ID:

dvi_8393

 Coordinate:

scaffold_12928:1181078-1181224 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.0 -1.5

Flybase annnotation

CDS [Dvir\GJ16769-cds]; exon [dvir_GLEANR_17277:1]; exon [dvir_GLEANR_17277:2]; CDS [Dvir\GJ16769-cds]; intron [Dvir\GJ16769-in]

Repeatable elements

NameClassFamilyStrand
ROO_I-intLTRPao+
Gypsy8-I_Dpse-intLTRGypsy+
TART_DVLINEJockey+
mature
star
  1. scaffold_12855:891664-891691 -
  2. scaffold_12875:543814-543841 +
  3. dvi_8393  scaffold_12928:1181087-1181114 +
  4. scaffold_12963:11106596-11106623 -
  5. scaffold_12970:7988615-7988642 +
  6. scaffold_13042:2222962-2222989 -
  7. scaffold_13042:2817464-2817491 -
  8. scaffold_13047:6703610-6703637 -
  9. scaffold_13049:4254905-4254932 +
  10. scaffold_13049:23802338-23802365 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAGCGGTGGCAATGCCAGCAACAACAGCAGCAACAGCAGCAGCAGCAACAGCAACAACAACAGCAGCAACAACAGCAGCAGCAACAACAACAACAACAACAACAGCAACAACAACAACAACAGCAACAACAACAATAATAATAATAATAGTAATAGTAATAGTAATAATAATAATGGCGGCGCCAGCAGCTCGACAGCTGGCACATCCACGTCGTCGAATGAGCCGGCGCCGGACATTGTCTTCCAG
***********************************************************...((.((.......)).))...................................................................................................********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060686
Argx9_0-2h_embryos_total
 GSM1528803
follicle cells		 V116
male body		 M028
head
 SRR060659
Argentina_testes_total
 SRR1106726
embryo_14-16h
 SRR060684
140x9_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR1106729
mixed whole adult body
 SRR060672
9x160_females_carcasses_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060679
140x9_testes_total
 M027
male body		 M061
embryo
 SRR060662
9x160_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060673
9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060681
Argx9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR060689
160x9_testes_total
.......................................................................................................................................................................................................GTCACATCCACGTCGTCGAATG.......................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATCCACGTCGTCGAATGAGCCGG.................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................CTCGACAGCTGGCGCATCCACGTCG................................. 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TGCCACATCCACGTCGTCGAA............................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CATCCACGTCGTCGAATGAGCC...................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................CTCGACAGCTGGCACATCCACGTCG................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CGAATGAGCCGGCGCCGGACATT......... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AATAGTAATAGTAATAATAATAATGGC..................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................CCACAGCAGCAGCAGCAACAGCAACAACAACAGCAGC.................................................................................................................................................................................... 37 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TAGTTATAGTAAAAGTAATCATAATA.......................................................................... 26 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCGTAGAATGAACCGGC................... 17 2 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GAGATGGCACATCTACGTC.................................. 19 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TGGCGGCGGCAGCAACTCGA..................................................... 20 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTGTAGAATGAACCGGCGC................. 19 3 18 0.11 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................CAACAGCAGCAGCAGCAAC...................................................................................................................................................................................................... 19 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................GCAACAGCAACAACAACAGCAGCA................................................................................................................................................................................... 24 0 20 0.10 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............CAGCAACAACAGCAGCAACAGCAGC............................................................................................................................................................................................................... 25 0 20 0.10 2 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................AACAACAGCAGCAACAGCAGCAGCAGC......................................................................................................................................................................................................... 27 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................ACAGCAGCAACAACAGCAGCAGCAACAA................................................................................................................................................................ 28 0 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCGTCGAGTGATCCTGCGC................. 19 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................AACAGCAGCAACAACAGCAGCAGCAACA................................................................................................................................................................. 28 0 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CAGCAACAGCAGCAGCAGCA........................................................................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................AGCAACAACAGCAGCAACAGCAGCAGCA........................................................................................................................................................................................................... 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................CAGCAGCAACAACAGCAGCAG...................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CAACAACAACAACAGCAACAA........................................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................AGCAACAACAGCAGCAACAGC.................................................................................................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ACAACAACAGCAACAACAACA................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................CAGCAACAACAACAGCAGCAACAACAGC........................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................GCAACAACAGCAGCAACAGCA................................................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................CAACAACAGCAGCAGCAACA................................................................................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................AACAGCAACAACAACAACAACAGCAACA....................................................................................................................... 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................AACAACAGCAGCAACAGCAGCAGC............................................................................................................................................................................................................ 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................ACAGCAGCAACAGCAGCAGCAGCAA....................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................AGCAGCAGCAGCAACAGCAAC................................................................................................................................................................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................CAGCAACAACAACAGCAGCA................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................CAACAACAACAGCAGCAAC................................................................................................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................AACAACAACAACAACAGCAACAACA.................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................GCAGCAACAACAGCAGCAGCA.................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ACAACAACAGCAACAACAACA................................................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................AACAGCAGCAGCAACAACAACAACAA....................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GCAACAACAACAGCAGCAACAACA............................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................ACAACAACAGCAGCAACAACAG............................................................................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................GCAGCAACAACAGCAGCAGCAACAA................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................AACAACAACAACAGCAACAACAACAAC................................................................................................................................. 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CAGCAACAGCAGCAGCAGCAAC...................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................CAGCAGCAGCAGCAACAGCAACAACA............................................................................................................................................................................................ 26 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................AGCAGCAACAACAGCAGCA....................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................CAACAACAGCAACAACAACAACAACAGC........................................................................................................................... 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................AGCAACAACAGCAGCAGCAACAA................................................................................................................................................................ 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................AACAACAACAACAACAACAGC............................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................CAACAGCAGCAACAACAGCAGCA....................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AACAACAACAACAGCAACAAC..................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................AACAACAGCAGCAACAACAGCA.......................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AACAACAACAGCAGCAACAACAGC........................................................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................AGCAACAGCAGCAGCAGCAACAGCA.................................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................AACAGCAGCAGCAACAAC............................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................CAGCAACAACAGCAGCAGC..................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................AACAGCAGCAACAGCAGCAGCAGCA........................................................................................................................................................................................................ 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................GCAGCAACAGCAGCAGCAGCAAC...................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................AGCAGCAACAGCAGCAGCAGCAACAGC................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................AACAGCAGCAACAGCAGCAGCAGC......................................................................................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CAGCAACAACAGCAGCAACAGCA................................................................................................................................................................................................................. 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................AACAACAGCAGCAACAGCAGC............................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CAACAACAACAACAACAGC........................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................AGCAGCAACAACAGCAGCAG...................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................CAACAACAGCAGCAACAACAGCAGCA....................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................ACAGCAGCAACAGCAGCAGCAGCAACA..................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................AGCAACAGCAGCAGCAGCAACAGC................................................................................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................CAACAACAACAGCAGCAACA................................................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGCAACAACAACAGCAGCAACAACAGC........................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................AGCAGCAGCAGCAACAGCAACAACAAC.......................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CAACAACAGCAGCAACAGCAGCA.............................................................................................................................................................................................................. 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................................................................AACAACAGCAACAACAACAA................................................................................................................ 20 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................AACAGCAGCAGCAACAACAAC............................................................................................................................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................AGCAACAACAGCAGCAGCAA................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................AACAGCAGCAGCAACAACAACAACA........................................................................................................................................................ 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................GCAGCAGCAACAACAACAACAA....................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................ACAACAACAGCAGCAACAACA............................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................GCAGCAACAACAACAACAACAACAAC................................................................................................................................................ 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................ACAACAGCAGCAGCAACAACA.............................................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................CAGCAGCAGCAACAGCAACAA.............................................................................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................AGCAACAGCAGCAGCAGCAA....................................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTCGCCACCGTTACGGTCGTTGTTGTCGTCGTTGTCGTCGTCGTCGTTGTCGTTGTTGTTGTCGTCGTTGTTGTCGTCGTCGTTGTTGTTGTTGTTGTTGTTGTCGTTGTTGTTGTTGTTGTCGTTGTTGTTGTTATTATTATTATTATCATTATCATTATCATTATTATTATTACCGCCGCGGTCGTCGAGCTGTCGACCGTGTAGGTGCAGCAGCTTACTCGGCCGCGGCCTGTAACAGAAGGTC
*********************************************************************...((.((.......)).))...................................................................................................*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060681
Argx9_testes_total
 SRR060679
140x9_testes_total
 SRR060688
160_ovaries_total
 SRR1106729
mixed whole adult body
 V053
head
 V116
male body
.....................................TCGTCGTCGTTGTCGTTGTTG............................................................................................................................................................................................. 21 0 20 0.10 2 2 0 0 0 0 0 0
....................................................................................................................................................................................................................................CGGCCTGTGACAGAGGGTG 19 3 20 0.05 1 0 0 0 0 0 1 0
...............................TTGTCGTCGTCGTCGTTG...................................................................................................................................................................................................... 18 0 20 0.05 1 0 0 1 0 0 0 0
...........................................................................................................................GTTGTTGTTGTTATTATTATT....................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0
...................................................GTTGTTGTTGTCGTCGTTG................................................................................................................................................................................. 19 0 20 0.05 1 0 0 0 1 0 0 0
.................................................................CGTTGTTGTCGTCGTCGTTGTT................................................................................................................................................................ 22 0 20 0.05 1 0 0 0 0 1 0 0
...........................................................................................................................GTTGTTGTTGTTATTATTAT........................................................................................................ 20 0 20 0.05 1 0 1 0 0 0 0 0
............................................................................................................GTTGTTGTTGTTGTCGTT......................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:1181028-1181274 + dvi_8393 GA-GCGGT----GGCAATGCCAGCAACAACAG-----------------------CA---------GCAACAGCAGCAGCAGCAACAGCA---ACA---ACAACAGCAGCAACAACAGC------AGCAGCAACAACAACAACAAC------AAC---------------------------AACAGCAACAACA--ACA------------------AC---------A-----------ACAGCAACAACAACAATAAT---------------------------------AA------------TAATAATAGTAATAGT------------AATAG------------TAA---TAATAATAATG------------GCGGCGC--C-----------------------------AG---------------------------------------------CAGCTCGACAGC-TGGCACATC--------CACG---TCGTCGAA-------------------T---GA-----------GCCGGCG---CCG------------------GACATTGT-----C-TTCCA----G
droMoj3 scaffold_6473:10898388-10898639 + AG--CAGC----AGCAGCAGCAGCAGCAGCAA-----------CAGCAG------CA---------GCAGCAGCAGCAGCAGCAACAGCA---GCA---GCAACAACAGCAGCAACAGC------AGCAGCAACAGCAG---CAAC------AGC---------------------------AGCAACAGCAGCA--ACA---------GC------AAC---------A-----------GC---------AACAACAGCAGTAGCAGCAACAGCAGCAGCAGAAAC------AGCAG---------------CA---GC---------------------------------AG---CAGCAGCAGCA------------GCAACAG--C-----------------------------AGCAGCAGCAG------------------CAGCA---------------------------------ACAGCA-----------------------ACG---AC--AGAAAC----A------------ACAGCA---ACA------------------GCAGCTGC-----C-AC--AAATTG
droGri2 scaffold_14853:914096-914303 + GA-GGAGG----AGCAATTGCCACAGCAACAA-----------CAACAACAACAGCA---------ACAACAACAGCAACAACAACAGCA---ACA---ACAACAGCAAC------------------AACAACAGCAACAACAAC------AGC---------------------------AACAACAACAGCA--ACAACAACAGCAACAACAACAGCAACAACAACA-----------GCAGC---------------------------------AAC------------AACAA---------------CA---GCAGC------------AACAA------------CAGCAGCAACAACA---------------GCAGGAG--C-----------------------------AA------------------------------------------------------------------C-----AGCG------------------------------------------------------------------------------------------------ATCGA-AT-G
droWil2 scf2_1100000004888:1009666-1009906 - AG--CAAC----AACAACAGCAGCAACAACAA-----------------------CA---------GCAGCAGCAACAACAGCAACAGCA---ACA---ACAACAGCAGCAGCAACAGC------AACAGCAACAACAGCAGCAGC------AGC---------------------------AGCAACT--------GCA------ACAAC------AGC---------A-----------GCAGCAACAGCAACAGCAAC---------------------------------AA------------CATCAGCAGAAACAGC------------AACAA------------CAG---CAGCAACAGCA------------GCAACAG--C-----------------------------AA------------------------------------------------------------------CAA--CA---------------------ACACGA--------GATAG-AACATCAAGAGTGCCCATGGATGAG------------------GCCAAGAC-----C-GGCAT----T
dp5 4_group1:4704202-4704425 + AG-GCA-T----TGCGTGTTGCACAGCAACAA-----------CAGCAACAACAACA---------GCAACAGCAACAACAGCAACA------------GCAACAACAACGGCAAC------------AGACACATCACCAT--GC---AACAGC------A---------AACA-------AGCAACA--------ACG------CCAAC------ATC---------ACAATTATCATCACAACAAC------------------------------AAC------------AACAA------------CAGCAATCACAGC------------AAATC------------AAG---CAGCCAT-----------------------------------------------------------------------------------------------------------CGAGGGCGTGCCACAAC--------CACC---ACACCAAATGCT--------------------------------GC-------------------------------CGCAGC---------TGG----A
droPer2 scaffold_20:1633567-1633799 - AA-GCAGT----ATCATCAGAAACAGCAA--------------------------CA---------ACAACAGCAGCTGCAGCAACATCA---GAA---GAAACAGCATCAGCAAGAGC------AGCTGCAGCAGCAG------C------AAC------AGCAGCAGCAAAAGCAGCAACAGCGACA--------GCA------GCAAC------AGC---------A-----------ACAGAAGC---AA---CAGC------------------AAC------------AGAAG---------CAACAGCA---ACAT------------------------------------CAGCAACA------------GCACCAGCAG----------------------------------------------------------------------------------CGCG--------------------T-----------------------------ACATAAGC----------------------A---ACACCACACGGCCTTGTTTGAGCCGCCCC-----C-CTACA----T
droAna3 scaffold_13417:2512835-2513080 - CA-GTGGT----GCCGCCGGCAGCAACAGCGG-----------CTCTAA---CAGTACCA------GCAACAGCAACAGTAACACCAGCA---ATA---ATAATA---CC------------------AACATTAACAACAACAAC------AAC---------------------------AACAACAACAATA--ACAACAACAGCAGC--------------------------------------AACAACAACAAC---------AGCAGCAGCAAC------------AACAG---------CAACAGCGGCGAAAAT------------AATGGTGGAAGCAACAGCAGCAGCAACAACA---------------------G--C-----------------------------AA------------------------------------------------------------------CAC--CG---------------------AC----AT--GGAAAC---GG-----------ACCAGCT---GTG------------------CATCTACT-----C-GGCCA----G
droBip1 scf7180000396360:488617-488831 - CG-GCTGC----AGCAGCAGCAGCAACAGCAG-----------TATCAG---------------------CAGCTGCAGCAGCATCAACA---ACT---GCAGCAGCATCAACAACAGCAACAGCATCAACAACAGCAG---CAGC------ATC---------------------------AACAACAGCAGCA--TCAACAACAGCAAC-----------------------------------------AG---CATCA---GCAACTGCAGCAGCATCAGCAACAGCAACAGCAT------CAACATCAGCAGCA---TC------------AACAA------------CAGCAGCAACATCAA-------------------------------------------------------------------------------------------------------------------------CAACA-----------------------TC-------------------------------------------------------------------------------------G
droKik1 scf7180000302230:333985-334217 - AG--CAGC----AGCAGCAGCATCAACAGCAG-----------------------CC---------GCCACAGCAGCAGCAGGCACAGCA---AAC---GCAACAGCTGCAGCAACAGG------AGCCACAGCAGCAG------C------AAC---------------------------AGCAAG---GCGACAAAA------GTAAAAGT---AAT---------G-----------TC---------ATCAACAAT---------------------------------GA------------T-----------GTTC------------AAGTT------------AAGAATAATCACCA-----------------------------------------------------------------AATAATAAGCCAAACCGG------------------CAACAAGAAAAC-GGATGCAG--------------CGGCAACAAA-------------------T---GA-----------ACCAAGC---ACT------------------GACACTAG-----C-TTCCT----G
droFic1 scf7180000452689:393-644 + CA-GCA-------GCAATCGCAGCAGCAGCCG-----------------------CA---------GCAGCAACAGCCGCAGCGCCAACA---TCACCAGCTACTGCAGC------------------AGCAAAAACTGCAGCAGC------CGCAGCAGCAGCAACGACAGCAGCAGCAACAGCAGCA--------GCG------GC---------------------C-----------GCAGCAGC------------------------------AAC------------AGCAG------------CAGCAGCCGCAGC------------AGGAG------------------CG------------------------CAAG--C-GCAAGG--------TCGGCGCGGAAGGCCGCGGC-----------------------CGGCGGCAACAGCCAGGG---------G----------------CG---------------------AA----AT--G--------GA-----------GGCGGCG---GCG------------------CTCGTCGTCGC--CGCTCCA----G
droEle1 scf7180000491232:354037-354290 + AG--CATC----AGCAGCATCAACAACATCAG-----------------------CA---------GCATCAGCAACACCAGCAACACCA---GCA---GCAGCAACAGCACCAACAGCAGC---ATCAGCAACACCAGCAGCAGC------ACC---------------------------AGCAACA--------TCA------GCAGC------ATC---------A-----------ACAGCAGC---AT---CAGC------------------AAC------------ATCAG---------CAGCATCAGCAACACC------------AG---------------------CAGCTTCAGCAGCAGCAGCAGCAGCAACAGGGTGGCAATGGTCCCGTC-------------------------------------------TC--------------------------------------------------CCAGCAACAAATGGT--------------------------------GCCAGTCAGCGTG------------------GCTGCTGC-----C-TTGCA----G
droRho1 scf7180000760202:71864-72102 + AA--CAAC----AGCAGCAGCAACAACAGCAG-----------------------CA---------GCAACAACAACAGCAGCAGCAACA---ACA---GCAGCAGCAACAACAACAGC------AGCAGCAACAACAACAGCAGC------AGC---------------------------AACAACA--------GCA------GCAGC------AAC---------A-----------ACAGCAGC---AA---CAGC------------------AAC------------AACAA---------CAACAGCAGCAACAGC------------AACAA------------CAA---CAACAGCAGCT------------GCAACAA--C-----------------------------AACATCA----GGTC-------------------------------------------T-TGG-------------C----ACAGCA-----------------------ACAAC-CTCAG------------C----------------CTGGACAA-CAAGTCAT-----C-ACCCA----G
droBia1 scf7180000302428:5892594-5892816 + AA--CAGC----AGCAGATCCAGCAACAACAG-----------------------TT---------GCAACACCAACAGCAGCTGCAGCA---GCA---ACAACAGCAGCAGCAACAGC------AGCAACAACAACAACAGCAGC------AGC---------------------------AAAAACA--------ACA------GCAAC------AAC---------A-----------ACAACAACAGCAG---CAGC------------------AGC------------AG------------CAACAGCAGGTGCAGC------------AACAA------------CAA---CAGCAACAACA------------GAT--------------------------------------------------------------------------------------------------------------------------------------------C-----------A-----------TTCAGCA---GCAGACCACTGCCTCAGCTA-CAT----CCACTCT-GTCGG----A
droTak1 scf7180000415157:436372-436605 - GC---AAC----ACTAGCAAAGGC--TAGCAA-----------AAC---------CA---------CAAGCAGGACAAGCAGCAACAGCA---GCA---GCGACAGCAGCAGCGACAGC------AGCAACATCAACAGCAACATCAAC---AAC---------------------------ATCAGCAACAACA--GCAGCAGCGGC-----------------------------------------AGCAACACCGGC---------------------------------AA------------CAGCAAC---AGCAATACT---------AGCGA------------CAGCAGCAACACCAGCA---------------CCACCACGACGCTGTACACGTG-------------------------------------------CT--------------------------------------------------CCA--------------------------GC---GC-----------CTCCTCG---TCG------------------CTGATTGC-----C-CAGCC----G
droEug1 scf7180000409061:49401-49638 - CA-CCA-------GCAGCATCAGCAACAGCAG-----------------------CA---------CCAGCAGCAACAACAGCAACAACATCAGCA---ACAACAGCATC------------------AGCAGCAACAACACCACC------AGC---------------------------AGCAGCAACACCA--CCAACAGCAGCAAC------ACC---------A-----------CC---------AA---CAGC------------------AAC------AACATCTACAA------------CAGCAGCAGCAGC------------AACAC------------CAG---CAGCAGCAGCA------------GCAACAT--C-----------------------------AA------------------------------------------------------------------C-----AACT----CA---------------CGA--------GCAAC-ATGAGCATGTTGACCGTTAAAGGCG------------------GTCGTTAC-----C-TTTGG----A
dm3 chrX:5646998-5647244 + GG--CGGCATTCACCAGCAGCATCA---GCAG-----------------------CAGCAACACCAGCAGCACCAGCAGCAGCAACACCA---GCA---GCAGCAGCACC------------------AGCAACACCAGCAGCAAC------AGC---------------------------AGCAGCAACACCA--ACATCAGCAGCAGC------AAC---------A-----------GC---------AACACCTTCA---------------------------------G------------CAGCAGC---AACACCACCAGCTGCAGCAGCAA------------CAG---CAGCAGCA---------------GCAGCAT--C-----------------------------AA------------------------------------------------------------------C-----AACT----CG---------------CCA--------GCAAC-ATGAGCCTGCTGACCGTCAAAGGCG------------------GCCGTTAC-----C-TTTGG----A
droSim2 3l:9459954-9460204 + AG--CACC----AGCAACATCACCACCAACAG-----------------------CA------GCAGCAGCAGCATCAACA------------------GCAACAGCAGCAGCAACAGC------ATCAGCAGCAGCAG------C------AGC------AGCAACATCAACAGCAGCAACATCAACA--------GCA------GCAAC------ACC---------A-----------ACAGCAGC---AA---CAGC------------------AAC------------AGAAG---------CAGCTCCA---GC---------------------------------AG---CAGCAGCA------------GCATCAATGG--------------------------------AGCGGCAACAA------------------CGGCAGCAGCAACCAAAG---------GAG-CA--A---C-----AACTATGCCA--------------------------ACAACTA-----------TGCGGCG---GCA------------------GCCGCTGC-----C-TCC-------
droSec2 scaffold_9:365654-365895 - AG--GAGT----ACCAACAGCATCAGCAGCAC-----------------------CA---------GCAACAGCACCAGCAGCATCAGCA---ACA---TCAGCAGCACCAGCAGCATC------AGCAACAGCAGCAC------C------AAC---------------------------AGCATCA--------GCAACATCAGCAGCAGCAGCATC---------A-----------GCAGCAGC---AC---CAGC------------------AAC------------ATCAG---------------CAGCA---CC------------AACAA------------CACCAGCAGCATCAGCA---------------GCAGGGTGGCGGTGGGCCTGTC-------------------------------------------TC--------------------------------------------------CCAGCAGCAAATGGT--------------------------------GCCGGTCAGTGTG------------------GCGGCTGC-----C-TTCCA----G
droYak3 X:18714353-18714597 - GTAGCAAT----ACCAT---G-ACGACAACAATAAGCAAGCAGGAGCAG---CAGCA---------GCAGCAGCAGCAACAGCAGCATCA---GCA---GCAGCAGCAGC------------------AGCAACAACAGCAGCAAC------AGC---------------------------AGCAACAGCAGCA--ACAACAGCAGCAACAGCAGCAGCAACAGCAGCA-----------GCAGC---------------------------------AAC------------AACAGCAGCAGCAACATCAGCAGTATGTGC------------AACTA------------CAGCAGCAACATTT-----------------------------------------------------------------GGTGAC-----------------------------------------------------------------CA--------------------------GC---GA-----------TTCGGCG---GCA------------------GCTGTTCC-----C-ATCCC----G
droEre2 scaffold_4784:3586562-3586784 + AG--CAGC----AGCATCAGCAGCAGCAGCAG-----------------------CA---------GCATCAACAGCAGCAGCAGCAGCA---ACA---GCAGCAACAGCAGCAACAGC------AGCAGCAGCAACAACAGCAAC------AGC---------------------------AGCAGCAGCAACA--GCA------GCAGC------ATC---------A-----------ACAGCAAC---AG---CAGCA---ACAGC---------AAC------------AGCAG------------CAGCAGTTGCAGC------------CACAA------------CAG---CAGCTGCAGCC------------GCAACAG--C-----------------------------AGCAGCAGTTA------------------CAGCT---------------------------------GCAGCA-----------------------GC------------------------------------------------------------------------------C-AAATGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GA-GCGGT----GGCAATGCCAGCAACAACAG-----------------------CA---------GCAACAGCAGCAGCAGCAACAGCA---ACA---ACAACAGCAGCAACAACAGC------AGCAGCAACAACAACAACAAC------AAC---------------------------AACAGCAACAACA--ACA------------------AC---------A-----------ACAGCAACAACAACAATAAT---------------------------------AA------------TAATAATAGTAATAGT------------AATAG------------TAA---TAATAATAATG------------GCGGCGC--C-----------------------------AG---------------------------------------------CAGCTCGACAGC-TGGCACATC--------CACG---TCGTCGAA-------------------T---GA-----------GCCGGCG---CCG------------------GACATTGT-----C-TTCCA----GSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC--------CACG---TCGTCGAA-------------------T---GA-----------GCCGG...................................................2311.001000000000100000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATC--------CACG---TCGTCGAA-------------------T---GA-----------GCC.....................................................2211.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGACAGC-TGGCACATC--------CACG---TCG.................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAA-------------------T---GA-----------GCCGGCG---CCG------------------GACATT...................2311.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................AATAGT------------AATAG------------TAA---TAATAATAATG------------GC.............................................................................................................................................................................................................................2711.001000000000000000000000000000000000000100000000000000000000000000
...................................................................CAACAGCAGCAGCAGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102000000000000000000010100000000000000000000000000000000000000000
.................................................................................GCAACAGCA---ACA---ACAACAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102001000000000000000000000000001000000000000000000000000000000000
....................CAGCAACAACAG-----------------------CA---------GCAACAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102000000000000000001000000000000000000000000000000000000000000010
........................AACAACAG-----------------------CA---------GCAACAGCAGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.102002000000000000000000000000000000000000000000000000000000000000
......................................................................................................ACAGCAGCAACAACAGC------AGCAGCAACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28100.101000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................AACAGCAGCAACAACAGC------AGCAGCAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28190.051000000000000000000000000000000000001000000000000000000000000000
.......................................................CA---------GCAACAGCAGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.....................AGCAACAACAG-----------------------CA---------GCAACAGCAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................CAGCAGCAACAACAGC------AGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................CAACAAC------AAC---------------------------AACAGCAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.....................AGCAACAACAG-----------------------CA---------GCAACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................AC------AAC---------------------------AACAGCAACAACA--ACA------------------...................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000010000000000000000000000000000
.....................................................................................CAGCA---ACA---ACAACAGCAGCAACAACAGC------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
......................GCAACAACAG-----------------------CA---------GCAACAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................CAACAACAGC------AGCAGCAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................AACAGCAACAACA--ACA------------------AC---------A-----------ACAGCAACA...................................................................................................................................................................................................................................................................................................................................................................28200.051000000000000000000100000000000000000000000000000000000000000000
........................AACAACAG-----------------------CA---------GCAACAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000100000000000000000000000000000000000000000000000000
............................ACAG-----------------------CA---------GCAACAGCAGCAGCAGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000010000000000000000000000000000000000000000000
.......................................................................AGCAGCAGCAGCAACAGCA---AC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000010000000000000000000000000000000000000000000000
.....................................................................................CAGCA---ACA---ACAACAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000001000000000000000000000000000000000000000
........................................................................................CA---ACA---ACAACAGCAGCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................AACAACA--ACA------------------AC---------A-----------ACAGCAACAACA................................................................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................GCAGCAACAACAGC------AGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................ACA------------------AC---------A-----------ACAGCAACAACAACA.............................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................AACAGC------AGCAGCAACAACAACAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000000100000000000000000000000000
.......................................................................................GCA---ACA---ACAACAGCAGCAACAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................ACA---ACAACAGCAGCAACAACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................GCAGCAACAACAGC------AGCAGCAACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................AACAAC------AAC---------------------------AACAGCAACAACA--ACA------------------AC---------........................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000010000000000000000000000000000000000000000000000
.......................................................CA---------GCAACAGCAGCAGCAGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000010000000000000000000000000000000000000000000000000
......................................................................CAGCAGCAGCAGCAACAGCA---ACA---ACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000010000000000000000000000000000
........................................................................................................AGCAGCAACAACAGC------AGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................C------AAC---------------------------AACAGCAACAACA--ACA------------------AC---------A-----------ACAGC.......................................................................................................................................................................................................................................................................................................................................................................28200.051000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................AGCAACAACAGC------AGCAGCAACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................AACAACAACAAC------AAC---------------------------AACAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000010000000000000000000000000000000000000000000
....................................................................................................CAACAGCAGCAACAACAGC------AGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................AACA--ACA------------------AC---------A-----------ACAGCAACAAC.................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000010000000000000000000000000000
...............................................................................................A---ACAACAGCAGCAACAACAGC------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................A---ACA---ACAACAGCAGCAACAACAGC------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000100000000000000000000000000000000000000000000000000000000000
........................................................A---------GCAACAGCAGCAGCAGCAACAGCA---................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................AACAGC------AGCAGCAACAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000001000000000000000000000000000000
..........................................................................................................CAGCAACAACAGC------AGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000001000000000000000000000000000
...........................AACAG-----------------------CA---------GCAACAGCAGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000010000000000000000000000000000000000000000
...............................G-----------------------CA---------GCAACAGCAGCAGCAGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
..............................AG-----------------------CA---------GCAACAGCAGCAGCAGCAACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
...........................AACAG-----------------------CA---------GCAACAGCAGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000100000000000000000000000000000000000000000000000
....................CAGCAACAACAG-----------------------CA---------GCAACAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000001000000000000000000000000000
........................AACAACAG-----------------------CA---------GCAACAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................CAACAACA--ACA------------------AC---------A-----------ACAGC.......................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000001000000000000000000000000000000000000000000000000
........................................................................................................AGCAGCAACAACAGC------AGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................CA---ACAACAGCAGCAACAACAGC------AGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
............................ACAG-----------------------CA---------GCAACAGCAGCAGCAGCAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
........................................................A---------GCAACAGCAGCAGCAGCAACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000001000000000000000000000000000000000000000000000000
........................................................................................CA---ACA---ACAACAGCAGCAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................AGCA---ACA---ACAACAGCAGCAACAACAGC------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................AGCAGCAGCAGCAACAGCA---ACA---ACAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
.......................CAACAACAG-----------------------CA---------GCAACAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000100000000000000000000000
.......................................................................................................................................................................................................A------------------AC---------A-----------ACAGCAACAACAACAA............................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000100000000000000000000000000000000000000000000000
.................................................................................................................AACAGC------AGCAGCAACAACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................AGCAACAACAGC------AGCAGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................AACAGC------AGCAGCAACAACAACAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................GC------AGCAGCAACAACAACAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000010000000000000000000000000000000000
.............................................................................................ACA---ACAACAGCAGCAACAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................GCAGCAACAACAACAACAAC------AAC---------------------------AAC....................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................ACAACAGC------AGCAGCAACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000001000000000000000000000000000
.........................................................................CAGCAGCAGCAACAGCA---ACA---A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000001000000000000000000000000000000000000000000000
........................................................A---------GCAACAGCAGCAGCAGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
AG--CAGC----AGCAGCAGCAGCAGCAGCAA-----------CAGCAG------CA---------GCAGCAGCAGCAGCAGCAACAGCA---GCA---GCAACAACAGCAGCAACAGC------AGCAGCAACAGCAG---CAAC------AGC---------------------------AGCAACAGCAGCA--ACA---------GC------AAC---------A-----------GC---------AACAACAGCAGTAGCAGCAACAGCAGCAGCAGAAAC------AGCAG---------------CA---GC---------------------------------AG---CAGCAGCAGCA------------GCAACAG--C-----------------------------AGCAGCAGCAG------------------CAGCA---------------------------------ACAGCA-----------------------ACG---AC--AGAAAC----A------------ACAGCA---ACA------------------GCAGCTGC-----C-AC--AAATTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................CAGCAACAGCAG---CAAC------AGC---------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................19200.204400000
............................................................................CAGCAGCAACAGCA---GCA---GCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.153000030
........................................................................................................................................................................................................................................................................................................CAG---------------CA---GC---------------------------------AG---CAGCAGCAGCA------------GC.............................................................................................................................................................................................................................22200.102020000
...............................................................................................................................CAGCAACAGCAG---CAAC------AGC---------------------------AGC....................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102020000
....................................................................................ACAGCA---GCA---GCAACAACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102000020
..........................................................................................................CAGCAGCAACAGC------AGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102200000
................................................................................................................................AGCAACAGCAG---CAAC------AGC---------------------------AG.....................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102200000
............................................................................................................................................................................................................................................................................GCAACAGCAGCAGCAGAAA..............................................................................................................................................................................................................................................................................................................................19160.061100000
..........................................................................................................CAGCAGCAACAGC------AGCAGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
......................................................................................................ACAACAGCAGCAACAGC------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051100000
........................................................................GCAGCAGCAGCAACAGCA---GCA---GCAACAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051000010
....................................................................................ACAGCA---GCA---GCAACAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051100000
................................................................................................................CAACAGC------AGCAGCAACAGCAG---C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAG------------------CAGCA---------------------------------ACAGC................................................................................................................21200.051100000
............................................................................................................................................................................................................................................................................................................................................................................GCAGCA------------GCAACAG--C-----------------------------AGCA....................................................................................................................................................................................18200.051000010
...................................................................................AACAGCA---GCA---GCAACAACAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
.....................................................................................................................GC------AGCAGCAACAGCAG---CAAC------AGC---------------------------AG.....................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
........................................................................................................................................................................................................................................................................AGCAGCAACAGCAGCAGCAGAA...............................................................................................................................................................................................................................................................................................................................22200.051100000
.........................................................................................................................................................................................AACAGCAGCA--ACA---------GC------AAC---------A-----------GC---------A................................................................................................................................................................................................................................................................................................................................................................22200.051100000
................................................................................AGCAACAGCA---GCA---GCAACAACAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000010
...............................................................................................................................................................................................................................................................................................................................................................................GCA------------GCAACAG--C-----------------------------AGCAGCAGCAG------------------CAGC.......................................................................................................................................................26200.051000010
................................................................................................................................................................................................................................................................................................................................................................................................AACAG--C-----------------------------AGCAGCAGCAG------------------CAGCA---------------------------------ACA..................................................................................................................25200.051000010
.........................................................................................................ACAGCAGCAACAGC------AGCAGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
.........................GCAGCAA-----------CAGCAG------CA---------GCAGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000010
........................................................................GCAGCAGCAGCAACAGCA---GCA---GCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA------------GCAACAG--C-----------------------------AGCAGCA.................................................................................................................................................................................24200.051010000
.......................................................................................GCA---GCA---GCAACAACAGCAGCAACAGC------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................CAACAG--C-----------------------------AGCAGCAGCAG------------------C..........................................................................................................................................................19200.051000010
.....................................................................GCAGCAGCAGCAGCAACAGCA---GCA---GCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051000010
....................CAGCAGCAGCAA-----------CAGCAG------CA---------GCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA------------GCAACAG--C-----------------------------AGCAGCAGCA..............................................................................................................................................................................26200.051100000
............AGCAGCAGCAGCAGCAGCAA-----------CAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
............AGCAGCAGCAGCAGCAGCAA-----------CAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
...........................................................................GCAGCAGCAACAGCA---GCA---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000010
............................................................................................................................................................................................................................................................................................AAAC------AGCAG---------------CA---GC---------------------------------AG---CAGCAGCA..............................................................................................................................................................................................................................................23200.051100000
................................................................................................................................................AC------AGC---------------------------AGCAACAGCAGCA--ACA---------GC------AAC---------........................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
...............................................................................CAGCAACAGCA---GCA---GCAACAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000010
...............................................................................................................................................AAC------AGC---------------------------AGCAACAGCAGCA--........................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000
....................................................................................................CAACAACAGCAGCAACAGC------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010
.....................................................................................................AACAACAGCAGCAACAGC------AGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
droGri2
GA-GGAGG----AGCAATTGCCACAGCAACAA-----------CAACAACAACAGCA---------ACAACAACAGCAACAACAACAGCA---ACA---ACAACAGCAAC------------------AACAACAGCAACAACAAC------AGC---------------------------AACAACAACAGCA--ACAACAACAGCAACAACAACAGCAACAACAACA-----------GCAGC---------------------------------AAC------------AACAA---------------CA---GCAGC------------AACAA------------CAGCAGCAACAACA---------------GCAGGAG--C-----------------------------AA------------------------------------------------------------------C-----AGCG------------------------------------------------------------------------------------------------ATCGA-AT-GSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................AACA---------------GCAGGAG--C-----------------------------AA------------------------------------------------------------------C-----AGCG------------------------------------------------------------------------------------------------ATC.......2211.00101
..............................................................................................................................................................................................................................................................................................................................................................................A---------------GCAGGAG--C-----------------------------AA------------------------------------------------------------------C-----AGCG------------------------------------------------------------------------------------------------ATC.......1911.00101
....................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACA---------------GCAGGAG--C-----------------------------AA------------------------------------------------------------------....................................................................................................................2120.50110
..........................................................................................................................................................................................................................................................................................................A---------------CA---GCAGC------------AACAA------------CAGCAGCA....................................................................................................................................................................................................................................................21200.30660
.......................................................................................................................................................................................................................ACAGCAACAACAACA-----------GCAGC---------------------------------A.....................................................................................................................................................................................................................................................................................................................................21200.10220
..................................................................................................................................................................................................................................................................................................................................GC------------AACAA------------CAGCAGCAACAACA---------------...............................................................................................................................................................................................................................21200.05110
.................................................................................................................................................................................................................................................GCAGC---------------------------------AAC------------AACAA---------------CA---GCAGC------------AACA.........................................................................................................................................................................................................................................................................24200.05110
.................................................................................................................................................................................................................................................................................................................................................ACAA------------CAGCAGCAACAACA---------------G..............................................................................................................................................................................................................................19200.05110
droWil2
AG--CAAC----AACAACAGCAGCAACAACAA-----------------------CA---------GCAGCAGCAACAACAGCAACAGCA---ACA---ACAACAGCAGCAGCAACAGC------AACAGCAACAACAGCAGCAGC------AGC---------------------------AGCAACT--------GCA------ACAAC------AGC---------A-----------GCAGCAACAGCAACAGCAAC---------------------------------AA------------CATCAGCAGAAACAGC------------AACAA------------CAG---CAGCAACAGCA------------GCAACAG--C-----------------------------AA------------------------------------------------------------------CAA--CA---------------------ACACGA--------GATAG-AACATCAAGAGTGCCCATGGATGAG------------------GCCAAGAC-----C-GGCAT----TSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA--------GATAG-AACATCAAGAGTGCCCA...................................................2560.33202000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA--------GATAG-AACATCAAGAGTGCCC....................................................2460.33202000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-AACATCAAGAGTGCCCATGG................................................2260.17101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA--------GATAG-AACATCAAGAGTGCCCA...................................................2460.17101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-AACATCAAGAGTGCCC....................................................1860.17101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAG-AACATCAAGAGTGCCCATG.................................................2460.17101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------GATAG-AACATCAAGAGTGCCCATG.................................................2560.17100010
...................GCAGCAACAACAA-----------------------CA---------GCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.15300030
..................................................................................................................................................................................................................................................................................................................................................................................................CAG--C-----------------------------AA------------------------------------------------------------------CAA--CA---------------------ACACGA--------GAT.......................................................................20150.13202000
..............................................................................................................AGCAACAGC------AACAGCAACAACAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................28100.10101000
................................................................................AGCAACAGCA---ACA---ACAACAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10202000
............................ACAA-----------------------CA---------GCAGCAGCAACAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200002
..............................................................................................................................................................................................................................................................................................................................................................................AGCA------------GCAACAG--C-----------------------------AA------------------------------------------------------------------CAA--CA---------------------ACACGA--------GA........................................................................27140.07100010
...........................................................................................................................................................................................................................................................................................................................................................................AACAGCA------------GCAACAG--C-----------------------------AA------------------------------------------------------------------CAA--CA---------------------ACAC....................................................................................26140.07101000
.................................................................................................................................................................................................................................................................................................................................................................................................ACAG--C-----------------------------AA------------------------------------------------------------------CAA--CA---------------------ACACGA--------GAT.......................................................................21150.07101000
.........................................................................................................................................AGCAGCAGC------AGC---------------------------AGCAACT--------GCA------...............................................................................................................................................................................................................................................................................................................................................................................................................22170.06101000
.......................................................................................................................................................................................................A------ACAAC------AGC---------A-----------GCAGCAACAGC.................................................................................................................................................................................................................................................................................................................................................................21200.05101000
.................................................................................GCAACAGCA---ACA---ACAACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000
.............................................................................................ACA---ACAACAGCAGCAGCAACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
.............................................................................................ACA---ACAACAGCAGCAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
......................................................................................................................C------AACAGCAACAACAGCAGCAGC------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
................ACAGCAGCAACAACAA-----------------------CA---------GCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
................................................................................................................CAACAGC------AACAGCAACAACAGCAGCAGC------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.05100100
.............................................................................................................................AACAGCAACAACAGCAGCAGC------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
..................AGCAGCAACAACAA-----------------------CA---------GCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
...............................................................................................................................................................................................................CAAC------AGC---------A-----------GCAGCAACAGC.................................................................................................................................................................................................................................................................................................................................................................19200.05100001
......................................................................................................................C------AACAGCAACAACAGCAGCAGC------AGC---------------------------AG.....................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
......................................................................................................................C------AACAGCAACAACAGCAGCAGC------AG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
...................................................................................................................CAGC------AACAGCAACAACAGCAGCAGC------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
.........................................................................................A---ACA---ACAACAGCAGCAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100001
................................................................................................................................................................................................................AAC------AGC---------A-----------GCAGCAACAGC.................................................................................................................................................................................................................................................................................................................................................................18200.05100010
.......................CAACAACAA-----------------------CA---------GCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000
....................................................................................................................................................................................................................................................................................................................................................A------------CAG---CAGCAACAGCA------------GCAAC..........................................................................................................................................................................................................................20200.05100010
...............................................................................................A---ACAACAGCAGCAGCAACAGC------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
...................................................................................AACAGCA---ACA---ACAACAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
.............................................................................................ACA---ACAACAGCAGCAGCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
...........................AACAA-----------------------CA---------GCAGCAGCAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
...................................................................................AACAGCA---ACA---ACAACAGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
..............................AA-----------------------CA---------GCAGCAGCAACAACAGCAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100100
dp5
AG-GCA-T----TGCGTGTTGCACAGCAACAA-----------CAGCAACAACAACA---------GCAACAGCAACAACAGCAACA------------GCAACAACAACGGCAAC------------AGACACATCACCAT--GC---AACAGC------A---------AACA-------AGCAACA--------ACG------CCAAC------ATC---------ACAATTATCATCACAACAAC------------------------------AAC------------AACAA------------CAGCAATCACAGC------------AAATC------------AAG---CAGCCAT-----------------------------------------------------------------------------------------------------------CGAGGGCGTGCCACAAC--------CACC---ACACCAAATGCT--------------------------------GC-------------------------------CGCAGC---------TGG----ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................CAGCAACAACAACA---------GCAACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000100000
......................................................................CAGCAACAACAGCAACA------------GCAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000100000
..........................CAACAA-----------CAGCAACAACAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
....................................................CAACA---------GCAACAGCAACAACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
........................................................................GCAACAACAGCAACA------------GCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510100000000
..........................CAACAA-----------CAGCAACAACAACA---------GC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510010000000
droPer2
AA-GCAGT----ATCATCAGAAACAGCAA--------------------------CA---------ACAACAGCAGCTGCAGCAACATCA---GAA---GAAACAGCATCAGCAAGAGC------AGCTGCAGCAGCAG------C------AAC------AGCAGCAGCAAAAGCAGCAACAGCGACA--------GCA------GCAAC------AGC---------A-----------ACAGAAGC---AA---CAGC------------------AAC------------AGAAG---------CAACAGCA---ACAT------------------------------------CAGCAACA------------GCACCAGCAG----------------------------------------------------------------------------------CGCG--------------------T-----------------------------ACATAAGC----------------------A---ACACCACACGGCCTTGTTTGAGCCGCCCC-----C-CTACA----TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................AAC------AGCAGCAGCAAAAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................1940.502002000
.........................................................................................................................................................AC------AGCAGCAGCAAAAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................1860.171001000
........................................................................................................................................................AAC------AGCAGCAGCAAAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................1860.171001000
droAna3
CA-GTGGT----GCCGCCGGCAGCAACAGCGG-----------CTCTAA---CAGTACCA------GCAACAGCAACAGTAACACCAGCA---ATA---ATAATA---CC------------------AACATTAACAACAACAAC------AAC---------------------------AACAACAACAATA--ACAACAACAGCAGC--------------------------------------AACAACAACAAC---------AGCAGCAGCAAC------------AACAG---------CAACAGCGGCGAAAAT------------AATGGTGGAAGCAACAGCAGCAGCAACAACA---------------------G--C-----------------------------AA------------------------------------------------------------------CAC--CG---------------------AC----AT--GGAAAC---GG-----------ACCAGCT---GTG------------------CATCTACT-----C-GGCCA----GSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................ACAG---------CAACAGCGGCGAAAAT------------AATGGT.......................................................................................................................................................................................................................................................................2611.001010000
..............................................................................................................................................................................................................GCAGC--------------------------------------AACAACAACAAC---------AG.............................................................................................................................................................................................................................................................................................................................................19200.102000002
.......................................................................................................................................................................................................AACAACAGCAGC--------------------------------------AACAACAACAAC---------...............................................................................................................................................................................................................................................................................................................................................24120.081001000
........................................................................................................................................................................................................ACAACAGCAGC--------------------------------------AACAACAACAAC---------...............................................................................................................................................................................................................................................................................................................................................23150.071100000
..................................................................................................................................................................................................A--ACAACAACAGCAGC--------------------------------------AACAAC..............................................................................................................................................................................................................................................................................................................................................................21180.061100000
..............................................................................................................................................................................................................................................................................AGCAGCAGCAAC------------AACAG---------CAACAGC..................................................................................................................................................................................................................................................................................................24200.051010000
...........................................................................................................................................CAACAAC------AAC---------------------------AACAACAACAATA--........................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
...............................................................................................................................................................................................................CAGC--------------------------------------AACAACAACAAC---------AGCAGC.........................................................................................................................................................................................................................................................................................................................................22200.051010000
................................................................................................................................................................................................................AGC--------------------------------------AACAACAACAAC---------AGCAGC.........................................................................................................................................................................................................................................................................................................................................21200.051000001
..........................................................................................................................................................................................................................................................ACAACAACAAC---------AGCAGCAGC......................................................................................................................................................................................................................................................................................................................................20200.051010000
droBip1
CG-GCTGC----AGCAGCAGCAGCAACAGCAG-----------TATCAG---------------------CAGCTGCAGCAGCATCAACA---ACT---GCAGCAGCATCAACAACAGCAACAGCATCAACAACAGCAG---CAGC------ATC---------------------------AACAACAGCAGCA--TCAACAACAGCAAC-----------------------------------------AG---CATCA---GCAACTGCAGCAGCATCAGCAACAGCAACAGCAT------CAACATCAGCAGCA---TC------------AACAA------------CAGCAGCAACATCAA-------------------------------------------------------------------------------------------------------------------------CAACA-----------------------TC-------------------------------------------------------------------------------------GSizeHit CountTotal NormTotal
No Reads
droKik1
AG--CAGC----AGCAGCAGCATCAACAGCAG-----------------------CC---------GCCACAGCAGCAGCAGGCACAGCA---AAC---GCAACAGCTGCAGCAACAGG------AGCCACAGCAGCAG------C------AAC---------------------------AGCAAG---GCGACAAAA------GTAAAAGT---AAT---------G-----------TC---------ATCAACAAT---------------------------------GA------------T-----------GTTC------------AAGTT------------AAGAATAATCACCA-----------------------------------------------------------------AATAATAAGCCAAACCGG------------------CAACAAGAAAAC-GGATGCAG--------------CGGCAACAAA-------------------T---GA-----------ACCAAGC---ACT------------------GACACTAG-----C-TTCCT----GSizeHit CountTotal NormTotal
No Reads
droFic1
CA-GCA-------GCAATCGCAGCAGCAGCCG-----------------------CA---------GCAGCAACAGCCGCAGCGCCAACA---TCACCAGCTACTGCAGC------------------AGCAAAAACTGCAGCAGC------CGCAGCAGCAGCAACGACAGCAGCAGCAACAGCAGCA--------GCG------GC---------------------C-----------GCAGCAGC------------------------------AAC------------AGCAG------------CAGCAGCCGCAGC------------AGGAG------------------CG------------------------CAAG--C-GCAAGG--------TCGGCGCGGAAGGCCGCGGC-----------------------CGGCGGCAACAGCCAGGG---------G----------------CG---------------------AA----AT--G--------GA-----------GGCGGCG---GCG------------------CTCGTCGTCGC--CGCTCCA----GSizeHit CountTotal NormTotal
No Reads
droEle1
AG--CATC----AGCAGCATCAACAACATCAG-----------------------CA---------GCATCAGCAACACCAGCAACACCA---GCA---GCAGCAACAGCACCAACAGCAGC---ATCAGCAACACCAGCAGCAGC------ACC---------------------------AGCAACA--------TCA------GCAGC------ATC---------A-----------ACAGCAGC---AT---CAGC------------------AAC------------ATCAG---------CAGCATCAGCAACACC------------AG---------------------CAGCTTCAGCAGCAGCAGCAGCAGCAACAGGGTGGCAATGGTCCCGTC-------------------------------------------TC--------------------------------------------------CCAGCAACAAATGGT--------------------------------GCCAGTCAGCGTG------------------GCTGCTGC-----C-TTGCA----GSizeHit CountTotal NormTotal
No Reads
droRho1
AA--CAAC----AGCAGCAGCAACAACAGCAG-----------------------CA---------GCAACAACAACAGCAGCAGCAACA---ACA---GCAGCAGCAACAACAACAGC------AGCAGCAACAACAACAGCAGC------AGC---------------------------AACAACA--------GCA------GCAGC------AAC---------A-----------ACAGCAGC---AA---CAGC------------------AAC------------AACAA---------CAACAGCAGCAACAGC------------AACAA------------CAA---CAACAGCAGCT------------GCAACAA--C-----------------------------AACATCA----GGTC-------------------------------------------T-TGG-------------C----ACAGCA-----------------------ACAAC-CTCAG------------C----------------CTGGACAA-CAAGTCAT-----C-ACCCA----GSizeHit CountTotal NormTotal
No Reads
droBia1
AA--CAGC----AGCAGATCCAGCAACAACAG-----------------------TT---------GCAACACCAACAGCAGCTGCAGCA---GCA---ACAACAGCAGCAGCAACAGC------AGCAACAACAACAACAGCAGC------AGC---------------------------AAAAACA--------ACA------GCAAC------AAC---------A-----------ACAACAACAGCAG---CAGC------------------AGC------------AG------------CAACAGCAGGTGCAGC------------AACAA------------CAA---CAGCAACAACA------------GAT--------------------------------------------------------------------------------------------------------------------------------------------C-----------A-----------TTCAGCA---GCAGACCACTGCCTCAGCTA-CAT----CCACTCT-GTCGG----ASizeHit CountTotal NormTotal
No Reads
droTak1
GC---AAC----ACTAGCAAAGGC--TAGCAA-----------AAC---------CA---------CAAGCAGGACAAGCAGCAACAGCA---GCA---GCGACAGCAGCAGCGACAGC------AGCAACATCAACAGCAACATCAAC---AAC---------------------------ATCAGCAACAACA--GCAGCAGCGGC-----------------------------------------AGCAACACCGGC---------------------------------AA------------CAGCAAC---AGCAATACT---------AGCGA------------CAGCAGCAACACCAGCA---------------CCACCACGACGCTGTACACGTG-------------------------------------------CT--------------------------------------------------CCA--------------------------GC---GC-----------CTCCTCG---TCG------------------CTGATTGC-----C-CAGCC----GSizeHit CountTotal NormTotal
No Reads
droEug1
CA-CCA-------GCAGCATCAGCAACAGCAG-----------------------CA---------CCAGCAGCAACAACAGCAACAACATCAGCA---ACAACAGCATC------------------AGCAGCAACAACACCACC------AGC---------------------------AGCAGCAACACCA--CCAACAGCAGCAAC------ACC---------A-----------CC---------AA---CAGC------------------AAC------AACATCTACAA------------CAGCAGCAGCAGC------------AACAC------------CAG---CAGCAGCAGCA------------GCAACAT--C-----------------------------AA------------------------------------------------------------------C-----AACT----CA---------------CGA--------GCAAC-ATGAGCATGTTGACCGTTAAAGGCG------------------GTCGTTAC-----C-TTTGG----ASizeHit CountTotal NormTotal
No Reads
dm3
GG--CGGCATTCACCAGCAGCATCA---GCAG-----------------------CAGCAACACCAGCAGCACCAGCAGCAGCAACACCA---GCA---GCAGCAGCACC------------------AGCAACACCAGCAGCAAC------AGC---------------------------AGCAGCAACACCA--ACATCAGCAGCAGC------AAC---------A-----------GC---------AACACCTTCA---------------------------------G------------CAGCAGC---AACACCACCAGCTGCAGCAGCAA------------CAG---CAGCAGCA---------------GCAGCAT--C-----------------------------AA------------------------------------------------------------------C-----AACT----CG---------------CCA--------GCAAC-ATGAGCCTGCTGACCGTCAAAGGCG------------------GCCGTTAC-----C-TTTGG----ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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droSim2
AG--CACC----AGCAACATCACCACCAACAG-----------------------CA------GCAGCAGCAGCATCAACA------------------GCAACAGCAGCAGCAACAGC------ATCAGCAGCAGCAG------C------AGC------AGCAACATCAACAGCAGCAACATCAACA--------GCA------GCAAC------ACC---------A-----------ACAGCAGC---AA---CAGC------------------AAC------------AGAAG---------CAGCTCCA---GC---------------------------------AG---CAGCAGCA------------GCATCAATGG--------------------------------AGCGGCAACAA------------------CGGCAGCAGCAACCAAAG---------GAG-CA--A---C-----AACTATGCCA--------------------------ACAACTA-----------TGCGGCG---GCA------------------GCCGCTGC-----C-TCC-------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................ATGG--------------------------------AGCGGCAACAA------------------CGGCAGT....................................................................................................................................................2211.00100000000000001000
...............................................................................................................GCAACAGC------ATCAGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.20100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA------------------CGGCAGCAGCAACCACC..........................................................................................................................................2290.11100000000000100000
.......................................................................................................................................................................................................................................................................................................................CTCCA---GC---------------------------------AG---CAGCAGCA------------GC................................................................................................................................................................................................................................19180.06100000000000100000
................................................................................................................................AGCAGCAGCAG------C------AGC------AGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000001000000
.......................CACCAACAG-----------------------CA------GCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05110000000000000000
................................................................................A------------------GCAACAGCAGCAGCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000000100000
droSec2
AG--GAGT----ACCAACAGCATCAGCAGCAC-----------------------CA---------GCAACAGCACCAGCAGCATCAGCA---ACA---TCAGCAGCACCAGCAGCATC------AGCAACAGCAGCAC------C------AAC---------------------------AGCATCA--------GCAACATCAGCAGCAGCAGCATC---------A-----------GCAGCAGC---AC---CAGC------------------AAC------------ATCAG---------------CAGCA---CC------------AACAA------------CACCAGCAGCATCAGCA---------------GCAGGGTGGCGGTGGGCCTGTC-------------------------------------------TC--------------------------------------------------CCAGCAGCAAATGGT--------------------------------GCCGGTCAGTGTG------------------GCGGCTGC-----C-TTCCA----GSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................CAG---------------CAGCA---CC------------AACAA------------CACCAGCAGCAT................................................................................................................................................................................................................................................2711.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAGTGTG------------------GCGGCTGC-----............1811.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGTGGCGGTGGGCCTGTC-------------------------------------------TC--------------------------------------------------CCAG...................................................................................................2811.0010010
...........................................................................................................................................................................................................................C---------A-----------GCAGCAGC---AC---CAGC------------------AAC------------.......................................................................................................................................................................................................................................................................................................................19160.0610010
...............................................................................................................GCAGCATC------AGCAACAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18160.0610010
............................................................................................................................................................................................................CAGCAGCAGCAGCATC---------A-----------GCA.........................................................................................................................................................................................................................................................................................................................................................................20200.0510010
............................................................................................................................................................................................A--------GCAACATCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................18200.0510010
droYak3
GTAGCAAT----ACCAT---G-ACGACAACAATAAGCAAGCAGGAGCAG---CAGCA---------GCAGCAGCAGCAACAGCAGCATCA---GCA---GCAGCAGCAGC------------------AGCAACAACAGCAGCAAC------AGC---------------------------AGCAACAGCAGCA--ACAACAGCAGCAACAGCAGCAGCAACAGCAGCA-----------GCAGC---------------------------------AAC------------AACAGCAGCAGCAACATCAGCAGTATGTGC------------AACTA------------CAGCAGCAACATTT-----------------------------------------------------------------GGTGAC-----------------------------------------------------------------CA--------------------------GC---GA-----------TTCGGCG---GCA------------------GCTGTTCC-----C-ATCCC----GSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
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........................................................A---------GCAGCAGCAGCAACAGCAGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23100.10100000010000
..............................................CAG---CAGCA---------GCAGCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200020000000
...........................................................................................................................................................................................................GCAGCAACAGCAGCAGCAACAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................26200.10202000000000
...................................................................................................................................................................................................................................GCA-----------GCAGC---------------------------------AAC------------AACAGCAGCA.............................................................................................................................................................................................................................................................................................................21200.10202000000000
................................................................................AGCAGCATCA---GCA---GCAGCAGCAGC------------------AGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27110.09101000000000
......................................AGCAGGAGCAG---CAGCA---------GCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25110.09101000000000
............................................................................CAACAGCAGCATCA---GCA---GCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23120.08100000010000
.......................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAACATCAGCA.................................................................................................................................................................................................................................................................................................21150.07101000000000
........................................................................................................................................................AGC---------------------------AGCAACAGCAGCA--ACAACAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................27150.07100100000000
................................................................................................................................................................................................GCA--ACAACAGCAGCAACAGCAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................27180.06101000000000
...........................................................................................................................................CAGCAAC------AGC---------------------------AGCAACAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100000000
...........................................................................GCAACAGCAGCATCA---GCA---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05101000000000
.......................................................................................................................................................................................................................GCAGCAACAGCAGCA-----------GCAGC---------------------------------AAC------------A......................................................................................................................................................................................................................................................................................................................24200.05101000000000
.........................................AGGAGCAG---CAGCA---------GCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
..........................................................................................................................................................................................................................GCAACAGCAGCA-----------GCAGC---------------------------------AAC------------AA.....................................................................................................................................................................................................................................................................................................................22200.05101000000000
.....................................................AGCA---------GCAGCAGCAGCAACAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
....................................................................................................CAGCAGCAGC------------------AGCAACAACAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000001
...............................................................................................................................................AAC------AGC---------------------------AGCAACAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010000000
......................................................................................ATCA---GCA---GCAGCAGCAGC------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010000000
................................................................................................................................................................................................................................GCAGCA-----------GCAGC---------------------------------AAC------------AACAGCAG...............................................................................................................................................................................................................................................................................................................22200.05101000000000
.......................................................................................TCA---GCA---GCAGCAGCAGC------------------AGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000000001
.................................................................................................................................................................................................................................................GCAGC---------------------------------AAC------------AACAGCAGCAGC...........................................................................................................................................................................................................................................................................................................20200.05100100000000
droEre2
AG--CAGC----AGCATCAGCAGCAGCAGCAG-----------------------CA---------GCATCAACAGCAGCAGCAGCAGCA---ACA---GCAGCAACAGCAGCAACAGC------AGCAGCAGCAACAACAGCAAC------AGC---------------------------AGCAGCAGCAACA--GCA------GCAGC------ATC---------A-----------ACAGCAAC---AG---CAGCA---ACAGC---------AAC------------AGCAG------------CAGCAGTTGCAGC------------CACAA------------CAG---CAGCTGCAGCC------------GCAACAG--C-----------------------------AGCAGCAGTTA------------------CAGCT---------------------------------GCAGCA-----------------------GC------------------------------------------------------------------------------C-AAATGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................GCAACAG--C-----------------------------AGCAGCAGTTA------------------CAGCT---------------------------------GCA..................................................................................................................2711.0011000000
................................................................................................................................................................................................................................................................................................................................................CACAA------------CAG---CAGCTGCAGCC------------GCA............................................................................................................................................................................................................................2211.0010000100
.....................................................................................................................................................................................................................................................................A---ACAGC---------AAC------------AGCAG------------CAGCAGTT..............................................................................................................................................................................................................................................................................................2220.5010001000
.........................................................................................................................................................................................................................................................................ACAGC---------AAC------------AGCAG------------CAGCAGTT..............................................................................................................................................................................................................................................................................................2120.5010000010
.......................................................................................................................................................................................................A------GCAGC------ATC---------A-----------ACAGCAAC---A................................................................................................................................................................................................................................................................................................................................................................1930.3310000100
...............................G-----------------------CA---------GCATCAACAGCAGCAGCAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.2510100000
............................................................................................................GCAGCAACAGC------AGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1531000020
.G--CAGC----AGCATCAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1022000000
........................................................................................................AACAGCAGCAACAGC------AGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002000
....................................................................................................CAGCAACAGCAGCAACAGC------AGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1021000100
.....................................................................................................................................................................................................................................................................A---ACAGC---------AAC------------AGCAG------------CAGC..................................................................................................................................................................................................................................................................................................18200.1020000020
.................................................................................................................................GCAGCAACAACAGCAAC------AGC---------------------------AGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................24120.0810000010
.....................AGCAGCAGCAG-----------------------CA---------GCATCAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22120.0811000000
...................................................................CATCAACAGCAGCAGCAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22160.0610001000
...................................................................................................................................AGCAACAACAGCAAC------AGC---------------------------AGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................22160.0610000010
...........................................................................................................................................................................................................................................................................AGC---------AAC------------AGCAG------------CAGCAGT...............................................................................................................................................................................................................................................................................................18190.0511000000
....CAGC----AGCATCAGCAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000010
....................................................................................................................................GCAACAACAGCAAC------AGC---------------------------AGC....................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000
....................................................................................GCAGCA---ACA---GCAGCAACAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000100
.....................................................................................................AGCAACAGCAGCAACAGC------AGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0511000000
.....................................................................................................AGCAACAGCAGCAACAGC------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000100
...................................................................................................................................................................................................................................................AGCAAC---AG---CAGCA---ACAGC---------A.....................................................................................................................................................................................................................................................................................................................................19200.0510000100
.......................................................................................................................................ACAACAGCAAC------AGC---------------------------AGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000
................................................................................................................................................AC------AGC---------------------------AGCAGCAGCAACA--GC......................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000
..............................................................................................................................................CAAC------AGC---------------------------AGCAGCAGCAACA--GCA------...............................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000010
...............................................................................................................................................AAC------AGC---------------------------AGCAGCAGCAACA--GCA------GCA............................................................................................................................................................................................................................................................................................................................................................................................................25200.0510001000
....................................................................ATCAACAGCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010
..............................................................................GCAGCAGCAGCA---ACA---GCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0511000000
...............................................................................................A---GCAGCAACAGCAGCAACAGC------AGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0511000000
.......................................................................................................................................................................................GCAGCAGCAACA--GCA------GCAGC------A...................................................................................................................................................................................................................................................................................................................................................................................................21200.0510001000
.....................................................................................................................................CAACAACAGCAAC------AGC---------------------------AGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510001000
..............................................................................................................AGCAACAGC------AGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510001000
...................................................................CATCAACAGCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000010
.......................................................................................................................................................................................................................................................AC---AG---CAGCA---ACAGC---------AAC------------AGC....................................................................................................................................................................................................................................................................................................................20200.0510100000
................................................................................AGCAGCAGCA---ACA---GCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510001000
.......................................................................................................................................................................................GCAGCAGCAACA--GCA------GCAGC------....................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000
...............................................................................................................................................AAC------AGC---------------------------AGCAGCAGCAACA--GCA------GC.............................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000010
.....................................................................................................................................CAACAACAGCAAC------AGC---------------------------AGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000
..........................................................................AGCAGCAGCAGCAGCA---ACA---GCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000
......GC----AGCATCAGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100
............................................................................................................GCAGCAACAGC------AGCAGCAGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0511000000
..............CATCAGCAGCAGCAGCAG-----------------------CA---------GCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510001000
.............GCATCAGCAGCAGCAGCAG-----------------------CA---------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000010
...............................................................................................................GCAACAGC------AGCAGCAGCAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000010
...........................................................................................................................................CAGCAAC------AGC---------------------------AGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000
.....................................................................................................................................CAACAACAGCAAC------AGC---------------------------AGC....................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000000
.........................................................................................................ACAGCAGCAACAGC------AGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000100
.....................................................................................CAGCA---ACA---GCAGCAACAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0511000000
.................................................................................................................................................C------AGC---------------------------AGCAGCAGCAACA--GC......................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010
.............................................................................................................CAGCAACAGC------AGCAGCAGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000
........................................................................................................................................CAACAGCAAC------AGC---------------------------AGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510001000
.G--CAGC----AGCATCAGCAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000

Generated: 05/17/2015 at 03:44 AM