dvi_8347

Name	Class	Family	Strand
(CAA)n	Simple_repeat	Simple_repeat	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AACAGTCCGGGCCTCAAGCTGAACACGCGCAATGCGCTCGCCTTCTTGGAGTCCGGCAGCAGCTCGCCGCTGGCCCTGAACCTCAACCTGAACAACAATCACAACAAACATAACAACAACAACCACAACAACAACATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN *****************************************************************...................................................................*******************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	M027 male body	M061 embryo	SRR060664 9_males_carcasses_total	V116 male body	M028 head	SRR060665 9_females_carcasses_total	SRR060668 160x9_males_carcasses_total	SRR060671 9x160_males_carcasses_total	SRR060672 9x160_females_carcasses_total	SRR060685 9xArg_0-2h_embryos_total
...............................ATGCGCTCGCCTTCTTGGA.........................................................................................................................................................................................................	19	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
...................................................................CGCTGGCCCTGAACCTCAACCTGAA...............................................................................................................................................................	25	0	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0
....................................................................................AACCTGAACAACAATCACAACAACAAT............................................................................................................................................	27	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....GTCCGGGCCTCAAGCTGAACACGCGC.............................................................................................................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................CCTGAACAACAATCACAACAAC...............................................................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..............................AATGCGCTCGCCTTCTTGGA.........................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
AACAGTCCGGGCCTCAAGCTGAACAC.................................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.................................GCGCTCGCCTTCTTGGAGTCC.....................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.........................................................AGCAGCTCGCCGCTGGCCCTGAACCT........................................................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................CGCCGCGGGCCCTGAACCTCAACCTGA................................................................................................................................................................	27	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................TCGCCTTCTTGGAGTCCGGCAGCAGCT...........................................................................................................................................................................................	27	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
AACAGTCCGGGCCTCAAGCTGAA....................................................................................................................................................................................................................................	23	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
............................................CTTGGAGTCCGGCAGCAGCTCGCCGCTG...................................................................................................................................................................................	28	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................GCTCGCCGCTGGCCCTGAACCT........................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................ATGCGCTCGCCTTCTTGGAGTCC.....................................................................................................................................................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.ACAGTCCGGGCCTCAAGCTG......................................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...........................CGCAATGCGCTCGCCTTCTTGGAGTCC.....................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................................................AGCTCGCCGCTGGCCCTGAACCTCAACCT..................................................................................................................................................................	29	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0
..................CTGAACACGCGCAATGCGCTCGCCTT...............................................................................................................................................................................................................	26	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.ACAGTCCGGGCCTCAAGCT.......................................................................................................................................................................................................................................	19	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0
.......................................................................GGACCTGAACCTCAACCTGAACAACA..........................................................................................................................................................	26	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................CAATGCGCTCGCCTTCTTGGAGTC......................................................................................................................................................................................................	24	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................CTCGCCTTCTTGGAGTCCGGC..................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
................................................................CGCCGCTGGCCCTGAACCTCAACCTGA................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.ACAGTCCGGGCCTCAAGCTGAACAC.................................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................GCAATGCGCTCGCCTTCTTGGA.........................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................GAACACGCGAAATTCACTCG...................................................................................................................................................................................................................	20	3	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1
...............................................................................................................AACAACAACAACCACAACAACAA.....................................................................................................................	23	0	20	0.15	3	3	0	0	0	0	0	0	0	0	0	0
...................................................................................................................ACAACAACCACAACAACAAC....................................................................................................................	20	0	20	0.10	2	1	0	1	0	0	0	0	0	0	0	0

TTGTCAGGCCCGGAGTTCGACTTGTGCGCGTTACGCGAGCGGAAGAACCTCAGGCCGTCGTCGAGCGGCGACCGGGACTTGGAGTTGGACTTGTTGTTAGTGTTGTTTGTATTGTTGTTGTTGGTGTTGTTGTTGTAGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN *******************************************************************************************************************...................................................................*****************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR1106725 embryo_14-16h	GSM1528803 follicle cells	V116 male body	SRR060663 160_0-2h_embryos_total	V053 head	M061 embryo	V047 embryo
.................................................TCAGGCCGTCGTCGAGCGGCGA....................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0
...............................................................................TGGAGTTGGACTAGTT............................................................................................................................................................	16	1	16	0.25	4	0	4	0	0	0	0	0
.........................................GAAGAACCTCAGGCGGTA................................................................................................................................................................................................	18	2	5	0.20	1	0	0	1	0	0	0	0
..................................................................................................AGGGTTGTTTGTCTTGTTG......................................................................................................................................	19	2	6	0.17	1	0	0	0	1	0	0	0
.........................................................TCGGCGAGCGGCGGCCGGAAC.............................................................................................................................................................................	21	3	8	0.13	1	0	0	0	0	1	0	0
...............................................................................................................TTGTTGTTGTTGGTGTTGT.........................................................................................................................	19	0	20	0.05	1	0	0	0	0	0	1	0
....................................................................................CTGGACTGGCTGTTAGTGT....................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12928:945126-945376 +	dvi_8347	AAC--A-------------------------------------------------------G------TCCG------------------------------------GGCCTCAAGCTGAACACGCGCAATGCGCTCGCCTTCTTGGAGTCCGGCAGCA-------------------GCTCGCCGCTGGCCCTGAACCTCAACCT---------------GAACAACAATCACAACAAA---CATAACAACAACAACCACAACAACAACATCATT--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------
droGri2	scaffold_14853:7589676-7589769 -		AAT--A-------------------------------------------------------G------TCCC------------------------------------ACTCTAAAGTTAAACTCTCGCAACGCACTGGCCTTTTTGGAAACGGGCAACA-------------------CCTCGCCTCAAGCTA---------------------------------------------------------------ACAACATCAAC-------------------------------------------------------------------------------------------------------------------------------------AACAATA
droWil2	scf2_1100000004590:4205511-4205681 +		AAC--A-------------------------------------------------------A------TACTAGCACTACGATCGCCAGCAATGGCACATCGACGACAACTTTGAAATTGAATTCGCGCACTGCTTTGGCCTTTCTGGAGAATGGAGGCA------------------------------------------------------ACACC-CAAACCATCGGCAGCAACAAC---ATCAATGTGAACAACAAC------AATATCACAATCAGTTCACCAAC--------------------------------------------------------------------------------------------------------------AGCAATC
dp5	XL_group1a:3152524-3152604 +		AGC--A-------------------------------------------------CTC---A------GACG------------------------------------ACCCTCAAGCTGAACGCCCAGAACGCGCTGGCCTTCCTGGAGACGGGCGGCA------------ACA----AC----------------------------------------------------------------------------------TCGCC-------------------------------------------------------------------------------------------------------------------------------------GACGGTC
droAna3	scaffold_12929:2588122-2588235 -		AAG--GT-------------------------CAGTCCCATCAAC---CAGAA--CTC----------CTCC------------------------------------GGCCTCAAGCTGAACACTCGCACGGCGCTGGCCTTCCTGGAGAACGGCAACC-------------------AGACGCCGGGCGCCA----------------------------------------------------------------TGCCGACCGT-------------------------------------------------------------------------------------------------------------------------------------CACCCTG
droBip1	scf7180000395714:102013-102091 -		AAG--GT-------------------------CAGTCCCATCAACTCCCAGAA---------------CTCG------------------------------------GGCCTCAAGCTGAACACTCGCACGGCGCTGGCCTTCTTGGAGAACGGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302696:29457-29513 +		AAC--A----------------------------------------------------------------AC------------------------------------ACCCTCAAGCTGAACACACGCACGGCGCTGGCCTTCCTGGAGAATGGCAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453882:144257-144316 +		CAG--A-------------------------------------------------------G------CAAC------------------------------------ACCCTCAAGCTGAACACCCGCACTGCAATGGCCTTCTTGGAGTCCGGCAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000490546:436621-436713 +		AAC--G-------------------------------------------------GACAGAG------CAAC------------------------------------ACCCTCAAGCTGAACACTCGGACGGCAATGGCCTTCCTGGAGTCGGGCGGTG-------------------GGTC-------------------------------------------GAGCGCCTCCCCG---------------------------GT-------------------------------------------------------------------------------------------------------------------------------------GACCTTG
droRho1	scf7180000777390:14654-14713 +		AAC--A-------------------------------------------------------A------CAAC------------------------------------ACCCTCAAGCTGAACACACGCACCGCAATGGCCTTTCTGGAATCCGGCGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302075:1204913-1205020 +		AAT--G-------------------G------TATTGGTGGTGGTGCACAGAATGGACAGAACAACAACAAC------------------------------------ACCCTCAAGCTGAACACCCGCACCGCCATGGCCTTCTTGGAGTCGGCTAGCT-------------------CGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGGCC
droTak1	scf7180000415659:130405-130502 -		CTT--G---------GCGGCCAACGGAAATGGTATTGGAAATGGTCTTACA------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGGC-CAGAACAACAACCAGAACAAC---CAGAACAATAACAACAACAACAACACCCTC-------------------------------------------------------------------------------------------------------------------------------------A
droEug1	scf7180000409110:787948-788013 +		AAT--A-------------------------------------------------------G------CACC------------------------------------ACCCTCAAGTTGAATACCCGCACGGCAATGGCATTCCTGGAATCGGGCGGTT-----------------------------------------------------------------CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCT
dm3	chrX:12409189-12409291 +		ACGTTGTCCCTGGGCGCCGCCAATGG-----------------------------------------------------------------------------------------------------------TAATGGCGGCCTA-------------------------------------------------------------AATGTCAATGGC-CAGATCAACAATATCAGCAGC---AGCAACAATAACAACAACAACAACAACAA-------------------------------------------------------------------------------------------------------------------------------------CA
droSim2	x:11766606-11766700 +		AAC--A-------------------------------------------------------A------CAAC------------------------------------ACCCTCAAGCTGAACACGCGCACAGCCATGGCTTTCCTGGAATCCGGAGGTTCCACGGGCGGCATCAACTC----------------------------GTCATCGGTGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCT-
droSec2	scaffold_21:165431-165531 +		CAT--ATCCCTGGGCGCCGCCAATGG-----------------------------------------------------------------------------------------------------------TAATGGCGGCCTA-------------------------------------------------------------AATGTCAATGGCCCAGATCAACAATATCAGCAGC---AGCAACAATAACAACAACAACAACAACACC--------------------------------------------------------------------------------------------------------------------------------------
droYak3	X:6684805-6684864 +		AAC--A-------------------------------------------------------A------CAAC------------------------------------ACCCTCAAGCTGAACACCCGCACAGCAATGGCATTCCTGGAGTCTGGCGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4690:14449705-14449809 -		CCC-TGTCCCTGGGCGCTGCCAATGG-----------------------------------------------------------------------------------------------------------CAATGGCGCCATA-------------------------------------------------------------AATGTCAATGGC-CAGCTCAATAACATCAGCAGCAACAATAACAGCAACATCAACATCAACAACACC-------------------------------------------------------------------------------------------------------------------------------------A

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

AAC--A-------------------------------------------------------G------TCCG------------------------------------GGCCTCAAGCTGAACACGCGCAATGCGCTCGCCTTCTTGGAGTCCGGCAGCA-------------------GCTCGCCGCTGGCCCTGAACCTCAACCT---------------GAACAACAATCACAACAAA---CATAACAACAACAACCACAACAACAACATCATT--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................................................................................................................................ATGCGCTCGCCTTCTTGGA...................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................CGCTGGCCCTGAACCTCAACCT---------------GAA.......................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................G------TCCG------------------------------------GGCCTCAAGCTGAACACGCGC.......................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................CCT---------------GAACAACAATCACAACAAC---....................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AATGCGCTCGCCTTCTTGGA...................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AAC--A-------------------------------------------------------G------TCCG------------------------------------GGCCTCAAGCTGAACAC...........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GCGCTCGCCTTCTTGGAGTCC...............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................AGCA-------------------GCTCGCCGCTGGCCCTGAACCT...............................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TCGCCTTCTTGGAGTCCGGCAGCA-------------------GCT..................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
AAC--A-------------------------------------------------------G------TCCG------------------------------------GGCCTCAAGCTGAA..............................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................CTTGGAGTCCGGCAGCA-------------------GCTCGCCGCTG..........................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................GCTCGCCGCTGGCCCTGAACCT...............................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................ATGCGCTCGCCTTCTTGGAGTCC...............................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AC--A-------------------------------------------------------G------TCCG------------------------------------GGCCTCAAGCTG................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................CGCAATGCGCTCGCCTTCTTGGAGTCC...............................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................A-------------------GCTCGCCGCTGGCCCTGAACCTCAACCT---------------..........................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................CTGAACACGCGCAATGCGCTCGCCTT.........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AC--A-------------------------------------------------------G------TCCG------------------------------------GGCCTCAAGCT.................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................CAATGCGCTCGCCTTCTTGGAGTC................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................CTCGCCTTCTTGGAGTCCGGC............................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CGCCGCTGGCCCTGAACCTCAACCT---------------GA........................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AC--A-------------------------------------------------------G------TCCG------------------------------------GGCCTCAAGCTGAACAC...........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................GCAATGCGCTCGCCTTCTTGGA...................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AACAACAACAACCACAACAACAA..........................................................................................................................................	23	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................ACAACAACCACAACAACAAC.........................................................................................................................................	20	20	0.10	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

AAT--A-------------------------------------------------------G------TCCC------------------------------------ACTCTAAAGTTAAACTCTCGCAACGCACTGGCCTTTTTGGAAACGGGCAACA-------------------CCTCGCCTCAAGCTA---------------------------------------------------------------ACAACATCAAC-------------------------------------------------------------------------------------------------------------------------------------AACAATA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
......................................................................................................................TAAACTCTCGCAACGCACTGGCCT..........................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0

droWil2

AAC--A-------------------------------------------------------A------TACTAGCACTACGATCGCCAGCAATGGCACATCGACGACAACTTTGAAATTGAATTCGCGCACTGCTTTGGCCTTTCTGGAGAATGGAGGCA------------------------------------------------------ACACC-CAAACCATCGGCAGCAACAAC---ATCAATGTGAACAACAAC------AATATCACAATCAGTTCACCAAC--------------------------------------------------------------------------------------------------------------AGCAATC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................GGCCTTTCTGGAGAATGGA............................................................................................................................................................................................................................................................	19	1	5.00	5	0	0	2	3	0
...............................................................................................CACATCGACGACAACTTTGA.....................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0
...............................................................................................................................................................A------------------------------------------------------ACACC-CAAACCATCGGCAGCAAC..........................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
...........................................................................................................AACTTTGAAATTGAATTCGCGC.......................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
................................................................................................ACATCGACGACAACTTTGAAATTGAATT............................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0
................................................................................................ACATCGACGACAACTTTGA.....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...................................................................................................................AATTGAATTCGCGCACTGCTTT...............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.................................................................................................................................ACTGCTTTGGCCTTTCTGGAG..................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
....................................................................................................CGACGACAACTTTGAAAT..................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
.............................................................................................................................................TTTCTGGAGAATGGAGGCA------------------------------------------------------ACACC-C...........................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
...............................................................................................CACATCGACGACAACTTTGAAAT..................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
..........................................................................................AATGGCACATCGACGACAACTTTGA.....................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................GCA------------------------------------------------------ACACC-CAAACCATCGGC................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................CAACAAC------AATATCACAATCAGT.............................................................................................................................	22	1	1.00	1	0	1	0	0	0
......................................................................................CAGCAATGGCACATCGACGA..............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.............................................................................................GGCACATCGACGACAACTTTG......................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................GGCAGCAACAAC---ATCAATGTGA..........................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
............................................................................CTACGATCGCCAGCAATG..........................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
............................................................................................................................................CTTTCTGGAGAATGGAGGC.........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.........................................................................................................................................GGCCTTTCTGGAGAATGGAGG..........................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
....................................................................................GCCAGCAATGGCACATCGACGACAACTT........................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
...................................................................................CGCCAGCAATGGCACATCGACGA..............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
........................................................................AGCACTACGATCGCCAGCAATGGCACAT....................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
......................................................................CTAGCACTACGATCGCCAGCAAT...........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
....................................................................................................................................GCTTTGGCCTTTCTGGAGAATGGA............................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................GCA------------------------------------------------------ACACC-CAAACCATCGGCAGC.............................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.........................................................................GCACTACGATCGCCAGCAAT...........................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................AACCATCGGCAGCAACAAC---ATCAATGT............................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
...........................................................................................................................................CCTTTCTGGAGAATGGAGGC.........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................AAACCATCGGCAGCAACAAC---ATCAATGT............................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
.............................................................................................GGCACATCGACGACAACTTTGA.....................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................AGGCA------------------------------------------------------ACACC-CAAACCATCGGCAGC.............................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................A------------------------------------------------------ACACC-CAAACCATCGGCAG..............................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
.....................................................................................................................................CTTTGGCCTTTCTGGAGAATGG.............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................CC-CAAACCATCGGCAGCAACAAC---AT..................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
...................................................................................................................AATTGAATTCGCGCACTG...................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
............................................................................................................................................................GGCA------------------------------------------------------ACACC-CAAACCATCGGC................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
....................................................................................................................................GCTTTGGCCTTTCTGGAGAATGGAGG..........................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................CAACAAC------AATATCACAATCAGTT............................................................................................................................	23	1	1.00	1	0	1	0	0	0

dp5

AGC--A-------------------------------------------------CTC---A------GACG------------------------------------ACCCTCAAGCTGAACGCCCAGAACGCGCTGGCCTTCCTGGAGACGGGCGGCA------------ACA----AC----------------------------------------------------------------------------------TCGCC-------------------------------------------------------------------------------------------------------------------------------------GACGGTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................GCA------------ACA----AC----------------------------------------------------------------------------------TCGCC-------------------------------------------------------------------------------------------------------------------------------------GACGGT.	19	1	4.00	4	0	4	0	0	0	0	0	0	0	0
AGC--A-------------------------------------------------CTC---A------GACG------------------------------------ACCCTCAAGCT.................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................CA------------ACA----AC----------------------------------------------------------------------------------TCGCC-------------------------------------------------------------------------------------------------------------------------------------GACGGT.	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................................C---A------GACG------------------------------------ACCCTCAAGCTGAACGCC..........................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................CAAGCTGAACGCCCAGAA.....................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................GACG------------------------------------ACCCTCAAGCTGAAC.............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................CTTCCTGGAGACGGGCGGC.........................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................GGCCTTCCTGGAGACGGGC............................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................GGGCGGCA------------ACA----AC----------------------------------------------------------------------------------TCGCC-------------------------------------------------------------------------------------------------------------------------------------GACGGTC	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................CAAGCTGAACGCCCAGAACGCGCTGGC............................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................GGCCTTCCTGGAGACGGGCGG..........................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................GGCA------------ACA----AC----------------------------------------------------------------------------------TCGCC-------------------------------------------------------------------------------------------------------------------------------------GACGGT.	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................CG------------------------------------ACCCTCAAGCTGAACGCCC.........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droAna3

AAG--GT-------------------------CAGTCCCATCAAC---CAGAA--CTC----------CTCC------------------------------------GGCCTCAAGCTGAACACTCGCACGGCGCTGGCCTTCCTGGAGAACGGCAACC-------------------AGACGCCGGGCGCCA----------------------------------------------------------------TGCCGACCGT-------------------------------------------------------------------------------------------------------------------------------------CACCCTG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................CTCAAGCTGAACACTCGCACGGCGCT...............................................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
..........................................AAC---CAGAA--CTC----------CTCC------------------------------------GGCCT.......................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
...........................................AC---CAGAA--CTC----------CTCC------------------------------------GGCCTCAAGCT.................................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
.......................................................................C------------------------------------GGCCTCAAGCTGAACACTCGCA......................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..........................................AAC---CAGAA--CTC----------CTCC------------------------------------GGCCTCAAGC..................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................TGGCCTTCCTGGAGAACGGCAACC-------------------AGAC.................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................ACGGCAACC-------------------AGACGCCGGGCGC........................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...................................TCCCATCAAC---CAGAA--CTC----------CTCC------------------------------------............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
......................................CATCAAC---CAGAA--CTC----------CTCC------------------------------------GGCCTCAAG...................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................CGGCGCTGGCCTTCCTGGA...................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................GAACACTCGCACGGCGCTGGC............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
......................................CATCAAC---CAGAA--CTC----------CTCC------------------------------------GGCC........................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...............................................................................................................CTCAAGCTGAACACTCGCACGGCGC................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0
.....................................................................................................................................................GAACGGCAACC-------------------AGACGCCGGGCGC........................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.....GT-------------------------CAGTCCCATCAAC---CAGAA--CTC----------CTCC------------------------------------............................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.............................................................................................................GCCTCAAGCTGAACACTCGCACGGC..................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.......................................ATCAAC---CAGAA--CTC----------CTCC------------------------------------GGC.........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droBip1

AAG--GT-------------------------CAGTCCCATCAACTCCCAGAA---------------CTCG------------------------------------GGCCTCAAGCTGAACACTCGCACGGCGCTGGCCTTCTTGGAGAACGGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAC--A----------------------------------------------------------------AC------------------------------------ACCCTCAAGCTGAACACACGCACGGCGCTGGCCTTCCTGGAGAATGGCAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAG--A-------------------------------------------------------G------CAAC------------------------------------ACCCTCAAGCTGAACACCCGCACTGCAATGGCCTTCTTGGAGTCCGGCAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAC--G-------------------------------------------------GACAGAG------CAAC------------------------------------ACCCTCAAGCTGAACACTCGGACGGCAATGGCCTTCCTGGAGTCGGGCGGTG-------------------GGTC-------------------------------------------GAGCGCCTCCCCG---------------------------GT-------------------------------------------------------------------------------------------------------------------------------------GACCTTG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAC--A-------------------------------------------------------A------CAAC------------------------------------ACCCTCAAGCTGAACACACGCACCGCAATGGCCTTTCTGGAATCCGGCGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAT--G-------------------G------TATTGGTGGTGGTGCACAGAATGGACAGAACAACAACAAC------------------------------------ACCCTCAAGCTGAACACCCGCACCGCCATGGCCTTCTTGGAGTCGGCTAGCT-------------------CGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGGCC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTT--G---------GCGGCCAACGGAAATGGTATTGGAAATGGTCTTACA------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGGC-CAGAACAACAACCAGAACAAC---CAGAACAATAACAACAACAACAACACCCTC-------------------------------------------------------------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AAT--A-------------------------------------------------------G------CACC------------------------------------ACCCTCAAGTTGAATACCCGCACGGCAATGGCATTCCTGGAATCGGGCGGTT-----------------------------------------------------------------CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCT	Size	Hit Count	Total Norm	Total
No Reads

dm3

ACGTTGTCCCTGGGCGCCGCCAATGG-----------------------------------------------------------------------------------------------------------TAATGGCGGCCTA-------------------------------------------------------------AATGTCAATGGC-CAGATCAACAATATCAGCAGC---AGCAACAATAACAACAACAACAACAACAA-------------------------------------------------------------------------------------------------------------------------------------CA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................ATGG-----------------------------------------------------------------------------------------------------------TAATGGCGGCCTA-------------------------------------------------------------AATGTC...................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CGTTGTCCCTGGGCGCCGC....................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.......................TGG-----------------------------------------------------------------------------------------------------------TAATGGCGGCCTA-------------------------------------------------------------AA.......................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................CAATATCAGCAGC---AGCAACA.............................................................................................................................................................	20	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACGTTGTCCCTGGGCGCCGCCAACC...............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TGGGCGCCGCCAATGG-----------------------------------------------------------------------------------------------------------TAATGGC............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
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............................................................................................................................................................................................................................................................TAACAACAACAACAACAA..........................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................AGC---AGCAACAATAACAAC.....................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AACAATAACAACAACAACAAC............................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................CAATAACAACAACAACAACAAC.........................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................ACAACAACAACAACAACAA-------------------------------------------------------------------------------------------------------------------------------------..	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................AATAACAACAACAACAACAAC.........................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................ACAATAACAACAACAACAACA...........................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AAC--A-------------------------------------------------------A------CAAC------------------------------------ACCCTCAAGCTGAACACGCGCACAGCCATGGCTTTCCTGGAATCCGGAGGTTCCACGGGCGGCATCAACTC----------------------------GTCATCGGTGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCT-	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................................ATCAACTC----------------------------GTCATCGGTGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C...	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................CACGCGCACAGCCATGGCTTTCCTGG....................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................CCTGGAATCCGGAGGTTCCACGGGCGGC.............................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................GAACACGCGCACAGCCATGGC............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................GGCATCAACTC----------------------------GTCATCGGTG...............................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................GGCATCAACTC----------------------------GTCATCGGT................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................GTTCCACGGGCGGCATCAACTC----------------------------GT.......................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CAT--ATCCCTGGGCGCCGCCAATGG-----------------------------------------------------------------------------------------------------------TAATGGCGGCCTA-------------------------------------------------------------AATGTCAATGGCCCAGATCAACAATATCAGCAGC---AGCAACAATAACAACAACAACAACAACACC--------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........CTGGGCGCCGCCAATGG-----------------------------------------------------------------------------------------------------------TAATGGC............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
........CCTGGGCGCCGCCAATGG-----------------------------------------------------------------------------------------------------------TA.................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
.AT--ATCCCTGGGCGCCGCCAATG...............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................................................TCAGCAGC---AGCAACAATAACA.......................................................................................................................................................	21	1	1.00	1	0	0	0	1
...................................................................................................................................................................................................................................ACAATATCAGCAGC---AGCAACA.............................................................................................................................................................	21	1	1.00	1	0	0	1	0

droYak3

AAC--A-------------------------------------------------------A------CAAC------------------------------------ACCCTCAAGCTGAACACCCGCACAGCAATGGCATTCCTGGAGTCTGGCGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................................CAAGCTGAACACCCGCACAGC..................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................AC------------------------------------ACCCTCAAGCTGAACACCCGC.......................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................GAACACCCGCACAGCAATG..............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................AACACCCGCACAGCAATGG.............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................AGCAATGGCATTCCTGGAGT.................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................AGCAATGGCATTCCTGGAGTCT...............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................TGAACACCCGCACAGCAATGGC............................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................AGCAATGGCATTCCTGGAGTCTGG.............................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................GGCATTCCTGGAGTCTGGC............................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..C--A-------------------------------------------------------A------CAAC------------------------------------ACCCTCAAGCTGAA..............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

CCC-TGTCCCTGGGCGCTGCCAATGG-----------------------------------------------------------------------------------------------------------CAATGGCGCCATA-------------------------------------------------------------AATGTCAATGGC-CAGCTCAATAACATCAGCAGCAACAATAACAGCAACATCAACATCAACAACACC-------------------------------------------------------------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....GTCCCTGGGCGCTGCCAATGG-----------------------------------------------------------------------------------------------------------CA.................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0	0
.................................................................................................................................................................................................................................CAATAACATCAGCAGCAACAATAACA.............................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................ATAACAGCAACATCAACATCAACAACACC-------------------------------------------------------------------------------------------------------------------------------------.	29	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................AGCAACAATAACAGCAACATCAACAT................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................TGTCAATGGC-CAGCTCAATAACATCAGCA.........................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
.....GTCCCTGGGCGCTGCCAATGG-----------------------------------------------------------------------------------------------------------C..................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................GCAACAATAACAGCAACATCAA...................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..C-TGTCCCTGGGCGCTGCCAATGG-----------------------------------------------------------------------------------------------------------C..................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................................................ATA-------------------------------------------------------------AATGTCAATGGC-CAGCTC......................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0

dvi_8347

scaffold_12928:945176-945326 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

0.4	0.9