ID:

dvi_8351

 Coordinate:

scaffold_12928:965648-965798 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ16659-cds]; exon [dvir_GLEANR_17163:4]; intron [Dvir\GJ16659-in]

Repeatable elements

NameClassFamilyStrand
(CAGT)nSimple_repeatSimple_repeat+
(CTG)nSimple_repeatSimple_repeat+
TART_DVLINEJockey-
mature
  1. scaffold_12723:1310585-1310608 -
  2. scaffold_12726:64691-64714 -
  3. scaffold_12726:928754-928777 -
  4. scaffold_12855:2508061-2508084 -
  5. scaffold_12875:19362730-19362753 -
  6. dvi_8351  scaffold_12928:965772-965795 -
  7. scaffold_12928:2273297-2273320 -
  8. scaffold_12928:6713107-6713130 -
  9. scaffold_12963:4509916-4509939 -
  10. scaffold_12963:6887961-6887984 -
  11. scaffold_13042:3355878-3355901 -
  12. scaffold_13047:716063-716086 -
  13. scaffold_13047:10045479-10045502 -
  14. scaffold_13049:1088276-1088299 -
  15. scaffold_13049:7474409-7474432 -
  16. scaffold_13049:8629752-8629775 -
  17. scaffold_13049:9177851-9177874 -
  18. scaffold_13049:18393587-18393610 -
  19. scaffold_13052:1894815-1894838 -
  20. scaffold_13052:1903580-1903603 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAATAACGGTAATCACAAGAAGGACAAGCGCAGCAGCCATTATAATTCAGGTGAGCAACAGCAGCAGCAACAGCAGCAGCAGCAGCAGCTAGCAACATGTTGCTAATGAGCGAGCAATATGAAGTAAAATAGAAAAGAAAAGTAGTGCATACTTTTGGGCAGCGGGTTTTAAACAAATGCTGTGACTGACAGACTGATTGACTGACTGACTGACTAATTGAACAATGCTAGTTGTCTAAAAAACTGAAATG
**************************************************((.((..((((((((.((....)).)).(((((....))).))..(((((((((........)))))))))...((((((.......(((((((.....))))))).........))))))......))))))..)).))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M028
head
 M047
female body
 SRR060672
9x160_females_carcasses_total
 M027
male body		 SRR060686
Argx9_0-2h_embryos_total
 SRR060680
 9xArg_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 V116
male body
................AAGAAGGACAAGCGCAGCAGCC..................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGAACAATGCTGGTTGTTT.............. 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CTGACTGTCTAATTAAAC............................ 18 2 20 0.55 11 0 5 0 0 4 0 0 0 0 1 0 0 0 1
.............................................................................................................................................................................................................CTGACTGTCTAATTGAAACAT......................... 21 3 9 0.33 3 0 0 0 2 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................TGGGGCAGCGGGGTTTATAC............................................................................. 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TGGGGCAGCGGGTTTGATAC............................................................................. 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGAACAATGCTGGTTGTTTC............. 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................AGCAACAGCAGCAGCAACAGCAGC.............................................................................................................................................................................. 24 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGAACAATGCTGGTTGTATC............. 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GCAGCAACAGCAGCAGCAGCAGC..................................................................................................................................................................... 23 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGAACAATGCTTGTTGTTT.............. 19 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGAACAAAGCTGGTTGTATA............. 20 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................GCAGCAGCAGCAGCAGCTAG............................................................................................................................................................... 20 0 19 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................AACAGCAGCAGCAGCAGCAGC.................................................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................GCAACAGCAGCAGCAACAGCAGCA............................................................................................................................................................................. 24 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................AGCAGCAGCAACAGCAGCAGC........................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................AGCAACAGCAGCAGCAACAGCAGCAGCA.......................................................................................................................................................................... 28 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................AGCAGCAACAGCAGCAGCAGCA....................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGAACAACGCTGGCTGTCT.............. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................AGCAGCAGCAACAGCAGCAGCA.......................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................CAGCAACAGCAGCAGCAGCAGC..................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

GTTATTGCCATTAGTGTTCTTCCTGTTCGCGTCGTCGGTAATATTAAGTCCACTCGTTGTCGTCGTCGTTGTCGTCGTCGTCGTCGTCGATCGTTGTACAACGATTACTCGCTCGTTATACTTCATTTTATCTTTTCTTTTCATCACGTATGAAAACCCGTCGCCCAAAATTTGTTTACGACACTGACTGTCTGACTAACTGACTGACTGACTGATTAACTTGTTACGATCAACAGATTTTTTGACTTTAC
**************************************************((.((..((((((((.((....)).)).(((((....))).))..(((((((((........)))))))))...((((((.......(((((((.....))))))).........))))))......))))))..)).))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 SRR060670
9_testes_total
 SRR060666
160_males_carcasses_total
................................................................................................................TCGCTATACTTCATTTTA......................................................................................................................... 18 1 1 1.00 1 1 0 0
............................................................................................................TCTCTTGTAATACTTCATTTTA......................................................................................................................... 22 3 5 0.20 1 0 1 0
.............................................................................................................................................................................................................................TCTTACGATCAACGGATTG........... 19 3 20 0.05 1 1 0 0
..................................................................................................................................................................................................ACTAACTGACTGACTGACTG..................................... 20 0 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:965598-965848 - dvi_8351 CAAT------------------------AACGGTA----ATCACA--------A----------------------G-----A--AGGACA--AGCGCAGCAGCC--AT-TAT---AATTCAGGTGAG----------------------------CAACAGC---AGCAGCAACAGCAGCAGCAGCAG---CA-------------------------------------------------------------------------------GCT-------AGCAACATG--------------TTGCTAATGAGCGAGCAATATGAAG------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATAGAAAAGAAAAGTA---------------------------------GTGCATACT---------------------------------------------TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCAGC------------------------GGGTTTTAAACAAATGCTGT-----------------------------------------------------------------------------------------------------------GA----CTGACAGACTGATTGACTGACTGAC--------TGACT--------AA----TTGAACAATGCTAGTT----GTCTAAAAAACTGAAATG
droMoj3 scaffold_6540:16946520-16946780 + CAGT------------------------AGCGACG----GCAGCA--------G----------------------C-----A----------------------GCAGGAGCA-G---AA---------G---CA----------------GCAGCAGTAGC---GACAGCAGCAGCAGTAG---CGA---------------------------------------------------------------------CAGCAGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGAGCAG-------------------------------------------------------------------------------------------------------------------CAGC--A-------------------------------------------------------------------------------------------------------------------------------------------------------GGAG--------------CA---------GCAGCAGTAATACAGCGCATCTTGACTGACGACGTCGACTGGG--------GCGCGCTCAATGGCTCACTAAACTTTTGA--------------------------------------ATAAAAGCAGG-CATGCAGT---------------------------------------------------------------C----GCTTGTCGG------------------GCGGGCTGGCTG------------GCTGGCTGGCTGGCTGGCTGGCT--------GGCTGGCTGG------CTGGCT----GGCTGGCTG-------TC
droGri2 scaffold_14853:9295862-9296087 - CGTTGTGTTGTTATTTGATTGTTGCCAGAGCAG-------------------------------------------------------------------T--------------------------------------------------------AGC---AGCAGCAGC------AGCAACG---GCAGCAGCAGC---------------------------------AGCAGCAGTAGCAGCA---GCAGC------------------------AGCAGCAAC------------------------------------ATGAAG------------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGGAAA---------------------------------------------------------------------------AGGAAAACG----------------------------------------------------------------------TCGTCCAAATGG----------G------GAAATGAGAAAAA--------------------------------------CTGCACACATTGGCT---------------------------------------------------------------------GGTTGTTTGTCACGCTGCTCTGTCACA-------------------------------------------------------------------------TGACTGACTG----ACTGACTGACTGACTGA----------------------------CTGA------TTAAC--------------------TGA
droWil2 scf2_1100000004514:1993977-1994172 + AGC-------------------------AACATC------------------------------------------------------------------------------------------------------------------------AGAAGCAAC---AACAGCAA------CAG---------------------------------------------------------------CA---GC---------------------------AGCAACAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT------------------------------------ATC----AAAC---------------------------------CAACAAGCAACAGAAAAAAGG---------------------------------------------------------------------------------------------------------------------------------------------------------AAGCAATTTCA-----------------------------------------------------------------------------------------------------------------------GGCT--AAAT-----------------------------------------------TTAGTTTAAATGCCTACCCGTTCATTCCAGCCATTGGCCGTTTGCCGG------------------AGAGA------------CTGACTGACTGACTGAC--------TGACTCGCTGGATGA----CTCG------TTGAC--------TGACG-----ACTTG
dp5 XR_group8:3709124-3709285 - CAGC------------------------AGCAGCA----GCAGCA--------G----------------------C-----A-------------------GAC--AGCGGCCGC---CA---------C---TA----------------GCTCCAACAAC---AACAGCAACAGCAACAA---CAA---------------------------------------------------------------------CAACAGCAATCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC---------------------------------AGACAAGCAAC---------------------------------------------------------------------------------------------------------------------------------------------------------GGGAA--------------CA---------ACAACGAGACAAC-------------------------------------------------GGTT-CCTGCACCTTTGGGCAGCAGCGGCC------------------------ATGCTAGTGCTGC-----------------------------------------------------------------------------------------------------------CA----ATG-------------------------------------------------------------------------------------GC
droPer2 scaffold_21:1288447-1288634 - CCAA------------------------AACCAGA----TGAAGA--------T------------------------------------------------GAA--GACGACAAA---AA---------G---GA----------------GCCACAACAGC---GGCAGCAGCAGCAGCAG---CAA---------------------------------------------------------------------CAGCAGCAACAAGCTACC-------TGCAACATG--------------T----------------------TG------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGCA-----------------------------------------------------------------------------------------------------------------------GGTA--AAAA-----------------------------------------------T-------GTTG------------------CCTTTTGTTATTTGCCGACATCCAACCACAACTGGCTCTGG----CTGGCTGGCTGGCTGGCTGT--------------------------------CTGG------CT----------------GG------CT
droAna3 scaffold_12929:911680-911822 + CCAT------------------------AACGGAGAACAATC-CA--------C----------------------G-----A--CCCACA--CACACAAAGGTC--ATCTTCAAT---CC---------G---TA----------------TCCCTACCAGC---AACAGCAACAGCATCAGCA---TCAGCA------------------------------------------------------------------CCAGCAACATGTCCAGGAACAGGAGCAAC------------------------------------ATGTCG------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTGGAGGAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------AA
droBip1 scf7180000396589:2060506-2060674 - CAAC------------------------AACAGCA----ACAACT--------T----------------------G-----T--GGG-----AGCGCAGCA---GCAACAGCA----------------------ACAGATCCTG-------------------------------------------------------------ATTCAGCAGCAACAA---CCACA---------------GCA---GCAGCAACAGCA---------------------------GATATTGCAGCAAAAGTTGCCC-------------------------------------------------------------------------------------------ATCGATCCGCAACAGCAGCAAC---------------------AACA------------AC---------------------------------------------------------------------------------------------------------A-----------------------------------------GCAGCAGCAGCAAA-----------------------TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCAAC------------------------AGGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--TAA
droKik1 scf7180000302686:1552489-1552734 + CAGG------------------------CAG-ACA----GCCAGACTGGCGACGGTGGCATATTCCCGTGGGGAGCTGCATTTAA-------------------------------AAGGCATTTAAGCCACAAAA----------------TCTCAAGCAGC---AACAGCAA------------CAA---CA---------GC--------CAGCAACAA------------------------------------TTACAGCAAG-------------------------------------------------TAGGGGAGATTAATTCAAGCTGATCGG---AAAAGCTGGAATACTCTAAAAAAGATTTTTAAAAGATTTCTGTAAAATTTAAACTCTTTAATTCACAAAAAAAAAACTATAA---------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGAAGAAATTA
droFic1 scf7180000453940:65473-65645 + AGAA------------------------A----------------------------------------------------------------------------------------------------------------------------CTACGGGAACAGCGGCAGC------AGCGACAACAG---------------------------------------------------------------------CTGCAAAAATGAGCTGAC-------GGAAGCGAG--------------C---------------GATACGATG------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCCACGAGAAG------TGAATG---------------------TCTTCTGGGGGA----------------------TTGACTGACTG----GCTGACTAACTGACTGAC--------TGACT--------AA----CTGAGTAA--CTGAGT----AACTGACTGACTGAATTA
droEle1 scf7180000491193:71263-71515 + CAAC------------------------AACAAGA----GTTACA--------T----------------------T-----TAA-------------------------------AAAAAAAGAAAAACACA--------------------------------------------------------------------------------------------------------------------------------------------------CACTCACAT--------------------------------------------------------------------------------------------------------------------TCA---CCGAAAAAAA------ACAACAACAATAAT----------CACGCGCGGCAA--CGCGGCACGCAGCACCTGCTTTAAAAAGAAGTGCGAGTGGGGGGAGCGAGGTTAAAAAAGTATTGAAAACTGGAGAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT------------------------------CC------------------------AG-----------------------------------------------------------------------------------------TTGTCTGATTGATAC------------------GATGA----CTGACTGACTAACTGACTGACTGAT--------TGACT--------AA----CTCA------CTGACT----GTCTAACTGACTGACTGA
droRho1 scf7180000780178:26582-26730 - CAAC------------------------ATCAGCA----ACAGCA--------G----------------------C-----A---------------------------------------------------------------------------------------TC------AGCAACA---GCAGCATCAGC---------------------------------AACAGCA------------GA-----------------ATC----AACAGCAACAACAGG------------------------------------TTA------------TGCA--------------------------------------------------------ATTG---TACAATAATA------ACAACAACAACAACAGTAACAA-------------------------------------------------------------------------AA---------------------------------AGAA---------------------------------GCG-----------------------------------------------------------------------------------------------------------------------------------------------CAAGCGTAACAACA-----------------------------------------------------------------------------------------------------------A-----AAACAAAAGCTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA
droBia1 scf7180000302408:2042625-2042792 - CGTT------------------------GACAGTG----AACACG--------G----------------------A-----G--GGGAC-CAGGAGCAGCA---G-----------------------------------------------------------------------------------CAGCAGCAGCAACACCCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCAACAGCA------GCAGCAACAGCAAC----------TGC--------------------CAC-----------------------------------------------------------------------------------------------------------------------------CTCCTG--CCTTGAAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------ATGACAAACTG----ACTGACTGACTGACTGAC--------TGACT--------GA----CTGA------GTGACTGATGGCCCGACTGTCTG--CAA
droTak1 scf7180000415660:122960-123081 - CAAT------------------------GGCGTCT-----CCGCA--------G----------------------C-----A-------------------GAC--AACTTTT----------------------ACGGA---------------CAGCAGC---AGCAGCAACAGCAGCAG---------------------------------------------------------------CA---GA-----------------GCTACC-------AGCAACATG--------------T---------------AAGTAGAAC------------A-------------------------------------------------------------------------------TTAAAA---------------------------------A---------------------------------------------------------------------------------------------------------CAAGAAAGG---------AAGCT--------ACC---------------------------------------------TTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC
droEug1 scf7180000409466:3091974-3092162 + TGAT------------------------AACAACA----ATCAGC-------------------------------TACAGCTAC-------------------------------CAGCCAAGTGGACCATA-------------------------------------------------------------------------------------------------------AAA------------AA-----------------GTA----ACCAGCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGGCAGAGAGGC----TCTTAAAAAGCAGCAGTAGCAGCGGGCAAAAGCTGCGAAACGGGCGGAAAAGAAAAGGAAAATTTCAAATGAAGCGCA---------------------------------TTGCATTTA---------------------------------------------TCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTCTC------------------------GAGCTCTCAACGA--------------------------------------------------------------------------------------------------------GA----------------------------------------------------------------------------------------------TG------CT
dm3 chrX:10512415-10512584 - CAAC------------------------ACTAGCA----ATCACA--------A----------------------G-----A----------------------ACAACAGCA-A---AC---------G---CTGC-------------AGT---CGC---AGCAGCAGC------AGC------------------AGCAG------------------CAGCTGCA---------------GTAGCAGC---------------------------AGCAGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------AG-------------------------------------------------------------------------------------------------------------------CAGC--A---------------------AC---------GCTAG--CGTCGGCAGCAGCAT--------------------------------------------------------------------------------GTCCAAAACAAGTAGCGGTAATCCAGCA--------------------------------------------------------------------------------------------------GCAGC------------------------AGGTG--CAACAAATGCCGC-----------------------------------------------------------------------------------------------------------GA-------------------------------------------------------------------------------------------ATG
droSim2 3r:3574966-3575162 - CAAT------------------------CACAATC----ATCACA--------T----------------------G-----C--------CAAGAGCGGTA---GCATCAGCG----------------------GCAGAATTTCAAA-------------------------------------------------------------------------------------------------------------------------GCC----ATCGGCCACAT--------------------------------------------------------------------------------------------------------------------CCG---CCCAACAGCA------ACAACAGCAGCAAC----------AGC--------------------AAC------------------------------------AGC----AAAT---------------------------------GCGTAAGAAAGACAAAGATAGATCGAATAGTAGTT--------GC---------ATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTGGTAGTCATGTTGGTGCTGGTAGCGGTAGTCAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAG--TGT
droSec2 scaffold_13:1772649-1772898 - ATGT------------------------TGCTGCG----GTGGCT--------G----------------------G-----T--GG-------------------CACTTGTT----------------------GCGGCTTGCTGCGGTTGC------------CGCTA------------------------------CTG------------------CTACTGCAACTGCAACTGCAGCGGCA---GCGGC------------------------AGCAGCAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC---------------------------------------T--------------------------------------------------------------------------------------GCGTG--TCAATTAGC-G---TTGATGATGCACAGTGAAATAGATTTCGCGC--A-GCTTGTTTCAATTCCAATTCGTTCGACAATTGTTACAGCTAAAGATCTACAAAACAT-CAGCGCCTATCAAGTGGAAGTGTCA-----------------------------------------------------------------------------------------------------------------------AGTG--T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACAAAACAAAAACG
droYak3 2R:15026131-15026354 + CACT------------------------CTCCGCC----GCCCCC--------T----------------------C-----G--G--------------GA---ACAACAGCA----------------------ACATGTTGTTAGGTCAGC------------CGCAG------------------CAGCAGCAGCAACAA---------------------------------CAAGAGCAACTGCAAC---------------------------AGCAGCAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------ACGA------------AC---------------------------------------------------------------------------------------------------------A---------------------TC---------TCTAGGCCATTGGCAGTG---TG-----------------------GC--ATGCAA----------------------------------------------ATGGGAGCTGTGCAGCGTAGTTCCAACGGC-------------------------------------------------TTGGAGCAGGGAGCTGGAT-------------TCAGTCTATCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAATAATTCTGCTT----GTTGGAGAAACTG--TAG
droEre2 scaffold_4690:4615484-4615636 + GCAG------------------------T--------------------------------------------------------------------------------------------------------------------------------CGC---AGCAGCAGC------AGC------------------AGCAG------------------CAGCTGCAGTAGCAGCAGCAGCAGCA---GCAGC------------------------AGCAGCAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAG--CGTCGGCAGCAGCAT--------------------------------------------------------------------------------GTCCAAAACAAGCAGCGGTAATCCAGCAGCAGCAGCA-----------------------------------------------------------------------------------------------------------------------GGTG--CAACAAATGCCGCGAATGCCGC---------------TGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAAT------------------------AACGGTA----ATCACA--------A----------------------G-----A--AGGACA--AGCGCAGCAGCC--AT-TAT---AATTCAGGTGAG----------------------------CAACAGC---AGCAGCAACAGCAGCAGCAGCAG---CA-------------------------------------------------------------------------------GCT-------AGCAACATG--------------TTGCTAATGAGCGAGCAATATGAAG------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATAGAAAAGAAAAGTA---------------------------------GTGCATACT---------------------------------------------TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCAGC------------------------GGGTTTTAAACAAATGCTGT-----------------------------------------------------------------------------------------------------------GA----CTGACAGACTGATTGACTGACTGAC--------TGACT--------AA----TTGAACAATGCTAGTT----GTCTAAAAAACTGAAATGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................A--------A----------------------G-----A--AGGACA--AGCGCAGCAGCC--...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AG----------------------------CAACAGC---AGCAGCAACAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.153003000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................GCAGCAACAGCAGCAGCAGCAG---C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102002000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................GCAGCAGCAGCAG---CA-------------------------------------------------------------------------------GCT-------AG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20190.051000000000000000000000000000000100000000000000000000000000000000
............................................................................................................................................................................AACAGCAGCAGCAGCAG---CA-------------------------------------------------------------------------------GC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................G----------------------------CAACAGC---AGCAGCAACAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................AGC---AGCAGCAACAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000001000000000000000000000000000000
..............................................................................................................................AG----------------------------CAACAGC---AGCAGCAACAGCAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................AGCAGCAACAGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000100000000000000000000000000000000000000000000000000
................................................................................................................................................................AGC---AGCAGCAACAGCAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................CAGCAACAGCAGCAGCAGCAG---C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000001000000000000000000000000000000000
droMoj3
CAGT------------------------AGCGACG----GCAGCA--------G----------------------C-----A----------------------GCAGGAGCA-G---AA---------G---CA----------------GCAGCAGTAGC---GACAGCAGCAGCAGTAG---CGA---------------------------------------------------------------------CAGCAGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGAGCAG-------------------------------------------------------------------------------------------------------------------CAGC--A-------------------------------------------------------------------------------------------------------------------------------------------------------GGAG--------------CA---------GCAGCAGTAATACAGCGCATCTTGACTGACGACGTCGACTGGG--------GCGCGCTCAATGGCTCACTAAACTTTTGA--------------------------------------ATAAAAGCAGG-CATGCAGT---------------------------------------------------------------C----GCTTGTCGG------------------GCGGGCTGGCTG------------GCTGGCTGGCTGGCTGGCTGGCT--------GGCTGGCTGG------CTGGCT----GGCTGGCTG-------TCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................GCAGCAGCAGTAG---CGA---------------------------------------------------------------------CA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.171001000
..................................................................................................................................G---CA----------------GCAGCAGTAGC---GACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.171001000
.........................................................................................................................................................................................................................................................................AGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGAGCAG-------------------------------------------------------------------------------------------------------------------CAGC--A-------------------------------------------------------------------------------------------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................19200.051100000
.....................................................................................................................................................................................................................................................................CAGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGAGCAG-------------------------------------------------------------------------------------------------------------------CA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
droGri2
CGTTGTGTTGTTATTTGATTGTTGCCAGAGCAG-------------------------------------------------------------------T--------------------------------------------------------AGC---AGCAGCAGC------AGCAACG---GCAGCAGCAGC---------------------------------AGCAGCAGTAGCAGCA---GCAGC------------------------AGCAGCAAC------------------------------------ATGAAG------------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGGAAA---------------------------------------------------------------------------AGGAAAACG----------------------------------------------------------------------TCGTCCAAATGG----------G------GAAATGAGAAAAA--------------------------------------CTGCACACATTGGCT---------------------------------------------------------------------GGTTGTTTGTCACGCTGCTCTGTCACA-------------------------------------------------------------------------TGACTGACTG----ACTGACTGACTGACTGA----------------------------CTGA------TTAAC--------------------TGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................AGC---AGCAGCAGC------AGCAACG---GC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05110
droWil2
AGC-------------------------AACATC------------------------------------------------------------------------------------------------------------------------AGAAGCAAC---AACAGCAA------CAG---------------------------------------------------------------CA---GC---------------------------AGCAACAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT------------------------------------ATC----AAAC---------------------------------CAACAAGCAACAGAAAAAAGG---------------------------------------------------------------------------------------------------------------------------------------------------------AAGCAATTTCA-----------------------------------------------------------------------------------------------------------------------GGCT--AAAT-----------------------------------------------TTAGTTTAAATGCCTACCCGTTCATTCCAGCCATTGGCCGTTTGCCGG------------------AGAGA------------CTGACTGACTGACTGAC--------TGACTCGCTGGATGA----CTCG------TTGAC--------TGACG-----ACTTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................AGCAAC---AACAGCAA------CAG---------------------------------------------------------------CA---GC---------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10202000
................................................................................................................................................................AAC---AACAGCAA------CAG---------------------------------------------------------------CA---GC---------------------------AGCAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
...............................................................................................................................................................CAAC---AACAGCAA------CAG---------------------------------------------------------------CA---GC---------------------------AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
...........................................................................................................................................................................CAA------CAG---------------------------------------------------------------CA---GC---------------------------AGCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05101000
.............................................................................................................................................................AGCAAC---AACAGCAA------CAG---------------------------------------------------------------CA---GC---------------------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
..............................................................................................................................................................GCAAC---AACAGCAA------CAG---------------------------------------------------------------CA---GC---------------------------AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100
..............................................................................................................................................................GCAAC---AACAGCAA------CAG---------------------------------------------------------------CA---GC---------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
.......................................................................................................................................................................ACAGCAA------CAG---------------------------------------------------------------CA---GC---------------------------AGCAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
........................................................................................................................................................................CAGCAA------CAG---------------------------------------------------------------CA---GC---------------------------AGCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
dp5
CAGC------------------------AGCAGCA----GCAGCA--------G----------------------C-----A-------------------GAC--AGCGGCCGC---CA---------C---TA----------------GCTCCAACAAC---AACAGCAACAGCAACAA---CAA---------------------------------------------------------------------CAACAGCAATCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC---------------------------------AGACAAGCAAC---------------------------------------------------------------------------------------------------------------------------------------------------------GGGAA--------------CA---------ACAACGAGACAAC-------------------------------------------------GGTT-CCTGCACCTTTGGGCAGCAGCGGCC------------------------ATGCTAGTGCTGC-----------------------------------------------------------------------------------------------------------CA----ATG-------------------------------------------------------------------------------------GCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................CAGCA----GCAGCA--------G----------------------C-----A-------------------GAC--AG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19120.0810100000000
..GC------------------------AGCAGCA----GCAGCA--------G----------------------C-----A-------------------GAC--...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
droPer2
CCAA------------------------AACCAGA----TGAAGA--------T------------------------------------------------GAA--GACGACAAA---AA---------G---GA----------------GCCACAACAGC---GGCAGCAGCAGCAGCAG---CAA---------------------------------------------------------------------CAGCAGCAACAAGCTACC-------TGCAACATG--------------T----------------------TG------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGCA-----------------------------------------------------------------------------------------------------------------------GGTA--AAAA-----------------------------------------------T-------GTTG------------------CCTTTTGTTATTTGCCGACATCCAACCACAACTGGCTCTGG----CTGGCTGGCTGGCTGGCTGT--------------------------------CTGG------CT----------------GG------CTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CCAT------------------------AACGGAGAACAATC-CA--------C----------------------G-----A--CCCACA--CACACAAAGGTC--ATCTTCAAT---CC---------G---TA----------------TCCCTACCAGC---AACAGCAACAGCATCAGCA---TCAGCA------------------------------------------------------------------CCAGCAACATGTCCAGGAACAGGAGCAAC------------------------------------ATGTCG------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTGGAGGAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------AASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CAAC------------------------AACAGCA----ACAACT--------T----------------------G-----T--GGG-----AGCGCAGCA---GCAACAGCA----------------------ACAGATCCTG-------------------------------------------------------------ATTCAGCAGCAACAA---CCACA---------------GCA---GCAGCAACAGCA---------------------------GATATTGCAGCAAAAGTTGCCC-------------------------------------------------------------------------------------------ATCGATCCGCAACAGCAGCAAC---------------------AACA------------AC---------------------------------------------------------------------------------------------------------A-----------------------------------------GCAGCAGCAGCAAA-----------------------TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCAAC------------------------AGGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--TAASizeHit CountTotal NormTotal
No Reads
droKik1
CAGG------------------------CAG-ACA----GCCAGACTGGCGACGGTGGCATATTCCCGTGGGGAGCTGCATTTAA-------------------------------AAGGCATTTAAGCCACAAAA----------------TCTCAAGCAGC---AACAGCAA------------CAA---CA---------GC--------CAGCAACAA------------------------------------TTACAGCAAG-------------------------------------------------TAGGGGAGATTAATTCAAGCTGATCGG---AAAAGCTGGAATACTCTAAAAAAGATTTTTAAAAGATTTCTGTAAAATTTAAACTCTTTAATTCACAAAAAAAAAACTATAA---------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGAAGAAATTASizeHit CountTotal NormTotal
No Reads
droFic1
AGAA------------------------A----------------------------------------------------------------------------------------------------------------------------CTACGGGAACAGCGGCAGC------AGCGACAACAG---------------------------------------------------------------------CTGCAAAAATGAGCTGAC-------GGAAGCGAG--------------C---------------GATACGATG------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCCACGAGAAG------TGAATG---------------------TCTTCTGGGGGA----------------------TTGACTGACTG----GCTGACTAACTGACTGAC--------TGACT--------AA----CTGAGTAA--CTGAGT----AACTGACTGACTGAATTASizeHit CountTotal NormTotal
No Reads
droEle1
CAAC------------------------AACAAGA----GTTACA--------T----------------------T-----TAA-------------------------------AAAAAAAGAAAAACACA--------------------------------------------------------------------------------------------------------------------------------------------------CACTCACAT--------------------------------------------------------------------------------------------------------------------TCA---CCGAAAAAAA------ACAACAACAATAAT----------CACGCGCGGCAA--CGCGGCACGCAGCACCTGCTTTAAAAAGAAGTGCGAGTGGGGGGAGCGAGGTTAAAAAAGTATTGAAAACTGGAGAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT------------------------------CC------------------------AG-----------------------------------------------------------------------------------------TTGTCTGATTGATAC------------------GATGA----CTGACTGACTAACTGACTGACTGAT--------TGACT--------AA----CTCA------CTGACT----GTCTAACTGACTGACTGASizeHit CountTotal NormTotal
No Reads
droRho1
CAAC------------------------ATCAGCA----ACAGCA--------G----------------------C-----A---------------------------------------------------------------------------------------TC------AGCAACA---GCAGCATCAGC---------------------------------AACAGCA------------GA-----------------ATC----AACAGCAACAACAGG------------------------------------TTA------------TGCA--------------------------------------------------------ATTG---TACAATAATA------ACAACAACAACAACAGTAACAA-------------------------------------------------------------------------AA---------------------------------AGAA---------------------------------GCG-----------------------------------------------------------------------------------------------------------------------------------------------CAAGCGTAACAACA-----------------------------------------------------------------------------------------------------------A-----AAACAAAAGCTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GASizeHit CountTotal NormTotal
No Reads
droBia1
CGTT------------------------GACAGTG----AACACG--------G----------------------A-----G--GGGAC-CAGGAGCAGCA---G-----------------------------------------------------------------------------------CAGCAGCAGCAACACCCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCAACAGCA------GCAGCAACAGCAAC----------TGC--------------------CAC-----------------------------------------------------------------------------------------------------------------------------CTCCTG--CCTTGAAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------ATGACAAACTG----ACTGACTGACTGACTGAC--------TGACT--------GA----CTGA------GTGACTGATGGCCCGACTGTCTG--CAASizeHit CountTotal NormTotal
No Reads
droTak1
CAAT------------------------GGCGTCT-----CCGCA--------G----------------------C-----A-------------------GAC--AACTTTT----------------------ACGGA---------------CAGCAGC---AGCAGCAACAGCAGCAG---------------------------------------------------------------CA---GA-----------------GCTACC-------AGCAACATG--------------T---------------AAGTAGAAC------------A-------------------------------------------------------------------------------TTAAAA---------------------------------A---------------------------------------------------------------------------------------------------------CAAGAAAGG---------AAGCT--------ACC---------------------------------------------TTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCSizeHit CountTotal NormTotal
No Reads
droEug1
TGAT------------------------AACAACA----ATCAGC-------------------------------TACAGCTAC-------------------------------CAGCCAAGTGGACCATA-------------------------------------------------------------------------------------------------------AAA------------AA-----------------GTA----ACCAGCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGGCAGAGAGGC----TCTTAAAAAGCAGCAGTAGCAGCGGGCAAAAGCTGCGAAACGGGCGGAAAAGAAAAGGAAAATTTCAAATGAAGCGCA---------------------------------TTGCATTTA---------------------------------------------TCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTCTC------------------------GAGCTCTCAACGA--------------------------------------------------------------------------------------------------------GA----------------------------------------------------------------------------------------------TG------CTSizeHit CountTotal NormTotal
No Reads
dm3
CAAC------------------------ACTAGCA----ATCACA--------A----------------------G-----A----------------------ACAACAGCA-A---AC---------G---CTGC-------------AGT---CGC---AGCAGCAGC------AGC------------------AGCAG------------------CAGCTGCA---------------GTAGCAGC---------------------------AGCAGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------AG-------------------------------------------------------------------------------------------------------------------CAGC--A---------------------AC---------GCTAG--CGTCGGCAGCAGCAT--------------------------------------------------------------------------------GTCCAAAACAAGTAGCGGTAATCCAGCA--------------------------------------------------------------------------------------------------GCAGC------------------------AGGTG--CAACAAATGCCGC-----------------------------------------------------------------------------------------------------------GA-------------------------------------------------------------------------------------------ATGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................C-------------------------------------------------------------------------------------------------------------------------------------------------------------AG-------------------------------------------------------------------------------------------------------------------CAGC--A---------------------AC---------GCTAG--CGTCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................T---CGC---AGCAGCAGC------AGC------------------AG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................C---AGCAGCAGC------AGC------------------AGCAG------------------CAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................AGCAGCAGC------AGC------------------AGCAG------------------CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................AGT---CGC---AGCAGCAGC------AGC------------------AG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................CA---------------GTAGCAGC---------------------------AGCAGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------AG-------------------------------------------------------------------------------------------------------------------CAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................C-------------AGT---CGC---AGCAGCAGC------AGC------------------A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................A---------------GTAGCAGC---------------------------AGCAGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------AG-------------------------------------------------------------------------------------------------------------------CAGC--A---------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................GTAGCAGC---------------------------AGCAGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------AG-------------------------------------------------------------------------------------------------------------------CA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................CGC---AGCAGCAGC------AGC------------------AGCAG------------------CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TAGCAGC---------------------------AGCAGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------AG-------------------------------------------------------------------------------------------------------------------CA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
droSim2
CAAT------------------------CACAATC----ATCACA--------T----------------------G-----C--------CAAGAGCGGTA---GCATCAGCG----------------------GCAGAATTTCAAA-------------------------------------------------------------------------------------------------------------------------GCC----ATCGGCCACAT--------------------------------------------------------------------------------------------------------------------CCG---CCCAACAGCA------ACAACAGCAGCAAC----------AGC--------------------AAC------------------------------------AGC----AAAT---------------------------------GCGTAAGAAAGACAAAGATAGATCGAATAGTAGTT--------GC---------ATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTGGTAGTCATGTTGGTGCTGGTAGCGGTAGTCAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAG--TGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................CA------ACAACAGCAGCAAC----------AGC--------------------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20202.7054000054000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------ACAACAGCAGCAAC----------AGC--------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000000000100000
droSec2
ATGT------------------------TGCTGCG----GTGGCT--------G----------------------G-----T--GG-------------------CACTTGTT----------------------GCGGCTTGCTGCGGTTGC------------CGCTA------------------------------CTG------------------CTACTGCAACTGCAACTGCAGCGGCA---GCGGC------------------------AGCAGCAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC---------------------------------------T--------------------------------------------------------------------------------------GCGTG--TCAATTAGC-G---TTGATGATGCACAGTGAAATAGATTTCGCGC--A-GCTTGTTTCAATTCCAATTCGTTCGACAATTGTTACAGCTAAAGATCTACAAAACAT-CAGCGCCTATCAAGTGGAAGTGTCA-----------------------------------------------------------------------------------------------------------------------AGTG--T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACAAAACAAAAACGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
ATGT------------------------TGCTGCG----GTGGCT--------G----------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..........................................................................................................................................................................................................TG------------------CTACTGCAACTGCAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3311000
droYak3
CACT------------------------CTCCGCC----GCCCCC--------T----------------------C-----G--G--------------GA---ACAACAGCA----------------------ACATGTTGTTAGGTCAGC------------CGCAG------------------CAGCAGCAGCAACAA---------------------------------CAAGAGCAACTGCAAC---------------------------AGCAGCAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------ACGA------------AC---------------------------------------------------------------------------------------------------------A---------------------TC---------TCTAGGCCATTGGCAGTG---TG-----------------------GC--ATGCAA----------------------------------------------ATGGGAGCTGTGCAGCGTAGTTCCAACGGC-------------------------------------------------TTGGAGCAGGGAGCTGGAT-------------TCAGTCTATCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAATAATTCTGCTT----GTTGGAGAAACTG--TAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................CAG------------------CAGCAGCAGCAACAA---------------------------------CA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000010000
droEre2
GCAG------------------------T--------------------------------------------------------------------------------------------------------------------------------CGC---AGCAGCAGC------AGC------------------AGCAG------------------CAGCTGCAGTAGCAGCAGCAGCAGCA---GCAGC------------------------AGCAGCAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAG--CGTCGGCAGCAGCAT--------------------------------------------------------------------------------GTCCAAAACAAGCAGCGGTAATCCAGCAGCAGCAGCA-----------------------------------------------------------------------------------------------------------------------GGTG--CAACAAATGCCGCGAATGCCGC---------------TGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAACAAGCAGCGGTAATCCAGC...............................................................................................................................................................................................................................................................................................................................................................2511.0010100000
....................................................................................................................................................................................................................................................AGCA---GCAGC------------------------AGCAGCAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20100.1011000000
..AG------------------------T--------------------------------------------------------------------------------------------------------------------------------CGC---AGCAGCAGC------AGC------------------AGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.0610000100
..........................................................................................................................................................................................................................................CAGCAGCAGCAGCA---GCAGC------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010
..............................................................................................................................................................GC---AGCAGCAGC------AGC------------------AGCAG------------------CAGCTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510100000
.............................................................................................................................................................CGC---AGCAGCAGC------AGC------------------AGCAG------------------CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000010
................................................................................................................................................................................................................................................CAGCAGCA---GCAGC------------------------AGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000000

Generated: 05/16/2015 at 11:26 PM