ID:

dvi_8376

 Coordinate:

scaffold_12928:1086114-1086264 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.2

Flybase annnotation

exon [dvir_GLEANR_17266:3]; CDS [Dvir\GJ16760-cds]; intron [Dvir\GJ16760-in]

Repeatable elements

NameClassFamilyStrand
(TA)nSimple_repeatSimple_repeat+
mature
star
  1. scaffold_10324:518788-518808 +
  2. dvi_23091  scaffold_12822:3054842-3054862 +
  3. scaffold_12855:3255802-3255822 +
  4. dvi_24377  scaffold_12875:11641573-11641593 +
  5. scaffold_12875:12930373-12930393 +
  6. dvi_8376  scaffold_12928:1086219-1086239 +
  7. scaffold_12928:5220157-5220177 +
  8. scaffold_12928:5844101-5844121 +
  9. dvi_23367  scaffold_12928:7405333-7405353 +
  10. scaffold_12928:7405531-7405551 +
  11. scaffold_12963:13284421-13284441 +
  12. scaffold_12970:2331340-2331360 +
  13. scaffold_12970:10311309-10311329 +
  14. scaffold_13042:266569-266589 +
  15. scaffold_13042:624508-624528 +
  16. scaffold_13042:2834819-2834839 +
  17. scaffold_13047:6639771-6639791 +
  18. scaffold_13049:43917-43937 +
  19. scaffold_13049:3623895-3623915 +
  20. scaffold_13049:20188585-20188605 +
  21. scaffold_10324:382617-382637 +
  22. scaffold_12855:2672824-2672844 +
  23. scaffold_12855:3558258-3558278 +
  24. dvi_23332  scaffold_12875:5435111-5435131 +
  25. scaffold_12875:10498967-10498987 +
  26. scaffold_12875:19833445-19833465 +
  27. scaffold_12932:1377246-1377266 +
  28. scaffold_12963:4409669-4409689 +
  29. scaffold_12963:11300107-11300127 +
  30. scaffold_12963:18943422-18943442 +
  31. scaffold_12970:5997943-5997963 +
  32. scaffold_12970:10944745-10944765 +
  33. scaffold_13042:2867018-2867038 +
  34. scaffold_13042:3288128-3288148 +
  35. scaffold_13042:4155930-4155950 +
  36. scaffold_13047:1018917-1018937 +
  37. scaffold_13047:6612343-6612363 +
  38. scaffold_13049:2909974-2909994 +
  39. scaffold_13049:14977863-14977883 +
  40. scaffold_13049:17404818-17404838 +
  41. scaffold_12822:1778669-1778689 +
  42. scaffold_12855:1878987-1879007 +
  43. scaffold_12855:2496589-2496609 +
  44. scaffold_12875:1288015-1288035 +
  45. scaffold_12875:1358417-1358437 +
  46. scaffold_12875:14930983-14931003 +
  47. scaffold_12875:19974758-19974778 +
  48. scaffold_12875:20502210-20502230 +
  49. scaffold_12928:4917132-4917152 +
  50. scaffold_12932:503655-503675 +
  51. scaffold_12963:2419967-2419987 +
  52. scaffold_12963:4117555-4117575 +
  53. scaffold_12963:13145269-13145289 +
  54. scaffold_12970:9653502-9653522 +
  55. scaffold_12970:10510396-10510416 +
  56. scaffold_13047:16837285-16837305 +
  57. scaffold_13049:1600091-1600111 +
  58. scaffold_13049:1925351-1925371 +
  59. scaffold_13049:17820093-17820113 +
  60. scaffold_13246:532446-532466 +
  61. scaffold_10324:1114407-1114427 +
  62. scaffold_12726:472120-472140 +
  63. scaffold_12822:2325711-2325731 +
  64. scaffold_12855:4131844-4131864 +
  65. scaffold_12875:16350070-16350090 +
  66. scaffold_12928:54873-54893 +
  67. scaffold_12928:3714124-3714144 +
  68. dvi_8954  scaffold_12928:4957330-4957350 +
  69. scaffold_12928:6633411-6633431 +
  70. scaffold_12963:5107181-5107201 +
  71. scaffold_12970:6911863-6911883 +
  72. scaffold_12970:10964002-10964022 +
  73. scaffold_13042:824498-824518 +
  74. scaffold_13049:1635428-1635448 +
  75. scaffold_13049:1962034-1962054 +
  76. scaffold_13049:3427603-3427623 +
  77. scaffold_13049:10277546-10277566 +
  78. scaffold_12726:1801168-1801188 +
  79. scaffold_12823:524547-524567 +
  80. scaffold_12875:11510351-11510371 +
  81. scaffold_12875:11956520-11956540 +
  82. scaffold_12928:2172537-2172557 +
  83. scaffold_12928:4141152-4141172 +
  84. scaffold_12928:5245768-5245788 +
  85. scaffold_12932:895169-895189 +
  86. scaffold_12963:18810761-18810781 +
  87. scaffold_12970:1775733-1775753 +
  88. scaffold_12970:8181081-8181101 +
  89. scaffold_12970:8335462-8335482 +
  90. scaffold_12970:10651552-10651572 +
  91. scaffold_13042:4945645-4945665 +
  92. scaffold_13047:1675279-1675299 +
  93. scaffold_13047:8022236-8022256 +
  94. scaffold_13047:9393212-9393232 +
  95. scaffold_13047:15400609-15400629 +
  96. scaffold_13049:239728-239748 +
  97. scaffold_13049:4192940-4192960 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GACGCTTTCTGTTTACCTTTGACTCTATCGACTGAATTACTGATAAGTGTAAATTGCATGAAATGTGTGGAAATCTGACTCAGCCTTCGTATCGCTGATTGCGTATTTGTATATATACTCATCTATATATATATATATACATATACATATATATATATATATATATATGTGTGTGTGTGTGTGTGCATATCGTTTATATAGGGCTCTACGTGCGCGCTGACCGAATCGATATTGCGGCAATATGGCGCACG
***********************************************************************************************************************************************************(((((((((((((....))))))))))))).............***************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 M061
embryo
 SRR060684
140x9_0-2h_embryos_total
 SRR1106730
embryo_16-30h
 M047
female body
 SRR060665
9_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060664
9_males_carcasses_total
 M028
head
 SRR060654
160x9_ovaries_total
 SRR060667
160_females_carcasses_total
 V047
embryo
.........................................................................................TATCTCTGATTGCGTATTT............................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGACCGAATCGATATTGCGGC............. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GTGCATATCGTTTATA..................................................... 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................ATCGTTTATATAGGGCTCTACGT........................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CGCGGGCTCTACGTGCGCGC.................................. 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GAGCTTTATGTGCGCGCTGAC.............................. 21 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................TATCTCTGATTGCGTATTTGAAT........................................................................................................................................... 23 2 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0
......................................................TGACTGAAATGTGTAGAAATC................................................................................................................................................................................ 21 3 14 0.14 2 0 0 0 0 0 2 0 0 0 0 0 0
........................................................................................GCATCGCTGTTTGCGTATT................................................................................................................................................ 19 2 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................TGTGTGTGTGTGCATATC............................................................ 18 0 18 0.11 2 0 0 0 0 1 0 0 0 1 0 0 0
...........................................................................................................................................................TATATATATATATGTGTGTGT........................................................................... 21 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0
.................................................................................................ATTGCGTATTTTCATACATAC..................................................................................................................................... 21 3 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................TATTTCTGATTGCGTATTT............................................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................TTGTGTGGAAATCTGTCT........................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................ATATATATATGTGTGTGT........................................................................... 18 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TATCACTGATTGCTTATTTG.............................................................................................................................................. 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................ATATATATATATATGTGTGT............................................................................. 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................ATATATATATATATATGTGT............................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CTGCGAAAGACAAATGGAAACTGAGATAGCTGACTTAATGACTATTCACATTTAACGTACTTTACACACCTTTAGACTGAGTCGGAAGCATAGCGACTAACGCATAAACATATATATGAGTAGATATATATATATATATGTATATGTATATATATATATATATATATACACACACACACACACACGTATAGCAAATATATCCCGAGATGCACGCGCGACTGGCTTAGCTATAACGCCGTTATACCGCGTGC
*****************************************************(((((((((((((....))))))))))))).............*********************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060665
9_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060673
9_ovaries_total
.................................................................................................TAACGCATAAAAGTATGTATG..................................................................................................................................... 21 3 17 0.06 1 1 0 0
...........................................................................................................................................................................................ATAGCAAATAGATTCCCAG............................................. 19 3 17 0.06 1 0 1 0
.............................................................................................................................ATATATATATATCTGTATAGGTATA..................................................................................................... 25 2 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:1086064-1086314 + dvi_8376 GACG-CTTTC-------------------------------------------------------TGTTTACCT--TTGACTC--TATCGACTGA--------A-------TTACTGATAA---------------------GTGT---------------------AAATT--------------------------------G---------------------------C---------------------------------------------------------------------------------------------ATGAA--------------------------------------------------------------------------ATGTGTGGAAATCTGACTCAGC-CTTCGTATCGCTGATTGCGT-----------------------------ATTTGTATATATACT--------CATCTA--TATATAT----------ATA---------------------------------------TAT------A--C----ATATACATAT--A---------T----------A--TATAT----------------ATATATATATGTG----TGTGTGTGTGT-------------GTGC---------ATAT------------CGTTTA--TA----TAGGGCTCTACGTG------CGCGCTGACCGAATCGATATTGCGGCAATATGGCGCACG-
droMoj3 scaffold_6680:16902394-16902597 + TCTC-------------------------------------------------------------CATGTGCAT--TCGATTT------------------------------------ATATGTACATATTTATTGTATAAATA----------------------------------------------------------------------------------TGAAATACTGAAATGGGAAACACT----------------------------------------TGCGTCGTTTGC---------TCTACAGC---------AGATG----------TATATATGTATA----------------TA--TGT------------ATGTA--------------------------------------------------------------------------------------TG----TA-----TAT-----ATG--TAT----------ATATGTCTA-------------------------------------------------T----ATGTATA--TATGT-------ATA--TA--------TATAT----------------GTATATATGTA----TATATGTATATATGTATAT--A------------------------TGTA---------TA--T----AT---------------------------------------------------------GT
droGri2 scaffold_14624:3245333-3245513 + GGAG-CTCTCCTTTCCAGCTAGCAT------------------------------------------------------------------TTGA---AATGC----------------------------------------------------------------------TGTTAACCTCGT-------------------------------------------T------T-------------------------------------------------------G----------AACTTTGCCATTTGTTTTTGAGCCATTAG--------------------------------------------------------------------------ATGGGCT-----------------------------------------------CGCATCTCTCTTTGGGCAATTTAAATATATA------------------TACATAT----------ATA---------------------------------------TATATATATATAT------ATA--TATA-----------------------TATATATATATATATAT------------AT---------TGTGTG--------------------------------------TGTG---------TG--T----GT---------------------------------------------------------AT
droWil2 scf2_1100000004909:1858511-1858742 + TTTC-------------------------------------------------------------TGTTTTCAT--TTACTTC--ATTCGTTTCATTT-----A-------TTAATGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------A--------------------------GA----TTGCGTTTGGCTTGTTTATGTACCGCCCTCCCGCCCCCC-----------------------TTTCGTGTCTGTTC-------------GTCT----------------------CTC--TGT--------------CTC--------TCCGGCTATGATTGTGAAATAAACTAATGTATATAGATTCTATA------TCA--TTT--G---------------------CATTTTTGCTTTTATTA------------------------------------------------------------------------------------------AAGGGCTCTACATG------CGCTTTAGCTGAATCTCTATTGCGACATCATGGTGCCCA-
dp5 2:14416068-14416269 + TGTG-TGT------------------------------------------------------------CTGTTT--GTTGTTG--TTTTGTTTTA---AACGC----------------------------------------------------------------------TTTTTAAATTGCACATTGATATTTTAATATTTTGTAAATATTAAACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTTCGTTT----------------TTCACTTTTTTGCTTGCTAATTTATTTGGACTATATATAT------TCAT--------A--TATATATAT----------ATA---------------------------------------TATACACACATAT------ACG--TATA-----------------------TATA--------------------------------------T----------ATAT--A---------------TG-TA---T---ATATTTGTTTTA--TG-------------------------------------------------------------TA-
droPer2 scaffold_12497:261-441 + ACCGATTG-----------------------------------------------------------------------------------------------A-------TGAATAAGGGT---------------------TGT---------------------AGATT--------------------------------G---------GAAAATTGGATTGGAGACCTGAT------------------------------------------------------C--------------------------------------------GATCTGTTCATATATTTAAA----------------TA-------------------------------------------------------------------------T-----------------------------ATTTATAT------------------TTA--TATATATATATATATATATA---------------------------------------------TACA--T----ATATATATAT--ATCAAGTTCGT-GT-ATATGTA--TATAT----------------ATATACGTATATG----TGCGTGTGTGT-------------GT---------------------G---------TG--C----GT--------------------------------------------------------CG-
droAna3 scaffold_13335:1813314-1813524 - AATA-TTAT---------------------------------------------------------ATTTTAATTTTTG------GTTTGTTTAA--------A-------TTCTTCTTAA---------------------TTAC---------------------AACAA--------------------------------G---------------------------CAGCAAATCAATAAAAACTTT-T--TAT-------------------------------TC--------------------------------------------AGTCGCATATCTAACAAAAAAAACCCATATTTATATATAA---------------TGTT--------------------------------------------------------------------------------------TT----TA-----TAT-----ATA--AATATCT-------CATATA---------------------------------------------------TATATTTTTGTATAT--A---------T----------A--TATAT----------------ATATATGTTTGTG----TGTGTATTTGT-------------GTGT---------GTGT------------TGTGTG--TA-------------------------------------------------------------TA-
droBip1 scf7180000396740:533722-533915 + TTTC-CGC-----TGCTATTGCCACTGAATTTTCTACTGGCTCAGTGTCAAGCCCATCGGGAGCG---CTA--------------------------------A-------TTGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATCGAT------------------A--------------------------GAGCACTGTAGGCTTA-----------------------------------------------CAT-----------------------------ATTTATATATATA--------TAAACAGA--TATATAT----------ATA---------------------------------------------TATA--TATATATATATATAT--A---------T----------G--AAGAG----------------ATGTATACGTA----TGT-TAAGTGTAG-------------GCAT-----------ATACT---A---------TA--T----AT---------------------------------------------------------AG
droKik1 scf7180000302621:166079-166252 + TTGT-------------------------------------------------------------TGTTGAAAT--TAAGCTT-T------------------------------------------------------------TGGATTCG---ATCTGACAGGTGAATCA------A--------------------------------------------------------------------------------------------------------------------------------------------------ATGGAATA----------TATATGCGTACA----------------TA--ATTGTT--TTATTCGC-TTCTA-----------------------------------------------TAT-----------------------------ATGTATATAT----------------ATA--CAT--------------GCA--------TAAGGTT---------------------------A--------A----A----CA--C-----------AC-AC-ATATATATATACAT------------------------ATA----TATATATATGTGT--------ATA-----TATATATA----------------------TA--TA-------------------------------------------------------------TA-
droFic1 scf7180000454039:706036-706213 + AGAT-TTT------------------------------------------------------------CT------------------------------------------------TGC----------------------------------------------------ATTTAAAATTGACTCGCGCTACCTCCTCGTTTATTAAAAACTATATT------------------------------------------------------------------------C------------------------------------GAATG----------TAT----------------------------------------------------------ATATGTGGATGTGGTGT-----------------------CGTATTACTATGTATGTTATGATCTCTGATATATATATAT------TTAT--------A--TATAAATAT----------T----------------------------------------------------------------------------------------------TATGT------------------------ATA----TAAGTATTTGTAT--------GTG-----TGTATGTA----------------------AG--TA-------------------------------------------------------------TA-
droEle1 scf7180000490996:623988-624196 - TAAC-TAC------------------------------------------------------------TGG--------------------------------A-------TTAAGGACACGGGTAAGTGTGTGCGAGT----------------------------------------------------------------------------------GGAGTGTGGACTGTGG------------------------------------------------------A--------------------------------------------GACCCGTCTGCATCGTCAAA--------------------------------------------------------------------------------------------------------------------------TACAAATA---------CAT-----ATA--CATATATATATATAAATGT-------------------------------------------------ATAT------ATA--TAT--A---------------------TATATATATATCCATATATGGGCA--------------GA----TA--TGTGG-----------GTAC---------ATAT------A--TC-TATGCAGATG----------TCGGGCTT------CGGACCGAACGCATCATTACTCCAA------------CA-
droRho1 scf7180000770833:533-682 + TGAA-TTA------------------------------------------------------------CTG--------------------------------A-------TTAAAGA---------------------------------GT---GATTACTGATGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAATG----------TATACATCTAT-------------------------------------------------------------------------------------------AC-----------------------------ATCTATACATATA--------TACATATA--TACATATATACATA---------------------------------------------------------TATACATATATACAT--A---------T----------A--TACAT----------------ATATACATATA----TACATATATACAT--A-----------TATA------CA-TA---T---A---------TA--C----AT---------------------------------------------------------AT
droBia1 scf7180000301129:41-210 - TATT-------------------------------------------------------------TATATATTT--ATATATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATATTTAT----------AT-ATTTAT--------------------ATATTTATATATTTATATATTTATA----------------TA--TTT------------ATGTA--------------------------------------------------------------------------------------TT----TA-----TAT-----ATT--TAT----------ATATTTATATATTTATA---------------------------------------------TATTTATA--TA--T-----TTA--------------TATAT----------------TTATATATTTATG----TATTTATATATTTATAT--ATT-----TATATATT----------------------TA--TA-------------------------------------------------------------TA-
droTak1 scf7180000415789:772978-773120 - ATTG-------------------------------------------------------------TATGTAAA------------------------------------------------------------------------------------------GGGTGAAGCG------GACAACAC---------------------------------------------------------------ATTTG--AAT-----------------------------------------------------------ACTAATTGCATAAT---------------------------------------------TTTTGACCATTCGCGTTTTA-----------------------------------------------CTT-----------------------------ATTTACATACGT--------------A--TATACATAT----------ATA---------------------------------------TGTATATATATGT------ATG--TATA-----------------------TACG----------------------------------------------T--ATAT--A---------------CG-TA---T---A---------TA--T----TT---------------------------------------------------------AT
droEug1 scf7180000408680:400-585 + TTTA-TTA------------------------------------------------------------TTT--------------------------------A-------TTATTTA--TTATTTATTATTTATTATT-----------------------------TATT--------------------------------A----------------------TTTATTATTT------------------------------------------------------A----------TA-TTTATTATTTATATT-------------------------------TTAT-------------------------------------------------------------------------------ATTGTATATTGTAT-----------------------------ATTTATATTTATATT--------TATATT--TAT----------ATTTATATT------T---------------------------------------A--T----ATTTATATTT-----------ATA--TT--------TATAT----------------TTATATTTATA----TTTATATTTATAT--T--T--ATATT--------------------TATA---------TT--T----AT---------------------------------------------------------AT
dm3 chr3L:22804847-22805048 - AACG-GTT--------------------------------------------------------------------------T-T------------------------------------------------------------AGGAAACC---GCTCAATGCCAGAAATA-------------T---------------------------------------------------------------ATATA--TGT----------ATATATATG--TATATATATGT----------AT-ATATAT--------------------GTATATATATGTATATATATGTATA----------------TA--TAT--------------G------------------------------------------------------------------------------------TATATATA---------TGT-----ATA--TAT----------ATGTATATATATGTATA---------------------------------------------TATATGTA--TA--T-----ATA----TG--------T--AT----------------ATATATGTATATATATG----TATATAT--ATGTATATA-----TATGTATA----------------------TA--TA-------------------------------------------------------------TG-
droSim2 3l:178113-178289 + ACTG-AA--------------------------------------------------------------------------------------------------------ATTGTAGTAC---------------------------------------------------------------------------------------------------------------------------------ACGTT--AAT-----------------------------------------------------------ACGATTCACAAA--------------------------------------------------------------------------ACAGGTTGAAACTGT---------------------------------------------------------ACTTATGTGTATT--------TATATATA--GATACAT------ACATACA---------------------------------------------------TATACATATACATAT--A---------T----------T--AATAT----------------ATATATATATA----TATATATATATAT-------------ATAT---------ATAT------------AATATA--TA----TTGTGTT------TGTTTGGCAAATCCGTCAC--------------------------AT
droSec2 scaffold_48:103477-103650 + TCGC-T------------------------------------------------------------------------------T------------------------------------------------------------TGGACTCCATCGCTC---A--------------------------------------------------------------------------------------------------ACTGATCTCCTTGTAAAAAAAAATGTGCTA----------GA-GTTAGCCATTAAATT-------------------------------TTAT-------------------------------------------------------------------------------A------------------------------------------ATTTATATATATG--------TATATATA--TATATAT------ATATATG---------------------------------------------------TATATATATATATAT--A---------T----------G--TATAT----------------ATATATATATA----TGTATATATATAT-------------ATAT---------AAAT------------TATATA--TA-------------------------------------------------------------TA-
droYak3 X:13328867-13329030 - GTTT-------------------------------------------------------------TGTTTCCAT--CTGACTTC-GATTGCTTGA--------ATTACGTTTTAA---------------------------TT--------------------------------------------------------------------------------------A----------------------------------------------------------------------------------------------------TTG----------TGTATCCTGATA----------------GA--ATT------------CGGCA--------------------------------------------------------------------------------------TA----TA-----TAT-----ATA--TACATAT----------ATA---------------------------------------CATAAATATATAT------ATA--TATA-----------------------TATATATATATGTGTAG-----------------AG----TGTGTGTGTGT-------------GTGT---------GTGT------------CACTTA--TATACAA---------------------------------------------------------CT
droEre2 scaffold_4784:10539718-10539916 + GTGT-AT-------------------------------------------------------------GTACT-------------------------------------------GGTGT---------------------------------------------------------------------------------------------------------------------------------ATGTACCGGTGTATTTACCGGTGTATGTATGTAAGTATGTAA----------GT-ATGTACC------------------GGTGTAT--GTATGTATGTATGTATG----------------TA--TGT------------ATG------------------------------------------------------------------------------------TATGTATG---------TAT-----GTA--CAT----------ATGTATGTATGTA--TG---------------------------------------------TATGTATG--TATGT-------ATG--TA--------T--GT----------------ATGTATGTATGTATGTA----TG--TATGTATGTATGTA-----TGTATG------------------------TATGTA-------------------------------------------------------------TG-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GACG-CTTTC-------------------------------------------------------TGTTTACCT--TTGACTC--TATCGACTGA--------A-------TTACTGATAA---------------------GTGT---------------------AAATT--------------------------------G---------------------------C---------------------------------------------------------------------------------------------ATGAA--------------------------------------------------------------------------ATGTGTGGAAATCTGACTCAGC-CTTCGTATCGCTGATTGCGT-----------------------------ATTTGTATATATACT--------CATCTA--TATATAT----------ATA---------------------------------------TAT------A--C----ATATACATAT--A---------T----------A--TATAT----------------ATATATATATGTG----TGTGTGTGTGT-------------GTGC---------ATAT------------CGTTTA--TA----TAGGGCTCTACGTG------CGCGCTGACCGAATCGATATTGCGGCAATATGGCGCACG-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCGAATCGATATTGCGGC..............2111.001000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGC---------ATAT------------CGTTTA--TA----............................................................1611.001000000000000000000000000000000000000000000000000000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------------CGTTTA--TA----TAGGGCTCTACGT...............................................2311.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGT-------------GTGC---------ATAT------------C.........................................................................18180.112011000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT----------------ATATATATATGTG----TGTGT..........................................................................................................................21200.102000000000000000000000000000002000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATATGTG----TGTGT..........................................................................................................................18200.051000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT----------------ATATATATATGTG----TGT............................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TATAT----------------ATATATATATGTG----T..............................................................................................................................20200.051000000000000000001000000000000000000000000000000000000000000000
droMoj3
TCTC-------------------------------------------------------------CATGTGCAT--TCGATTT------------------------------------ATATGTACATATTTATTGTATAAATA----------------------------------------------------------------------------------TGAAATACTGAAATGGGAAACACT----------------------------------------TGCGTCGTTTGC---------TCTACAGC---------AGATG----------TATATATGTATA----------------TA--TGT------------ATGTA--------------------------------------------------------------------------------------TG----TA-----TAT-----ATG--TAT----------ATATGTCTA-------------------------------------------------T----ATGTATA--TATGT-------ATA--TA--------TATAT----------------GTATATATGTA----TATATGTATATATGTATAT--A------------------------TGTA---------TA--T----AT---------------------------------------------------------GTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GGAG-CTCTCCTTTCCAGCTAGCAT------------------------------------------------------------------TTGA---AATGC----------------------------------------------------------------------TGTTAACCTCGT-------------------------------------------T------T-------------------------------------------------------G----------AACTTTGCCATTTGTTTTTGAGCCATTAG--------------------------------------------------------------------------ATGGGCT-----------------------------------------------CGCATCTCTCTTTGGGCAATTTAAATATATA------------------TACATAT----------ATA---------------------------------------TATATATATATAT------ATA--TATA-----------------------TATATATATATATATAT------------AT---------TGTGTG--------------------------------------TGTG---------TG--T----GT---------------------------------------------------------ATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TTTC-------------------------------------------------------------TGTTTTCAT--TTACTTC--ATTCGTTTCATTT-----A-------TTAATGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------A--------------------------GA----TTGCGTTTGGCTTGTTTATGTACCGCCCTCCCGCCCCCC-----------------------TTTCGTGTCTGTTC-------------GTCT----------------------CTC--TGT--------------CTC--------TCCGGCTATGATTGTGAAATAAACTAATGTATATAGATTCTATA------TCA--TTT--G---------------------CATTTTTGCTTTTATTA------------------------------------------------------------------------------------------AAGGGCTCTACATG------CGCTTTAGCTGAATCTCTATTGCGACATCATGGTGCCCA-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTACATG------CGCTTTAGCTGAATCTCTAT....................2811.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATCTCTATTGCGACATCATGGTGCC...2811.00101000
dp5
TGTG-TGT------------------------------------------------------------CTGTTT--GTTGTTG--TTTTGTTTTA---AACGC----------------------------------------------------------------------TTTTTAAATTGCACATTGATATTTTAATATTTTGTAAATATTAAACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTTCGTTT----------------TTCACTTTTTTGCTTGCTAATTTATTTGGACTATATATAT------TCAT--------A--TATATATAT----------ATA---------------------------------------TATACACACATAT------ACG--TATA-----------------------TATA--------------------------------------T----------ATAT--A---------------TG-TA---T---ATATTTGTTTTA--TG-------------------------------------------------------------TA-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ACCGATTG-----------------------------------------------------------------------------------------------A-------TGAATAAGGGT---------------------TGT---------------------AGATT--------------------------------G---------GAAAATTGGATTGGAGACCTGAT------------------------------------------------------C--------------------------------------------GATCTGTTCATATATTTAAA----------------TA-------------------------------------------------------------------------T-----------------------------ATTTATAT------------------TTA--TATATATATATATATATATA---------------------------------------------TACA--T----ATATATATAT--ATCAAGTTCGT-GT-ATATGTA--TATAT----------------ATATACGTATATG----TGCGTGTGTGT-------------GT---------------------G---------TG--C----GT--------------------------------------------------------CG-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----TGCGTGTGTGT-------------GT---------------------G---------TG--C----G............................................................19200.051000001
droAna3
AATA-TTAT---------------------------------------------------------ATTTTAATTTTTG------GTTTGTTTAA--------A-------TTCTTCTTAA---------------------TTAC---------------------AACAA--------------------------------G---------------------------CAGCAAATCAATAAAAACTTT-T--TAT-------------------------------TC--------------------------------------------AGTCGCATATCTAACAAAAAAAACCCATATTTATATATAA---------------TGTT--------------------------------------------------------------------------------------TT----TA-----TAT-----ATA--AATATCT-------CATATA---------------------------------------------------TATATTTTTGTATAT--A---------T----------A--TATAT----------------ATATATGTTTGTG----TGTGTATTTGT-------------GTGT---------GTGT------------TGTGTG--TA-------------------------------------------------------------TA-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGTTTGTG----TGTGTATG.......................................................................................................................2140.251100000
droBip1
TTTC-CGC-----TGCTATTGCCACTGAATTTTCTACTGGCTCAGTGTCAAGCCCATCGGGAGCG---CTA--------------------------------A-------TTGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATCGAT------------------A--------------------------GAGCACTGTAGGCTTA-----------------------------------------------CAT-----------------------------ATTTATATATATA--------TAAACAGA--TATATAT----------ATA---------------------------------------------TATA--TATATATATATATAT--A---------T----------G--AAGAG----------------ATGTATACGTA----TGT-TAAGTGTAG-------------GCAT-----------ATACT---A---------TA--T----AT---------------------------------------------------------AGSizeHit CountTotal NormTotal
No Reads
droKik1
TTGT-------------------------------------------------------------TGTTGAAAT--TAAGCTT-T------------------------------------------------------------TGGATTCG---ATCTGACAGGTGAATCA------A--------------------------------------------------------------------------------------------------------------------------------------------------ATGGAATA----------TATATGCGTACA----------------TA--ATTGTT--TTATTCGC-TTCTA-----------------------------------------------TAT-----------------------------ATGTATATAT----------------ATA--CAT--------------GCA--------TAAGGTT---------------------------A--------A----A----CA--C-----------AC-AC-ATATATATATACAT------------------------ATA----TATATATATGTGT--------ATA-----TATATATA----------------------TA--TA-------------------------------------------------------------TA-SizeHit CountTotal NormTotal
No Reads
droFic1
AGAT-TTT------------------------------------------------------------CT------------------------------------------------TGC----------------------------------------------------ATTTAAAATTGACTCGCGCTACCTCCTCGTTTATTAAAAACTATATT------------------------------------------------------------------------C------------------------------------GAATG----------TAT----------------------------------------------------------ATATGTGGATGTGGTGT-----------------------CGTATTACTATGTATGTTATGATCTCTGATATATATATAT------TTAT--------A--TATAAATAT----------T----------------------------------------------------------------------------------------------TATGT------------------------ATA----TAAGTATTTGTAT--------GTG-----TGTATGTA----------------------AG--TA-------------------------------------------------------------TA-SizeHit CountTotal NormTotal
No Reads
droEle1
TAAC-TAC------------------------------------------------------------TGG--------------------------------A-------TTAAGGACACGGGTAAGTGTGTGCGAGT----------------------------------------------------------------------------------GGAGTGTGGACTGTGG------------------------------------------------------A--------------------------------------------GACCCGTCTGCATCGTCAAA--------------------------------------------------------------------------------------------------------------------------TACAAATA---------CAT-----ATA--CATATATATATATAAATGT-------------------------------------------------ATAT------ATA--TAT--A---------------------TATATATATATCCATATATGGGCA--------------GA----TA--TGTGG-----------GTAC---------ATAT------A--TC-TATGCAGATG----------TCGGGCTT------CGGACCGAACGCATCATTACTCCAA------------CA-SizeHit CountTotal NormTotal
No Reads
droRho1
TGAA-TTA------------------------------------------------------------CTG--------------------------------A-------TTAAAGA---------------------------------GT---GATTACTGATGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAATG----------TATACATCTAT-------------------------------------------------------------------------------------------AC-----------------------------ATCTATACATATA--------TACATATA--TACATATATACATA---------------------------------------------------------TATACATATATACAT--A---------T----------A--TACAT----------------ATATACATATA----TACATATATACAT--A-----------TATA------CA-TA---T---A---------TA--C----AT---------------------------------------------------------ATSizeHit CountTotal NormTotal
No Reads
droBia1
TATT-------------------------------------------------------------TATATATTT--ATATATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATATTTAT----------AT-ATTTAT--------------------ATATTTATATATTTATATATTTATA----------------TA--TTT------------ATGTA--------------------------------------------------------------------------------------TT----TA-----TAT-----ATT--TAT----------ATATTTATATATTTATA---------------------------------------------TATTTATA--TA--T-----TTA--------------TATAT----------------TTATATATTTATG----TATTTATATATTTATAT--ATT-----TATATATT----------------------TA--TA-------------------------------------------------------------TA-SizeHit CountTotal NormTotal
No Reads
droTak1
ATTG-------------------------------------------------------------TATGTAAA------------------------------------------------------------------------------------------GGGTGAAGCG------GACAACAC---------------------------------------------------------------ATTTG--AAT-----------------------------------------------------------ACTAATTGCATAAT---------------------------------------------TTTTGACCATTCGCGTTTTA-----------------------------------------------CTT-----------------------------ATTTACATACGT--------------A--TATACATAT----------ATA---------------------------------------TGTATATATATGT------ATG--TATA-----------------------TACG----------------------------------------------T--ATAT--A---------------CG-TA---T---A---------TA--T----TT---------------------------------------------------------ATSizeHit CountTotal NormTotal
No Reads
droEug1
TTTA-TTA------------------------------------------------------------TTT--------------------------------A-------TTATTTA--TTATTTATTATTTATTATT-----------------------------TATT--------------------------------A----------------------TTTATTATTT------------------------------------------------------A----------TA-TTTATTATTTATATT-------------------------------TTAT-------------------------------------------------------------------------------ATTGTATATTGTAT-----------------------------ATTTATATTTATATT--------TATATT--TAT----------ATTTATATT------T---------------------------------------A--T----ATTTATATTT-----------ATA--TT--------TATAT----------------TTATATTTATA----TTTATATTTATAT--T--T--ATATT--------------------TATA---------TT--T----AT---------------------------------------------------------ATSizeHit CountTotal NormTotal
No Reads
dm3
AACG-GTT--------------------------------------------------------------------------T-T------------------------------------------------------------AGGAAACC---GCTCAATGCCAGAAATA-------------T---------------------------------------------------------------ATATA--TGT----------ATATATATG--TATATATATGT----------AT-ATATAT--------------------GTATATATATGTATATATATGTATA----------------TA--TAT--------------G------------------------------------------------------------------------------------TATATATA---------TGT-----ATA--TAT----------ATGTATATATATGTATA---------------------------------------------TATATGTA--TA--T-----ATA----TG--------T--AT----------------ATATATGTATATATATG----TATATAT--ATGTATATA-----TATGTATA----------------------TA--TA-------------------------------------------------------------TG-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................T-T------------------------------------------------------------AGGAAACC---GCTCAATGCCAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25110.00100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000020000000200001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......T--------------------------------------------------------------------------T-T------------------------------------------------------------AGGAAACC---GCTCAATGCCAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................T-T------------------------------------------------------------AGGAAACC---GCTCAATGCCAGAAATA-------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TT--------------------------------------------------------------------------T-T------------------------------------------------------------AGGAAACC---GCTCAATGCCAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................T------------------------------------------------------------AGGAAACC---GCTCAATGCCAGAAATA-------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TT--------------------------------------------------------------------------T-T------------------------------------------------------------AGGAAACC---GCTCAATGCCAGAAACG-------------A---------------------------------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......T--------------------------------------------------------------------------T-T------------------------------------------------------------AGGAAACC---GCTCAATGCCAGAAATA-------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TT--------------------------------------------------------------------------T-T------------------------------------------------------------AGGAAACC---GCTCAATGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...G-GTT--------------------------------------------------------------------------T-T------------------------------------------------------------AGGAAACC---GCTCAATGCCAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................T-T------------------------------------------------------------AGGAAACC---GCTCAATGCCAGAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................T------------------------------------------------------------AGGAAACC---GCTCAATGCCAGAAATA-------------T---------------------------------------------------------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TT--------------------------------------------------------------------------T-T------------------------------------------------------------AGGAAACC---GCTCAATGCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................CAATGCCAGAAATA-------------T---------------------------------------------------------------ATATA--TGT----------A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......T--------------------------------------------------------------------------T-T------------------------------------------------------------AGGAAACC---GCTCAATGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
......TT--------------------------------------------------------------------------T-T------------------------------------------------------------AGGAAACC---GCTCAATGCCAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----TG--------T--AT----------------ATATATGTATATATATG----TA.........................................................................................................................26200.551100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTATATATATG----TATATAT--ATGTA.............................................................................................................26200.551100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATG----TATATAT--ATGTATATA-----TATGTA..............................................................................................26200.551100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................A--TGT----------ATATATATG--TATATATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................ATG--TATATATATGT----------AT-ATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................CAGAAATA-------------T---------------------------------------------------------------ATATA--TGT----------A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TAT--------------------GTATATATATGTATATATATGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................26200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TATGT----------AT-ATATAT--------------------GTATATATATGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TA--TGT----------ATATATATG--TATATATATGT----------A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................TATG--TATATATATGT----------AT-ATATAT--------------------GTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................TATA--TGT----------ATATATATG--TATATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................ATGT----------AT-ATATAT--------------------GTATATATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................AT--------------------GTATATATATGTATATATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----TATATAT--ATGTATATA-----TATG................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------TGT-----ATA--TAT----------ATGTATATATA.............................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATA---------------------------------------------TATATGTA--TA--T-----ATA----TG--------.....................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATATATATG----TATATAT--ATG...............................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................T--------------G------------------------------------------------------------------------------------TATATATA---------TGT-----ATA--TAT----------ATG.....................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................TATA--TGT----------ATATATATG--TATATATATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AT--------------G------------------------------------------------------------------------------------TATATATA---------TGT-----ATA--TAT----------A.......................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--------T--AT----------------ATATATGTATATATATG----...........................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTA--TA--T-----ATA----TG--------T--AT----------------ATATATG.........................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................T--------------------GTATATATATGTATATATATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TATATG--TATATATATGT----------AT-ATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-----ATA--TAT----------ATGTATATATATG...........................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TATAT--------------------GTATATATATGTATATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
ACTG-AA--------------------------------------------------------------------------------------------------------ATTGTAGTAC---------------------------------------------------------------------------------------------------------------------------------ACGTT--AAT-----------------------------------------------------------ACGATTCACAAA--------------------------------------------------------------------------ACAGGTTGAAACTGT---------------------------------------------------------ACTTATGTGTATT--------TATATATA--GATACAT------ACATACA---------------------------------------------------TATACATATACATAT--A---------T----------T--AATAT----------------ATATATATATA----TATATATATATAT-------------ATAT---------ATAT------------AATATA--TA----TTGTGTT------TGTTTGGCAAATCCGTCAC--------------------------ATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................CAAA--------------------------------------------------------------------------ACAGGTTGAAACTG..............................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
ACTG-AA--------------------------------------------------------------------------------------------------------ATTGTAGTAC---------------------------------------------------------------------------------------------------------------------------------ACGTT--................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
droSec2
TCGC-T------------------------------------------------------------------------------T------------------------------------------------------------TGGACTCCATCGCTC---A--------------------------------------------------------------------------------------------------ACTGATCTCCTTGTAAAAAAAAATGTGCTA----------GA-GTTAGCCATTAAATT-------------------------------TTAT-------------------------------------------------------------------------------A------------------------------------------ATTTATATATATG--------TATATATA--TATATAT------ATATATG---------------------------------------------------TATATATATATATAT--A---------T----------G--TATAT----------------ATATATATATA----TGTATATATATAT-------------ATAT---------AAAT------------TATATA--TA-------------------------------------------------------------TA-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GTTT-------------------------------------------------------------TGTTTCCAT--CTGACTTC-GATTGCTTGA--------ATTACGTTTTAA---------------------------TT--------------------------------------------------------------------------------------A----------------------------------------------------------------------------------------------------TTG----------TGTATCCTGATA----------------GA--ATT------------CGGCA--------------------------------------------------------------------------------------TA----TA-----TAT-----ATA--TACATAT----------ATA---------------------------------------CATAAATATATAT------ATA--TATA-----------------------TATATATATATGTGTAG-----------------AG----TGTGTGTGTGT-------------GTGT---------GTGT------------CACTTA--TATACAA---------------------------------------------------------CTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GTGT-AT-------------------------------------------------------------GTACT-------------------------------------------GGTGT---------------------------------------------------------------------------------------------------------------------------------ATGTACCGGTGTATTTACCGGTGTATGTATGTAAGTATGTAA----------GT-ATGTACC------------------GGTGTAT--GTATGTATGTATGTATG----------------TA--TGT------------ATG------------------------------------------------------------------------------------TATGTATG---------TAT-----GTA--CAT----------ATGTATGTATGTA--TG---------------------------------------------TATGTATG--TATGT-------ATG--TA--------T--GT----------------ATGTATGTATGTATGTA----TG--TATGTATGTATGTA-----TGTATG------------------------TATGTA-------------------------------------------------------------TG-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................GTAAGTATGTAA----------GT-ATGTACC------------------GGTGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-------ATG--TA--------T--GT----------------ATGTATG.........................................................................................................................................18200.1530000030
....................................................................................................................................................................................................................................................................................................................TACC------------------GGTGTAT--GTATGTATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1531000020
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTATGTATGTA-----TGTATG------------------------T.....................................................................21200.1530000030
..............................................................................................................................................................................................................................................................................................................................................TAT--GTATGTATGTATGTATG----------------T............................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010000

Generated: 05/17/2015 at 03:27 AM