCGGTTTTG--T----ATCCAA............................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................CACGACCTGCCGGAACCGGGAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
............CATCTCTTCACGACCTGCCGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.......................................................................................................................................C----------------------------GCCCATGACTCACGCCC---------------------------CG---------------------------------------A........................................................................................................................................................................................................................................2111.001100000
.....................................................................TTTG--T----ATCCAAGTGACCCCTA..................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..................TTCACGACCTGCCGGAACCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..............................................................................................................GAGACT-------------------C----------------------------GCCCATGACTCAC.................................................................................................................................................................................................................................................................................................................2011.001100000
..........AGCATCTCTTCACGACCTGCCGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
............................................................................................................AAGAGACT-------------------C----------------------------GCCCATGACTCA..................................................................................................................................................................................................................................................................................................................2111.001100000
....................CACGACCTGCCGGAACCGGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
...............................................................................................................AGACT-------------------C----------------------------GCCCATGACTCACGC...............................................................................................................................................................................................................................................................................................................2111.001100000
..................TTCACGACCTGCCGGAACCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.................CTTCACGACCTGCCGGAACCGGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.............ATCTCTTCACGACCTGCCGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..........................................CAGGCCCAAGTAAGTGTT---GTC................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............CTCTTCACGACCTGCCGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
......................CGACCTGCCGGAACCGGGAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
....................CACGACCTGCCGGAACCGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droBip1
AGCC-GCCGCAGCATCTCTTCACGACCTGCCGGAACCGGGAGGTGGCCAAAGTAAGTGTCTAGTGTTTA-----TCCATC----CATTGACCC--------------------------CTAGTCATGGT------------------------------CAAGACCCATGACTCACGCCC---------------------------CG---------------------------------------AGAAACTACGCGAACAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AGCC-GCCGCAGCATCTCTTTACAACATGCCGCAGTCGGGCGCAGGCCACGGTAAGCAGG---GGGTTAACA-------C----CAGTGACCGCTGGACG-CGCTAATCGGTGACC---------------------------------------------GGGCGGCGTGACTCACACCC---------------------------CG---------------------------------------AGAAACTACGCGAACAATCC---------------------ACAAGAAC--ACA--ATAACAA------------------------------------------------------------------------------------------------------------------CTAACTAGCA---AAGCTAATCCGGCT---TGGGAC--------TTGGAAC----CSizeHit CountTotal NormTotal
No Reads
droFic1
AAACATCAACAGCAGCAGCA---------------------------------------------------------------------------------------G---------------------------------------------------------------------------------------C---------------------------------------------------------------------------------AACAACAGCAACAACAACAGCAA---CAACAGCAATAACAACAGC-------------------------------------------------------------------GAGAACAG---CAACAAC-A-------------A-------------G------GAGTTGCCTCTTTTT------------G-----CGGCAGSizeHit CountTotal NormTotal
No Reads
droEle1
AACA-TCAACAACAGCAACAG----------------------------------GTTATGC-AATT------------------------------------GT--A---------------------------------------------------------------------------------------C---------------------------------------------------------------------------------AACAACAATAACAACAGCAACAA---CAACAGCAACAAAAAGAAG-------------------------------------------------------------------CGCAAGCGTAACAAC----A-------------A-------------A-A---A---------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGCC-GCCGCAGCATCTGTTCACCACTTGCCGGAATCGCGCACAGGCCACGGTAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AGCC-GCCGCAGCATCTCTTCACCACCTGCCGCAACCGCCAGCAGGCCCAGGTAAGTTCG---G-------------------------------------------------------CTCGCCG------C-----------------------CGA-AGACGCCGGTGACTCACG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AGCC-GCCGCAGCATCTTTTCACCACCTGCCGGAATCGCGAGCAGGCAAAGGTACGTTTTTC-GTTG------------------------------------GT--CCAGCGATT---------------------------------------------GGATAGGGTGACTCACG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AGCC-GCCGCAGCATCTTTTTACCACTTGCCGAAATCGCGAACAGGCAAAGGTAAGTCTTTAAGTTGGA---------------------------------------------TT--------------GGCTCG---------GTCCAGTAA--CAACAAAAACCGGTGACTCACGAAA-----A------------------------------------CCAGA--------------AAACTATAGAAACTACGCGAACAATCT---------------------ACAAGAGCC-ACTCAATA-------------------------ACCAC------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AGCC-GCCGCAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................CCACCTGCCGGAATCGCGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................21114.00140000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000010010000000000000000000010001000
............................GCCGGAATCGCGAGCAGGCAAAGGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006
.........CAGCATCTATTTACCACCTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................TCGCGAGCAGGCAAAGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000002000000000000000000000000000000000
.................ATTTACCACCTGCCGGAATCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000001000000
................................GAATCGCGAGCAGGCAAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TTACCACCTGCCGGAATCGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...........................TGCCGGAATCGCGAGCAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TCTATTTACCACCTGCCGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....................................CGCGAGCAGGCAAAGGTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000
............................GCCGGAATCGCGAGCAGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..................................ATCGCGAGCAGGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ATCGCGAGCAGGCAAAGGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
........................ACCTGCCGGAATCGCGAGCAGGCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CCGGAATCGCGAGCAGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............TCTATTTACCACCTGCCGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................CCGGAATCGCGAGCAGGCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
................TATTTACCACCTGCCGGAATCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CCGGAATCGCGAGCAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACCACCTGCCGGAATCGCGAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........CAGCATCTATTTACCACCTGCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................ACCTGCCGGAATCGCGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.................................AATCGCGAGCAGGCAAAGGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CTATTTACCACCTGCCGGAATCGCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......CCGCAGCATCTATTTACCACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ATCTATTTACCACCTGCCGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ACCTGCCGGAATCGCGAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
....................TACCACCTGCCGGAATCGCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.........................CCTGCCGGAATCGCGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ATCGCGAGCAGGCAAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ATCGCGAGCAGGCAAAGGTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
......................CCACCTGCCGGAATCGCGAGCAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................CGCGAGCAGGCAAAGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............ATCTATTTACCACCTGCCGGAATCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................ATCGCGAGCAGGCAAAGGTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................GCCGGAATCGCGAGCAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GCAGCATCTATTTACCACCTGCCGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CGGAATCGCGAGCAGGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ATTTACCACCTGCCGGAATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....................TACCACCTGCCGGAATCGCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CATCTATTTACCACCTGCCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AATCGCGAGCAGGCAAAGGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ATTTACCACCTGCCGGAATCGCGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACCACCTGCCGGAATCGCGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..................................ATCGCGAGCAGGCAAAGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..................TTTACCACCTGCCGGAATCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CGGAATCGCGAGCAGGCATT................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGCC-GCCGCAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGTGAGAGAT---GTTTTCTTCT------TAC-------------------------------------TTTGCCT-TGTCTCTCTACTAAGACAATCCAGTAATCCAAC-AAAACCGGTGACTCACAACCG-------------------------------------TCGAGCAGA---------------AACTACAGAAGCTACGCGAACAATCC---------------------ACAAGAGCC-ACT--ATTACTACA------------------AACCGCTTTTTAATCGTCCAAATGAGTATGCAT---------------------------------------------------------------AAATT---GAATGG-----------------------CTCCATTGGAATCGAATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................TACCACCTGCCGGAATCGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000020000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AATT---GAATGG-----------------------CTCCATTGGAA......2112.00200000000101000000
........................................................................................................................................................................................................................................................................................................................................................ATCGTCCAAATGAGTATGCAT---------------------------------------------------------------......................................................2111.00100000000010000000
......................................................................................................................................................................................................................................................................................................................TACA------------------AACCGCTTTTTAATCGT.....................................................................................................................................2111.00100000000010000000
......................................................................................................................................................................................................................................................................................................................................................................TATGCAT---------------------------------------------------------------AAATT---GAATGG-----------------------CTC..............2111.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................TTTTAATCGTCCAAATGAGTA..........................................................................................................................2111.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................ATGCAT---------------------------------------------------------------AAATT---GAATGG-----------------------CTCC.............2111.00100000000000001000
..................................................................................................................................................................AAACCGGTGACTCACAACCG-------------------------------------T......................................................................................................................................................................................................................................................................2111.00100000000001000000
..........................................CAGGCAAAGGTGAGAGAT---GTT................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.....................................................................................................................................................................................G-------------------------------------TCGAGCAGA---------------AACTACAGAAG....................................................................................................................................................................................................................................2111.00100000000010000000
..................................................................................................................................................................................................................................................................................................................................................TTTTTAATCGTCCAAATGAGT...........................................................................................................................2111.00101000000000000000
..............................CGGAATCGCGAGCAGGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
...............CTATTTACCACCTGCCGGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000010000000
..........................................................................................................................................................TCCAAC-AAAACCGGTGACTCAA.................................................................................................................................................................................................................................................................................................................2211.00100000000000010000
.............................................................................................................................................................................................................................GAGCAGA---------------AACTACAGAAGCTACGC..............................................................................................................................................................................................................................2411.00100001000000000000
droSec2
AACC-GCCGCAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGTGAGAGAT---GTTTTCTTCT-------AC-------------------------------------TTTGCCT-TGTCTCTCTACTAAGACAATCCAGTAATCCAAC-AAAACCGGTGACTCACAACCG-------------------------------------TCGAGCAGA---------------AACTACAGAAGCTACGCGAACAATCC---------------------ACAAGAGCC-ACT--ATTACTACA------------------AACCGCTTTTTAATCGTCCAAATGAGTATGCAT---------------------------------------------------------------AAATT---GAATGG-----------------------CTCCATTGGAATCGAATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................TTACCACCTGCCGGAATCGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATT---GAATGG-----------------------CTCCATTGGAATC....2211.0010100
...........................................................................................................................................................................................................................................................................................................................................................................AT---------------------------------------------------------------AAATT---GAATGG-----------------------CTCCATTGG........2211.0010100
.......................................................................................................................................................................GGTGACTCACAACCG-------------------------------------TCGAGC.................................................................................................................................................................................................................................................................2111.0010010
...........................................AGGCAAAGGTGAGAGAT---G..................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.................................................................................................................................................................................................................................................................CGCGAACAATCC---------------------ACAAGAGCC-......................................................................................................................................................................................2111.0011000
.....................................................................TTCT-------AC-------------------------------------TTTGCCT-TGTCTCT............................................................................................................................................................................................................................................................................................................................................................2011.0011000
........................................................................................................................................................AATCCAAC-AAAACCGGTGACT....................................................................................................................................................................................................................................................................................................................2111.0011000
..........................CTGCCGGAATCGCGAGCAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
............................................................................................................................................................................................................................................................................C---------------------ACAAGAGCC-ACT--ATTACTA..........................................................................................................................................................................2011.0010100
..............................CGGAATCGCGAGCAGGCAAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
.................ATTTACCACCTGCCGGAATCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
.........................................GCAGGCAAAGGTGAGAGAT---GT.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
..................TTTACCACCTGCCGGAATCGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
...........................TGCCGGAATCGCGAGCAGGCAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
.................................................................................................................................................................................................................................AGA---------------AACTACAGAAGCTACGCG.............................................................................................................................................................................................................................2111.0010001
................................................................................................................................................................................................................................CAGA---------------AACTACAGAAGCTACGC..............................................................................................................................................................................................................................2111.0010001
............................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------------------AAATT---GAATGG-----------------------CTCCATTGG........2111.0011000
......................................................................................................................................................................................................................................................TACAGAAGCTACGCGAACAAT.......................................................................................................................................................................................................................2111.0010100
droYak3
AGCC-GCCGCAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................GAATCGCGAGCAGGCAAAGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
......................CCACCTGCCGGAATCGCGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEre2
AAAT-GCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATCATCGTCAGTGGCAGCAGCAGCAGCAGCAGCAGCAG---CAACAGCAGCA----------------------------------------------------ACCTGCA---------------AC------------------G-------------T-------------G---------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................CAGCAGCAG---CAACAGCAGC.........................................................................................................................................................................19200.0510100000

Generated: 05/17/2015 at 03:56 AM