ID:

dvi_8352

 Coordinate:

scaffold_12928:966505-966655 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.3 -18.3 -17.9

Flybase annnotation

exon [dvir_GLEANR_17163:4]; CDS [Dvir\GJ16659-cds]; intron [Dvir\GJ16659-in]

Repeatable elements

NameClassFamilyStrand
(T)nSimple_repeatSimple_repeat+
mature
  1. scaffold_2379:37-60 -
  2. scaffold_4438:41-64 -
  3. scaffold_7671:35-58 -
  4. scaffold_12726:664682-664705 -
  5. scaffold_12758:215901-215924 -
  6. scaffold_12823:627259-627282 -
  7. scaffold_12855:7698516-7698539 -
  8. scaffold_12875:10895098-10895121 -
  9. scaffold_12875:12427526-12427549 -
  10. scaffold_12875:15612022-15612045 -
  11. dvi_8352  scaffold_12928:966567-966590 -
  12. scaffold_12932:587873-587896 -
  13. scaffold_12963:18771121-18771144 -
  14. scaffold_13042:2676622-2676645 -
  15. scaffold_13042:4231340-4231363 -
  16. scaffold_13047:773106-773129 -
  17. scaffold_13047:12686118-12686141 -
  18. scaffold_13049:3644859-3644882 -
  19. scaffold_13217:6561-6584 -
  20. scaffold_13324:1571125-1571148 -
  21. scaffold_12472:544602-544625 -
  22. scaffold_12723:4681802-4681825 -
  23. scaffold_12855:4101774-4101797 -
  24. scaffold_12875:207566-207589 -
  25. scaffold_12875:2037645-2037668 -
  26. scaffold_12928:5193871-5193894 -
  27. scaffold_12932:2020347-2020370 -
  28. scaffold_12963:16445637-16445660 -
  29. scaffold_12970:2658030-2658053 -
  30. scaffold_12970:3834362-3834385 -
  31. scaffold_12970:6018790-6018813 -
  32. scaffold_12970:10126406-10126429 -
  33. scaffold_13042:784004-784027 -
  34. scaffold_13042:1447663-1447686 -
  35. scaffold_13049:2111810-2111833 -
  36. scaffold_13049:8028672-8028695 -
  37. scaffold_13049:12452327-12452350 -
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCGCCCACATGACGCACGCACAAATTTTAATTAAACGCCGACAAATTGGAATTGAAACGCAAATCAAATTAGTCGCAACCACATTGCAATTGCCACAGCAACAACAACACACAAAAAAACAAAAAAAAAAAAAAAAAAAGAGCGAGAGAAAGAAAATACAAAACGTTATCTCATTCGCTTTTTGCATTTCCTCTTCCACAGCTGCCATTTAACGAAGCCCAACAAGCGTCGCAGCAGCAGCAGCAACAGCA
**************************************************...((((.(((((...........((((.....))))..((((....))))......................................((((((((((...................))))..))))))))))).))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M047
female body
 M027
male body		 SRR060667
160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
..................................................................................................CAACAACAACACAAAAAAACACCAAAAAAAAAAAAA..................................................................................................................... 36 3 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CAACACCACACAAAAAAAAAAAAAAAAAAAAAAAAA.................................................................................................................. 36 2 3 0.33 1 1 0 0 0 0 0
...................................................................................................................AAAACAAAAAAAAAAAAAAAAAAA................................................................................................................ 24 0 20 0.15 3 0 2 1 0 0 0
...................................................................................................................AAAACAAAAAAAAAAAAAAAAAA................................................................................................................. 23 0 20 0.05 1 0 0 0 1 0 0
.............................................................................................................................................TCAAGAGAAAGAAAATAC............................................................................................ 18 2 20 0.05 1 0 0 0 0 1 0
................................................................CAATTTTGTCGCAACCAAAT....................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

AGCGGGTGTACTGCGTGCGTGTTTAAAATTAATTTGCGGCTGTTTAACCTTAACTTTGCGTTTAGTTTAATCAGCGTTGGTGTAACGTTAACGGTGTCGTTGTTGTTGTGTGTTTTTTTGTTTTTTTTTTTTTTTTTTTCTCGCTCTCTTTCTTTTATGTTTTGCAATAGAGTAAGCGAAAAACGTAAAGGAGAAGGTGTCGACGGTAAATTGCTTCGGGTTGTTCGCAGCGTCGTCGTCGTCGTTGTCGT
**************************************************...((((.(((((...........((((.....))))..((((....))))......................................((((((((((...................))))..))))))))))).))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M027
male body		 SRR060666
160_males_carcasses_total
 SRR060658
140_ovaries_total
 V116
male body		 GSM1528803
follicle cells		 SRR060663
160_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
.GCCGTTGTACTGGGTGCGTGTT.................................................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
....GGTGCACTGGGAGCGTGTTTA.................................................................................................................................................................................................................................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0
.GCCGGGGTACTGTGTGCGTGTT.................................................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0
.....................................................................................CGTTAGCGGTGTCAATGTTGTTG............................................................................................................................................... 23 3 7 0.43 3 0 2 0 0 1 0 0 0
.GCTGGTGGACTGTGTGCGTGTT.................................................................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0
....GGGGTACTGGGTGCGTGTT.................................................................................................................................................................................................................................... 19 2 4 0.25 1 1 0 0 0 0 0 0 0
..CTGGTGTACTGTGTGCGGGTT.................................................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0
..CCTGTGTACTGGGTGCGTGTT.................................................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0 0
..................................................................................................GTTGTTGTTGTGTGTTTTT...................................................................................................................................... 19 0 5 0.20 1 0 0 0 1 0 0 0 0
........................................................................................................................................................................................GTAAAGGAGGAGTTGTGGACG.............................................. 21 3 6 0.17 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................CGTACAGTAGAAGGAGTCG................................................. 19 3 20 0.15 3 0 0 0 0 1 0 1 1
....................................................................................................TGTTGTTGTGTGTTTT....................................................................................................................................... 16 0 12 0.08 1 0 0 0 0 0 1 0 0
...TGGTGTACTGTGTGCGGGTT.................................................................................................................................................................................................................................... 20 3 17 0.06 1 1 0 0 0 0 0 0 0
.....TTGTACAGCGTGCGTGTT.................................................................................................................................................................................................................................... 18 2 17 0.06 1 1 0 0 0 0 0 0 0
.TCTGGTGTACTGTGTGCGTGTT.................................................................................................................................................................................................................................... 22 3 17 0.06 1 1 0 0 0 0 0 0 0
.....GTCTACTGTGTGCGTGTT.................................................................................................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................TTTTGCAATAGATTAAGACA........................................................................ 20 3 20 0.05 1 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:966455-966705 - dvi_8352 TCG-CCCACA----TGACGCACGC--------------------ACAAATTTTAATTAA--------ACGCCGA-CAAATT-------------------------------------------------------------------------------GG-----------------------A----ATTG--------AAACGCAAA-------------------------TCAA-ATTAGTCGCAACCA--------------------------------CAT---------------------------------------------------------------------------------------------------------------------------------------TGCAATTGCCACAGCAACAACAACA---------------------------CACA-------------------------AAAAAACA-------AAAAAAAAAAAAAAAAAAGAG--------CGAGAGAAAGAAAATACAAAACGT-----------TA------TCTCATTCGCT-------------------------------------------------T-TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----CATTTCCT------------------------------CTTCC---------------------------------------------------------------------A------------CAGCTGCCATTTAACGAAGCC------------------------------------CAACAAGCGTCGCAGC-AGCAGC--------------------AGCAACAGCA
droMoj3 scaffold_6496:19299844-19300098 - ACA-GCTACT----AATCATATTAATAAT-CATG-------------------------ATAACCAAGCGCTAG--------------------------------------------------C--TAATGATTC------------------------------------------------------------------TGATGCAAATCATGATCAAGAAAATAATGACAC---------------------------------AA--------------------------------------------CAACAACAACAACAGCACAAACCAACACAACAACAACAGC-----------------------------------------------------------------------------CACAACAA---------------------------------------ACA-------------------------CTGCTAA-------------------------------------CGATTGTAATACAACACAAACAAT-----------TA------CAACAACAGCA-------------------------------------------------G-CAGACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGATACAGC-TAATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAACAAAAACA-----------GCAACAACAACAGCTGCAGC-AGCAGA--------------------AGCTGCTGCA
droGri2 scaffold_15081:3541003-3541245 - AAA-AAATCC----AT--------------T-----AAAAT--------------------------------------------------------------------------------------TGT----------------------------------------------------------------------GC-----------------------------------------------------AGGAAATATACCAAA--------------------------------------------AAACAAAAAAAAAGGAAAAAAATCAAAAAACGAAAATCGCCACCACA-------------------------------------------------------AAAAATAAAGGAAAAACCAAAA-AAAAAAAAACA---------------------------ACAA-------------------------AAAATAAA-------TAAAATAAA-----------------------------------------------------------------------------------------------------AAAAAACACGGCGAAAGAGAAAAAGAA-------------------GGAAGGTAACGCACCAACACGTCCAG-----------------------------------------------------------------------------------------------------------------------------------------------------G----C-----CTAC------------------------------TCC-----------------------------------------------------------------------------A----CCCCTA-----------------------------------------------GCGATAACAGCAGCAGCAGC-AGCATC--------------------AGCATCAGCA
droWil2 scf2_1100000004590:2896473-2896732 + ACA-CACACA----CA-------------C-------------------ACACAC----ACACACAAGCGCAGA--------------------------------------------------C--AAA-G--------------AACA-----------------------------------------------------------GA-------------------------GCGA-AATACTTGCACACAAAGGGAATATAGAATACCGAAAACAGGAC--ACAA--------------------------------------AGCAAAACA----CAAA-------------------ATACAC-GA----------------------------------CGGCAACATGCCGTCGTTAGCAATAAATAAAACAGCACGCAAAGT-------------TGCCAACACGTT---------------------------------------------------------------------------------------------------------C-CAA------T--TGCTGGCA----------------------------------------------------ATCGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTATTGC-TGCTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATTCCAAGTGCA-TGGC------CAACATCAACAGCAGCAGC-AGCAGC--------------------AACACTTAAA
dp5 2:16046973-16047202 + CCA-CACACA----CA-------------C-------------------ACACAC----ACACAC-----------------------------------------TGGCA-TACTCGTACATA-TTT----------------------------------------------------------------------ATTT-----------------------------------------------------AAGGAATTTTCCTACACCCAAGACAGCAATAACAA---------------------------------------------------------------------------------------------------------------------------------------TGCAACTACAGAAACAACAACAACAAC----------------------------------------------------------------------------------------------------------------------------------CACGA------GAATATGAAGA-------------------------------------------------AGAAGCGA---------------------CTGACGCAATGGCACGTTTATGCCAC------------------------------------------------------------------------------------------------------------------------------------------------A----CGTGACCTGC------------------------------TTT-----------------------------------------------------------------------------A----CCGTTGGCGTTGGCCAG----------------------------GG------TCGGCGGCGGCGGTGGCGGC-GGCAGC--------------------GACAACGTCA
droPer2 scaffold_0:600786-601031 - ACA-AATACA----AATTACAC-------------------------------------A----------AAGA-------TAAATCAAGCCAAAAATAAATACATCA-----------------------------------------------------------------------------------------------------------------------------------A-AATATCAGTGGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA-AACACAAACAATAAAAAGAAAAACA------------AATA-------------------------AACAAACA-------AAAAGCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAGGAAA-AAGCGGAAAGGAAGGAAGCAGGGAGGCTGAAATTGCAACAGACATATTTGTGATAAACGCTGACAATTTGTGGCACGTTGAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGCCATAAAGTCCATC------------G------AAATGC-AGC-AC--------------------AACAACAGCA
droAna3 scaffold_13315:381-642 + CAA-ATATTA----GT----------------------------------------TGA----------------AATATT-------------------------------------------------------------------------------AA-----------------------G----ATTC--------AAAAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------TT-AT----------------------------------ATTCGATC--------------GCTTCTAATTT---------C---------------------------AGCAAATGCAACAGCAGCAACAACAACAACAGCAGCA-------GCAGCAGCAACAAATA-----ATGGCACA------------------------ACAGCAACCGCAATCTGTTCAACAACAACAGGTGATCACTCAGCGACATGTGATTAACACTTCCACGGCCCAAGGGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATCATTCAGAGCCACATGAT-GAAC---------------CTGCAGCAGA-AGCAGCAGCAAGTGTTGC--------ATGTCCAGCA
droBip1 scf7180000396691:792475-792743 + CAT-TACAGCCACACAAA-------------------------------ATGCGACCAA--------A-ACTGA-CAAATC-------------------------------------------------------------------------------AAAATTAAAGTGAACTGCAGGAGGGC----AAT------------------------------------------------GTTAATTGCAA-------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------TGTAATTGCACACACGGCAACAA----------------------------------------------------------GGCAACCA-------------------------------------------------------------------------------GCGCACATAAA-------------------------------------------------AGCACAAA---------------------CCCTTGCAGGAACACA---AAA----TCACA------------------GC----------------CAGCCAAGGAAATC----------------------------------------AG-----------------------CTTTTTGCTT-TTTTG-----------------------------------------------GCTTACC--CCTCTTCGCCGTCCCCTCTGCTGGTGAAATATG--------------------------C---G--------------------------------------C------------------------------------TAATTAGTGTGCGCGC-AGTG-------------CAGAAAAGGAGTGAGAGCT
droKik1 scf7180000302592:702796-703042 + CAT-ATAC-A----A---------------------------------CTGTAAGTTAA--------ATAACTG-AAGAA------------------------------------------------------TC-------------------------G-----------------------C----ATAC--------A-------------------------AAAACAAAACAAAAAAAGCCGC-----------------------------------------------------------------------------CAAAAAAATTCAAACAAAAATTGCAAG-----------------------------------------------------------------------------CAAAAC------------A---------------------------AACA-------------------------AAAATAAG-------AAACAAAAAATGA------------------------------AACA------A----------GA------GAGAACGAAAA-------------------------------------------------AGGAGCG-------------------ACGAAACAGCATCAGAAACAACAG-----------------------------------------------------------------------------------------------------------------------------------------------------T----T---------------------------------------------------------------------------AACTTTGGT---------------------------------GTATCAACAACAATTACAGAACGGCAAC---------------AAATCAT-CTTC---------------CATTAGCAAC-GGCATT--------------------AACAATAGTA
droFic1 scf7180000453949:665593-665805 + TCG-TCCACC----TAACACCGAC-----------------------------------A----------------ACAAT-----------------------------------------------AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATCAAAACATGAACAACAACCACAGCCACATCAACAATAATA-TC----------------------------------AACAATAATATCAACAATAGTAGCAACAACAGCCA----------------------------------------------------------------------------------------------------AATGAACA------------------------ATAACAACCACAA------CAACAACAACA-------------------------------------------------A-TCGCAACTCGGTGAAAAACTTTAATGAGATTC-----------------------------------------------------------------------------------------------------------------------------------------------------------CGT-------------------------------------------------------------------T--------------------CCCTCAGTT--------------------------------------------------------------------------TT----------------------------ACAAACAGA-TGCACT--------------------ACCAACAACA
droEle1 scf7180000491104:1520886-1521122 + ATT-ACCAAC--------------------T-----AATACCGCACAAAACACAC----A-----------------------------------------------C-AAA-TTTCGTGGAGAT--GGA-A--------------AACAACAACAACGGGG-----------------------T----ACT-CACAATCT-----------------------------------------------------AACCAAAA-----------------------------------------------------------------------------------------------------ATGCTT-AC----------------------------------AGCCGCCATACCAACAACGGCAGCTCCAGCAACCACAACAACAAC----------------------------------------------------------------------------------------------------------------------------------CTCAA------CAACAACAGCA-------------------------------------------------A-CATCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTACAAC-TTCTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTCCACACTAG-CTTCCAGCAGCAGCAACAGCAACAGCGGC-AGCAGC--------------------AGCAACAGCA
droRho1 scf7180000779558:41188-41491 - GTG-CCAATA----AAAACCAC-------------------------------------A-----------------AAAGTGAATTTTTTCGAAAGTGAAGAA---------------------------------------------AG-C--------------------------------------------------------------------G------AAAATAACGCCCGC--------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATG----------------------------------------------------------------------------------------------------------------------------------CT---------AAAAATCTAAA-------------------------------------------------A-C----------------------------------------------------AAAAGTAAACAAGCAACCAAAAG-CGAATTCTGTGTTATCGAAACGAGAGCAA-AAGCTAAAAGGAGCCAA----------------------------------------------------------T-AAAAAATAAAACA---------------GCGATGACGATGGCCGCCTGTTATGCCAACT--ACGACATGTCGTCCCTGTCGCACGGCATGTCGG--------------------------C---TCTGTCTGCCCTGCAGCAGCAACAGCAGCACAGCCAGGCG------------------------------------CAGCAGCAACA-CAGCCAGACGC--------------------AGCAGCAGCA
droBia1 scf7180000302143:1729052-1729277 + ACA-ACCACA----CAAA--------------------------------------------------CACCGAACCTACT-----------------------------------------------CCAATTCTATAC---------------------------ACACGAACTACGCAAACAAATCGAAT------------------------------------------------A---------------------------------------------------------CTATTTACACATGCT-----------------------------------ACAGACACAACAACA-TGCTA-CC----------------------------------A--------------AATTGCAACCAGAACAACAGCAACAGCAGT----------------------------------------------------------------------------------------------------------------------------------CACAA------CAACA---ACA-------------------------------------------------G-TCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAG-----------------------------------------------TTGAAATCCCTTTGGTACAAAAACGCCTTA-----------------------------------------------CAAATT------------------ATAGTGTAACCAGCAGCAGC-AGCAGC--------------------AGCAGCAGCA
droTak1 scf7180000415659:117712-117867 + TTT-CAATTA----AA----------------------------------------------------TGCCAAACAAATT-----------------------------------------------GGAAATTT------------------------------------------------------------------AAATGCAAA-------------------------TCAA-ATTAGCCGC-----------------------------------------------------CAACAAATGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGCCCCTCTGCATTCCG-----------------------------------------------------------------------------------------------------------------------------------------------------T----T---------------------------------------------------------------------------CTTTTCTGT---------------------------------GTACCACCAGCTGCCATTTGGCGAAGCC------------------------------------CAACAAGCGTTGCAGCTACCAAC--------------------GGCGGCAGCA
droEug1 scf7180000409796:83521-83722 - CCG-CACAAA----CA-------------C-------------------ACACAC----A-----------------------------------------------C-AAA-TTTCGTGGAGAT--GGA-----------------ACAGCAACTACGGGG-----------------------T----ACT-CACAATCT-----------------------------------------------------AACCAAAA------------------------------------------------------------------------------------------------------TGCTT-AC----------------------------------AGCCGCCATGTCAACAACGGCAGCTCCAACAACCACTACAACAAC----------------------------------------------------------------------------------------------------------------------------------CTCAA------CAACAACAGCA-------------------------------------------------A-CATCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTACAAC-TTCTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTCCACACTAG-CTTC---------------------CAGC-AGCAAC--------------------AGCGGCAGCA
dm3 chr3L:15818577-15818846 - CAC-ACAT-A----AA-------------C-------------------ACACAA----GCGTAT-----------------------------------------CGAAA-GACTGGTGCAGAC--AGA-G--------------AGAGA-CGCGAATGTG-----------------------A----ATT-AACAAACA-----------------------------------------------------AACAAAAA------------------------------------------------------------------------------------------------------TATTTTGCGAAAAAGACAAACACAAAAAGTAAAGCCAATAAAGTGTATTACATAAACAAACGGAGCTCCGATATCTA----------------------------------------------------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------TAAATATTATGGAAATCGCACCACT--GATCAA-----------------------------------------------------------------------------------------------------------------------------------------------------TAACGCCGTCGCT--GTCGTCAC---------------AGCCTCTGCC---------------------------------------------------------------------T------------CTGCCGC----------------------CGTCTCTGCCT-----------------CTGC--TAGCGTCGGC-AGTAGC--------------------AGCAAGGATG
droSim2 2r:16578282-16578466 + AACAACTGCA-------------------------------------------------------------------AAGG-------------------------------------------------------------------------------GG-----------------------A----AGT-------GT-----------------------------------------------------AACTCAAT------------------------------------------------------------------------------------------------------TAATT-AA----------------------------------TAACAATATACCAGCAGCAGCAGCGGCAGCAGCACCAGAAACATT----------------------------------------------------------------------------------------------------------------------------------AA---------CAAGAACAACA-------------------------------------------------A-A----------------------------------------------------CAAAATAATTAA------------------------------------------------------------------------------------------------------------GTAACAAAAG-TTTCAT-------------------------------------------------------------------A--------------------TTTGCAACGCCACAAAAACAA-AACGGGA-----------------------------------------------------------------------------C-AGAAACGCAGCAGC-AACAGG--------------------AGGAACAGCA
droSec2 scaffold_6:3012650-3012883 - CAT-ACCGCACTCACAAA---TTACAAAC-TAATACAATACCGCACAAA---CAT----A-----------------------------------------------C-AAA-TTTCGTGGAGAT--GGA-----------------ACAGCAACAACGGGG-----------------------T----ACT-CACAATCT-----------------------------------------------------AACCAAAA------------------------------------------------------------------------------------------------------TGCTT-AC----------------------------------AGCCGCCATATCAACAACGGCAGCTCCAACAACCACAACAACAAC----------------------------------------------------------------------------------------------------------------------------------CTCAA------CAACAACAGCA-------------------------------------------------A-CATCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTACAAC-TTCTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTCCACAATAG-CTTC------------------CAGCGGC-AACAGC--------------------AGCACCAGCA
droYak3 2L:4902788-4903033 + ATA-TGGTA-------------------------------CAGCACAAAAATAAAATAA--------ACGCCGCAAGAATT-----------------------------------------------TGAATTTTGCATCCCACGAACATCAACGAC--------------------------------------------------------------------------------------GGACGT-----------------------------------------------------CAGCAGA-----------------------------------------------------------A-GC----------------------------------AGCAGCCGAAGCAGCAACAGCAATAACAGGAGAAGCAGCAGCAGC----------------------------------------------------------------------------------------------------------------------------------AATAA------AAACAGAAAAA-------------------------------------------------A-CACTAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGAACAAC-AACAGAAATAACA---------------GCAGCGGC---------------AGCAGCTGCG---------------------------------------------------------------------A------------CAGCAGT----------------------AAAAGAGGCAA-----------------CAAC--AAGCAGCG--------------------CACAGCGGCAATAACAGAG
droEre2 scaffold_4784:6438174-6438422 - CAA-ATTTCA----AT----------------------------------------ATAAC-------CACCAAGC--ATT-------------------------GGACA-GTCAAGTACAGTATTT---A--TT----------GGAGA-C--------------------------------------------------------------------G------AAAACAATACTCGT--------AAACT--------------------------------CAATTGAATTGACAATTCACAAATGCT-----------------------------------GCAAT--------------------------------------------------------------------------------------------AA----------------------------------------------------------GAAATACACAACAGTAAAATTAAAACTT--------------------------------------------------------------------------------------------------------------------------AGCAAGTGACTGAGAAAATTTAGAGGAAATCACTCCACTTTGGTCAG-----------------------------------------------------------------------------------------------------------------------------------------------------T----CAAATGCTGC------------------------------A-----------------------------------------------------------------------------GTACCAGCAACCGCA---------------------------------------------ACAGCAACAGCAACAACAGC-AGCAGC--------------------AGCAACAGCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TCG-CCCACA----TGACGCACGC--------------------ACAAATTTTAATTAA--------ACGCCGA-CAAATT-------------------------------------------------------------------------------GG-----------------------A----ATTG--------AAACGCAAA-------------------------TCAA-ATTAGTCGCAACCA--------------------------------CAT---------------------------------------------------------------------------------------------------------------------------------------TGCAATTGCCACAGCAACAACAACA---------------------------CACA-------------------------AAAAAACA-------AAAAAAAAAAAAAAAAAAGAG--------CGAGAGAAAGAAAATACAAAACGT-----------TA------TCTCATTCGCT-------------------------------------------------T-TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----CATTTCCT------------------------------CTTCC---------------------------------------------------------------------A------------CAGCTGCCATTTAACGAAGCC------------------------------------CAACAAGCGTCGCAGC-AGCAGC--------------------AGCAACAGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACA-------AAAAAAAAAAAAAAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.153102000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACA-------AAAAAAAAAAAAAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000001000000000000000000000000000000000000000000000
droMoj3
ACA-GCTACT----AATCATATTAATAAT-CATG-------------------------ATAACCAAGCGCTAG--------------------------------------------------C--TAATGATTC------------------------------------------------------------------TGATGCAAATCATGATCAAGAAAATAATGACAC---------------------------------AA--------------------------------------------CAACAACAACAACAGCACAAACCAACACAACAACAACAGC-----------------------------------------------------------------------------CACAACAA---------------------------------------ACA-------------------------CTGCTAA-------------------------------------CGATTGTAATACAACACAAACAAT-----------TA------CAACAACAGCA-------------------------------------------------G-CAGACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGATACAGC-TAATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAACAAAAACA-----------GCAACAACAACAGCTGCAGC-AGCAGA--------------------AGCTGCTGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAACACAAACAAT-----------TA------CA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CACAACAA---------------------------------------ACA-------------------------CTGCTAA-------------------------------------CG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAA---------------------------------------ACA-------------------------CTGCTAA-------------------------------------CGATTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCTGCAGC-AGC.................................21120.172100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCTGCAGC-AGCA................................23120.081000010
droGri2
AAA-AAATCC----AT--------------T-----AAAAT--------------------------------------------------------------------------------------TGT----------------------------------------------------------------------GC-----------------------------------------------------AGGAAATATACCAAA--------------------------------------------AAACAAAAAAAAAGGAAAAAAATCAAAAAACGAAAATCGCCACCACA-------------------------------------------------------AAAAATAAAGGAAAAACCAAAA-AAAAAAAAACA---------------------------ACAA-------------------------AAAATAAA-------TAAAATAAA-----------------------------------------------------------------------------------------------------AAAAAACACGGCGAAAGAGAAAAAGAA-------------------GGAAGGTAACGCACCAACACGTCCAG-----------------------------------------------------------------------------------------------------------------------------------------------------G----C-----CTAC------------------------------TCC-----------------------------------------------------------------------------A----CCCCTA-----------------------------------------------GCGATAACAGCAGCAGCAGC-AGCATC--------------------AGCATCAGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGC-AGCATC--------------------..........19200.05110
droWil2
ACA-CACACA----CA-------------C-------------------ACACAC----ACACACAAGCGCAGA--------------------------------------------------C--AAA-G--------------AACA-----------------------------------------------------------GA-------------------------GCGA-AATACTTGCACACAAAGGGAATATAGAATACCGAAAACAGGAC--ACAA--------------------------------------AGCAAAACA----CAAA-------------------ATACAC-GA----------------------------------CGGCAACATGCCGTCGTTAGCAATAAATAAAACAGCACGCAAAGT-------------TGCCAACACGTT---------------------------------------------------------------------------------------------------------C-CAA------T--TGCTGGCA----------------------------------------------------ATCGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTATTGC-TGCTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATTCCAAGTGCA-TGGC------CAACATCAACAGCAGCAGC-AGCAGC--------------------AACACTTAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------ATCGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTATTGC-TGC..........................................................................................................................................................................................................................................................1911.00100010
.....................................................................................................................................................................................................................................................................ATATAGAATACCGAAAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGC-AGCAGC--------------------AACA......21200.10200020
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAGCAGCAGC-AGCAGC--------------------A.........22200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAACAGCAGCAGC-AGCAG...............................21200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAGCAGCAGC-AGCA................................19200.05100010
.......ACA----CA-------------C-------------------ACACAC----ACACACAAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAGCAGCAGC-AGCAGC--------------------AACA......24200.05101000
dp5
CCA-CACACA----CA-------------C-------------------ACACAC----ACACAC-----------------------------------------TGGCA-TACTCGTACATA-TTT----------------------------------------------------------------------ATTT-----------------------------------------------------AAGGAATTTTCCTACACCCAAGACAGCAATAACAA---------------------------------------------------------------------------------------------------------------------------------------TGCAACTACAGAAACAACAACAACAAC----------------------------------------------------------------------------------------------------------------------------------CACGA------GAATATGAAGA-------------------------------------------------AGAAGCGA---------------------CTGACGCAATGGCACGTTTATGCCAC------------------------------------------------------------------------------------------------------------------------------------------------A----CGTGACCTGC------------------------------TTT-----------------------------------------------------------------------------A----CCGTTGGCGTTGGCCAG----------------------------GG------TCGGCGGCGGCGGTGGCGGC-GGCAGC--------------------GACAACGTCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............A-------------C-------------------ACACAC----ACACAC-----------------------------------------TGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGCGGCGGTGGCGGC-GGC.................................21200.0510100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGGCGGCGGTGGCGGC-....................................19200.0510100000000
droPer2
ACA-AATACA----AATTACAC-------------------------------------A----------AAGA-------TAAATCAAGCCAAAAATAAATACATCA-----------------------------------------------------------------------------------------------------------------------------------A-AATATCAGTGGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA-AACACAAACAATAAAAAGAAAAACA------------AATA-------------------------AACAAACA-------AAAAGCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAGGAAA-AAGCGGAAAGGAAGGAAGCAGGGAGGCTGAAATTGCAACAGACATATTTGTGATAAACGCTGACAATTTGTGGCACGTTGAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGCCATAAAGTCCATC------------G------AAATGC-AGC-AC--------------------AACAACAGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGTGGCACGTTGAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------.................................................................................1911.001010000
droAna3
CAA-ATATTA----GT----------------------------------------TGA----------------AATATT-------------------------------------------------------------------------------AA-----------------------G----ATTC--------AAAAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------TT-AT----------------------------------ATTCGATC--------------GCTTCTAATTT---------C---------------------------AGCAAATGCAACAGCAGCAACAACAACAACAGCAGCA-------GCAGCAGCAACAAATA-----ATGGCACA------------------------ACAGCAACCGCAATCTGTTCAACAACAACAGGTGATCACTCAGCGACATGTGATTAACACTTCCACGGCCCAAGGGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATCATTCAGAGCCACATGAT-GAAC---------------CTGCAGCAGA-AGCAGCAGCAAGTGTTGC--------ATGTCCAGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGATTAACACTTCCACGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCAATCTGTTCAACAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGTTGC--------ATGTCCAGT.1911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA-------GCAGCAGCAACAAATA-----AT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACAACAGCAGCA-------GCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2740.251010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA-------GCAGCAGCAACAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.201000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAACAACAGCAGCA-------GCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2760.171100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAACAGCAGCA-------GCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2670.141010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAACAACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102000002
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCA-------GCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102020000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCA-------GCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102020000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCA-------GCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACAACAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCA-------GCAGCAGCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCA-------GCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCA-------GCAGCAGCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCA-------GCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGCAGCA-------GCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAACAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAGCAGCA-------GCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAGCAGCA-------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAGCAGCA-------GCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAACAACAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAGCAGCA-------GCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAGCA-------GCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
droBip1
CAT-TACAGCCACACAAA-------------------------------ATGCGACCAA--------A-ACTGA-CAAATC-------------------------------------------------------------------------------AAAATTAAAGTGAACTGCAGGAGGGC----AAT------------------------------------------------GTTAATTGCAA-------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------TGTAATTGCACACACGGCAACAA----------------------------------------------------------GGCAACCA-------------------------------------------------------------------------------GCGCACATAAA-------------------------------------------------AGCACAAA---------------------CCCTTGCAGGAACACA---AAA----TCACA------------------GC----------------CAGCCAAGGAAATC----------------------------------------AG-----------------------CTTTTTGCTT-TTTTG-----------------------------------------------GCTTACC--CCTCTTCGCCGTCCCCTCTGCTGGTGAAATATG--------------------------C---G--------------------------------------C------------------------------------TAATTAGTGTGCGCGC-AGTG-------------CAGAAAAGGAGTGAGAGCTSizeHit CountTotal NormTotal
No Reads
droKik1
CAT-ATAC-A----A---------------------------------CTGTAAGTTAA--------ATAACTG-AAGAA------------------------------------------------------TC-------------------------G-----------------------C----ATAC--------A-------------------------AAAACAAAACAAAAAAAGCCGC-----------------------------------------------------------------------------CAAAAAAATTCAAACAAAAATTGCAAG-----------------------------------------------------------------------------CAAAAC------------A---------------------------AACA-------------------------AAAATAAG-------AAACAAAAAATGA------------------------------AACA------A----------GA------GAGAACGAAAA-------------------------------------------------AGGAGCG-------------------ACGAAACAGCATCAGAAACAACAG-----------------------------------------------------------------------------------------------------------------------------------------------------T----T---------------------------------------------------------------------------AACTTTGGT---------------------------------GTATCAACAACAATTACAGAACGGCAAC---------------AAATCAT-CTTC---------------CATTAGCAAC-GGCATT--------------------AACAATAGTASizeHit CountTotal NormTotal
No Reads
droFic1
TCG-TCCACC----TAACACCGAC-----------------------------------A----------------ACAAT-----------------------------------------------AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATCAAAACATGAACAACAACCACAGCCACATCAACAATAATA-TC----------------------------------AACAATAATATCAACAATAGTAGCAACAACAGCCA----------------------------------------------------------------------------------------------------AATGAACA------------------------ATAACAACCACAA------CAACAACAACA-------------------------------------------------A-TCGCAACTCGGTGAAAAACTTTAATGAGATTC-----------------------------------------------------------------------------------------------------------------------------------------------------------CGT-------------------------------------------------------------------T--------------------CCCTCAGTT--------------------------------------------------------------------------TT----------------------------ACAAACAGA-TGCACT--------------------ACCAACAACASizeHit CountTotal NormTotal
No Reads
droEle1
ATT-ACCAAC--------------------T-----AATACCGCACAAAACACAC----A-----------------------------------------------C-AAA-TTTCGTGGAGAT--GGA-A--------------AACAACAACAACGGGG-----------------------T----ACT-CACAATCT-----------------------------------------------------AACCAAAA-----------------------------------------------------------------------------------------------------ATGCTT-AC----------------------------------AGCCGCCATACCAACAACGGCAGCTCCAGCAACCACAACAACAAC----------------------------------------------------------------------------------------------------------------------------------CTCAA------CAACAACAGCA-------------------------------------------------A-CATCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTACAAC-TTCTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTCCACACTAG-CTTCCAGCAGCAGCAACAGCAACAGCGGC-AGCAGC--------------------AGCAACAGCASizeHit CountTotal NormTotal
No Reads
droRho1
GTG-CCAATA----AAAACCAC-------------------------------------A-----------------AAAGTGAATTTTTTCGAAAGTGAAGAA---------------------------------------------AG-C--------------------------------------------------------------------G------AAAATAACGCCCGC--------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATG----------------------------------------------------------------------------------------------------------------------------------CT---------AAAAATCTAAA-------------------------------------------------A-C----------------------------------------------------AAAAGTAAACAAGCAACCAAAAG-CGAATTCTGTGTTATCGAAACGAGAGCAA-AAGCTAAAAGGAGCCAA----------------------------------------------------------T-AAAAAATAAAACA---------------GCGATGACGATGGCCGCCTGTTATGCCAACT--ACGACATGTCGTCCCTGTCGCACGGCATGTCGG--------------------------C---TCTGTCTGCCCTGCAGCAGCAACAGCAGCACAGCCAGGCG------------------------------------CAGCAGCAACA-CAGCCAGACGC--------------------AGCAGCAGCASizeHit CountTotal NormTotal
No Reads
droBia1
ACA-ACCACA----CAAA--------------------------------------------------CACCGAACCTACT-----------------------------------------------CCAATTCTATAC---------------------------ACACGAACTACGCAAACAAATCGAAT------------------------------------------------A---------------------------------------------------------CTATTTACACATGCT-----------------------------------ACAGACACAACAACA-TGCTA-CC----------------------------------A--------------AATTGCAACCAGAACAACAGCAACAGCAGT----------------------------------------------------------------------------------------------------------------------------------CACAA------CAACA---ACA-------------------------------------------------G-TCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAG-----------------------------------------------TTGAAATCCCTTTGGTACAAAAACGCCTTA-----------------------------------------------CAAATT------------------ATAGTGTAACCAGCAGCAGC-AGCAGC--------------------AGCAGCAGCASizeHit CountTotal NormTotal
No Reads
droTak1
TTT-CAATTA----AA----------------------------------------------------TGCCAAACAAATT-----------------------------------------------GGAAATTT------------------------------------------------------------------AAATGCAAA-------------------------TCAA-ATTAGCCGC-----------------------------------------------------CAACAAATGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGCCCCTCTGCATTCCG-----------------------------------------------------------------------------------------------------------------------------------------------------T----T---------------------------------------------------------------------------CTTTTCTGT---------------------------------GTACCACCAGCTGCCATTTGGCGAAGCC------------------------------------CAACAAGCGTTGCAGCTACCAAC--------------------GGCGGCAGCASizeHit CountTotal NormTotal
No Reads
droEug1
CCG-CACAAA----CA-------------C-------------------ACACAC----A-----------------------------------------------C-AAA-TTTCGTGGAGAT--GGA-----------------ACAGCAACTACGGGG-----------------------T----ACT-CACAATCT-----------------------------------------------------AACCAAAA------------------------------------------------------------------------------------------------------TGCTT-AC----------------------------------AGCCGCCATGTCAACAACGGCAGCTCCAACAACCACTACAACAAC----------------------------------------------------------------------------------------------------------------------------------CTCAA------CAACAACAGCA-------------------------------------------------A-CATCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTACAAC-TTCTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTCCACACTAG-CTTC---------------------CAGC-AGCAAC--------------------AGCGGCAGCASizeHit CountTotal NormTotal
No Reads
dm3
CAC-ACAT-A----AA-------------C-------------------ACACAA----GCGTAT-----------------------------------------CGAAA-GACTGGTGCAGAC--AGA-G--------------AGAGA-CGCGAATGTG-----------------------A----ATT-AACAAACA-----------------------------------------------------AACAAAAA------------------------------------------------------------------------------------------------------TATTTTGCGAAAAAGACAAACACAAAAAGTAAAGCCAATAAAGTGTATTACATAAACAAACGGAGCTCCGATATCTA----------------------------------------------------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------TAAATATTATGGAAATCGCACCACT--GATCAA-----------------------------------------------------------------------------------------------------------------------------------------------------TAACGCCGTCGCT--GTCGTCAC---------------AGCCTCTGCC---------------------------------------------------------------------T------------CTGCCGC----------------------CGTCTCTGCCT-----------------CTGC--TAGCGTCGGC-AGTAGC--------------------AGCAAGGATGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................T-----------------------------------------CGAAA-GACTGGTGCAGAC--AGA-G--------------AGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000300000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................A----GCGTAT-----------------------------------------CGAAA-GACTGGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AGA-G--------------AGAGA-CGCGAATGTG-----------------------A----ATT-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AGA-G--------------AGAGA-CGCGAATGTG-----------------------A----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGAGCTCCGATATCTA----------------------------------------------------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------T.....................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................AA----GCGTAT-----------------------------------------CGAAA-GACTGGTGCAGAC--.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................AA----GCGTAT-----------------------------------------CGAAA-GACTGGTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......T-A----AA-------------C-------------------ACACAA----GCGTAT-----------------------------------------CGAAA-GACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACT--GATCAA-----------------------------------------------------------------------------------------------------------------------------------------------------TAACGCCGTCGCT--GT...............................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................GCGTAT-----------------------------------------CGAAA-GACTGGTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAAATCGCACCACT--GATC.......................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC--TAGCGTCGGC-AGTAGC--------------------AGCAAG....2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCACCACT--GATCAA-----------------------------------------------------------------------------------------------------------------------------------------------------TAACGCC.........................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCGCACCACT--GATCAA-----------------------------------------------------------------------------------------------------------------------------------------------------TAACGCC.........................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCACT--GATCAA-----------------------------------------------------------------------------------------------------------------------------------------------------TAACGC..........................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................TGCGAAAAAGACAAACACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGC--TAGCGTCGGC-AGTAGC--------------------AGC.......2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CAT-A----AA-------------C-------------------ACACAA----GCGTAT-----------------------------------------CGAAA-GA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................GACTGGTGCAGAC--AGA-G--------------AGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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......................................................A----GCGTAT-----------------------------------------CGAAA-GACTGGTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..............................................................TAT-----------------------------------------CGAAA-GACTGGTGCAGAC--AGA-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TATTACATAAACAAACGGAGCTCCGATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................GAATGTG-----------------------A----ATT-AACAAACA-----------------------------------------------------AACAAAAA------------------------------------------------------------------------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................A----GCGTAT-----------------------------------------CGAAA-GACTGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................GA-CGCGAATGTG-----------------------A----ATT-AACAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................CACAA----GCGTAT-----------------------------------------CGAAA-GACTGGTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................A-GACTGGTGCAGAC--AGA-G--------------AGAGA-CG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................AC--AGA-G--------------AGAGA-CGCGAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................CAGAC--AGA-G--------------AGAGA-CGCGAATGTG-----------------------A----A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TAT-----------------------------------------CGAAA-GACTGGTGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TGCAGAC--AGA-G--------------AGAGA-CGCGAATGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................CTGGTGCAGAC--AGA-G--------------AGAGA-CGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................................................................................................................................AGA-CGCGAATGTG-----------------------A----ATT-AACAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................CGAAA-GACTGGTGCAGAC--AGA-G--------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................GTAT-----------------------------------------CGAAA-GACTGGTGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................C--AGA-G--------------AGAGA-CGCGAATGTG-----------------------A----A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................AAA-GACTGGTGCAGAC--AGA-G--------------AGAGA-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................A-GACTGGTGCAGAC--AGA-G--------------AGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTCGCT--GTCGTCAC---------------AGCC......................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.......T-A----AA-------------C-------------------ACACAA----GCGTAT-----------------------------------------CGAAA-GAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................AA-GACTGGTGCAGAC--AGA-G--------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.......T-A----AA-------------C-------------------ACACAA----GCGTAT-----------------------------------------CGAAA-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
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.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---------------AGCCTCTGCC---------------------------------------------------------------------T------------CTGCCGC----------------------CG...............................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................GAC--AGA-G--------------AGAGA-CGCGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTA----------------------------------------------------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------TAAATATTATGGAA........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................A-CGCGAATGTG-----------------------A----ATT-AACAAACA-----------------------------------------------------AA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................AACA-----------------------------------------------------AACAAAAA------------------------------------------------------------------------------------------------------TATTTTGCGAAAAAGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCACCACT--GATCAA-----------------------------------------------------------------------------------------------------------------------------------------------------TAACGCCGTCG.....................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
droSim2
AACAACTGCA-------------------------------------------------------------------AAGG-------------------------------------------------------------------------------GG-----------------------A----AGT-------GT-----------------------------------------------------AACTCAAT------------------------------------------------------------------------------------------------------TAATT-AA----------------------------------TAACAATATACCAGCAGCAGCAGCGGCAGCAGCACCAGAAACATT----------------------------------------------------------------------------------------------------------------------------------AA---------CAAGAACAACA-------------------------------------------------A-A----------------------------------------------------CAAAATAATTAA------------------------------------------------------------------------------------------------------------GTAACAAAAG-TTTCAT-------------------------------------------------------------------A--------------------TTTGCAACGCCACAAAAACAA-AACGGGA-----------------------------------------------------------------------------C-AGAAACGCAGCAGC-AACAGG--------------------AGGAACAGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------------------------------------------------GTAACAAAAG-TTTC.........................................................................................................................................................................................................................................................1570.14100000000001000000
droSec2
CAT-ACCGCACTCACAAA---TTACAAAC-TAATACAATACCGCACAAA---CAT----A-----------------------------------------------C-AAA-TTTCGTGGAGAT--GGA-----------------ACAGCAACAACGGGG-----------------------T----ACT-CACAATCT-----------------------------------------------------AACCAAAA------------------------------------------------------------------------------------------------------TGCTT-AC----------------------------------AGCCGCCATATCAACAACGGCAGCTCCAACAACCACAACAACAAC----------------------------------------------------------------------------------------------------------------------------------CTCAA------CAACAACAGCA-------------------------------------------------A-CATCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTACAAC-TTCTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTCCACAATAG-CTTC------------------CAGCGGC-AACAGC--------------------AGCACCAGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC----------------------------------------------------------------------------------------------------------------------------------CTCAA------CAACAACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
droYak3
ATA-TGGTA-------------------------------CAGCACAAAAATAAAATAA--------ACGCCGCAAGAATT-----------------------------------------------TGAATTTTGCATCCCACGAACATCAACGAC--------------------------------------------------------------------------------------GGACGT-----------------------------------------------------CAGCAGA-----------------------------------------------------------A-GC----------------------------------AGCAGCCGAAGCAGCAACAGCAATAACAGGAGAAGCAGCAGCAGC----------------------------------------------------------------------------------------------------------------------------------AATAA------AAACAGAAAAA-------------------------------------------------A-CACTAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGAACAAC-AACAGAAATAACA---------------GCAGCGGC---------------AGCAGCTGCG---------------------------------------------------------------------A------------CAGCAGT----------------------AAAAGAGGCAA-----------------CAAC--AAGCAGCG--------------------CACAGCGGCAATAACAGAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CAA-ATTTCA----AT----------------------------------------ATAAC-------CACCAAGC--ATT-------------------------GGACA-GTCAAGTACAGTATTT---A--TT----------GGAGA-C--------------------------------------------------------------------G------AAAACAATACTCGT--------AAACT--------------------------------CAATTGAATTGACAATTCACAAATGCT-----------------------------------GCAAT--------------------------------------------------------------------------------------------AA----------------------------------------------------------GAAATACACAACAGTAAAATTAAAACTT--------------------------------------------------------------------------------------------------------------------------AGCAAGTGACTGAGAAAATTTAGAGGAAATCACTCCACTTTGGTCAG-----------------------------------------------------------------------------------------------------------------------------------------------------T----CAAATGCTGC------------------------------A-----------------------------------------------------------------------------GTACCAGCAACCGCA---------------------------------------------ACAGCAACAGCAACAACAGC-AGCAGC--------------------AGCAACAGCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTCAG-----------------------------------------------------------------------------------------------------------------------------------------------------T----CAAATGCTGC------------------------------A-----------------------------------------------------------------------------GTACC................................................................................................................2511.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTGC------------------------------A-----------------------------------------------------------------------------GTACCAGCAACCGC.......................................................................................................2311.0010100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAGC-AGCAGC--------------------A.........22200.1020001010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAGC-AGCAGC--------------------..........21200.0510010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAGC-AGCAGC--------------------AG........21200.0510000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGC-AGCAGC--------------------AGCAACAGC.23200.0511000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGC-AGCAGC--------------------AGCAAC....24200.0510100000

Generated: 05/16/2015 at 11:28 PM