ID:

dvi_8412

 Coordinate:

scaffold_12928:1245257-1245407 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.5 -4.5 -4.2

Flybase annnotation

exon [dvir_GLEANR_17281:1]; CDS [Dvir\GJ16774-cds]; intron [Dvir\GJ16774-in]

No Repeatable elements found

Sense Strand Reads

----------------------------------################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTTGTCGGCTGTGAGCAGCATACCAGATATTTGAATGCGCCGCGCTTTCAGTCAGCTGTCAAACCGATTGCAGACAGCTGGCAACCCTGTCCGCTGTTACACTGCGACTGTCAAAAGCGATAAAAAAAAAGTTGTCTGCTCGGCATTAAAATTAATTTGTAGCGCTGCTAAATATTTTCTAGCATATCGGTAAGTTTTGTTTACGCCCATGCACATGACATATTATTATTTAATTGGTAAGCGCTTGGCTG
**************************************************************************************************************************.......(((.((..((((((.((((....))))))).))))).))).......*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 SRR060667
160_females_carcasses_total
 M047
female body
 SRR060664
9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 V053
head
 M027
male body		 SRR060666
160_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060680
 9xArg_testes_total
 SRR060681
Argx9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 V047
embryo
 SRR060654
160x9_ovaries_total
 SRR1106729
mixed whole adult body
 SRR060660
Argentina_ovaries_total
..........................................................................................................................AAAAAAAAGTTGTCTGCTCGGC........................................................................................................... 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................AAAAAAAGTTGTCTGCTCGGC........................................................................................................... 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................AGTTGTCTGCTCGGCATTAAA..................................................................................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AATTTGTAGCGCTGCTAAATATT........................................................................... 23 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................AAAAGTTGTCTGCTCGGCA.......................................................................................................... 19 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GCGCTGCTAAATATTTTCT....................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................AAAAAAAGTTGTCTGCTCG............................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TGTTACACTGCGACTGTCA.......................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................CTGCGACTGTCAAAAGCGATAAAAAAA........................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TGTCAAAAGCGATAAAAAAAAAG........................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................AACCCTGTCCGCTGTTACAC..................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................AAAAGTTGTCTGCTCGGCATT........................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ATTAATTTGTAGCGCTGCTAAATATT........................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AAAGTTGTCTGCTCGGCATTAAAA.................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................AAGTTGTCTGCTCGGCATTAAAAT................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................GTCACACTGCGACTGTCAAAAGC..................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................AAAAAAAAAGCTGTCTGCTC.............................................................................................................. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................AAATAGTTGTCTGCTCGGC........................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AAAGTTGTCTGCTCGGCATTAAAATT.................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................CAAACCAATTGCAGACAGCGGGCA........................................................................................................................................................................ 24 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................AAAAGTTGTCTGCTCGGCATTA....................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................GTTACACTGCGACTGTCAAAAGCGATA................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TAAAAAAAAAGTTGTCTGCTC.............................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................AAAAAAAAGTTGTCTGCTCGGCATTA....................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................AACCCTGTCCGCTGTTACACTGCGACT.............................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TGCGACTGTCAAAAGCGA................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................AGCGCTGCTAAATATTTTCTAGCA................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................AGCGATAAAAAAAAAGTTGTCTGCTCGG............................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GATAAAAAAAAAGTTGTCTGCTC.............................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ATTTGTAGCGCTGCTAAATATT........................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................AAAGCGATAAAAAAAAAGTTGTCTGCT............................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GTTGTCTGCTCGGCATTAA...................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................AAGTTGTCTGCTCGGCATTAAAATT.................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ATTTGTAGCGCTGCTAAATA............................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AAAGTTGTCTGCTCGGCATTAA...................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AAGCGATAAAAAAAAAGTTGTCTGCT............................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................AAAAAGTTGTCTGCTCGGCA.......................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................TTACACTGCGACTGTCAAAAGC..................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................AAAGTTGTCTGCTCGGCATC........................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................AAAAAGTTGTCTGCT............................................................................................................... 15 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................AATTATTTAATTGGGAAGCGC....... 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................TGGCACATCGGTAAGTTT...................................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................TTTGAATGCTCCTCGCTTT........................................................................................................................................................................................................... 19 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................TTTGAATGCTCCTCGCTT............................................................................................................................................................................................................ 18 2 11 0.18 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
................................................................................................................................................................................................................................ATCATTTCATTGGTAAGC......... 18 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GAACAGCCGACACTCGTCGTATGGTCTATAAACTTACGCGGCGCGAAAGTCAGTCGACAGTTTGGCTAACGTCTGTCGACCGTTGGGACAGGCGACAATGTGACGCTGACAGTTTTCGCTATTTTTTTTTCAACAGACGAGCCGTAATTTTAATTAAACATCGCGACGATTTATAAAAGATCGTATAGCCATTCAAAACAAATGCGGGTACGTGTACTGTATAATAATAAATTAACCATTCGCGAACCGAC
***************************************************************************.......(((.((..((((((.((((....))))))).))))).))).......************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 SRR060674
9x140_ovaries_total
 V047
embryo
 SRR060656
9x160_ovaries_total
 SRR060669
160x9_females_carcasses_total
 V053
head
 M027
male body		 SRR060662
9x160_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 V116
male body		 SRR060683
160_testes_total
 M047
female body
 SRR060671
9x160_males_carcasses_total
 SRR060679
140x9_testes_total
.......................................................................TCCGTCGACCTTTGGGAAAGGCG............................................................................................................................................................. 23 3 1 9.00 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TTTCAACAGACGAGCCGT.......................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........CAATTGTCGCATGGTCTATAA............................................................................................................................................................................................................................ 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................TCAGTCGACAGTTTTACTAGCGT................................................................................................................................................................................... 23 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................CAGTCGACAGTTTTACTAGCGT................................................................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................TAGTCGACAGTTTTGCTAAAGT................................................................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........CAATTGTCGAATGGTCTATAA............................................................................................................................................................................................................................ 21 3 7 0.43 3 0 0 0 0 0 0 0 1 1 1 0 0 0 0
..................................................CAGTCGAGAGTTTGACTAAAGT................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............TTGTCGAATGGTCTATAAAA.......................................................................................................................................................................................................................... 20 3 20 0.25 5 0 0 0 0 0 0 5 0 0 0 0 0 0 0
..................................................................................TTGGGACAGGCGGCAAGAT...................................................................................................................................................... 19 3 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............TGTCGAATGGTCTATAAA........................................................................................................................................................................................................................... 18 2 20 0.10 2 0 0 0 0 0 0 1 0 0 0 0 0 0 1
...................................................AGTCGACAGTTTTCCTAGCGT................................................................................................................................................................................... 21 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................TGGGACAGGCGACTGTGCG..................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............TTGTCGAATGGTCTATAA............................................................................................................................................................................................................................ 18 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:1245207-1245457 + dvi_8412 CTTGTCGGCTGTGAGCAGCATACCAGATATTTG------AATGCGCC---------GCGCTTTCAGTCAGCT------GTCAAACCGATTGCAGACAGCTGGCAACCCTGT--CCGCTGTTACACTGCGACTGTCAAA----A--GCGA--TAAAA-AAAAAGTTGTCTGCTCGGCATTAAAATTAATTTGTA---GCGCTGCTAAATATTTTCTAGCATATCGGTAAGTTTTGTT----------------------------------------TACG---------------------CCCA-TGCACA------------------TG-ACATATTATTATT-----------------TAATTGGTA--AGC----------------------GCTTGG-------------------C------------------------------TG
droMoj3 scaffold_6473:13744525-13744781 - TC----ATCTGTGAGCAGCATACCAAATTTTTGCTTTCAAATGCGCC---------GCGCATTAAGTCAGCT------GTCAAACAA-------TTGGGTGGCAACTCTGTCCGCACTGTTACAGTGCGACTGTCAAA----A--ACGA--TAA-A-AAAAAGTTGTCTGCTCGGCATTAAAAAT--T--TCAGCAGCGCTGCTAAATATTTTCCAGCATATCGGTAAGTTTTGTT----------------------------------------TAAG---------------------CCCGAACTAGAGGAGTG---------------------AGC-------------------T-GAATTGGCAGGAGCGTTTTC------AATTGGCAATC---AG-------------------T------------------------------GG
droGri2 scaffold_15203:8467030-8467280 - TTTATTTATTTTG-------CACTTGGAGTTTG------AATGCAGC---------GCGTAGTTGGTCAGCT------GTCAAAGAA-------AAGGTTGGCAACCCTGC--G----ATTACCCTGCGACTGTCAAA----A--ACCACAT---A-AAAAAGTTGTCTGCTCGGTATTAAAAAA--T-TTTTGTGGCGCTGCTAAATATTTTCCAGCATATCGGTAAGTCTTGCT----------------------------------------TGTGTT-GAGCGATTCCTAGTAAA-TTA-----------------------------------AAT-------------------TGGAATTGGTA--AGCGTTCCCCCGATGAGCTGACAACG------------------------------------------------------AAG
dp5 XL_group3a:1958152-1958361 + -----------------------------------------------------------------GTCAGCT------GTCAAACGT-------GCAGTTGGCAACGCGGC--A----GTCACAGTTCGACTGTCAAA----A--GCGA--TA----AAAAAGTTGTCT---CCGCATCGAGAAT--T-CAAA----------TAAATATTTTCCAGCATTTCGGTAGGTTTTGCTCGATCTGTTCCGCAGCCACGCAGCTCCTCGAATTCCCGTGAAGTTT--TACATCCCCCGGTACA-TAC-----------------------------------AAT---------------------TATGA-------------------------GGAAAA---------ACA------------------------------------------GTTA
droPer2 scaffold_11:2720695-2720904 - -----------------------------------------------------------------GTCAGCT------GTCAAACGT-------GCAGTTGGCAACGCGGC--A----GTCACAGTGCGACTGTCAAA----A--GCGA--TA----AAAAAGTTGTCT---CCGCATCGAGAAT--T-CAAA----------TAAATATTTTCCAGCATTTCGGTAGGTTTTGCTCGATCTGTTCCGCAGCCACGCAGCTCCTCGAATTCCCGTGAAGTTT--TACATCCCCCGGTACA-TAC-----------------------------------AAT---------------------TATGA-------------------------GGAAAA---------ACA------------------------------------------GTTA
droAna3 scaffold_13335:1592613-1592800 + C---------------------------------------------------------------AGTCAGCT------GTCAAACGG-------TTAGTTGGCAACGCGGC--GCTCCGCCACAGTGTGACTGTCAAAGCAAA--GCGA--TAA-A-AAAAAGTTGTCT---CCGCATTAAGAGC--T-CACA----------GGAATATTTTCCAGCATTTCGGTAGGTATTC---------------------------------------C-----------------------------C---------------------CGCTAAT-ACATATTTGTTATTAACCAGAG-------------------------------------------------GTTGTCTGAGACATGGCCGGA------------------------------TT
droBip1 scf7180000395454:75422-75597 - C---------------------------------------------------------------AGTCAGCT------GTCAAACGG-------GTAGTTGGCAACGCGAC--TCTCCGCCACAGTGTGACTGTCAAAGCAAA--GCGA--TAA-A-AAAAAGTTGTCT---CCGCATTAAGAGC--T-CACA----------GGAATATTTTCCAGCATTTCGGTAGGTATTC---------------------------------------C-----------------------------C---------------------CTCTAAT-ACATATTTTTAAGCAACCGAAG-------------------------------------------------GTTGTCA------------------------------------------GAGA
droKik1 scf7180000302696:1740394-1740613 - TGC-----------------------------------------G-----------GCCCGCTTTGCCAACTGAAAATACCAAACAG-------ACAGTTGGCAACGCGGC--ACGCCGTCACAGTGCGACTGTCAAAGCAAA--GCGA--TA----AAAAGTTTGTCT---CCGCATTAAAAAA--GCCACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTTTC--------------------------------------GCCTACC---------------------CCCA-CCCCCACCGTCGGCCGGAGC----TG-CAAAA----CTCCTGGCCAAAGGCCACCTGCAGTC-----------------------------------GG-------------------C------------------------------CA
droFic1 scf7180000454077:1843227-1843432 + --------------------------------------------------------GCGCGCTCGGTCAGCT------GTCAACGCG-------GCAGTTGGCAACGCGGT---------------CCGTCTGTCAAAGCAAA--CCGA--TA----AAAAAGTTGTCT---CCGCATTAAGAGC--TCCACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTTC---------------------------------------ATCAACTTTTTGGTGCC-TAGAAGTCAGCCA-----------------------------------ATA---------------------CAAGT-------------------------GGCA-GT---GT-------------------GGCTTAAGTGGAGCGGCATCCTTTCGAAAGTTC
droEle1 scf7180000491006:1667375-1667549 - -----------------------------------------------------------------GTCAGCT------GTCAACGCG-------GCAGTTGGCAACGCGGC----------------CGACTGTCAAAGCAAA--CCGA--TTAAA-AAAAAGTTGTCT---CCGCATTAAGAGC--T-CACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTTC---------------------------------------GTCTAGTTT-CGTGGCTTTTTGGGTCA-CCA-----------------------------------AAC---------------------TGAGT-------------------------GGCAAGT---GG-------------------CGCTTGAG-----------------------TG
droRho1 scf7180000779675:6986-7193 + TATA--------------------AAATAATTA------AATAAACCGATAAATAAGCGCGGTGGGTCAGCT------GTCAACGCG-------GCAGTTGGCAACGCGGC----------------CGACTGTCAAAGCAAA--CCGA--TAA-A-AAAAAGTTGTCT---CCGCATTAAGAGC--T-CACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTTC---------------------------------------ATCCACTTT-TGGGGCTTTTAAGGCCA-CCA-----------------------------------AAC---------------------CGAGT-------------------------GGCAAGT---GG-------------------TGC----------------------------TG
droBia1 scf7180000302421:2086907-2087079 - -----------------------------------------------------------------GTCAGCT------GTCAACGCG-------GCAGTTGGCAACGCGGT---------------GCGACTGTCAAAGCAAA--CCGA--TA----AAAAAGTTGTCT---CCGCATTAAGAGC--TCCACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTTC---------------------------------------GCACACTTT-TGG-GCCCCCAAAGAGC-CCT-----------------------------------ACG---------------------CAGTGGGT----------------------AGCGAGT---GG---TGA--------------GG----------------------------TG
droTak1 scf7180000415141:227762-227942 - --------------------------------------------------------GCGCGGTCGGTCAGCT------GTCAACGCG-------GCAGTTGGCAACGCGGT---------------GCGACTGTCAAAGCAAA--CCGA--TAA---AAAAAGTAGTCT---CCGCATTAAGAGC--TCCACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTTC---------------------------------------GTGCACTTT-CGGGGCCTTCAAAGCCG-CCC---------------------CTCTGATCACAAATC-----------------------------------------------------------CCCTGG-------------------C------------------------------GA
droEug1 scf7180000409064:225360-225547 - GATA--------------------A---------------AT----T---------GCGCGGACGGTCAGCT------GTCAACGCG-------ACAGTTGGCAACGCGGT---------------CCGACTGTCAAACCAAA------------A-AAAAAGTTGTCT-CTCCGCATTAACAGGAATTAACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTAT---------------------------------------GTTTGTTAT-TGGGGCTTTTACACATC-CCT-----------------------------------ATT---------------------TAATT-------------------------GGAAAGT---GT-------------------TGCTTAA-------------------------G
dm3 chrX:8145543-8145739 - -------------------------------------------------------------------CAGCT------GTCAACGCG-------GCAGTTGGCAACGCGGT---------------CGGTCTGTCAAAGCAAAATCCGA--TAAAA-AAAAAGTTGTCT---CCACATTAAAAGA--T-CACA----------GGAATATTTTCCAGCATTTCGGTAGGTCTTC---------------------------------------GCCCACTTT-TGGCATCCTCCAGGATC-CCC-----------------------------------ATT---------------------CAGGT-------------------------GGCAAAT---GG-------------------CGGTGCAGTGGAGGAGCTGAC-TCCGAAAA-CG
droSim2 x:7717234-7717402 - -------------------------------------------------------------------CAGCT------GTCAATGCG-------GCAGTTGGCAACGCGGT---------------CGGTCTGTCAAAGCAAAATCCGA--TAAAA-AAAAAGTTGTCT---CCACATTAAAAGA--T-CACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTTC---------------------------------------GTCCGCTTT-TGGCGTCCTCCAGGATA-CCC-----------------------------------ATT---------------------CAGGT-------------------------GGCAATT---GG-------------------C------------------------------GG
droSec2 scaffold_44:236726-236920 - T--------------------------------------------------------------TGGCCAGCT------GTCAATGCG-------GCAGTTGGCAACGCGGT---------------CGGTCTGTCAAAGCAAAATCCGA--TAAAAAAAAAAGTTGTCT---CCACATTAAAAGA--T-CACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTTC---------------------------------------GTCCGCTTT-TGGCGTCCTCCAGGATA-CCC-----------------------------------ATT---------------------CAGGT-------------------------GGCAAGT---GG-------------------CGGTGCAGTGAAGAAGCAGAC----------TC
droYak3 X:13167885-13168061 + T-------------------------------------------------------------TGGGCCAGCT------GTCAACGCG-------GCAGTTGGCAACGCGGT---------------CCGACTGTCAAAGCAAAATCCGA--TAA-T-AAAAAGTTGTCT---CCGCATTAAGAGA--T-CACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTTC---------------------------------------GTGCACTTT-TGGCGTCCTCCAGGTAC-CCC-----------------------------------ATT---------------------CAGGT-------------------------GGCTGCGCATGG-------------------T------------------------------GC
droEre2 scaffold_4690:10512268-10512449 - --------------------------------------------------------GCGCGATTGGCCAGCT------GTCAACGCG-------GCAGTTGGCAACGCGGT---------------CCGTCTGTCAAAGCAAAATTCGA--TTACA-AAAAAGTTGTCT---CCGCATTAAGAGA--T-CACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTTC---------------------------------------GTGCACTTT-CCGCCTGCTCCAGGATC-CCC-----------------------------------ATT---------------------CAGGT-------------------------GGCAAGG---GT-------------------TGG----------------------------TG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CTTGTCGGCTGTGAGCAGCATACCAGATATTTG------AATGCGCC---------GCGCTTTCAGTCAGCT------GTCAAACCGATTGCAGACAGCTGGCAACCCTGT--CCGCTGTTACACTGCGACTGTCAAA----A--GCGA--TAAAA-AAAAAGTTGTCTGCTCGGCATTAAAATTAATTTGTA---GCGCTGCTAAATATTTTCTAGCATATCGGTAAGTTTTGTT----------------------------------------TACG---------------------CCCA-TGCACA------------------TG-ACATATTATTATT-----------------TAATTGGTA--AGC----------------------GCTTGG-------------------C------------------------------TGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................AAA-AAAAAGTTGTCTGCTCGGC.........................................................................................................................................................................................................................................................................................2213.003000300000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................AA-AAAAAGTTGTCTGCTCGGC.........................................................................................................................................................................................................................................................................................2112.002001100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................AGTTGTCTGCTCGGCATTAAA...................................................................................................................................................................................................................................................................................2112.002002000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................AATTTGTA---GCGCTGCTAAATATT......................................................................................................................................................................................................................................................2312.002000000000000001000010000000000000000000000000000000000000000000
..............................................................................................................................................................AAAAGTTGTCTGCTCGGCA........................................................................................................................................................................................................................................................................................1912.002000000000000000101000000000000000000000000000000000000000000000
....................................................................................................................................................................................................GCGCTGCTAAATATTTTCT..................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................AA-AAAAAGTTGTCTGCTCG...........................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................TGTTACACTGCGACTGTCA.................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................CTGCGACTGTCAAA----A--GCGA--TAAAA-AAA.........................................................................................................................................................................................................................................................................................................2711.001000000000000001000000000000000000000000000000000000000000000000
...................................................................................................................................TGTCAAA----A--GCGA--TAAAA-AAAAAG......................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................AACCCTGT--CCGCTGTTACAC............................................................................................................................................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................AAAAGTTGTCTGCTCGGCATT......................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
......................................................................................................................................................................................ATTAATTTGTA---GCGCTGCTAAATATT......................................................................................................................................................................................................................................................2611.001000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................AAAGTTGTCTGCTCGGCATTAAAA..................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................AAGTTGTCTGCTCGGCATTAAAAT.................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AAAGTTGTCTGCTCGGCATTAAAATT................................................................................................................................................................................................................................................................................2611.001000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................AAAAGTTGTCTGCTCGGCATTA.....................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................GTTACACTGCGACTGTCAAA----A--GCGA--TA................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TAAAA-AAAAAGTTGTCTGCTC............................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
.........................................................................................................................................................AAA-AAAAAGTTGTCTGCTCGGCATTA.....................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................AACCCTGT--CCGCTGTTACACTGCGACT.....................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000100000000000000000000000000000000000000000000
.............................................................................................................................TGCGACTGTCAAA----A--GCGA--..................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................A---GCGCTGCTAAATATTTTCTAGCA..............................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................A--GCGA--TAAAA-AAAAAGTTGTCTGCTCGG..........................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................GA--TAAAA-AAAAAGTTGTCTGCTC............................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................ATTTGTA---GCGCTGCTAAATATT......................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................AA----A--GCGA--TAAAA-AAAAAGTTGTCTGCT.............................................................................................................................................................................................................................................................................................2711.001000000000000000000010000000000000000000000000000000000000000000
..................................................................................................................................................................GTTGTCTGCTCGGCATTAA....................................................................................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................AAGTTGTCTGCTCGGCATTAAAATT................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................ATTTGTA---GCGCTGCTAAATA........................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................AAAGTTGTCTGCTCGGCATTAA....................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................A----A--GCGA--TAAAA-AAAAAGTTGTCTGCT.............................................................................................................................................................................................................................................................................................2611.001000000000000000010000000000000000000000000000000000000000000000
.............................................................................................................................................................AAAAAGTTGTCTGCTCGGCA........................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................TTACACTGCGACTGTCAAA----A--GC......................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................AAAGTTGTCTGCTCGGCATC......................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................AAAAAGTTGTCTGCT.............................................................................................................................................................................................................................................................................................1520.501000000000000000000000000000000000000000000000000000000000100000
droMoj3
TC----ATCTGTGAGCAGCATACCAAATTTTTGCTTTCAAATGCGCC---------GCGCATTAAGTCAGCT------GTCAAACAA-------TTGGGTGGCAACTCTGTCCGCACTGTTACAGTGCGACTGTCAAA----A--ACGA--TAA-A-AAAAAGTTGTCTGCTCGGCATTAAAAAT--T--TCAGCAGCGCTGCTAAATATTTTCCAGCATATCGGTAAGTTTTGTT----------------------------------------TAAG---------------------CCCGAACTAGAGGAGTG---------------------AGC-------------------T-GAATTGGCAGGAGCGTTTTC------AATTGGCAATC---AG-------------------T------------------------------GGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................A-A-AAAAAGTTGTCTGCTCGGC.........................................................................................................................................................................................................................................................................................2111.001000010
.............................................................................................................................................................AAAAAGTTGTCTGCTCGGCATT......................................................................................................................................................................................................................................................................................2211.001100000
...................................................................................................................................................GA--TAA-A-AAAAAGTTGTCTGCTC............................................................................................................................................................................................................................................................................................2211.001100000
.........................................................................................................................ACAGTGCGACTGTCAAA----A--AC......................................................................................................................................................................................................................................................................................................................2011.001100000
................................................................................................................................................................................ATTAAAAAT--T--TCAGCAGCGCTGCT.............................................................................................................................................................................................................................................................2411.001100000
....................................................................................................................CTGTTACAGTGCGACTGTCAAA----...........................................................................................................................................................................................................................................................................................................................2211.001100000
.....................................................................................................................................................................................................................................................................................................................AGAGGAGTG---------------------AGC-------------------T-GAATTGGC......................................................................................2111.001000010
...........................................................................................................................................................A-AAAAAGTTGTCTGCTCGGCATT......................................................................................................................................................................................................................................................................................2311.001000010
.............................................................................................................................................................AAAAAGTTGTCTGCTCGG..........................................................................................................................................................................................................................................................................................1811.001100000
..................................................................................................................................................CGA--TAA-A-AAAAAGTTGTCTGCTC............................................................................................................................................................................................................................................................................................2311.001000100
droGri2
TTTATTTATTTTG-------CACTTGGAGTTTG------AATGCAGC---------GCGTAGTTGGTCAGCT------GTCAAAGAA-------AAGGTTGGCAACCCTGC--G----ATTACCCTGCGACTGTCAAA----A--ACCACAT---A-AAAAAGTTGTCTGCTCGGTATTAAAAAA--T-TTTTGTGGCGCTGCTAAATATTTTCCAGCATATCGGTAAGTCTTGCT----------------------------------------TGTGTT-GAGCGATTCCTAGTAAA-TTA-----------------------------------AAT-------------------TGGAATTGGTA--AGCGTTCCCCCGATGAGCTGACAACG------------------------------------------------------AAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
-----------------------------------------------------------------GTCAGCT------GTCAAACGT-------GCAGTTGGCAACGCGGC--A----GTCACAGTTCGACTGTCAAA----A--GCGA--TA----AAAAAGTTGTCT---CCGCATCGAGAAT--T-CAAA----------TAAATATTTTCCAGCATTTCGGTAGGTTTTGCTCGATCTGTTCCGCAGCCACGCAGCTCCTCGAATTCCCGTGAAGTTT--TACATCCCCCGGTACA-TAC-----------------------------------AAT---------------------TATGA-------------------------GGAAAA---------ACA------------------------------------------GTTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................GTTGTCT---CCGCATCGAGAAT--..............................................................................................................................................................................................................................................................................2012.0020100100000
.................................................................................................................................ACTGTCAAA----A--GCGA--TA----AAA.........................................................................................................................................................................................................................................................................................................1911.0010000010000
...........................................................................................................................AGTTCGACTGTCAAA----A--GCGA--..................................................................................................................................................................................................................................................................................................................2011.0010000100000
...........................................................................................................................AGTTCGACTGTCAAA----A--GC......................................................................................................................................................................................................................................................................................................................1811.0010010000000
..................................................................................AACGT-------GCAGTTGGCAACGC.............................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
........................................................................................................................CACAGTTCGACTGTCAAA----A--........................................................................................................................................................................................................................................................................................................................1911.0010100000000
......................................................................................................................................................................................AAT--T-CAAA----------TAAATATTTTCCAGC...............................................................................................................................................................................................................................................2311.0010010000000
..............................................................................................................................................................AAAAGTTGTCT---CCGCATCGAGAAT--T-CAAA----------..............................................................................................................................................................................................................................................................2911.0010001000000
........................................................................................................................CACAGTTCGACTGTCAAA----A--GC......................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................TTGTCT---CCGCATCGAGAAT--T-............................................................................................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................................................................................................GGTTTTGCTCGATCTGTTCCG.................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................AAAAAGTTGTCT---CCGCATCGAG...................................................................................................................................................................................................................................................................................2211.0010000010000
...........................................................................................................................AGTTCGACTGTCAAA----A--GCG.....................................................................................................................................................................................................................................................................................................................1911.0010100000000
.................................................................................................................................................................AGTTGTCT---CCGCATCGAGAAT--T-CAAA----------..............................................................................................................................................................................................................................................................2611.0010100000000
.......................................................................................................................................................................................AT--T-CAAA----------TAAATATTTTCCAGCATTTCGA........................................................................................................................................................................................................................................2911.0010000001000
........................................................................................................................................................A----AAAAAGTTGTCT---CCGCATCGAGA..................................................................................................................................................................................................................................................................................2411.0010010000000
........................................................................................................................CACAGTTCGACTGTCAAA----A--GCG.....................................................................................................................................................................................................................................................................................................................2211.0010000100000
droPer2
-----------------------------------------------------------------GTCAGCT------GTCAAACGT-------GCAGTTGGCAACGCGGC--A----GTCACAGTGCGACTGTCAAA----A--GCGA--TA----AAAAAGTTGTCT---CCGCATCGAGAAT--T-CAAA----------TAAATATTTTCCAGCATTTCGGTAGGTTTTGCTCGATCTGTTCCGCAGCCACGCAGCTCCTCGAATTCCCGTGAAGTTT--TACATCCCCCGGTACA-TAC-----------------------------------AAT---------------------TATGA-------------------------GGAAAA---------ACA------------------------------------------GTTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................GTGCGACTGTCAAA----A--GCG.....................................................................................................................................................................................................................................................................................................................1811.001100000
....................................................................................................................................................................TGTCT---CCGCATCGAGAAT--T-CA..........................................................................................................................................................................................................................................................................2111.001010000
.........................................................................................................................ACAGTGCGACTGTCAAA----A--GC......................................................................................................................................................................................................................................................................................................................2011.001100000
................................................................................................................................................................AAGTTGTCT---CCGCATCGAGAAT--T-C...........................................................................................................................................................................................................................................................................2411.001010000
.................................................................................................................................................GCGA--TA----AAAAAGTTGTCT---CCGCATCG.....................................................................................................................................................................................................................................................................................2611.001000001
droAna3
C---------------------------------------------------------------AGTCAGCT------GTCAAACGG-------TTAGTTGGCAACGCGGC--GCTCCGCCACAGTGTGACTGTCAAAGCAAA--GCGA--TAA-A-AAAAAGTTGTCT---CCGCATTAAGAGC--T-CACA----------GGAATATTTTCCAGCATTTCGGTAGGTATTC---------------------------------------C-----------------------------C---------------------CGCTAAT-ACATATTTGTTATTAACCAGAG-------------------------------------------------GTTGTCTGAGACATGGCCGGA------------------------------TTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................AAGAGC--T-CACA----------GGAATATT......................................................................................................................................................................................................................................................1912.002000002
..............................................................................................................................................................................GCATTAAGAGC--T-CACA----------GGAATATT......................................................................................................................................................................................................................................................2412.002200000
..............................................................................................................................................................................GCATTAAGAGC--T-CACA----------GGA...........................................................................................................................................................................................................................................................1911.001000010
..............................................................................................................................................................................GCATTAAGAGC--T-CACA----------GGAATATTT.....................................................................................................................................................................................................................................................2511.001000010
..............................................................................................................................GTGACTGTCAAAGCAAA--GCGA--TAA-A-A...........................................................................................................................................................................................................................................................................................................2611.001000001
..............................................................................................................................................................................GCATTAAGAGC--T-CACA----------GGAATAT.......................................................................................................................................................................................................................................................2311.001010000
................................................................................................................................................................AAGTTGTCT---CCGCATTAAGAGC--T-CAC.........................................................................................................................................................................................................................................................................2611.001000001
............................................................................................................................GTGTGACTGTCAAAGCAAA--GC......................................................................................................................................................................................................................................................................................................................2111.001010000
...................................................................................................................................................................................AAGAGC--T-CACA----------GGAATATTTTCCAGCA..............................................................................................................................................................................................................................................2711.001000001
................................................................................................................................................................................ATTAAGAGC--T-CACA----------GGAATATT......................................................................................................................................................................................................................................................2211.001001000
.................................................................................................................................................GCGA--TAA-A-AAAAAGTTGTCT---.............................................................................................................................................................................................................................................................................................2011.001000010
..................................................................................................................................................................GTTGTCT---CCGCATTAAGAGC--T-C...........................................................................................................................................................................................................................................................................2211.001000001
..............................................................................................................................................................AAAAGTTGTCT---CCGCATTAAGAG.................................................................................................................................................................................................................................................................................2311.001010000
...............................................................................................................................................................AAAGTTGTCT---CCGCATTAAGAGC--T-............................................................................................................................................................................................................................................................................2411.001000010
............................................................................................................................GTGTGACTGTCAAAGCAAA--GCG.....................................................................................................................................................................................................................................................................................................................2211.001100000
...............................................................................................................................................................AAAGTTGTCT---CCGCATTAAGAGC--T-CACA----------..............................................................................................................................................................................................................................................................2811.001000100
...............................................................................................................................................................AAAGTTGTCT---CCGCATTAAGAGC--A-............................................................................................................................................................................................................................................................................2411.001000010
...................................................................................................................................................................................AAGAGC--T-CACA----------GGAATATTTTCC..................................................................................................................................................................................................................................................2311.001000001
.............................................................................................................................................................................................CACA----------GGAATATTTTCCAGCATTTCGA........................................................................................................................................................................................................................................2611.001100000
............................................................................................................................GTGTGACTGTCAAAGCAAA--GCGA--TA................................................................................................................................................................................................................................................................................................................2511.001000001
................................................................................................................................................................AAGTTGTCT---CCGCATTAAG...................................................................................................................................................................................................................................................................................1911.001000001
droBip1
C---------------------------------------------------------------AGTCAGCT------GTCAAACGG-------GTAGTTGGCAACGCGAC--TCTCCGCCACAGTGTGACTGTCAAAGCAAA--GCGA--TAA-A-AAAAAGTTGTCT---CCGCATTAAGAGC--T-CACA----------GGAATATTTTCCAGCATTTCGGTAGGTATTC---------------------------------------C-----------------------------C---------------------CTCTAAT-ACATATTTTTAAGCAACCGAAG-------------------------------------------------GTTGTCA------------------------------------------GAGASizeHit CountTotal NormTotal
No Reads
droKik1
TGC-----------------------------------------G-----------GCCCGCTTTGCCAACTGAAAATACCAAACAG-------ACAGTTGGCAACGCGGC--ACGCCGTCACAGTGCGACTGTCAAAGCAAA--GCGA--TA----AAAAGTTTGTCT---CCGCATTAAAAAA--GCCACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTTTC--------------------------------------GCCTACC---------------------CCCA-CCCCCACCGTCGGCCGGAGC----TG-CAAAA----CTCCTGGCCAAAGGCCACCTGCAGTC-----------------------------------GG-------------------C------------------------------CASizeHit CountTotal NormTotal
No Reads
droFic1
--------------------------------------------------------GCGCGCTCGGTCAGCT------GTCAACGCG-------GCAGTTGGCAACGCGGT---------------CCGTCTGTCAAAGCAAA--CCGA--TA----AAAAAGTTGTCT---CCGCATTAAGAGC--TCCACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTTC---------------------------------------ATCAACTTTTTGGTGCC-TAGAAGTCAGCCA-----------------------------------ATA---------------------CAAGT-------------------------GGCA-GT---GT-------------------GGCTTAAGTGGAGCGGCATCCTTTCGAAAGTTCSizeHit CountTotal NormTotal
No Reads
droEle1
-----------------------------------------------------------------GTCAGCT------GTCAACGCG-------GCAGTTGGCAACGCGGC----------------CGACTGTCAAAGCAAA--CCGA--TTAAA-AAAAAGTTGTCT---CCGCATTAAGAGC--T-CACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTTC---------------------------------------GTCTAGTTT-CGTGGCTTTTTGGGTCA-CCA-----------------------------------AAC---------------------TGAGT-------------------------GGCAAGT---GG-------------------CGCTTGAG-----------------------TGSizeHit CountTotal NormTotal
No Reads
droRho1
TATA--------------------AAATAATTA------AATAAACCGATAAATAAGCGCGGTGGGTCAGCT------GTCAACGCG-------GCAGTTGGCAACGCGGC----------------CGACTGTCAAAGCAAA--CCGA--TAA-A-AAAAAGTTGTCT---CCGCATTAAGAGC--T-CACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTTC---------------------------------------ATCCACTTT-TGGGGCTTTTAAGGCCA-CCA-----------------------------------AAC---------------------CGAGT-------------------------GGCAAGT---GG-------------------TGC----------------------------TGSizeHit CountTotal NormTotal
No Reads
droBia1
-----------------------------------------------------------------GTCAGCT------GTCAACGCG-------GCAGTTGGCAACGCGGT---------------GCGACTGTCAAAGCAAA--CCGA--TA----AAAAAGTTGTCT---CCGCATTAAGAGC--TCCACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTTC---------------------------------------GCACACTTT-TGG-GCCCCCAAAGAGC-CCT-----------------------------------ACG---------------------CAGTGGGT----------------------AGCGAGT---GG---TGA--------------GG----------------------------TGSizeHit CountTotal NormTotal
No Reads
droTak1
--------------------------------------------------------GCGCGGTCGGTCAGCT------GTCAACGCG-------GCAGTTGGCAACGCGGT---------------GCGACTGTCAAAGCAAA--CCGA--TAA---AAAAAGTAGTCT---CCGCATTAAGAGC--TCCACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTTC---------------------------------------GTGCACTTT-CGGGGCCTTCAAAGCCG-CCC---------------------CTCTGATCACAAATC-----------------------------------------------------------CCCTGG-------------------C------------------------------GASizeHit CountTotal NormTotal
No Reads
droEug1
GATA--------------------A---------------AT----T---------GCGCGGACGGTCAGCT------GTCAACGCG-------ACAGTTGGCAACGCGGT---------------CCGACTGTCAAACCAAA------------A-AAAAAGTTGTCT-CTCCGCATTAACAGGAATTAACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTAT---------------------------------------GTTTGTTAT-TGGGGCTTTTACACATC-CCT-----------------------------------ATT---------------------TAATT-------------------------GGAAAGT---GT-------------------TGCTTAA-------------------------GSizeHit CountTotal NormTotal
No Reads
dm3
-------------------------------------------------------------------CAGCT------GTCAACGCG-------GCAGTTGGCAACGCGGT---------------CGGTCTGTCAAAGCAAAATCCGA--TAAAA-AAAAAGTTGTCT---CCACATTAAAAGA--T-CACA----------GGAATATTTTCCAGCATTTCGGTAGGTCTTC---------------------------------------GCCCACTTT-TGGCATCCTCCAGGATC-CCC-----------------------------------ATT---------------------CAGGT-------------------------GGCAAAT---GG-------------------CGGTGCAGTGGAGGAGCTGAC-TCCGAAAA-CGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................AAAAGTTGTCT---CCACATTA.....................................................................................................................................................................................................................................................................................19112.001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CCAGGATC-CCC-----------------------------------ATT---------------------CAGGT-------------------------GGCAA...........................................................2417.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................T-CACA----------GGAATATTTTCCAGCAT.............................................................................................................................................................................................................................................2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................AAAAGTTGTCT---CCACATTAA....................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................AGCATTTCGGTAGGTCTT................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001001000
...............................................................................................................................................................AAAGTTGTCT---CCACATTAA....................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................GTTGTCT---CCACATTAAAAGA--..............................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AAAGTTGTCT---CCACATTA.....................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................GTTGTCT---CCACATTAAAAGA--T-CACA----------..............................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................AGTTGTCT---CCACATTAAAA..................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................ACATTAAAAGA--T-CACA----------GGAA..........................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................T---CCACATTAAAAGA--T-CACA----------GGAATATT......................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................ACGCGGT---------------CGGTCTGTCAAAGC.............................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................GTTGTCT---CCACATTAAAAGA--T-CA..........................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................AGTTGGCAACGCGGT---------------CGGT.......................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGGAGGAGCTGAC-TCC........2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
...................................................................................................................................................................................AAAAGA--T-CACA----------GGAATATTT.....................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
.....................................................................................................................................................................................AAGA--T-CACA----------GGAATATTT.....................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................ACGCGGT---------------CGGTCTGTCAAAGCA............................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TTAAAAGA--T-CACA----------GGAATAT.......................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................ACATTAAAAGA--T-CACA----------GG............................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................ATTAAAAGA--T-CACA----------GGAATAT.......................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................GTCT---CCACATTAAAAGA--T-CA..........................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGCAGTGGAGGAGCTGAC-TCC........2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
................................................................................................................................................................................ATTAAAAGA--T-CACA----------GGAATATT......................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000
..........................................................................................................................................................AA-AAAAAGTTGTCT---CCACA........................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................AAAAGA--T-CACA----------GGAATATTTTCCA.................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TGTCT---CCACATTAAAAGA--T-CACA----------GGAA..........................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................ACA----------GGAATATTTTCCAGC...............................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................GGCATCCTCCAGGATC-CCC-----------------------------------......................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................GGCAACGCGGT---------------CGGTCTGT...................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................CA----------GGAATATTTTCCAGCA..............................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................GTCT---CCACATTAAAAGA--T-CACA----------..............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AAAGTTGTCT---CCACATTAAAAGA--T-CA..........................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................AAAAAGTTGTCT---CCACAT.......................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................AGCATTTCGGTAGGTCTTC---------------------------------------G.......................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
....................................................................................................GGCAACGCGGT---------------CGGTCTGTCAAA...............................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TTAAAAGA--T-CACA----------GGAATATTTTCCAGC...............................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................ACGCGGT---------------CGGTCTGTCAA................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................ATTAAAAGA--T-CACA----------GGAAT.........................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
...........................................................................................................CGGT---------------CGGTCTGTCAAAGCAAA..........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AAAGTTGTCT---CCACATTAAAA..................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GATC-CCC-----------------------------------ATT---------------------CAGGT-------------------------GGCAAG..........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................ATCCGA--TAAAA-AAAAAGTTGTCT---.............................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................GA--TAAAA-AAAAAGTTGTCT---.............................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................AAAGA--T-CACA----------GGAATATTT.....................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................AAGTTGTCT---CCACATTAAAA..................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................AACGCGGT---------------CGGTCTGTCAAAGC.............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................GGCAACGCGGT---------------CGGTCTGTCAAAGC.............................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................CGGTCTGTCAAAGCAAAATCCG.....................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................GTCAAAGCAAAATCCGA--TA................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................CGA--TAAAA-AAAAAGTTGTC.................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................CT---CCACATTAAAAGA--T-CACA----------GG............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................AAGTTGTCT---CCACATTAAAAGA--..............................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AAAGTTGTCT---CCACATTAAA...................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................AAAAGA--T-CACA----------GGAATATTTTCCAGC...............................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................CACATTAAAAGA--T-CACA----------GGAATAT.......................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................ATCCGA--TAAAA-AAAAAGT.....................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................AAA-AAAAAGTTGTCT---CCA..........................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................AGTTGTCT---CCACATTAAAAGA--T-CA..........................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................A-AAAAAGTTGTCT---CCACATTAAAA..................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................AAAAGA--T-CACA----------GGAATAT.......................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
....................................................................................................................................................................................................................TCCAGCATTTCGGTAGGTCTTC---------------------------------------GCC.....................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................CATTAAAAGA--T-CACA----------GGAATATT......................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................AAGTTGTCT---CCACATTAAAAGA--T-CACA----------..............................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................TCT---CCACATTAAAAGA--T-CACA----------GGA...........................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................GA--T-CACA----------GGAATATTTTCCAGCATTT...........................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................ATTAAAAGA--T-CACA----------GGAATATTTTCCAA................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................GA--TAAAA-AAAAAGTTGTCT---CCA..........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................AGTTGGCAACGCGGT---------------CGGTCTGTCAA................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................AAAGA--T-CACA----------GGAATATT......................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................AAAAGTTGTCT---CCACATTAAA...................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................CATTAAAAGA--T-CACA----------GGAATATTT.....................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................................................AGTTGTCT---CCACATTAAAAGA--..............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................GA--T-CACA----------GGAATATTTTCCAG................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................A--TAAAA-AAAAAGTTGTCT---CCAC.........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TTAAAAGA--T-CACA----------GGAATATT......................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................GGCAACGCGGT---------------CGGTCTGTC..................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................AAGTTGTCT---CCACATTAAA...................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AAAGTTGTCT---CCACATTAAAAGA--T-CAC.........................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................AAAAAGTTGTCT---CCACATTAAA...................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................CATTAAAAGA--T-CACA----------GGAA..........................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................GCAAAATCCGA--TAAAA-AAAA........................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................CATTAAAAGA--T-CACA----------GGAATA........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................TGTCT---CCACATTAAAAGA--T-CAC.........................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................A-AAAAAGTTGTCT---CCACATTAAAAGA--T-............................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................CGCGGT---------------CGGTCTGTCAAAGC.............................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................TAAAAGA--T-CACA----------GGAATATT......................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................AAAGTTGTCT---CCACATTAAAAGA--T-CACA----------..............................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................GA--T-CACA----------GGAATATTTTCCAGCA..............................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................CATTAAAAGA--T-CACA----------GGA...........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TCCAGCATTTCGGTAGGT...................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................ATCCGA--TAAAA-AAAAAGTTG...................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCAGTGGAGGAGCTGA.............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................................T---CCACATTAAAAGA--T-CACA----------GGAATA........................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................AAAGA--T-CACA----------GGAATATTC.....................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................TCAAAGCAAAATCCGA--TAATC-............................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.......................................................................................................AACGCGGT---------------CGGTCTGTCA.................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................G-------GCAGTTGGCAACGCGGT---------------CGT........................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
droSim2
-------------------------------------------------------------------CAGCT------GTCAATGCG-------GCAGTTGGCAACGCGGT---------------CGGTCTGTCAAAGCAAAATCCGA--TAAAA-AAAAAGTTGTCT---CCACATTAAAAGA--T-CACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTTC---------------------------------------GTCCGCTTT-TGGCGTCCTCCAGGATA-CCC-----------------------------------ATT---------------------CAGGT-------------------------GGCAATT---GG-------------------C------------------------------GGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................ACATTAAAAGA--T-CACA----------GGAATA........................................................................................................................................................................................................................................................2211.00100001000000000000
...............................................................................................................................................................................CATTAAAAGA--T-CACA----------GGAATATT......................................................................................................................................................................................................................................................2311.00101000000000000000
....................................................................................................................................................................................AAAGA--T-CACA----------GGAATAT.......................................................................................................................................................................................................................................................1711.00100000010000000000
....................................................................................................GGCAACGCGGT---------------CGGTCTGTCAAAGCAA...........................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
....................................................................................................................................................................TGTCT---CCACATTAAAAGA--T-CACA----------GGAA..........................................................................................................................................................................................................................................................2711.00100000001000000000
..................................................................................................................................................................................TAAAAGA--T-CACA----------GGAATATTTTCCAGC...............................................................................................................................................................................................................................................2711.00100010000000000000
................................................................................................................................................................................ATTAAAAGA--T-CACA----------GGAAT.........................................................................................................................................................................................................................................................1911.00100000000000100000
.............................................................................................................................................AAATCCGA--TAAAA-AAAAA.......................................................................................................................................................................................................................................................................................................1811.00100000000001000000
..................................................................................................................................................................................TAAAAGA--T-CACA----------GGAATATTTT....................................................................................................................................................................................................................................................2211.00100000000000100000
..........................................................................................................................................................AA-AAAAAGTTGTCT---CCACATTAAAA..................................................................................................................................................................................................................................................................................2511.00100010000000000000
...................................................................................................................................................................................AAAAGA--T-CACA----------GGAATATTTTCCAGCATT............................................................................................................................................................................................................................................2911.00100000001000000000
..........................................................................................................................................................AA-AAAAAGTTGTCT---CCACAT.......................................................................................................................................................................................................................................................................................2011.00100000000001000000
................................................................................................................................................................................ATTAAAAGA--T-CACA----------GGAATATT......................................................................................................................................................................................................................................................2211.00110000000000000000
.......................................................................................................AACGCGGT---------------CGGTCTGTCAAAGCAA...........................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
droSec2
T--------------------------------------------------------------TGGCCAGCT------GTCAATGCG-------GCAGTTGGCAACGCGGT---------------CGGTCTGTCAAAGCAAAATCCGA--TAAAAAAAAAAGTTGTCT---CCACATTAAAAGA--T-CACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTTC---------------------------------------GTCCGCTTT-TGGCGTCCTCCAGGATA-CCC-----------------------------------ATT---------------------CAGGT-------------------------GGCAAGT---GG-------------------CGGTGCAGTGAAGAAGCAGAC----------TCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................AAAAGTTGTCT---CCACATTAAAAG.................................................................................................................................................................................................................................................................................2311.0010010
.................................................................................................GTTGGCAACGCGGT---------------CGGT.......................................................................................................................................................................................................................................................................................................................................1811.0010100
.......................................................................................................AACGCGGT---------------CGGTCTGTCAAAGCAA...........................................................................................................................................................................................................................................................................................................................2411.0010010
.............................................................................................................................................................................................................................................................................................GCGTCCTCCAGGATA-CCC-----------------------------------ATT---------------------..............................................................................................2111.0011000
............................................................................................................................................................................CCACATTAAAAGA--T-CACA----------GGA...........................................................................................................................................................................................................................................................2111.0010010
................................................................................................................................................................................ATTAAAAGA--T-CACA----------GGAATATTT.....................................................................................................................................................................................................................................................2311.0010001
...............................................................................................................................................................................CATTAAAAGA--T-CACA----------GGAATATTT.....................................................................................................................................................................................................................................................2411.0010100
.............................................................................................................................................................AAAAAGTTGTCT---CCACATTAAAA..................................................................................................................................................................................................................................................................................2311.0010010
.................................................................................................................................................................................TTAAAAGA--T-CACA----------GGAATAT.......................................................................................................................................................................................................................................................2011.0010100
.........................................................................................................................................................AAAAAAAAAGTTGTCT---CCAC.........................................................................................................................................................................................................................................................................................2011.0010010
..............................................................................................................................................................AAAAGTTGTCT---CCACATTAAA...................................................................................................................................................................................................................................................................................2111.0010010
.............................................................................................................................................................................CACATTAAAAGA--T-CACA----------GGA...........................................................................................................................................................................................................................................................2011.0010010
..............................................................................................................................................................................................................ATATTTTCCAGCATTTCGAA.......................................................................................................................................................................................................................................2030.3310100
droYak3
T-------------------------------------------------------------TGGGCCAGCT------GTCAACGCG-------GCAGTTGGCAACGCGGT---------------CCGACTGTCAAAGCAAAATCCGA--TAA-T-AAAAAGTTGTCT---CCGCATTAAGAGA--T-CACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTTC---------------------------------------GTGCACTTT-TGGCGTCCTCCAGGTAC-CCC-----------------------------------ATT---------------------CAGGT-------------------------GGCTGCGCATGG-------------------T------------------------------GCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................A-T-AAAAAGTTGTCT---CCGCATTAAGA..................................................................................................................................................................................................................................................................................2513.00302010000000
.............................................................................................................................................................AAAAAGTTGTCT---CCGCATTAAGA..................................................................................................................................................................................................................................................................................2312.00201000010000
................................................................................................................................................................................ATTAAGAGA--T-CACA----------GGAATATT......................................................................................................................................................................................................................................................2212.00200000020000
........................................................................................................ACGCGGT---------------CCGACTGTCAAAGCA............................................................................................................................................................................................................................................................................................................................2212.00210000010000
...................................................................................................................................................................................AAGAGA--T-CACA----------GGAATATTTT....................................................................................................................................................................................................................................................2111.00110000000000
............................................................................................................................................................................CCGCATTAAGAGA--T-CACA----------GGA...........................................................................................................................................................................................................................................................2111.00100010000000
.................................................................................................................................................................................TTAAGAGA--T-CACA----------GGAATATTT.....................................................................................................................................................................................................................................................2211.00100000010000
.....................................................................................................................................................................GTCT---CCGCATTAAGAGA--T-CACA----------GGA...........................................................................................................................................................................................................................................................2511.00101000000000
.................................................................................................................................................................................................................................................................................GTGCACTTT-TGGCGTCCTCCA..................................................................................................................................................................2111.00100000010000
....................................................................................................................................................................TGTCT---CCGCATTAAGAGA--T-CACA----------GGA...........................................................................................................................................................................................................................................................2611.00101000000000
...........................................................................................................................................................T-AAAAAGTTGTCT---CCGCATTAAGAGA--..............................................................................................................................................................................................................................................................................2611.00100000010000
....................................................................................................................................................................TGTCT---CCGCATTAAGAGA--T-CACA----------GGAA..........................................................................................................................................................................................................................................................2711.00101000000000
.......................................................................................................................................................................................GA--T-CACA----------GGAATATTTTCCAGCAT.............................................................................................................................................................................................................................................2411.00100000010000
..........................................................................................................GCGGT---------------CCGACTGTCAAAGCAAAAT........................................................................................................................................................................................................................................................................................................................2411.00110000000000
............................................................................................................................................AAAATCCGA--TAA-T-AAAAAGT.....................................................................................................................................................................................................................................................................................................2011.00101000000000
.......................................................................................................AACGCGGT---------------CCGACTGTCAAAGC.............................................................................................................................................................................................................................................................................................................................2211.00100100000000
...................................................................................................................................................................................AAGAGA--T-CACA----------GGAATATTTTCCAGCATT............................................................................................................................................................................................................................................2911.00100000010000
.......................................................................................................................................................................CT---CCGCATTAAGAGA--T-CACA----------GGA...........................................................................................................................................................................................................................................................2311.00101000000000
.................................................................................................................................................................................TTAAGAGA--T-CACA----------GGAATATTTTCC..................................................................................................................................................................................................................................................2511.00100000010000
........................................................................................................................................................AA-T-AAAAAGTTGTCT---CCGC.........................................................................................................................................................................................................................................................................................1911.00100010000000
...........................................................................................................................................................T-AAAAAGTTGTCT---CCGCATTAAGA..................................................................................................................................................................................................................................................................................2411.00101000000000
..............................................................................................................................................................AAAAGTTGTCT---CCGCATTAAGAGA--T-CA..........................................................................................................................................................................................................................................................................2711.00100000010000
...................................................................................................................................................................................AAGAGA--T-CACA----------GGAATATTT.....................................................................................................................................................................................................................................................2011.00100000010000
..............................................................................................................................................................................................................ATATTTTCCAGCATTTCGA........................................................................................................................................................................................................................................1920.50100000010000
droEre2
--------------------------------------------------------GCGCGATTGGCCAGCT------GTCAACGCG-------GCAGTTGGCAACGCGGT---------------CCGTCTGTCAAAGCAAAATTCGA--TTACA-AAAAAGTTGTCT---CCGCATTAAGAGA--T-CACA----------GGAATATTTTCCAGCATTTCGGTAGGTTTTC---------------------------------------GTGCACTTT-CCGCCTGCTCCAGGATC-CCC-----------------------------------ATT---------------------CAGGT-------------------------GGCAAGG---GT-------------------TGG----------------------------TGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................ATATTTTCCAGCATTTCG.........................................................................................................................................................................................................................................1813.0030000030
..............................................................................................................................................................................GCATTAAGAGA--T-CACA----------GGA...........................................................................................................................................................................................................................................................1912.0021001000
.............................................................................................................................................................AAAAAGTTGTCT---CCGCATTAAGAGA--..............................................................................................................................................................................................................................................................................2511.0010000010
........................................................................................................................................................TACA-AAAAAGTTGTCT---CCGCATTA.....................................................................................................................................................................................................................................................................................2411.0011000000
..................................................................................................................................................................GTTGTCT---CCGCATTAAGAG.................................................................................................................................................................................................................................................................................1911.0010000010
................................................................................................................................................................................ATTAAGAGA--T-CACA----------GGAATATTT.....................................................................................................................................................................................................................................................2311.0010000100
...............................................................................................................................................ATTCGA--TTACA-AAAAAGTT....................................................................................................................................................................................................................................................................................................1911.0010000010
..................................................................................................................................................................GTTGTCT---CCGCATTAAGAGA--T-............................................................................................................................................................................................................................................................................2111.0010000010
.................................................................................................................................................................AGTTGTCT---CCGCATTAAGAGA--T-CAC.........................................................................................................................................................................................................................................................................2511.0011000000
........................................................................................................................................AAGCAAAATTCGA--TTACA-AAAAAGTTGT..................................................................................................................................................................................................................................................................................................2811.0010100000
...............................................................................................................................................................................CATTAAGAGA--T-CACA----------GGA...........................................................................................................................................................................................................................................................1811.0011000000
.......................................................................................................................................................TTACA-AAAAAGTTGTCT---CCGC.........................................................................................................................................................................................................................................................................................2111.0010000100
...........................................................................................................................................................A-AAAAAGTTGTCT---CCGCATTAAGA..................................................................................................................................................................................................................................................................................2411.0010000010
................................................................................................................................................................................................................................GTAGGTTTTC---------------------------------------GTGCACTTT-CC............................................................................................................................................................................2111.0010000010
.......................................................................................................................................................................CT---CCGCATTAAGAGA--T-CACA----------GGAATAT.......................................................................................................................................................................................................................................................2711.0011000000
.............................................................................................................................................................................CGCATTAAGAGA--T-CACA----------GG............................................................................................................................................................................................................................................................1911.0010000100
...................................................................................................................................................................................................................................................................................................................................................ATT---------------------CAGGT-------------------------GGCAAGG---GT-------------------TG...............................1911.0010001000
.............................................................................................................................................................AAAAAGTTGTCT---CCGCATTAAGA..................................................................................................................................................................................................................................................................................2311.0010000010
...............................................................................................................................................................................CATTAAGAGA--T-CACA----------GGAATAT.......................................................................................................................................................................................................................................................2211.0011000000

Generated: 05/17/2015 at 03:52 AM