ID:

dvi_8369

 Coordinate:

scaffold_12928:1075157-1075238 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ16759-cds]; exon [dvir_GLEANR_17265:5]; CDS [Dvir\GJ16759-cds]; exon [dvir_GLEANR_17265:6]; intron [Dvir\GJ16759-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
TART_DVLINEJockey+

Sense Strand Reads

##################################################----------------------------------------------------------------------------------##################################################
CCACCGAGGAAAAGGAGTGGCTGCGTCAGCTGCGCACGCTGGCCGATCAGGTGAGTTTAGCTGTTGCAGCTGTTGCGTTTCAACAATTGCTAATGCATTTACGCGCGGCGGCAGCCCCTGCAGGATCAACAGTTGCAACAGCAACAGGAACAACAGCAACAACAACAGCAGCAGCAGCAACA
**************************************************.(((...(((..(((((.(((((.((((......((.(((....))).))))))))))).)))))..))).....)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060687
9_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060658
140_ovaries_total
 SRR060664
9_males_carcasses_total
 V047
embryo
 SRR060667
160_females_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060659
Argentina_testes_total
 M027
male body		 SRR060663
160_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 V053
head
CCATTGAGGAAAAGGCGTGGCT................................................................................................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................CAGCCCCTGCAGGATCAACAGTTGC.............................................. 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................CAGCCCCTGCAGGATCAACAGT................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
CCACCGAGGAAAAGGAGT.................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................CAGCTGCGCAGGCTGGCCGATCAGGAT................................................................................................................................. 27 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....CGAGGAAAAGGAGTGGCTGC.............................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........AAAAGGAGTGGCTGCGTCAGC........................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AGTTGCAACAGCAACAGGAACAACAGCAA....................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GAAAAGGAGTGGCTGCGTCAGCT....................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CAACAGCAACAGGAACAACAGC......................... 22 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................GGAACCACAGTTGCAACAGCA....................................... 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AGCAACAACAACAGCAGCA......... 19 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1
................................................................................................................................................................AACAACAGCAGCAGCAGCAACA 22 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................ACAACAGCAGCAGCAGCAACA 21 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AACAACAACAGCAGCAGCAGCA... 22 0 20 0.10 2 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0
...................................................................................................................................GTTGCAACAGGAATAGGA................................. 18 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................ACGCTGGCCGACCCGGTCA................................................................................................................................ 19 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................ATTCTGGCCGATCAGGTAA................................................................................................................................ 19 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CAGCAACAACAACAGCAGCAGCA...... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................GCAACAACAACAGCAGCAGCAGCAAC. 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AACAACAACAGCAGCAGCAGCAACA 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................ACAGCAACAACAACAGCAG........... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................AACAACAGCAACAACAACAGC............. 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................AGGTGAGTTTGGCTGGGGC................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................AAGAGCAACAACAACAGCAGCAGC....... 24 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AGCAACAACAACAGCAGCAGC....... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................ACAGCAACAACAACAGCAGCAGCAGCA... 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................AACAACAGCAGCAGCAGC.... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................CAACAGCAGCAGCAGCAAC. 19 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GCAACAACAACAGCAGCAGCA...... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................CAACAACAGCAGCAGCAGCAA.. 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

GGTGGCTCCTTTTCCTCACCGACGCAGTCGACGCGTGCGACCGGCTAGTCCACTCAAATCGACAACGTCGACAACGCAAAGTTGTTAACGATTACGTAAATGCGCGCCGCCGTCGGGGACGTCCTAGTTGTCAACGTTGTCGTTGTCCTTGTTGTCGTTGTTGTTGTCGTCGTCGTCGTTGT
**************************************************.(((...(((..(((((.(((((.((((......((.(((....))).))))))))))).)))))..))).....)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 SRR060689
160x9_testes_total
 V116
male body		 V047
embryo
 SRR060662
9x160_0-2h_embryos_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR1106721
embryo_10-12h
 M028
head
 SRR060679
140x9_testes_total
.................................................................................................................CGGGGATGTTCTAGTTCTCA................................................. 20 3 3 5.00 15 2 6 2 2 2 1 0 0 0 0
................................................................................................................TCGGGGATGTTCTAGTTCTCA................................................. 21 3 1 2.00 2 1 0 1 0 0 0 0 0 0 0
.................................................................................................................CGGGGATGTTCTAGTTCTC.................................................. 19 3 18 0.83 15 3 6 2 0 1 1 2 0 0 0
....................................................................CGGCAAGGGAAAGTTGTTAA.............................................................................................. 20 3 13 0.77 10 0 0 5 1 1 0 3 0 0 0
................................................................................................................TCGGGGATGTTCTAGTTCTC.................................................. 20 3 4 0.75 3 3 0 0 0 0 0 0 0 0 0
................................................................................................................TCGGGGATGTTCTAGTTCT................................................... 19 3 20 0.20 4 3 0 0 0 0 0 0 0 1 0
....................................................................CCAGAAGGCAAAGTTGTTAA.............................................................................................. 20 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................TCGGGGATGTTCTAGTTC.................................................... 18 3 20 0.10 2 1 0 0 0 1 0 0 0 0 0
.................................................................................................................CGGGTACGTCCTCGTAGTCA................................................. 20 3 13 0.08 1 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................TTGTCGTCGTCGTCGTTG. 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:1075107-1075288 + dvi_8369 CCAC------C-----GAGGAAAAGGAGTGGCTG----CGTCAGCTGCGCACGCTGGCCGATCAGGTGAG----TTTAGCTGTTGCAGCTGTTGCGT-T-------------------------------------------------T----------C------------------------AA----------CAATTG----------------------------------------CTAATGCATTTA-------CG---------CGCGGCGGCA-------G----------------------------------------------------------------------------------------------------------------------------------------------------CCCCTGCAGGA---TCAACAGTTGCAACAGCAACAGGAACAACAGCAAC---------------------------------AACAACA---GCAGCAGCAGCAACA--
droMoj3 scaffold_6328:2053961-2054108 + CTCC------T-----GAGGAAAAGGAATGGCTG----CGCCAGCTGCGCGCGCTGGCTGATCAGGTGAG-----TT----GTGGCAGCTGTTGCATAT-------------------------------------------------T----------C------------------------GG----------CAATTGT----------------------------------------TGAC----------------------------------------------------------G-----------GAT-TCAT--------------------------------------------------------------------------------------------------------------------------------------TTGCAGCAGCCACAAGAGCAACAACATC---------------------------------TACAGCA---GCAGCAACAGCAAGC--
droGri2 scaffold_15245:11424918-11425102 - CTCG------C-----CGGGAAGAAGCCTAGCGA----GGTGGGCGTGCCGGCAGCGCCTACGC--------------------------------------------------------------CCACTATGCCTCCCTCT------------------------------------TT----AGCTGGCTATGG-----------------------CATG--TACCAG------------------------------------------------TT-------CTATC--------------------------CGGCTGCACAGCAG------C----------------------------------------------------------------------AG-------------------------CAACAACAGCAGCAACAACAGCAGCAGCAGCAGCAGCAACAACAGCAGC---------------------------------AGCAACA---GCAGCAGCAGCAACA--
droWil2 scf2_1100000004909:11059927-11060103 + ACAA------C-----AACAACAGCAAGTGGCTG----CTGCTGCTGCCACACCTTCAATTACAGAAG-------------------------------------------------------------------------------CT---CCACT------------------------ATCG--CCAGCATCTT-----------------------CGCCTCCGCCAC----------GTAATGCCA-----------------------------A-----------TACG----------CCAAATAGCGCCAA-TCAGT---------------------------------------------------------------------------------------------------------------C--------------GCAGCAGCAGCAGCAGCAACAACAGCAACAGCAGC---------------------------------AACAACA---ACAGCAGCAGCAACA--
dp5 XL_group1a:3277441-3277639 + CCACCGCGCCT-----GAGGAGAAGGCCTGGTTG----CGTCAGCTGCGGGACATGGCCGATGTGGTGAG-----TGA-------------------------------TCCACTCGAATCTCTCTGTGCAATTGTTTTCTCT------------------------------------TG----AC------------------------------------------CGA------GTTTTTGTTTGATTTT-------CGATTGGCAGGAGCT---------------------------------------------GCAGG---------------------------------------------------------------------------------------------------------------T--------------GCAGCAGCAACAGCAACAGGAGCTGCAGCAGCAGC---------------------------------AACAACA---GCAACAACAGCAACA--
droPer2 scaffold_77:231468-231660 - CGCC------T-----GAGGAGAAGGCCTGGTTG----CGTCAGCTGCGGGACATGGCCGATGTGGTGAG-----TGA-------------------------------TCCACTCGAATCTCTCTGTGCAATTGTTTTCTCT------------------------------------TG----AC------------------------------------------CGA------GTTTTTGTTTGATTTT-------CGATTGGCAGGAGCT---------------------------------------------GCAGG---------------------------------------------------------------------------------------------------------------T--------------GCAGCAGCAACAGCAACAGGAGCTGCAGCAGCAGC---------------------------------AACAACA---GCAACAACAGCAACA--
droAna3 scaffold_13117:3392247-3392428 + CTCC------G-----GAGGAGAAGGCCTGGCTG----CGTCAGCTCCGAGCTCTGGCCGATGTGGTAAG-----TAG-------------------------------TAG-----------------------------------TG---TCACG------------------------GTCG--CCC-TAATGT-----------------------CACGATCGCCAC----------TTAAACCTA-----------------------------------------TGTC----------CCACTTTCCAGCC--ACAAC---------------------------------------------------------------------------------------------------------------C--------------GGAACAGCAGCAGCAGCAGGACCCACTGCATCAGC---------------------------------AGCAACA---GCAACAGCAGCAGCT--
droBip1 scf7180000395839:108321-108496 + CATC------C-----GGGCAACAACA--ATCTG----CAGCAGCTGTGCACCGAG---AATCTGGTG-----------TTGGCGCCACCGCCGCAG-T-------------------------------------------------T----------C------------------------TG----------CGATTGCAACGATGC---------CA-----A---------------------------------------GCACGCGCCACAGCC-------GCATCTGCCAACTA-------------------------------------------------------------------------------------------------------------------------------------------------G---CCAACAGTATCATACACAGCAGCAACAACAGCAAC---------------------------------AGCAACA---GCAGCAGCAGCATCA--
droKik1 scf7180000302696:372249-372429 - CTCC------G-----GAAGAGAAGGCCTGGCTA----CGCCAGCTGCGCTCTCTGGCCGAGGTGGTGAG-----TTA-------------------------------TTA--------------------------------------AATG----AATTATTTAATTT-----------T-T----------GT-----------------------TTCAAAAAACAG----------CTAAAGGAATGC-------------------------------------------------------------------TACC---TTGCAG------C----------------------------------------------------------------------AG-------------------------CCTC------A---ACAGGAGCACCTACAGCAGCAGCAGCAGGAGCTGC---------------------------------AGGAGCA---GCAAGAGCAACAGCA--
droFic1 scf7180000454048:315750-315920 + CATC------AAGGACGAGCAGCAGGACAGCCGATCGGCAGCCGCT---CT-CATG---AATTTGGTG----------------GCAGCCGCC-----------------------------------------------------------------------------------------------------------------------------------------GAGTTTGGCTATATGCGTAATCAA-------C----------ACCA---------------------------------------------GCAGCCGCAGCAGCAACATC-----------------------------------------------------------------------------------------------------------A---GCAACAGTTGCATCACCAACAGCAACATCAGCAGC---------------------------------AGCAACA---GCAGCAGCAGCAACA--
droEle1 scf7180000491046:2812587-2812778 + CTAC------C-----T-GCAGCAGGAGCCACTG----CAGTTGCAACAGTCGCTGCCCTTGGGACTGAG-----T---------------------AC-------------------------------------------------TCAGCA----ACTTTTGCAGCTT-----------T-CA----------CGCCAGCAGCA-GGC---------TA---CCA-----------------------------------ACAC------GCAGCAA------TCCACCGTGGCTAGTTT---------------------G---CTGCAGC-----------------------------------------------------------------------------------------------------------------A---ACATCAGCAACAGCAGCAACAGCAGCAGCAGCAAC---------------------------------AACAACA---GCAGCAGCAGCAGCA--
droRho1 scf7180000779488:643604-643781 + CCCA------G-----GCACAGGAGCAGCATCTG----CAACAGCAACACCA-------------------------------------------------------------------------------------GCAGCAACAGCT---GCAGCTTC------------------------TG----------CAACTGCAGCA----GCAACAGCA--------------------------------------------------------GCAGCT-------GCAAC--------------------------AGCCAGTGCAGCAC------C----------------------------------------------------------------------ACCCGCAGCAG-----------CAGGT--------------GCAACAGTTGCAACACCAGCAGCAACAGTTGCAAC---------------------------------ACCAGCA---GCAGCAGCAGCAGCA--
droBia1 scf7180000302126:1332419-1332609 - CAAC------A-----A-----CAGCAGCAGCAG----CAGCAGCAGC-----------------------------------------AGCAGCA-----------------------------------------------G---------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAACAGTTGCAGCAGCAATTGCAGCAGCAGCAGCAGCAACCATCGCCCATGCTGGGCAGACCAGCAGCAGCCGCAGCAGACATGCAGCGATATGT--------------------GCAGAGGATGCAACAGCAGCAGCAGCAGC---------------------------------AACAACA---GCAGCAGCAGCAACA--
droTak1 scf7180000415659:11942-12108 - CGCC------C-----GAGGAGAAGGCCTGGCTG----CGTCAGCTGCGCTCCCTGGCCGATGTGGTGGG-----TCAAACGTGGCAGCAGCCGCCC-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAAAGCATCTAATTGCGATT-------A-----------AAC-TTCTT---------------------------------------------------------------------------------------------------------------T--------------GCAGCAGCCCCAGCAGGAGCAATTGCAATTGCATC---------------------------------ATCAAGT---GCAGCAGCAGCAGCA--
droEug1 scf7180000409462:2883626-2883810 + CAGC------C-----GGGCAACAACA--ATCTG----CAGCAGCTGTGCACCGAT---AATCTGGTG-----------TTGGCGCCACCGCCGCAG-T-------------------------------------------------T----------C------------------------TG----------CGATTGCAACGATGC---------CA-----A---------------------------------------GCACGCGCCGCAGCC-------GCATCTGCCAACTAGCC-----------------------------AATACC-----------------------------------------------------------------------------------------------------------A---TCCACAGCAGCAACAGCAACAGCAGCATCAGCAGC---------------------------------AGCAGCA---ACAGCAGCAGCAGCA--
dm3 chrX:3800380-3800569 - CCAT------G-----GAACAACAGCAGATGCAG----CAGCAGCTGCACTACGATCCGCATCAGGAG-------------------------------------------------------------------------------CT---GCAGT------------------------TCGAG----------CAGCATCAGCC----GCACCAGTC--------------------------------------------------------GCATCA-------GCAGC--------------------------AGCAGCTGCAGCATCAGCAGC----------------------------------------------------------------------------AGCAT-----------CAGCT-----GCAACA---TCAGCAGCAACATCAGCAGCAGCAGCAGTATCAGC---------------------------------AGCAGCA---GCACCAGCAGCAGCA--
droSim2 2l:12309428-12309603 + CAGC------G-----G--CAACAAGAGCAGCAG----CATCAGCAGCAGCA-------------------------------------------------------------------------------------------A---------------CA---------ACTATGCCATTACTG--CTGGCAACAA-----------------------CACT--TGCCAA------CAATTCCCATCATCAA-------CACTTGAG---CACAACAG------------------------------------------------CAGCAGCAAC---------------------------------------------------------------------------------------------------A-----GC---A---ACTGCAGCAGCAACTGCAGCAGCAGCAGCAGCAAC---------------------------------AGCAACT---GCAGCAGCAACAGCA--
droSec2 scaffold_16:1431778-1431947 + TCAC------C-----GCAGCAACG-TCCACCAA----CAGCGATATCGC-CGCTGGCT---CAGGTG-----------CAGCAGCAGCAGCAGCAA-C-----------A-----------------------GCAGTTGCAACAGCA---GCAGCAACA------------------------G----------CTACAGCAG---------------------------------------------------------------------------------------------------------------------------CTGCAGC-----------------------------------------------------------------------------------------------------------------A---ACAGCAGTTCCAGCAGCAACAGCAGTTCCAGCAAC---------------------------------AACAGTTGCAGCAGCAGCAACAGCT--
droYak3 X:8106909-8107082 + CAAC------AT----GGGCAAAAGGAGCA----------------------CATTTCCG------------------------------------T-TTCAAGCAATTTCCGCGAGAGTCTCTCT------------------------------------------------------------------------CCAGCAGC-----------------------CGAGTGCC---ATTTGATTGGTAAGCAATTTACG-CAG------GCGACAG---------------------------------------------------CAG--------------------------------------------------------------------------------------------------------CAACAGC---A---GCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAAC---------------------------------AGCAGCA---GCAACAGCAGCAACA--
droEre2 scaffold_4929:11373260-11373450 + CCGC------C-----GTATTGAATGCTTGGGTG----GGC-GGATGCACGGG-CGGCCAATTGGGGGTCGGAGGTCAGGGGTCGCAACTGGCACTC-A-------------------------------------------------T---CA----T------CAACT------------------------------------------------------------------------CAAACT----------------------------CAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCAACAACAACTGCAGCAGCAGCAACAGCAACAACAGCAGCGGGAACAACATTAACAACAAGA---AGGGCATCGGCAACATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CCAC------C-----GAGGAAAAGGAGTGGCTG----CGTCAGCTGCGCACGCTGGCCGATCAGGTGAG----TTTAGCTGTTGCAGCTGTTGCGT-T-------------------------------------------------T----------C------------------------AA----------CAATTG----------------------------------------CTAATGCATTTA-------CG---------CGCGGCGGCA-------G----------------------------------------------------------------------------------------------------------------------------------------------------CCCCTGCAGGA---TCAACAGTTGCAACAGCAACAGGAACAACAGCAAC---------------------------------AACAACA---GCAGCAGCAGCAACA--SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................CA-------G----------------------------------------------------------------------------------------------------------------------------------------------------CCCCTGCAGGA---TCAACAGTTGC....................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................CA-------G----------------------------------------------------------------------------------------------------------------------------------------------------CCCCTGCAGGA---TCAACAGT.......................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
CCAC------C-----GAGGAAAAGGAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
..........C-----GAGGAAAAGGAGTGGCTG----C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
....................AAAAGGAGTGGCTG----CGTCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCAACAGCAACAGGAACAACAGCAA.............................................................2911.001000000000000000000000000000000000000010000000000000000000000000
...................GAAAAGGAGTGGCTG----CGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000010000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGGAACAACAGC...............................................................2220.501000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC---------------------------------AACAACA---GCAGCA...........19200.102000000000000000000000000000000000010000000000000000000000000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA---GCAGCAGCAGCAACA--22200.102002000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACA---GCAGCAGCAGCAACA--21200.102002000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---------------------------------AACAACA---GCAGCAGCAGCA.....22200.102000000000000000001000000000000010000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAC---------------------------------AACAACA---GCAGCAGCA........23200.051000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC---------------------------------AACAACA---GCAGCAGCAGCAAC...26200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---------------------------------AACAACA---GCAGCAGCAGCAACA--25200.051000000000000000000000000000000001000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAAC---------------------------------AACAACA---GCAG.............19200.051000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAAC---------------------------------AACAACA---GC...............21200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC---------------------------------AACAACA---GCAGCAGC.........21200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAAC---------------------------------AACAACA---GCAGCAGCAGCA.....27200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA---GCAGCAGCAGC......18200.051000000000000010000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA---GCAGCAGCAGCAAC...19200.051000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC---------------------------------AACAACA---GCAGCAGCA........21200.051000000000000000000000000000000001000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------AACAACA---GCAGCAGCAGCAA....21200.051000000000000000001000000000000000000000000000000000000000000000
droMoj3
CTCC------T-----GAGGAAAAGGAATGGCTG----CGCCAGCTGCGCGCGCTGGCTGATCAGGTGAG-----TT----GTGGCAGCTGTTGCATAT-------------------------------------------------T----------C------------------------GG----------CAATTGT----------------------------------------TGAC----------------------------------------------------------G-----------GAT-TCAT--------------------------------------------------------------------------------------------------------------------------------------TTGCAGCAGCCACAAGAGCAACAACATC---------------------------------TACAGCA---GCAGCAACAGCAAGC--SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................GTGAG-----TT----GTGGCAGCTGTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCAACAACATC---------------------------------TACAGC.....................2011.001001000
...................................................................................................................................................................................................................................................TGAC----------------------------------------------------------G-----------GAT-TCAT--------------------------------------------------------------------------------------------------------------------------------------TTGCAG..................................................................................1811.001000010
......................................................................................................................................................................................................ATTGT----------------------------------------TGAC----------------------------------------------------------G-----------GAT-TCAT--------------------------------------------------------------------------------------------------------------------------------------TT......................................................................................1911.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAAGAGCAACAACATC---------------------------------TACAGC.....................2511.001000001
.................................................................GTGAG-----TT----GTGGCAGCTGTTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGCA---GCAGCAACAGCA.....19200.051001000
droGri2
CTCG------C-----CGGGAAGAAGCCTAGCGA----GGTGGGCGTGCCGGCAGCGCCTACGC--------------------------------------------------------------CCACTATGCCTCCCTCT------------------------------------TT----AGCTGGCTATGG-----------------------CATG--TACCAG------------------------------------------------TT-------CTATC--------------------------CGGCTGCACAGCAG------C----------------------------------------------------------------------AG-------------------------CAACAACAGCAGCAACAACAGCAGCAGCAGCAGCAGCAACAACAGCAGC---------------------------------AGCAACA---GCAGCAGCAGCAACA--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................................................................................................................................................TT----AGCTGGCTATGG-----------------------CATG--TA...............................................................................................................................................................................................................................................................................................................................2011.00110
..........................................................................................................................................................................................GCTGGCTATGG-----------------------CATG--TACC.............................................................................................................................................................................................................................................................................................................................1911.00110
..............................GCGA----GGTGGGCGTGCCGGCAGCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGC---------------------------------AGCAACA---GCAGCA...........22200.05110
droWil2
ACAA------C-----AACAACAGCAAGTGGCTG----CTGCTGCTGCCACACCTTCAATTACAGAAG-------------------------------------------------------------------------------CT---CCACT------------------------ATCG--CCAGCATCTT-----------------------CGCCTCCGCCAC----------GTAATGCCA-----------------------------A-----------TACG----------CCAAATAGCGCCAA-TCAGT---------------------------------------------------------------------------------------------------------------C--------------GCAGCAGCAGCAGCAGCAACAACAGCAACAGCAGC---------------------------------AACAACA---ACAGCAGCAGCAACA--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---ACAGCAGCAGCAACA--18200.20400040
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------AACAACA---ACAGCAGCAG.......18200.15300030
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC---------------------------------AACAACA---ACAGCA...........20200.10200020
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------AACAACA---ACAGCAGCAGCAAC...22200.10200020
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAACAGCAGC---------------------------------AAC........................21200.10200020
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAACAGCAGC---------------------------------...........................21200.05100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAGCAACAGCAGC---------------------------------...........................20200.05100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACAGCAACA.................................................................22200.05100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------------------------------AACAACA---ACAGCAGCAGCA.....21200.05101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGC---------------------------------AACAACA---ACAGCAG..........22200.05101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------------------------------AACAACA---ACAGCAGCAGCAACA--24200.05100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---------------------------------AACAACA---ACAGCAGCAG.......21200.05100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGC---------------------------------AACAACA---ACAGC............21200.05100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCA.............................................................................18200.05101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACAGCAACAGCA..............................................................25200.05100001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGC---------------------------------AACAACA---ACAG.............21200.05101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAACAGCAGC---------------------------------A..........................22200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC---------------------------------AACAACA---ACAGCAGCAGCAA....26200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAGCAACAGCAG.............................................................21200.05100001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAACAACAGCA....................................................................24200.05101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------AACAACA---ACAGCAGCAGCAACA--23200.05100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAACAGCAACAGCA..............................................................24200.05100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAGCAACAGCAGC---------------------------------A..........................24200.05100010
dp5
CCACCGCGCCT-----GAGGAGAAGGCCTGGTTG----CGTCAGCTGCGGGACATGGCCGATGTGGTGAG-----TGA-------------------------------TCCACTCGAATCTCTCTGTGCAATTGTTTTCTCT------------------------------------TG----AC------------------------------------------CGA------GTTTTTGTTTGATTTT-------CGATTGGCAGGAGCT---------------------------------------------GCAGG---------------------------------------------------------------------------------------------------------------T--------------GCAGCAGCAACAGCAACAGGAGCTGCAGCAGCAGC---------------------------------AACAACA---GCAACAACAGCAACA--SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................GTCAGCTGCGGGACATGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030300000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAGGAGCT.......................................................................1912.0020000101000
........................................TCAGCTGCGGGACATGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020200000000
.........CT-----GAGGAGAAGGCCTGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAACAGGAGCTGCAGCAGCA..............................................................2711.0010100000000
........CCT-----GAGGAGAAGGCCTGGTTG----C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.....................GAAGGCCTGGTTG----CGTCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..ACCGCGCCT-----GAGGAGAAGGCCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.................................................................................................................................................................................................................................................................................................................................GCAGG---------------------------------------------------------------------------------------------------------------T--------------GCAGCAGCAACAG..................................................................................1920.5010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGAGCTGCAGCAGCAG.............................................................2020.5010010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---------------------------------AACAACA---GCAACAACAG.......22200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------------------------------AACAACA---GCAACAACAGCAAC...23200.0510100000000
droPer2
CGCC------T-----GAGGAGAAGGCCTGGTTG----CGTCAGCTGCGGGACATGGCCGATGTGGTGAG-----TGA-------------------------------TCCACTCGAATCTCTCTGTGCAATTGTTTTCTCT------------------------------------TG----AC------------------------------------------CGA------GTTTTTGTTTGATTTT-------CGATTGGCAGGAGCT---------------------------------------------GCAGG---------------------------------------------------------------------------------------------------------------T--------------GCAGCAGCAACAGCAACAGGAGCTGCAGCAGCAGC---------------------------------AACAACA---GCAACAACAGCAACA--SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGGAGCTGCAGCAGC...............................................................1921.503300000
............................................CTGCGGGACATGGCCGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAACAGGAGC........................................................................2311.001001000
..............................GTTG----CGTCAGCTGCGGGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAACAGGAGCTG......................................................................2211.001001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---------------------------------AACAACA---GCAACAACAGC......22200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------GCAGCAGCAACAGCAACA.............................................................................19200.051001000
droAna3
CTCC------G-----GAGGAGAAGGCCTGGCTG----CGTCAGCTCCGAGCTCTGGCCGATGTGGTAAG-----TAG-------------------------------TAG-----------------------------------TG---TCACG------------------------GTCG--CCC-TAATGT-----------------------CACGATCGCCAC----------TTAAACCTA-----------------------------------------TGTC----------CCACTTTCCAGCC--ACAAC---------------------------------------------------------------------------------------------------------------C--------------GGAACAGCAGCAGCAGCAGGACCCACTGCATCAGC---------------------------------AGCAACA---GCAACAGCAGCAGCT--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................AGGCCTGGCTG----CGTCAGCTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
................................TG----CGTCAGCTCCGAGCTCTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...C------G-----GAGGAGAAGGCCTGGCTG----CG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGGACCCACTGCATCAGC---------------------------------AGCAAC.....................2911.001010000
.............................GGCTG----CGTCAGCTCCGAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
........................GGCCTGGCTG----CGTCAGCTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAGC---------------------------------AGCAACA---GCAACAGC.........2330.331100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGC---------------------------------AGCAACA---GCAACAGCAGC......2350.201010000
droBip1
CATC------C-----GGGCAACAACA--ATCTG----CAGCAGCTGTGCACCGAG---AATCTGGTG-----------TTGGCGCCACCGCCGCAG-T-------------------------------------------------T----------C------------------------TG----------CGATTGCAACGATGC---------CA-----A---------------------------------------GCACGCGCCACAGCC-------GCATCTGCCAACTA-------------------------------------------------------------------------------------------------------------------------------------------------G---CCAACAGTATCATACACAGCAGCAACAACAGCAAC---------------------------------AGCAACA---GCAGCAGCAGCATCA--SizeHit CountTotal NormTotal
No Reads
droKik1
CTCC------G-----GAAGAGAAGGCCTGGCTA----CGCCAGCTGCGCTCTCTGGCCGAGGTGGTGAG-----TTA-------------------------------TTA--------------------------------------AATG----AATTATTTAATTT-----------T-T----------GT-----------------------TTCAAAAAACAG----------CTAAAGGAATGC-------------------------------------------------------------------TACC---TTGCAG------C----------------------------------------------------------------------AG-------------------------CCTC------A---ACAGGAGCACCTACAGCAGCAGCAGCAGGAGCTGC---------------------------------AGGAGCA---GCAAGAGCAACAGCA--SizeHit CountTotal NormTotal
No Reads
droFic1
CATC------AAGGACGAGCAGCAGGACAGCCGATCGGCAGCCGCT---CT-CATG---AATTTGGTG----------------GCAGCCGCC-----------------------------------------------------------------------------------------------------------------------------------------GAGTTTGGCTATATGCGTAATCAA-------C----------ACCA---------------------------------------------GCAGCCGCAGCAGCAACATC-----------------------------------------------------------------------------------------------------------A---GCAACAGTTGCATCACCAACAGCAACATCAGCAGC---------------------------------AGCAACA---GCAGCAGCAGCAACA--SizeHit CountTotal NormTotal
No Reads
droEle1
CTAC------C-----T-GCAGCAGGAGCCACTG----CAGTTGCAACAGTCGCTGCCCTTGGGACTGAG-----T---------------------AC-------------------------------------------------TCAGCA----ACTTTTGCAGCTT-----------T-CA----------CGCCAGCAGCA-GGC---------TA---CCA-----------------------------------ACAC------GCAGCAA------TCCACCGTGGCTAGTTT---------------------G---CTGCAGC-----------------------------------------------------------------------------------------------------------------A---ACATCAGCAACAGCAGCAACAGCAGCAGCAGCAAC---------------------------------AACAACA---GCAGCAGCAGCAGCA--SizeHit CountTotal NormTotal
No Reads
droRho1
CCCA------G-----GCACAGGAGCAGCATCTG----CAACAGCAACACCA-------------------------------------------------------------------------------------GCAGCAACAGCT---GCAGCTTC------------------------TG----------CAACTGCAGCA----GCAACAGCA--------------------------------------------------------GCAGCT-------GCAAC--------------------------AGCCAGTGCAGCAC------C----------------------------------------------------------------------ACCCGCAGCAG-----------CAGGT--------------GCAACAGTTGCAACACCAGCAGCAACAGTTGCAAC---------------------------------ACCAGCA---GCAGCAGCAGCAGCA--SizeHit CountTotal NormTotal
No Reads
droBia1
CAAC------A-----A-----CAGCAGCAGCAG----CAGCAGCAGC-----------------------------------------AGCAGCA-----------------------------------------------G---------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAACAGTTGCAGCAGCAATTGCAGCAGCAGCAGCAGCAACCATCGCCCATGCTGGGCAGACCAGCAGCAGCCGCAGCAGACATGCAGCGATATGT--------------------GCAGAGGATGCAACAGCAGCAGCAGCAGC---------------------------------AACAACA---GCAGCAGCAGCAACA--SizeHit CountTotal NormTotal
No Reads
droTak1
CGCC------C-----GAGGAGAAGGCCTGGCTG----CGTCAGCTGCGCTCCCTGGCCGATGTGGTGGG-----TCAAACGTGGCAGCAGCCGCCC-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAAAGCATCTAATTGCGATT-------A-----------AAC-TTCTT---------------------------------------------------------------------------------------------------------------T--------------GCAGCAGCCCCAGCAGGAGCAATTGCAATTGCATC---------------------------------ATCAAGT---GCAGCAGCAGCAGCA--SizeHit CountTotal NormTotal
No Reads
droEug1
CAGC------C-----GGGCAACAACA--ATCTG----CAGCAGCTGTGCACCGAT---AATCTGGTG-----------TTGGCGCCACCGCCGCAG-T-------------------------------------------------T----------C------------------------TG----------CGATTGCAACGATGC---------CA-----A---------------------------------------GCACGCGCCGCAGCC-------GCATCTGCCAACTAGCC-----------------------------AATACC-----------------------------------------------------------------------------------------------------------A---TCCACAGCAGCAACAGCAACAGCAGCATCAGCAGC---------------------------------AGCAGCA---ACAGCAGCAGCAGCA--SizeHit CountTotal NormTotal
No Reads
dm3
CCAT------G-----GAACAACAGCAGATGCAG----CAGCAGCTGCACTACGATCCGCATCAGGAG-------------------------------------------------------------------------------CT---GCAGT------------------------TCGAG----------CAGCATCAGCC----GCACCAGTC--------------------------------------------------------GCATCA-------GCAGC--------------------------AGCAGCTGCAGCATCAGCAGC----------------------------------------------------------------------------AGCAT-----------CAGCT-----GCAACA---TCAGCAGCAACATCAGCAGCAGCAGCAGTATCAGC---------------------------------AGCAGCA---GCACCAGCAGCAGCA--SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................ACAACAGCAGATGCAG----CAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2021.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAGCAGCAGCAGTATC...............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.................AACAACAGCAGATGCAG----CAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---TCAGCAGCAACATC.................................................................................1870.5740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ACAACAGCAGATGCAG----CAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGTATC...............................................................1850.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................CAGCATCAGCAGC----------------------------------------------------------------------------AGCAT-----------CAG...............................................................................................................21190.3770000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000103000
.........................................................................................................................................................................................................................GTC--------------------------------------------------------GCATCA-------GCAGC--------------------------AGCAG..............................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACATCAGCAGCAGCAGCAG...................................................................26120.2530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AACAGCAGATGCAG----CAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................GTC--------------------------------------------------------GCATCA-------GCAGC--------------------------AGC................................................................................................................................................................................................................................1750.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCAGCAACATCAGCAGC...........................................................................2050.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACA---TCAGCAGCAACATCAG...............................................................................2250.2010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATCAGCAGCAGCAGC.....................................................................20200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATCAGCAGCAGCAGCAGTT.................................................................2450.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACATCAGCAGCAGCAGC.....................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATCAGCAGCAGCAG......................................................................19200.1020000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACATCAGCAGCAGCAGCA....................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATCAGCAGCAGCA.......................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCAGCAGCAGCAGCA....................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------AGCAGCA---GCACCAGCAGCAG....21170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACATCAGCAGCAGCAGCAG...................................................................24190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACATCAGCAGCAGCAGCAG...................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................CAGCATCAGCAGC----------------------------------------------------------------------------AGCAT-----------C.................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACATCAGCAGCAGCAG......................................................................21200.0510000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACATCAGCAGC...........................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATCAGCAGCAGCAGCA....................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACATCAGCAGCAGCAGCA....................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................CAGCATCAGCAGC----------------------------------------------------------------------------AGCAT-----------CA................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---GCACCAGCAGCAGCA--21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACATCAGCAGCAGCAGC.....................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACATCAGCAGCA..........................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CAGC------G-----G--CAACAAGAGCAGCAG----CATCAGCAGCAGCA-------------------------------------------------------------------------------------------A---------------CA---------ACTATGCCATTACTG--CTGGCAACAA-----------------------CACT--TGCCAA------CAATTCCCATCATCAA-------CACTTGAG---CACAACAG------------------------------------------------CAGCAGCAAC---------------------------------------------------------------------------------------------------A-----GC---A---ACTGCAGCAGCAACTGCAGCAGCAGCAGCAGCAAC---------------------------------AGCAACT---GCAGCAGCAACAGCA--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................C---A---ACTGCAGCAGCAACT................................................................................17120.08100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC---------------------------------AGCAACT---GCAGCA...........18200.05100010000000000000
...................................................................................................................................................................................................................................................................................AACAG------------------------------------------------CAGCAGCAAC---------------------------------------------------------------------------------------------------A-----GC---A---AC.............................................................................................21200.05100000000000100000
.............................................................................................................................................................................................................................................................................................................................................GCAAC---------------------------------------------------------------------------------------------------A-----GC---A---ACTGCAGCA......................................................................................18200.05100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAAC---------------------------------AGCA.......................18200.05100000000001000000
droSec2
TCAC------C-----GCAGCAACG-TCCACCAA----CAGCGATATCGC-CGCTGGCT---CAGGTG-----------CAGCAGCAGCAGCAGCAA-C-----------A-----------------------GCAGTTGCAACAGCA---GCAGCAACA------------------------G----------CTACAGCAG---------------------------------------------------------------------------------------------------------------------------CTGCAGC-----------------------------------------------------------------------------------------------------------------A---ACAGCAGTTCCAGCAGCAACAGCAGTTCCAGCAAC---------------------------------AACAGTTGCAGCAGCAGCAACAGCT--SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGTTCCAGCAAC---------------------------------AACAGTT....................2511.0010100
...........................CCACCAA----CAGCGATATCGC-CGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------AACAGTTGCAGCAGCAGC.........1950.2010010
...................................................................................AGCAGCAGCAGCAA-C-----------A-----------------------GCA..........................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510001
droYak3
CAAC------AT----GGGCAAAAGGAGCA----------------------CATTTCCG------------------------------------T-TTCAAGCAATTTCCGCGAGAGTCTCTCT------------------------------------------------------------------------CCAGCAGC-----------------------CGAGTGCC---ATTTGATTGGTAAGCAATTTACG-CAG------GCGACAG---------------------------------------------------CAG--------------------------------------------------------------------------------------------------------CAACAGC---A---GCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAAC---------------------------------AGCAGCA---GCAACAGCAGCAACA--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAGCAGCAGCAAC---------------------------------AGC........................27200.05100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---------------------------------AGCAGCA---GCAACAGCA........20200.05101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................C---A---GCAGCAACAGCAGCAGCAGCA..........................................................................23200.05100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAAC---------------------------------AGC........................19200.05101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GCAGCAACAGCAGCAGCA.............................................................................19200.05101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAGCAGCA.................................................................22200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAAC---------------------------------AGCAGCA---GCA..............19200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGC---A---GCAGCAACAGC....................................................................................19200.05101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAACAGC.....................................................................21200.05100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---GCAACAGCAGCAAC...20200.05100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGC---A---GCAGCAACAGCA...................................................................................20200.05101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAAC---------------------------------AGCAGCA---GCAACAGC.........27200.05100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGC---A---GCAGCAACAGCAGCAGCA.............................................................................26200.05100010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---------------------------------AGCAGCA---GCAACAGC.........19200.05101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAAC---------------------------------AGCAGCA---GCA..............26200.05100010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---A---GCAGCAACAGCAGCAGCAGCA..........................................................................24200.05101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGCAGCAACAGCA....................................................................27200.05101000000000
droEre2
CCGC------C-----GTATTGAATGCTTGGGTG----GGC-GGATGCACGGG-CGGCCAATTGGGGGTCGGAGGTCAGGGGTCGCAACTGGCACTC-A-------------------------------------------------T---CA----T------CAACT------------------------------------------------------------------------CAAACT----------------------------CAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCAACAACAACTGCAGCAGCAGCAACAGCAACAACAGCAGCGGGAACAACATTAACAACAAGA---AGGGCATCGGCAACATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACTGCAGCAGC...............................................................1860.1710100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAACAACAGCAGC..........................................20200.1021100000
......................................................................................................................................................................................................................................................................................AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCAACAAC...........................................................................21130.0810100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACAACT.......................................................................19160.0610000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAACAGCAG...........................................20200.0511000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAGCAACAA.................................................20200.0510001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAAC...........................................................................18200.0511000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAACA..........................................................................19200.0510000010

Generated: 05/16/2015 at 11:38 PM