ID:

dvi_8373

 Coordinate:

scaffold_12928:1083312-1083462 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.5 -6.3 -6.1

Flybase annnotation

exon [dvir_GLEANR_17157:1]; CDS [Dvir\GJ16653-cds]; intron [Dvir\GJ16653-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AACACACATGTGCTGATTAGCCTGCGCATTGAACACACTCACGCACACACGTACACGTACACGACACACGACACACAGACACAGACACAGACACAGGCACACACAGGCGCACACACGCGCATCGCTATTATATTTACAGTTTTGCTATTAACAGCGAATTTAACATAAATATCAATGAAATATGTGAAATGCAGCTGTTAACTGAAACACGCTTCCAATGGCGTCCACAATTGGGACTGTGGCGCCGACGT
*******************************************************************************************...............((((......)))).................................************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060684
140x9_0-2h_embryos_total
 M027
male body		 SRR060670
9_testes_total
 SRR060675
140x9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060688
160_ovaries_total
 SRR060676
9xArg_ovaries_total
 M028
head
 SRR060655
9x160_testes_total
 SRR060658
140_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060673
9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060681
Argx9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR1106726
embryo_14-16h
 SRR060666
160_males_carcasses_total
 V116
male body		 SRR060665
9_females_carcasses_total
.....................................................................................................................................................................................................................................ATTGGGACTGTGGCGCCGACG. 21 0 1 3.00 3 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................GAAACACGCTTCCAATGGCGT........................... 21 0 1 2.00 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................TGTGAAATGCAGCTGTTAACT................................................ 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0
...................................CACTCACGCACACACGTACACG.................................................................................................................................................................................................. 22 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................CACAGGCACACACAGGCGCAC........................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AATTGGGACTGTGGCGCCGAC.. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CACAATTGGGACTGTGGCGC...... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TTTACAGTTTTGCTATTAACA.................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATGGCGTCCACAATTGGGACTGT........... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CAATTGGGACTGTGGCGCCGA... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................ATATTTACAGTTTTGCTATTAA.................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...ACACATGTGCTGATTAGCCTG................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CCACAATTGGGACTGTGGCGC...... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................CCACGACACACAGACACAGACACAGGCAC............................................................................................................................................................. 29 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................TATGTGAAATGCAGCTGTT.................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AGACACAGGCACACACAGGCG.............................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................GAAATATGTGAAATGCAGCTG...................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGAAACACGCTTCCAATGGCG............................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CGTACACGTACACGACACACGTA................................................................................................................................................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GCACACATGTGCTGATTAGCC..................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................TCACGCACACACGTACACGTA................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GCACGTGCACGGCACACGACA.................................................................................................................................................................................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GGGCTGATCAGACTGCGCAT.............................................................................................................................................................................................................................. 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................CACAGACACAGACACAGGCA........................................................................................................................................................ 20 0 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................GTACACACGCCCGTCGCTA............................................................................................................................ 19 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................TTGCTATTAAGCGCGAATTG.......................................................................................... 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................ACACAGACACAGACACAGACA.............................................................................................................................................................. 21 0 18 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................ACACACAGACACAGACACAG................................................................................................................................................................. 20 0 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTGTGTGTACACGACTAATCGGACGCGTAACTTGTGTGAGTGCGTGTGTGCATGTGCATGTGCTGTGTGCTGTGTGTCTGTGTCTGTGTCTGTGTCCGTGTGTGTCCGCGTGTGTGCGCGTAGCGATAATATAAATGTCAAAACGATAATTGTCGCTTAAATTGTATTTATAGTTACTTTATACACTTTACGTCGACAATTGACTTTGTGCGAAGGTTACCGCAGGTGTTAACCCTGACACCGCGGCTGCA
**************************************************************************************************...............((((......)))).................................******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060673
9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060681
Argx9_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060654
160x9_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 GSM1528803
follicle cells		 V116
male body		 SRR060656
9x160_ovaries_total
 SRR060658
140_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060689
160x9_testes_total
 SRR060657
140_testes_total
 SRR060683
160_testes_total
 SRR060669
160x9_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060670
9_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060665
9_females_carcasses_total
 V047
embryo
................................................................................................................................................................................................................TGCGAAGGTTACCGCAGGTGT...................... 21 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CGATAATTGTCGCTTAAATTGT...................................................................................... 22 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TGACTTTGTGCGAAGGTTACC.............................. 21 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GTGTGTGCGCGTAGCGATAATATAAAT................................................................................................................... 27 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AAAACGATAATTGTCGCT.............................................................................................. 18 0 1 2.00 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................GTCTGTGTCCGTGTGTGTCCGC.............................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................GTGCGTGTGCTGTGTGCTGTG................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GTGTGTGCGCGTAGCGATAATATAAA.................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GTCCGTGTGTGTGCGCGTAGCG.............................................................................................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................GTGCATGTGCATGTGCTGTGT....................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CGCGTAGCGATAATATAAAT................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CGTGTGTGTGCGCGTAGCGATAATA........................................................................................................................ 25 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................AGCGATAATATAAATGTCAAA............................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................GTGTGAGTGCGTGTGTGCATG..................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................ATTGTCGCTTAAATTGTATTTATAGT............................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CGAAGGTTACCGCAGGTGTTA.................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................GTGCGTGTGCATGTGCTGTGT....................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTATAGTTACTTTATACACTTTACGT.......................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................CGTGTGTGCGCGTAGCGA............................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........CGACTAATCGGACGCGTAACT........................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GTCCGCGTGTGTGCGCGTAGC............................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................GTTCTGTGTGCTGTGTGTCTGT.......................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................GTAACTTGTGTGAGTGCGTGT............................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TGTGTCCGTGTGTGTCCGCGT............................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TGCGTAACTTGTGTGAGTGCGTGTG........................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CGCGTAGCGATAATATAAATG.................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AGCGTAGCGATAATATAAAT................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CGTGTGTGTGCGCGTAGCGAT............................................................................................................................ 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GTAGCGATAATATAAATGTCAAAACGAT........................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GACAATTGACTTTGTGCGAAGCT.................................. 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CGACGGTTACCGCAGGTGTTA.................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GTGCGAAGGTTACCGCAGGTGTTAAC.................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................ATACACTTTACGTCGACAATT.................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................CTTCTGTGAGTGCGTGTGTGC........................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................GTGTGTGTCCGCGTGTGTGCGC.................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TGTGCGAAGGTTACCGCAGGTGTT..................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GTGTCCGTGTGTGTCCGCGT............................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GCGTAGCGATGGTATAAATGT................................................................................................................. 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TATACACTTTACGTCGACAAT................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................CTGTGTGCTGTGTGTCTGTGTCT...................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CTTTGTGCGAAGGTTACCGCAGGTGTT..................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AATTGACTTTGTGCGAAGGTT................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................GTAGCGATAATATAAATGTCA............................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GTGTCCGTGTGTGTCCGCGTGT.......................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GTCCGCGTGTGTGCGCGTAGCGATAAT......................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TGTCGCTTAAATTGTATTTATAGT............................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................CGACAGTTGACTTTGTGCGGA..................................... 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CAAACGATAATTGTCGCT.............................................................................................. 18 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TGTGTGCTGTGTGTCTGTG......................................................................................................................................................................... 19 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................GTGTGAGTGCGTGTGTGC........................................................................................................................................................................................................ 18 0 7 0.43 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0
.............................................GTGTGCGTGTGCATGTGCTGT......................................................................................................................................................................................... 21 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TGTGTGAGTGCGTGTGTGC........................................................................................................................................................................................................ 19 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TGTCCCTAAAACTGTATTTAT................................................................................ 21 3 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GAAGGTTCCGGCAGATGTT..................... 19 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGTGTGTCTGTGTCTGTGTCT................................................................................................................................................................ 21 0 12 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................GTGGGAGTGCGTGTGTGC........................................................................................................................................................................................................ 18 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................TTTGTGAGTGCGTGTGTGC........................................................................................................................................................................................................ 19 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................CTGTGAGTGCGTGTGTGC........................................................................................................................................................................................................ 18 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TGTCTGTGTCCGTGTATG................................................................................................................................................... 18 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GCGAGGGTTACGGCAGATG....................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:1083262-1083512 - dvi_8373 A-----------ACACACA-------------------TGTGCTGATTAGCCTGCGCATTGA---------------------------------ACACACTCACGCACACAC------------------GTACACGTACACGACACACGACACACAGACACAGACACAGACACAGGCACACACAGGC--GCACACACGCGCA--------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------CGCTATTATATTTACAGTTTTGCTATTAAC---A--------GCGAATTT-------------AACATAAATATCAATGAAATATGT-GAAATGCAGCTGTTA-ACTGAAACACGCTTC-------CAATGGCGTCCACAATTGGGACTGTGGCGCCGACGT
droMoj3 scaffold_6473:16860405-16860687 - A-----------ACACGCA-------------------C------------------------------------------------------------ACACACACACACAC------------------ACACTCACACA-CACATGCAC-GCACACACAGGCATACACACACACACACACACACAC--ACACACACACACAA------------------------------------------------------GCATAA------ACACG--------CATGGGCGGCAGTGATCGCTTACTATGAGAAATTAATTGTTTAATAACTTTTTTGTGGACGTACGAACTTCATGAAACTTTCAGATTATGATTATAACATGGATATGCATGTATTTGCCAAAGCACAAGTCTC-----------------------------------------------------------------------------------------------TAGTA-TTTGAAATACGTTTT----TT---A-------CAAAAGTGAGGGTGAGGGGGTGA---
droGri2 scaffold_14853:7472389-7472595 + C-----------ACACGTT-------------------TGTTTTG----------------------------------GCGTGGTAGCTCAATCGCGTCCTCACGCACACAC------------------ACACACACATA-CACAAAC-----AAACACATTAATGCTCTCGTCGATATACTTACGT--TTATCTATTCACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAATTT---------------CATA-ACATCAAGAGGATATTGAGAAACGAGAGAAACG----------CGCACCAAATGAACTAAAGTGCACACCTTTG-CACTGTTACGTCGCTGT
droWil2 scf2_1100000004590:2777652-2777877 + T-----------GCACACA-------------------C------------------------------------------------------------ACACACACACACAC------------------ACACACACACA-CA-----------CACACACACACACACACACACACACACACAGACACAACCACAGCCACATGTGAATCTAAGAGCTACCTACGCGTACTAATCTATATACATACACATATATACAGC-TATATATATATAGACATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATACAATATATTT-AAAACGCAAGCAACA-AACAAAACA------------ACAAAAATGTCCATAAATG------------------
dp5 4_group3:6693113-6693229 - A-----------CCACACA-------------------CGTCACC----------------------------------CCCTGCATGCACACACACACACACACACACACAC------------------ACACACACACA-CACACACAC-ACACACACACACACACACACACACACACACACACAC--ACACACACACAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_2:665686-665805 + G------------CATTGC-------------------CAAACAC----------------------------------AATATCAC------------------GCATACACAACCGCAATCCCACTGATAAACACAC-----ACACACAC-ACAGACACACACAGACACACACAGACACACACACAC--ACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGC------ACATACAGTTTT-------------------------------------------------------------------------------------------------------G-------------------------------------
droAna3 scaffold_13337:2680487-2680629 - C-----------ACACACA-------------------CACGCAC----------------------------------ACACACACGCACACACACACGCACACACACACGC------------------ACACACACACG-CACACACAC-ACGCACACACACACACACACACACACACACACACAC--ACACACACACACA--------------------------------------------------------------------------------C---------------------------------------------------------------------------------------------------------------------------------ACACACTCCAGATACTGTAT------------C------------------------------------------------------------------------------------------------------------------------------TAC
droBip1 scf7180000396696:392900-393018 - A------------CACACA-------------------A------------------------------------------------------------ACACACACACGTGC------------------ACACATACACC-CGAAAACAC-ACACAGA-G------------AACGCCCACACAAAA--AA--------------------------------------------------------------TGTAGCATACATTTCAGCGCACATTCATGT---------------------------------------------------------------------------------------------------------------------------------ATTTATTTCAGTTGCCGTTT-------------------------------------------------------------------------------------------------------TG-------------------------------------
droKik1 scf7180000302398:413936-414060 - A------------CACACA-------------------C------------------------------------------------------------ACACACACACACAC------------------ACACACACACA-CACACACAC-ACACACACACACACACACACACACACACACACACAC--ACACACACACACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------ATTT------AGTATTAAT-------------------------------------------------------------GAAACA-AACAAAAAA-------ATTGA-------------------------------------
droFic1 scf7180000454073:3667774-3667881 - A-----------TCAGC---------------------TTCTGCA-------------TTGAACATTCAATCTT--------ACCACGCAC--------ACACACACACAGGC------------------AC--------------CTGGC-ACACAGAAACACACACAGAGGAACACACACACAGGA--ACACACACGAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491044:57667-57828 + T-----------ACGCATTTACGCAGAGCAGCTACAAAC-CAC------------CCACAAG---------------------------------G----CACACACACACAC------------------ACACACACACA-CACACACAC-ACACACACACACACACACACACACACACACACACAC--ACATCCACCCACAA--------------------------------------------------------------------------GCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTA--TCC---TT---------------------------------AACTAAATTTGCGCAT----------------------TTTTTTTTA-------------------------------A
droRho1 scf7180000779872:341204-341315 + T-----------GCTC---TAATCAGAGTACCCA----CACGC----------------------------------ACAC------------------ACACACACACACAC------------------ACACACACACA-CACACACAC-ACACACACACACACACACACACACACACACACACAC--ACACACACACACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301141:6177-6302 - A------------CACACA-------------------CACACAC----------------------------------ACACACACGCACACGCACGCACGCACGCACACAC------------------ACACACACACA-CACACAC-----ACACGCACACACACACACACACACACACACACGC--ACACACACACAC--------------------------------------------------------------------------------AC---------------------------------------------------------------------------------------------------------------------------ACACATCTC------------------------------------------------------------------------------------------------------------------------------------------------------------TGT
droTak1 scf7180000415381:115331-115433 + TTATCCTGGCCAACACACA-------------------C------------------------------------------------------------ACACACACACACAC------------------ACACACACACA-CACACACAC-ACACACACACACACACACACACACACACACACACAC--ACACACACACACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409061:277419-277539 - A-----------ATTCAAT-------------------TTTAGTA-------------AACTGTATTTATGCCAAACACACAG----------------ACAC--ACACACGTGC----------------CT--ACACACA-CACACACAC-ATACACACACACATACACACACACTCACACACACAC--ACACACATACACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr2R:9579208-9579348 - A-----------ACACACA-------------------C------------------------------------------------------------GCAC--------AC------------------ACACACACACA-CACACACAC-ACACACACACACACACACACACACACACACACACAC--ACACACACACACAT--------------------------------------------------------------------------GGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGCTGCG---TT---------------------------------AATAAAAATTGAGCGAAACGG-G-------CGCATCAGAGAAATATA-------------------------------T
droSim2 x:20599573-20599666 - C-----------ACAAAGA-------------------C---------------------------------------------------------CTCTCTCACGCACGCAC------------------ACACACGCACA-CACACGCAC-ACACACGCACACACACGCACACACACGCACACACAC--GCACCCACACGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_4:1676916-1677052 - A------------CACACA-------------------C------------------------------------------------------------ACACACACACACAC------------------ACACACACACA-CACACACAC-ACACACACACACACACACACACACACACACACACAC--ACACACACACACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------CTGC------AGCAGCAGC-------------AGCATCACAATTTTTAAAT-------------------------------------ACACACCA-------GTGGA-------------------------------------
droYak3 3L:1640539-1640653 - A-----------ACATTTA-------------------TGCGGCG----------------------------------ATAAGTTTTCTTCAATTAAAACTTTGGCACACAG------------------ACACA---GCA-CAAACACAC-CGACACGGGCACAGACACGGATACGCACACGCACAC--ACACGCAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC---------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4784:11787163-11787281 + C-----------ATACATA-------------------CATACAT----------------------------------ACATGCATGCATACATTCACACACACACACACAC------------------ACACACACACA-CACACACAC-ACACACACACACACACACACACACACACACACACAC--ACACACACACACA--------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
A-----------ACACACA-------------------TGTGCTGATTAGCCTGCGCATTGA---------------------------------ACACACTCACGCACACAC------------------GTACACGTACACGACACACGACACACAGACACAGACACAGACACAGGCACACACAGGC--GCACACACGCGCA--------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------CGCTATTATATTTACAGTTTTGCTATTAAC---A--------GCGAATTT-------------AACATAAATATCAATGAAATATGT-GAAATGCAGCTGTTA-ACTGAAACACGCTTC-------CAATGGCGTCCACAATTGGGACTGTGGCGCCGACGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGACTGTGGCGCCGACG.2113.003000000000000000000000000010001010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACACGCTTC-------CAATGGCGT...........................2112.002000000000000000000000000001000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-GAAATGCAGCTGTTA-ACT.......................................................2112.002000000000000010000010000000000000000000000000000000000000000000
..................................................................................................CACTCACGCACACAC------------------GTACACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002001000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................CACAGGCACACACAGGC--GCAC.............................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGGGACTGTGGCGCCGAC..2111.001100000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAATTGGGACTGTGGCGC......2011.001000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGTTTTGCTATTAAC---A--------........................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGTCCACAATTGGGACTGT...........2311.001000000001000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTGGGACTGTGGCGCCGA...2111.001100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTACAGTTTTGCTATTAA.....................................................................................................................................2211.001000000000000000000000000000000000010000000000000000000000000000
..............ACACA-------------------TGTGCTGATTAGCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAATTGGGACTGTGGCGC......2111.001000001000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGT-GAAATGCAGCTGTT............................................................1911.001000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................................................AGACACAGGCACACACAGGC--G................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATATGT-GAAATGCAGCTG..............................................................2111.001000000000000000000000001000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACACGCTTC-------CAATGGCG............................2111.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................C------------------GTACACGTACACGACACACGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................TCACGCACACAC------------------GTACACGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................................................CACAGACACAGACACAGGCA............................................................................................................................................................................................................................................................................................................................................................................................................2080.131000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................................ACACAGACACAGACACAGACA..................................................................................................................................................................................................................................................................................................................................................................................................................21180.061000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................ACACACAGACACAGACACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................20180.061000000000000000000000000000000000010000000000000000000000000000
droMoj3
A-----------ACACGCA-------------------C------------------------------------------------------------ACACACACACACAC------------------ACACTCACACA-CACATGCAC-GCACACACAGGCATACACACACACACACACACACAC--ACACACACACACAA------------------------------------------------------GCATAA------ACACG--------CATGGGCGGCAGTGATCGCTTACTATGAGAAATTAATTGTTTAATAACTTTTTTGTGGACGTACGAACTTCATGAAACTTTCAGATTATGATTATAACATGGATATGCATGTATTTGCCAAAGCACAAGTCTC-----------------------------------------------------------------------------------------------TAGTA-TTTGAAATACGTTTT----TT---A-------CAAAAGTGAGGGTGAGGGGGTGA---SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................................................................................................................................TTTTTGTGGACGTACGAACTTCAT...........................................................................................................................................................................................................................2421.002010010
................................................................................................................................................................................................................................................................................................................TACTATGAGAAATTAATTGTTTAAT.......................................................................................................................................................................................................................................................25200.60121200000
................................................................................................................................................................................................................................................................................................................................................TTGTGGACGTACGAACTTCATG..........................................................................................................................................................................................................................2220.501100000
.............................................................................................................................................................................................................................................................................................................................................TTTTTGTGGACGTACGAACTTCATG..........................................................................................................................................................................................................................2520.501100000
...................................................................................................................................................................................................................................................................................................................................................TGGACGTACGAACTTCATGAAACTT....................................................................................................................................................................................................................2540.502200000
................................................................................................................................................................................................................................................................................................................................................TTGTGGACGTACGAACTTCATT..........................................................................................................................................................................................................................2220.501100000
.............................................................................................................................................................................................................................................................................................................................................TTTTTGTGGACGTACGAACTTCA............................................................................................................................................................................................................................2320.501100000
...............................................................................................................................................................................................................................................................................................................................................TTTGTGGACGTACGAACTTCATG..........................................................................................................................................................................................................................2320.501100000
..............................................................................................................................................................................................................................................................................................................................................TTTTGTGGACGTACGAACTTCATGAAACT.....................................................................................................................................................................................................................2920.501000010
.............................................................................................................................................................................................................................................................................................................................................................................CAGATTATGATTATAACATGGATATGC........................................................................................................................................................................................27200.459000090
................................................................................................................................................................................................................................................................................................................TACTATGAGAAATTAATTGTTTAATA......................................................................................................................................................................................................................................................26200.357700000
...............................................................................................................................................................................................................................................................................................................................................TTTGTGGACGTACGAACTT..............................................................................................................................................................................................................................1930.331000010
..........................................................................................................................................................................................................................................................................................................................................................ACGAACTTCATGAAACTTTCAGATTA............................................................................................................................................................................................................2630.331100000
.............................................................................................................................................................................................................................................................................................................................................TTTTTGTGGACGTACGAACT...............................................................................................................................................................................................................................2030.331000010
................................................................................................................................................................................................................................................................................................................TACTATGAGAAATTAATTGTTTAA........................................................................................................................................................................................................................................................24200.306600000
................................................................................................................................................................................................................................................................................................................TACTATGAGAAATTAATTGTTTAATAAC....................................................................................................................................................................................................................................................28200.306600000
............................................................................................................................................CA-CACATGCAC-GCACACACAGGCATA........................................................................................................................................................................................................................................................................................................................................................................................................................26140.294000040
....................................................................................................................................................................................................................................................................................................................................................GGACGTACGAACTTCATGAAACTTT...................................................................................................................................................................................................................2540.251000010
........................................................................................................................................................................................................................................................................................................................................................GTACGAACTTCATGAAACT.....................................................................................................................................................................................................................1950.201000010
................................................................................................................................................................................................................................................................................................................TACTATGAGAAATTAATTGTTTA.........................................................................................................................................................................................................................................................23200.153300000
...................................................................................................................................................TGCAC-GCACACACAGGCATACACACACAC...............................................................................................................................................................................................................................................................................................................................................................................................................2990.111000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGAGGGTGAGGGGG......18200.102200000
.............................................................................................................ACAC------------------ACACTCACACA-CACATGCAC-GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................26100.101100000
............................................................................................................................................CA-CACATGCAC-GCACACACAGGCATACAC.....................................................................................................................................................................................................................................................................................................................................................................................................................29100.101000010
..................................................................................................................................................................................................................................................................................................................CTATGAGAAATTAATTGTTTAATAAC....................................................................................................................................................................................................................................................26200.102200000
....................................................................................................................................CACTCACACA-CACATGCAC-GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................21120.081100000
................................................................................................................................................................................................................................................................................CACG--------CATGGGCGGCAGTGATCGC.................................................................................................................................................................................................................................................................................23150.071100000
..........................................................................................................................................CACA-CACATGCAC-GCACACACAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................25160.061000010
............................................................................................................................................CA-CACATGCAC-GCACACACAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................23170.061000010
...............................................................................................................................................CACATGCAC-GCACACACAGG............................................................................................................................................................................................................................................................................................................................................................................................................................20170.061100000
................................................................................................................................................................................................................................................................................................................TACTATGAGAAATTAATTGTTTAATAACT...................................................................................................................................................................................................................................................29200.051000010
...............................................................................................................................................................................................................................................................................................................................................................................GATTATGATTATAACATGGATATGC........................................................................................................................................................................................25200.051000010
................................................................................................................................................................................................................................................................................................................TACTATGAGAAATTAATTGTTT..........................................................................................................................................................................................................................................................22200.051100000
................................................................................................................................................................................................................................................................................................................TACTATGAGAAATTAATTGTTTAAAT......................................................................................................................................................................................................................................................26200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................ATTATAACATGGATATGCATGT....................................................................................................................................................................................22200.051001000
...............................................................................................................................................................................................................................................................................................................TTACTATGAGAAATTAATTGTTTAA........................................................................................................................................................................................................................................................25200.051100000
.................................................................................................................................................................................................................................................................................................................ACTATGAGAAATTAATTGTTTAATAACT...................................................................................................................................................................................................................................................28200.051100000
...........................................................................................................................................................................................................AA------------------------------------------------------GCATAA------ACACG--------CATGGGCGGC..........................................................................................................................................................................................................................................................................................23200.051000010
................................................................................................................................................................................................................................................................................................................................................................................ATTATGATTATAACATGGATATGCA.......................................................................................................................................................................................25200.051000010
...................................................................................................................................................................................................................................................................................................................................................................ATGAAACTTTCAGATTATGATTATAAC..................................................................................................................................................................................................27200.051000010
................................................................................................................................................................................................................................................................................................................TACTATGAGAAATTAATTGT............................................................................................................................................................................................................................................................20200.051000010
..............................................................................................................................................................................................................................................................................................................................................................................................ATGGATATGCATGTATTTGCCAAA..........................................................................................................................................................................24200.051100000
.................................................................................................................................................................................................................................................................................................................ACTATGAGAAATTAATTGTTTAAT.......................................................................................................................................................................................................................................................24200.051100000
droGri2
C-----------ACACGTT-------------------TGTTTTG----------------------------------GCGTGGTAGCTCAATCGCGTCCTCACGCACACAC------------------ACACACACATA-CACAAAC-----AAACACATTAATGCTCTCGTCGATATACTTACGT--TTATCTATTCACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAATTT---------------CATA-ACATCAAGAGGATATTGAGAAACGAGAGAAACG----------CGCACCAAATGAACTAAAGTGCACACCTTTG-CACTGTTACGTCGCTGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
T-----------GCACACA-------------------C------------------------------------------------------------ACACACACACACAC------------------ACACACACACA-CA-----------CACACACACACACACACACACACACACACAGACACAACCACAGCCACATGTGAATCTAAGAGCTACCTACGCGTACTAATCTATATACATACACATATATACAGC-TATATATATATAGACATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATACAATATATTT-AAAACGCAAGCAACA-AACAAAACA------------ACAAAAATGTCCATAAATG------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
A-----------CCACACA-------------------CGTCACC----------------------------------CCCTGCATGCACACACACACACACACACACACAC------------------ACACACACACA-CACACACAC-ACACACACACACACACACACACACACACACACACAC--ACACACACACAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
G------------CATTGC-------------------CAAACAC----------------------------------AATATCAC------------------GCATACACAACCGCAATCCCACTGATAAACACAC-----ACACACAC-ACAGACACACACAGACACACACAGACACACACACAC--ACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGC------ACATACAGTTTT-------------------------------------------------------------------------------------------------------G-------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
C-----------ACACACA-------------------CACGCAC----------------------------------ACACACACGCACACACACACGCACACACACACGC------------------ACACACACACG-CACACACAC-ACGCACACACACACACACACACACACACACACACAC--ACACACACACACA--------------------------------------------------------------------------------C---------------------------------------------------------------------------------------------------------------------------------ACACACTCCAGATACTGTAT------------C------------------------------------------------------------------------------------------------------------------------------TACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................ACACGC------------------ACACACACACG-CAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................20110.182020000
...............................................................................................ACACGCACACACACACGC------------------AC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................20110.182020000
...................................................................................ACACGCACACACACACGCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20110.182020000
.........................................................................................................................................ACACG-CACACACAC-ACGCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................20110.182020000
..................A-------------------CACGCAC----------------------------------ACACACACGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20110.182020000
......................................CACGCAC----------------------------------ACACACACGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19150.132020000
..........................................................................................................................................CACG-CACACACAC-ACGCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................19150.132020000
....................................................................................CACGCACACACACACGCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19150.132020000
............................................................................................................CACGC------------------ACACACACACG-CAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................19150.132020000
................................................................................................CACGCACACACACACGC------------------AC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................19150.132020000
...................................................................................ACACGCACACACACACGCACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.101100000
...........................................................................................................ACACGC------------------ACACACACACG-CACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................21100.101100000
..................A-------------------CACGCAC----------------------------------ACACACACGCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.101100000
.........................................................................................................................................ACACG-CACACACAC-ACGCACA................................................................................................................................................................................................................................................................................................................................................................................................................................21100.101100000
...............................................................................................ACACGCACACACACACGC------------------ACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.101100000
.....................................................................................................................................................CAC-ACGCACACACACACACAC.....................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
droBip1
A------------CACACA-------------------A------------------------------------------------------------ACACACACACGTGC------------------ACACATACACC-CGAAAACAC-ACACAGA-G------------AACGCCCACACAAAA--AA--------------------------------------------------------------TGTAGCATACATTTCAGCGCACATTCATGT---------------------------------------------------------------------------------------------------------------------------------ATTTATTTCAGTTGCCGTTT-------------------------------------------------------------------------------------------------------TG-------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
A------------CACACA-------------------C------------------------------------------------------------ACACACACACACAC------------------ACACACACACA-CACACACAC-ACACACACACACACACACACACACACACACACACAC--ACACACACACACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------ATTT------AGTATTAAT-------------------------------------------------------------GAAACA-AACAAAAAA-------ATTGA-------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
A-----------TCAGC---------------------TTCTGCA-------------TTGAACATTCAATCTT--------ACCACGCAC--------ACACACACACAGGC------------------AC--------------CTGGC-ACACAGAAACACACACAGAGGAACACACACACAGGA--ACACACACGAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
T-----------ACGCATTTACGCAGAGCAGCTACAAAC-CAC------------CCACAAG---------------------------------G----CACACACACACAC------------------ACACACACACA-CACACACAC-ACACACACACACACACACACACACACACACACACAC--ACATCCACCCACAA--------------------------------------------------------------------------GCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTA--TCC---TT---------------------------------AACTAAATTTGCGCAT----------------------TTTTTTTTA-------------------------------ASizeHit CountTotal NormTotal
No Reads
droRho1
T-----------GCTC---TAATCAGAGTACCCA----CACGC----------------------------------ACAC------------------ACACACACACACAC------------------ACACACACACA-CACACACAC-ACACACACACACACACACACACACACACACACACAC--ACACACACACACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
A------------CACACA-------------------CACACAC----------------------------------ACACACACGCACACGCACGCACGCACGCACACAC------------------ACACACACACA-CACACAC-----ACACGCACACACACACACACACACACACACACGC--ACACACACACAC--------------------------------------------------------------------------------AC---------------------------------------------------------------------------------------------------------------------------ACACATCTC------------------------------------------------------------------------------------------------------------------------------------------------------------TGTSizeHit CountTotal NormTotal
No Reads
droTak1
TTATCCTGGCCAACACACA-------------------C------------------------------------------------------------ACACACACACACAC------------------ACACACACACA-CACACACAC-ACACACACACACACACACACACACACACACACACAC--ACACACACACACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
A-----------ATTCAAT-------------------TTTAGTA-------------AACTGTATTTATGCCAAACACACAG----------------ACAC--ACACACGTGC----------------CT--ACACACA-CACACACAC-ATACACACACACATACACACACACTCACACACACAC--ACACACATACACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
A-----------ACACACA-------------------C------------------------------------------------------------GCAC--------AC------------------ACACACACACA-CACACACAC-ACACACACACACACACACACACACACACACACACAC--ACACACACACACAT--------------------------------------------------------------------------GGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGCTGCG---TT---------------------------------AATAAAAATTGAGCGAAACGG-G-------CGCATCAGAGAAATATA-------------------------------TSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............CACACA-------------------C------------------------------------------------------------GCAC--------AC------------------ACACACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000010000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............ACACACA-------------------C------------------------------------------------------------GCAC--------AC------------------ACACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................ACAC-ACACACACACACAC.........................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
C-----------ACAAAGA-------------------C---------------------------------------------------------CTCTCTCACGCACGCAC------------------ACACACGCACA-CACACGCAC-ACACACGCACACACACGCACACACACGCACACACAC--GCACCCACACGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
A------------CACACA-------------------C------------------------------------------------------------ACACACACACACAC------------------ACACACACACA-CACACACAC-ACACACACACACACACACACACACACACACACACAC--ACACACACACACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------CTGC------AGCAGCAGC-------------AGCATCACAATTTTTAAAT-------------------------------------ACACACCA-------GTGGA-------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................CACACACAC-ACACACACACACACA........................................................................................................................................................................................................................................................................................................................................................................................................................24200.0511000
.............CACACA-------------------C------------------------------------------------------------ACACACACACAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000
.................................................................................................................................................CACACAC-ACACACACACACACACA......................................................................................................................................................................................................................................................................................................................................................................................................................24200.0511000
............................................................................................................................................CA-CACACACAC-ACACACACACACA..........................................................................................................................................................................................................................................................................................................................................................................................................................24200.0511000
...................................................................................................................................................CACAC-ACACACACACACACACACA....................................................................................................................................................................................................................................................................................................................................................................................................................24200.0511000
..........................................................................................................................................................CACACACACACACACACACACACA..............................................................................................................................................................................................................................................................................................................................................................................................................24200.0511000
.....................................................................................................................................................CAC-ACACACACACACACACACACA..................................................................................................................................................................................................................................................................................................................................................................................................................24200.0511000
..........................................................................................................................................CACA-CACACACAC-ACACACACACA............................................................................................................................................................................................................................................................................................................................................................................................................................24200.0511000
.......................................................................................................................................................C-ACACACACACACACACACACACA................................................................................................................................................................................................................................................................................................................................................................................................................24200.0511000
droYak3
A-----------ACATTTA-------------------TGCGGCG----------------------------------ATAAGTTTTCTTCAATTAAAACTTTGGCACACAG------------------ACACA---GCA-CAAACACAC-CGACACGGGCACAGACACGGATACGCACACGCACAC--ACACGCAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC---------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
C-----------ATACATA-------------------CATACAT----------------------------------ACATGCATGCATACATTCACACACACACACACAC------------------ACACACACACA-CACACACAC-ACACACACACACACACACACACACACACACACACAC--ACACACACACACA--------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................CATTCACACACACACACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510001000

Generated: 05/16/2015 at 11:45 PM