ID:

dvi_8279

 Coordinate:

scaffold_12928:486803-486953 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.4 -16.4 -16.2

Flybase annnotation

CDS [Dvir\GJ16729-cds]; exon [dvir_GLEANR_17236:5]; intron [Dvir\GJ16729-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGGCGCCGTGCTTGAGCCAACCTGTGTGCGTCGACACTATTACAAGCTGGGTCCGGCCGCCGATGCGGATGCGGCTCAAAACGCGGCTCAAACCGAAGCGGCCAGCATTGCCAAGGCGGTGACAAGTACTGAAACCGTTGGTAAGGCCCAAAAGGCAACAACAGCAACAACAACATAAAATCTAAATCAAATAAAACACAAACCACAAATCGAGCAAGCAACTATTACTTCAACTTCTTCTACTTGCAACC
******************************************************************************************************..((.((((((..(((((..((.....))..))))))))))).))..............................************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V047
embryo
 M061
embryo
 SRR060668
160x9_males_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 M027
male body		 SRR060657
140_testes_total
 SRR060658
140_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR1106727
larvae
 V116
male body		 SRR060671
9x160_males_carcasses_total
 SRR060661
160x9_0-2h_embryos_total
 GSM1528803
follicle cells
....GCCGTGCTTGAGCCAACCTGTGTGC.............................................................................................................................................................................................................................. 25 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....CCGTGCTTGAGCCAACCTGTGTGC.............................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TGCGTCGACACTATTACAAG............................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................AACAGAAACCACAAATCGAGCA................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................CTATTACAAGCTGGGTCC..................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CAACTATTACTTCAACTTCTT............ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................ACCTGTGTGCGTCGACACTATTACA............................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................CAGCATTGCCAAGGCGGTGA................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GGTGACAAGTACTGAAACCGTTG............................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.GGCGCCGTGCTTGAGCCAACCTGTGT................................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AGCCAACCTGTGTGCGTCGAC........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CAAAAGGCAACAACAGCAACAACAACATA.......................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TGTGCGTCGACACTATTAC................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GCAACAACAACATAAAATCTAAAT................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AACACAAACCACAAATCGAGCAAGC................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............GAGCCAACCTGTGTGCGTCGA......................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................AACCTGTGTGCGTCGACACTA.................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................GTAAGGCCCACAAGGCAACA........................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............GAGCCAACCTGTGTGCGTCGACACT..................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ATCGAGCAAGCAACTATTACT...................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CAAACCACAAATCGAGCAAGCAACTA........................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................CAAAACGCGGCTCAAACCGAA.......................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GCGTCGACACTATTACAAGCTGGGTCC..................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GTTGGTAAGGCCCAAAAG................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AAACCGTTGGTAAGGCCCAAAAG................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................TACAAGCTGGGTCCGGCCGC............................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................CTCAAACCGAAGCGGCCAGCATTGCC........................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................ACTATTACAAGCTGGGTCCGG................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GCAACTATTACTTCAACTTCTTCTACT....... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CGAGCAAGCAACTATTACTTCAACT................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GAAACCGTTGGTAAGGCCCAA.................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................CACTATTACAAGCTGGGTCC..................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GCCAACCTGTGTGCGTCGACA....................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................CAAAACGCGGCTCAAACCGAAGCGGC..................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CGTTGGTAAGGCCCAAAAGG................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AACTATTACTTCAACTTCTTCTACTTG..... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TGCCAAGGCGGTGACAAG............................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CAACTTCTTCTACTTGCAACC 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTCCAACCGGTGGTAAGGCC....................................................................................................... 20 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................AACCGGTGGTAAGGCCAAA.................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................AACAACAGCAACAACAACATA.......................................................................... 21 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................CACACAAACCACACATCGA...................................... 19 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GGACAAACCACAAATAGAGCA................................... 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................................CCACAAATAGAGCAA.................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ACCGCGGCACGAACTCGGTTGGACACACGCAGCTGTGATAATGTTCGACCCAGGCCGGCGGCTACGCCTACGCCGAGTTTTGCGCCGAGTTTGGCTTCGCCGGTCGTAACGGTTCCGCCACTGTTCATGACTTTGGCAACCATTCCGGGTTTTCCGTTGTTGTCGTTGTTGTTGTATTTTAGATTTAGTTTATTTTGTGTTTGGTGTTTAGCTCGTTCGTTGATAATGAAGTTGAAGAAGATGAACGTTGG
**************************************************************************..((.((((((..(((((..((.....))..))))))))))).))..............................****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060663
160_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR1106724
embryo_12-14h
 V116
male body		 SRR060687
9_0-2h_embryos_total
 V053
head
 M027
male body		 GSM1528803
follicle cells		 SRR060685
9xArg_0-2h_embryos_total
 SRR060659
Argentina_testes_total
 M047
female body
 V047
embryo
 SRR1106729
mixed whole adult body
 SRR060658
140_ovaries_total
............ACTCGGTTGGAAACTCGCGG........................................................................................................................................................................................................................... 20 3 12 3.25 39 0 8 13 0 5 0 0 0 6 4 0 0 0 3 0 0 0 0 0
............ACTCGGTTGGAAACTCGC............................................................................................................................................................................................................................. 18 2 9 1.22 11 0 6 1 0 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTTGTGTTTGGTGTTTAGCTC..................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GGTTCCGCCACTGTTCATGAC........................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TCATGACTTTGGCAACCATTC.......................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CGGCTACGCCTACGCCGAGTT............................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GGACACACGCAGCTGTGATAA.................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TGGCAACCATTCCGGGTTTTCCGTTGT........................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............ACTCGGTTGGAAACTCGCG............................................................................................................................................................................................................................ 19 3 20 0.80 16 0 5 3 0 2 0 0 0 0 4 0 0 0 1 1 0 0 0 0
..................................................CAGGCCGGCGGGAACGCCTA..................................................................................................................................................................................... 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TTTGGTGTTCAGGGCGTTCGT............................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................CGGGTTTTCTGTTGCTCTCGTTGT.................................................................................. 24 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................CGCGTACGCCGGGTCTTGC........................................................................................................................................................................ 19 3 15 0.27 4 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0
.........................................................................................................................TGGTCATGACTTTAGCCAC............................................................................................................... 19 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........AACTCGGTTGGAAACTCGC............................................................................................................................................................................................................................. 19 2 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GGTTTTCCGTTGTTCTCGTTGGT................................................................................. 23 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CTAATAAAGTTGAAGAAGA.......... 19 2 14 0.14 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
................................................................CGCGCACGCCGAGTCTTGC........................................................................................................................................................................ 19 3 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TATGGTGTTCGACCCAGGC.................................................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AACGAAGTTGAAGAAG........... 16 1 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........AAAAAATCGGTTGGACACAC............................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........................AGACGCTGCTGTGAGAATG................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:486753-487003 + dvi_8279 TGGCGC----CG--TGCTTGAGCCAACCTGTGTGCGTCGACACTATTACAAGCTGG---GTCCGGCCGCCGATGCGGATGC---GGCTCAAAACGCGGCTCAAA--------------------------CCG---------AAGCGGCCAGCATTGCCAAGGCGGTGACAAGTACTGAAACCGTTGGT------------------AAGGCCCAAAA----GGC--------------------------------AACAACAGCAACA---ACAACATAAAA----TCTAAATCAAATAAAACA---CA---A-----ACCACAA-----ATCGA-----GCA-----AGCAA----CT------AT-TACTTCAACTTCTTCTACTTGCA----ACC
droMoj3 scaffold_6473:12294161-12294386 - AAT------AGCAACAACAGCAACAA--CAGCAACAACAACAACAACAACAACAACGGTA-------------ACAACAACAA---TAGCAACCA---------CAGCAACAGCAACAACACAGTTTACAACG---------ACAAGAACAGCATCA--------------------ACAACAACAACAACAACAGCAATAGCTACGACAGAAACAAC----AGC--------------------------------AACAACAGCAACA---ACAAC------ATCTA---CAGTAACAACAACAACAA-----------CAACAG-----GCCAC-----AG-----C----------AGCAACAA--------C--------------------AAC
droGri2 scaffold_15203:6910436-6910708 + TGCACC----CA--TCGTTGAAGCACCCTGTGTGCGTCGACACTACTATCAGCTGG---GTCCATCCGATACGGATGTGGCCGCCGCTGACACGCCACCCGCAG--------------------------AAAGCACAGAACAAGCGGCCAGCATTGCCAAGGCGGTGACAAGTACTGAAACCGTTGGT------------------AAGGCATGAAA----AAC--------------ACATGAAAAAAACC--------T------ATTCAAAAAA--------------AAAAGAA---------------AACAAA---AAATTAAAAACACACACACTCAGCAAGAGCAACCAACA----------GCAACTACTTCTTCTTCTTACAAAACAAC
droWil2 scf2_1100000004515:3266641-3266855 - CAA------CAA--CTTGCAAAC-----CAACAACAACGACAACAACAACAACTTG---CAA----AACAACGACAACAACAA---CTACAACCA---------CGACAACAACAACAA-----------------------------CAACTACAACCACGACGACGACGACAACAACAACAACTTGC------------------AAGCCAAC-------AAC--------------------------------AACGACAACAACA---ACAACTTGCAAACCAA---CAACAACGACAACAACAA-----------CAACTT---------G-----CA-----AAACAA----CG------AC-AACAACA--------------------ACT
dp5 XR_group8:8008923-8008989 - CAA------CA----------------------------ACAACAACAACAACAGA---AAA--------------------------------------------------------------------------------AAGAGATGGAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTAAAACTGT-----AG-----C----------ACAAAAAA--------A--------------------TAT
droPer2 scaffold_13:80066-80128 - AAA------CAC----------------AATAAACGACAACAACAACAACAACAAC---G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT----ATTAAAATAAATACAATA---AA---A-----AA---------------------------------------------------------------------------CAC
droAna3 scaffold_12929:3015559-3015612 + GGCGTC-GGTGG--TGGAGGAGACTCCATGTGTGAAGCGACACTATTACAAGCTGG---G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395360:26910-26964 - TGGCGGCAGTGG--TGGAGGAGTCGCCCTGTGTGAAGCGTCACTATTACAAGCTGG---G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302517:10728-10780 - GGTGG----TGG--CGGAGGAGGCGCCCTGTGTCCGTCGTCATTATTACCAGCTGG---GCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453438:39795-40017 - TCCAAC----CG--CAGCTGAGACAA-----CTGCAACAGCAACAACAACAGCTTT---TAC----TACAACGGCAACCACAG---CAACAATCA---------GAACAATTGCTACTG-----------------------------CAGCT------------GGGACAACTACAGCAACAACTGCA------------------AAGGCTTTTAC----TGCAACAGCA--------GCAG------------------CAACAACA---ACGACGGCGAACACAGCTGAGACAACTGCAACA---GA---A-----AC------------TGC-----GA-----CAGCAA----CA------GC-AACAGCAACGGCTTTTA-----------CT
droEle1 scf7180000491044:335288-335336 + TGG------TGG--TGGAAGAGGCACCCTGTGTGCGGCGTCAATATTACCAACTGG---G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000776942:18940-18988 + TGG------TGG--TGGAAGAGGCACCCTGTGTGCGGCGTCAATATTACCAACTTG---G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302428:7154909-7154966 - CGG------CTG--CTGCTGCGGCTGC---------------------------------------------------------TGCTTCCATGGCTGCGTCGG--------------------------CCA---------ACGCGGCCAACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC
droTak1 scf7180000414549:60889-60937 + TGG------TGG--TGGAAGAGGCACCCTGTGTGCGGCGTCAATATTACCAGCTGG---G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409522:128165-128385 + AGG------TGG--TGGAAGAGGCACCCTGTGTGCGGCGTCAATATTACCAACTGG---GAA--------------------------------------------------------------------------------ACGAGGGGGAAACCCCAGAGACGCCCGAGAGCTCAGGGACCCCTGGT------------------AAGGCTTGAAT----TCAACCACTACCCGAAAAATTGCCAAAAAGA--------T------ATATAATAAA--------------AAAAAAA---AACA---AAAAAAA--AT-A--------ATATATACAAAATCA-----AGAAA----CT------CTGTACACCTAACTATGCTATCT--A----TAC
dm3 chrX:6449197-6449405 + AGG------TGG--TGGAAGAGGCACCCTGTGTGCGGCGTCAATATTACCAGCTGG---GAA--------------------------------------------------------------------------------ATGAGGGGGAAAACCCCGAGACGCCCGAGAGCTCAGGGACCCCTGGT------------------AAGGCTTGAAT----TCAACCACTACCCGAAA-GTAGGCAAAAAAAAAAAAATAAATACAAAA---AT--A--------------AAAAAAA---------------AACAAT------------------AAAATCA-----AGAAA----CT------CTGTACACCTAACTATGCTAT----------CT
droSim2 x:6063918-6064101 + AGG------TGG--TGGAAGAGGCACCCTGTGTGCGGCGTCAATATTACCAGCTGG---GAA--------------------------------------------------------------------------------ATGAGGGGGAAAACCCCGAGACGCCCGAGAGCTCAGGGACCCCTGGT------------------AAGGCTTGAAT----TCAACCAGTA--------GTAGGCAAAAAAAA--------------AATATATAAA--------------AAAAAAA---------------AACAAT------------------AAAATCA-----ACAAA----CT------CTGTACACCTA-------------------ACT
droSec2 scaffold_15:323419-323499 - GTG------TAA--AGTAAACCAAGCCTTAGTAAAAACTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCTAACAC--------------------------------AACAACCACAACA---ACAACAAAAAA----TCAAGAGAAAA----------------------G---------------------------------------------------------------------------AAA
droYak3 X:2424890-2425075 + AGG------TGG--TGGAAGAGGCGCCCTGTGTGCGGCGTCAATATTACCAGCTGG---GAA--------------------------------------------------------------------------------ATGAGGGGGAAAACCCCGAGACGCCCGAGAGCTCAGGGACCCCTGGT------------------AAGGCTTGAAT----TCAACCACTACCCGAAA-GTAGGCAAAAAAAA--------------ATAAAATTAA--------------AAAATAA---AACA---AACAAAACAAT------------------AAAATCA-----AGAAA-------------------------------------------CT
droEre2 scaffold_4690:15389101-15389268 + AGG------TGG--TGGAAGAGGCGCCCTGTGTGCGGCGTCAATATTACCAGCTGG---GAA--------------------------------------------------------------------------------ATGAGGGGGAAAACCCCGAGACGGCCGAGAGCTCAGGGACCCCTGGT------------------AAGGCTTGAAT----TCAACCACTACCCGAAA-GTAGGCAAAAAAAA--------------AA---ACAAAA--------------AAAAAA---------------CACAAT------------------CAAATC------------------------------------------------------AA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGGCGC----CG--TGCTTGAGCCAACCTGTGTGCGTCGACACTATTACAAGCTGG---GTCCGGCCGCCGATGCGGATGC---GGCTCAAAACGCGGCTCAAA--------------------------CCG---------AAGCGGCCAGCATTGCCAAGGCGGTGACAAGTACTGAAACCGTTGGT------------------AAGGCCCAAAA----GGC--------------------------------AACAACAGCAACA---ACAACATAAAA----TCTAAATCAAATAAAACA---CA---A-----ACCACAA-----ATCGA-----GCA-----AGCAA----CT------AT-TACTTCAACTTCTTCTACTTGCA----ACCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....GC----CG--TGCTTGAGCCAACCTGTGTGC.............................................................................................................................................................................................................................................................................................................................................................................2512.002000000000000000001000000000000000000000000000000000000000001000
.....C----CG--TGCTTGAGCCAACCTGTGTGC.............................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
................................TGCGTCGACACTATTACAAG............................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000010000000
..........................................CTATTACAAGCTGG---GTCC.................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................................................................................................CAA----CT------AT-TACTTCAACTTCTT................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................ACCTGTGTGCGTCGACACTATTACA..............................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................CAGCATTGCCAAGGCGGTGA.......................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................GGTGACAAGTACTGAAACCGTTG.....................................................................................................................................................................................................................2311.001000000000000000000000000000000010000000000000000000000000000000
.GGCGC----CG--TGCTTGAGCCAACCTGTGT...............................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
....................AGCCAACCTGTGTGCGTCGAC.......................................................................................................................................................................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................CAAAA----GGC--------------------------------AACAACAGCAACA---ACAACATA.......................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
..............................TGTGCGTCGACACTATTAC...............................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................GCAACA---ACAACATAAAA----TCTAAAT.........................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................AACA---CA---A-----ACCACAA-----ATCGA-----GCA-----AGC...............................................2511.001001000000000000000000000000000000000000000000000000000000000000
...................GAGCCAACCTGTGTGCGTCGA........................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................AACCTGTGTGCGTCGACACTA...................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
...................GAGCCAACCTGTGTGCGTCGACACT....................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................ATCGA-----GCA-----AGCAA----CT------AT-TACT..........................2111.001000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CA---A-----ACCACAA-----ATCGA-----GCA-----AGCAA----CT------A................................2611.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................CAAAACGCGGCTCAAA--------------------------CCG---------AA................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.................................GCGTCGACACTATTACAAGCTGG---GTCC.................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................GTTGGT------------------AAGGCCCAAAA----G.................................................................................................................................................................................1811.001000000010000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................AAACCGTTGGT------------------AAGGCCCAAAA----G.................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
..............................................TACAAGCTGG---GTCCGGCCGC...........................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................CTCAAA--------------------------CCG---------AAGCGGCCAGCATTGCC.................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
.........................................ACTATTACAAGCTGG---GTCCGG...............................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................GCAA----CT------AT-TACTTCAACTTCTTCTACT...........2711.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................CGA-----GCA-----AGCAA----CT------AT-TACTTCAACT....................2511.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................GAAACCGTTGGT------------------AAGGCCCAA........................................................................................................................................................................................2111.001000000000000000000000000000000000001000000000000000000000000000
........................................CACTATTACAAGCTGG---GTCC.................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
.....................GCCAACCTGTGTGCGTCGACA......................................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
........................................................................................CAAAACGCGGCTCAAA--------------------------CCG---------AAGCGGC...........................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................CGTTGGT------------------AAGGCCCAAAA----GG................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................................................................AA----CT------AT-TACTTCAACTTCTTCTACTTG.........2711.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TGCCAAGGCGGTGACAAG...................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAACTTCTTCTACTTGCA----ACC2111.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................AACAACAGCAACA---ACAACATA.......................................................................................................................2150.201000000000000000000000100000000000000000000000000000000000000000
droMoj3
AAT------AGCAACAACAGCAACAA--CAGCAACAACAACAACAACAACAACAACGGTA-------------ACAACAACAA---TAGCAACCA---------CAGCAACAGCAACAACACAGTTTACAACG---------ACAAGAACAGCATCA--------------------ACAACAACAACAACAACAGCAATAGCTACGACAGAAACAAC----AGC--------------------------------AACAACAGCAACA---ACAAC------ATCTA---CAGTAACAACAACAACAA-----------CAACAG-----GCCAC-----AG-----C----------AGCAACAA--------C--------------------AACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................AACAACAACAACAACAGCAATAGCT....................................................................................................................................................................................................2530.331100000
.....................................................................................................................................................................................CAACAACAACAACAGCAATA.......................................................................................................................................................................................................20200.051100000
............................................................................................CCA---------CAGCAACAGCAACAACA.......................................................................................................................................................................................................................................................................................20200.051000010
.....................AACAA--CAGCAACAACAACAACA...................................................................................................................................................................................................................................................................................................................................................................22200.051100000
droGri2
TGCACC----CA--TCGTTGAAGCACCCTGTGTGCGTCGACACTACTATCAGCTGG---GTCCATCCGATACGGATGTGGCCGCCGCTGACACGCCACCCGCAG--------------------------AAAGCACAGAACAAGCGGCCAGCATTGCCAAGGCGGTGACAAGTACTGAAACCGTTGGT------------------AAGGCATGAAA----AAC--------------ACATGAAAAAAACC--------T------ATTCAAAAAA--------------AAAAGAA---------------AACAAA---AAATTAAAAACACACACACTCAGCAAGAGCAACCAACA----------GCAACTACTTCTTCTTCTTACAAAACAACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................................................................................................................................................................................................................................................................................CAGCAAGAGCAACCAACA----------GCAACT.......................2411.00101
.....................................................................TACGGATGTGGCCGCCGCTGACACGCC................................................................................................................................................................................................................................................................................................................2711.00110
droWil2
CAA------CAA--CTTGCAAAC-----CAACAACAACGACAACAACAACAACTTG---CAA----AACAACGACAACAACAA---CTACAACCA---------CGACAACAACAACAA-----------------------------CAACTACAACCACGACGACGACGACAACAACAACAACTTGC------------------AAGCCAAC-------AAC--------------------------------AACGACAACAACA---ACAACTTGCAAACCAA---CAACAACGACAACAACAA-----------CAACTT---------G-----CA-----AAACAA----CG------AC-AACAACA--------------------ACTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................GACGACGACAACAACAACAAC.......................................................................................................................................................................................................................21200.20440000
..................................................................AACAACGACAACAACAA---CTACAACCA---------CGA.....................................................................................................................................................................................................................................................................................................2960.17101000
........................................................................GACAACAACAA---CTACAACCA---------CG......................................................................................................................................................................................................................................................................................................2260.17100100
..................................................................................................................AACAA-----------------------------CAACTACAACCACGACGACGACG.....................................................................................................................................................................................................................................2860.17100100
.....................................................................................................................AA-----------------------------CAACTACAACCACGACGACGACG.....................................................................................................................................................................................................................................2570.14100100
....................................................................................................................................................................GACGACGACAACAACAACAACT......................................................................................................................................................................................................................2270.14110000
......................................................................................................................................................................CGACGACAACAACAACAACTTGC------------------.................................................................................................................................................................................................2370.14101000
......................................................................................................................................................................CGACGACAACAACAACAACTTGC------------------A................................................................................................................................................................................................2470.14101000
.....................................................................................................................................................AACTACAACCACGACGACGACGAC...................................................................................................................................................................................................................................2480.13100100
.......................................................................................................................................................CTACAACCACGACGACGACGA....................................................................................................................................................................................................................................2180.13100100
...............................................................................................................................................................................................................................................................................................AA---CAACAACGACAACAACAA-----------CAACTT---------................................................................2690.11101000
.............................AACAACAACGACAACAACAACAACTT.........................................................................................................................................................................................................................................................................................................................................................2690.11101000
....................................................................................................................................................................................................................AAC-------AAC--------------------------------AACGACAACAACA---ACAACTT........................................................................................................................2690.11101000
.......................................................................................................................................................................GACGACAACAACAACAACT......................................................................................................................................................................................................................19130.08101000
..................................................................................................................................................................................................................................................................ACGACAACAACA---ACAACTTGC......................................................................................................................21160.06101000
........................................................................................................................................................................ACGACAACAACAACAACTTGC------------------.................................................................................................................................................................................................21160.06101000
.........................................................................................................................................................................................................................................................................................................ACGACAACAACAA-----------CAACTT---------G-----C.........................................................21160.06101000
....................................ACGACAACAACAACAACTTG---C....................................................................................................................................................................................................................................................................................................................................................21160.06101000
..............................................................................................................................................................CACGACGACGACGACAAC................................................................................................................................................................................................................................18170.06110000
dp5
CAA------CA----------------------------ACAACAACAACAACAGA---AAA--------------------------------------------------------------------------------AAGAGATGGAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTAAAACTGT-----AG-----C----------ACAAAAAA--------A--------------------TATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AAA------CAC----------------AATAAACGACAACAACAACAACAACAAC---G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT----ATTAAAATAAATACAATA---AA---A-----AA---------------------------------------------------------------------------CACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
GGCGTC-GGTGG--TGGAGGAGACTCCATGTGTGAAGCGACACTATTACAAGCTGG---G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....C-GGTGG--TGGAGGAGACTCC.....................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
droBip1
TGGCGGCAGTGG--TGGAGGAGTCGCCCTGTGTGAAGCGTCACTATTACAAGCTGG---G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GGTGG----TGG--CGGAGGAGGCGCCCTGTGTCCGTCGTCATTATTACCAGCTGG---GCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TCCAAC----CG--CAGCTGAGACAA-----CTGCAACAGCAACAACAACAGCTTT---TAC----TACAACGGCAACCACAG---CAACAATCA---------GAACAATTGCTACTG-----------------------------CAGCT------------GGGACAACTACAGCAACAACTGCA------------------AAGGCTTTTAC----TGCAACAGCA--------GCAG------------------CAACAACA---ACGACGGCGAACACAGCTGAGACAACTGCAACA---GA---A-----AC------------TGC-----GA-----CAGCAA----CA------GC-AACAGCAACGGCTTTTA-----------CTSizeHit CountTotal NormTotal
No Reads
droEle1
TGG------TGG--TGGAAGAGGCACCCTGTGTGCGGCGTCAATATTACCAACTGG---G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TGG------TGG--TGGAAGAGGCACCCTGTGTGCGGCGTCAATATTACCAACTTG---G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CGG------CTG--CTGCTGCGGCTGC---------------------------------------------------------TGCTTCCATGGCTGCGTCGG--------------------------CCA---------ACGCGGCCAACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCSizeHit CountTotal NormTotal
No Reads
droTak1
TGG------TGG--TGGAAGAGGCACCCTGTGTGCGGCGTCAATATTACCAGCTGG---G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AGG------TGG--TGGAAGAGGCACCCTGTGTGCGGCGTCAATATTACCAACTGG---GAA--------------------------------------------------------------------------------ACGAGGGGGAAACCCCAGAGACGCCCGAGAGCTCAGGGACCCCTGGT------------------AAGGCTTGAAT----TCAACCACTACCCGAAAAATTGCCAAAAAGA--------T------ATATAATAAA--------------AAAAAAA---AACA---AAAAAAA--AT-A--------ATATATACAAAATCA-----AGAAA----CT------CTGTACACCTAACTATGCTATCT--A----TACSizeHit CountTotal NormTotal
No Reads
dm3
AGG------TGG--TGGAAGAGGCACCCTGTGTGCGGCGTCAATATTACCAGCTGG---GAA--------------------------------------------------------------------------------ATGAGGGGGAAAACCCCGAGACGCCCGAGAGCTCAGGGACCCCTGGT------------------AAGGCTTGAAT----TCAACCACTACCCGAAA-GTAGGCAAAAAAAAAAAAATAAATACAAAA---AT--A--------------AAAAAAA---------------AACAAT------------------AAAATCA-----AGAAA----CT------CTGTACACCTAACTATGCTAT----------CTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................AAA-GTAGGCAAAAAAAAA.................................................................................................................................................18110.00100000000000000000000000000000000000000000000000000000000000000000000000000000022330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................GAGAGCTCAGGGACCCCTGGT------------------.................................................................................................................................................................................................2119.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000008
.....................................................................................................................................................................................................................................................................................................................................................ATCA-----AGAAA----CT------CTGTACACCTAACTA..................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GG--TGGAAGAGGCACCCTGTGTGCGGCGT........................................................................................................................................................................................................................................................................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........TGG--TGGAAGAGGCACCCTGTGTGCGGC..........................................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010300000
......................................................................................................................................................................CCGAGAGCTCAGGGACCCCTGCC------------------.................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................GGACCCCTGGT------------------AAGGCTTGAAT----..................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GG--TGGAAGAGGCACCCTGTGTGCGGC..........................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000
...................................................................................................................................................................CGCCCGAGAGCTCAGGGA...........................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........TGG--TGGAAGAGGCACCCTGTGTGCGG...........................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000
...............GGAAGAGGCACCCTGTGTGCGGCGT........................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................T----TCAACCACTACCCGAAA-GTAG............................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................T------------------AAGGCTTGAAT----TCAACCACT.........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................ACCAGCTGG---GAA--------------------------------------------------------------------------------ATGAGGGGGAAAACC...................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................GAGGGGGAAAACCCCGAGAC............................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................T------------------AAAATCA-----AGAAA----CT------CTGTACACCTAAC....................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TATTACCAGCTGG---GAA--------------------------------------------------------------------------------ATGAGGG...........................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................GTCAATATTACCAGCTGG---GA...................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................CCCCTGGT------------------AAGGCTTGAAT----TCAACCAC..........................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................TACCCGAAA-GTAGGCAAAAAAAAAAA...............................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................CCCCTGGT------------------AAGGCTTGAAT----TCAACCACT.........................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TTACCAGCTGG---GAA--------------------------------------------------------------------------------ATGAGGG...........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...............................GTGCGGCGTCAATATTACCAGC...........................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................................................................................................................................TCAGGGACCCCTGGT------------------AAGGCT...........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................CGCCCGAGAGCTCAGGGACCCCTGGT------------------.................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..................................................................................................................................................................................................................GCTTGAAT----TCAACCACTACCCGAAA-G...............................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................T------------------AAGGCTTGAAT----TCAACCACTACC......................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................A--------------------------------------------------------------------------------ATGAGGGGGAAAACCCCGAGACG...........................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................CA-----AGAAA----CT------CTGTACACCTAACTAT.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GG--TGGAAGAGGCACCCTGTGTGCG............................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..................................................................................................................................................................ACGCCCGAGAGCTCAGGGACC.........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TGGT------------------AAGGCTTGAAT----TCAACCACT.........................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................GAGGGGGAAAACCCCGAGACGCCCGAG.....................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................CGAGAGCTCAGGGACCCCTGGT------------------.................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................GCCCGAGAGCTCAGGGACCCCTGGT------------------AA...............................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................CGAAA-GTAGGCAAAAAAAAAAAAATA...........................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................GAGAGCTCAGGGACCCCTGGT------------------A................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................................................................................................................................................................................................................CTTGAAT----TCAACCACTACCC.....................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................AAACCCCGAGACGCCCGAGAG...................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................CTGGT------------------AAGGCTTGAAT----TCAACCACT.........................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CCCTGTGTGCGGCGTCAAT....................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...................................................................................................................................................................CGCCCGAGAGCTCAGGGACCCCTGGT------------------AA...............................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TGGT------------------AAGGCTTGAAT----TCAACC............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CCCTGTGTGCGGCGTCAATATTACCAGC...........................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................A-----AGAAA----CT------CTGTACACCTAAC....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..G------TGG--TGGAAGAGGCACCCTGTGTGCGGC..........................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..................AGAGGCACCCTGTGTGCGGCGTCA......................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
..............................................................................................................................................................................................................................................................................................................................................................AGAAA----CT------CTGTACACCTAACT...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................CCCCGAGACGCCCGAGAGCTCAGGGACC.........................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................AGAGCTCAGGGACCCCTGGT------------------AAGGCT...........................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................AT----TCAACCACTACCCGAAA-GT..............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................TACCCGAAA-GTAGGCAAAAAAAAAAAAA.............................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GTGTGCGGCGTCAATATTACCAGCTG.........................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................CGAGAGCTCAGGGACCCCTGGT------------------AAGGC............................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................AGAGCTCAGGGACCCCTGGT------------------AAGG.............................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................GAAAACCCCGAGACGCCCGAGAGCT.................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................T------------------AAAATCA-----AGAAA----CT------CTGT.............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................CTGG---GAA--------------------------------------------------------------------------------ATGAGGGGGAAAAC....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................CCCTGGT------------------AAGGCTTGAAT----TCAACCAC..........................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TTACCAGCTGG---GAA--------------------------------------------------------------------------------ATGAGC............................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................GAA--------------------------------------------------------------------------------ATGAGGGGGAAAACC...................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGTGTGCGGCGTCAATATTACCAGCTGG---.....................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AAA-GTAGGCAAAAAAAAAA................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AGGCACCCTGTGTGCGGCGTC.......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.........TGG--TGGAAGAGGCACCCTGTGTGCGGCGT........................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................CCGAGACGCCCGAGAGCTCAGGGA...........................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................CCTGGT------------------AAGGCTTGAAT----TCAACCACT.........................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................ACCCCGAGACGCCCGAGAGC..................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TTACCAGCTGG---GAA--------------------------------------------------------------------------------ATGAG.............................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............................................ACCAGCTGG---GAA--------------------------------------------------------------------------------ATGAGGGG..........................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.GG------TGG--TGGAAGAGGCACCC....................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
.........................................................................................................................................................................................................................................CCGAAA-GTAGGCAAAAAAAAAAA...............................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................AGACGCCCGAGAGCTCAGG.............................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................T------------------AAAATCA-----AGAAA----CT------CTGTACACCT.......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................CAAT------------------AAAATCA-----AGAAA----CT------CTGTACACC........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................CAACCACTACCCGAAA-GTAGGC..........................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................AACCCCGAGACGCCCGAGAGCTCAGGGA...........................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................AT------------------AAAATCA-----AGAAA----CT------CTGTACACCT.......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................GACGCCCGAGAGCTCAGGGACCCCTGGT------------------.................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
....................................................................................................................................................................................................................................................................................................................................................AATCA-----AGAAA----CT------CTGTACACCA.......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CAATATTACCAGCTGG---GAA--------------------------------------------------------------------------------ATGAGGG...........................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............................................................................................................................................................................................................AAGGCTTGAAT----TCAACCA...........................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................A---AT--A--------------AAAAAAA---------------AACAAT------------------AAAA..........................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
AGG------TGG--TGGAAGAGGCACCCTGTGTGCGGCGTCAATATTACCAGCTGG---GAA--------------------------------------------------------------------------------ATGAGGGGGAAAACCCCGAGACGCCCGAGAGCTCAGGGACCCCTGGT------------------AAGGCTTGAAT----TCAACCAGTA--------GTAGGCAAAAAAAA--------------AATATATAAA--------------AAAAAAA---------------AACAAT------------------AAAATCA-----ACAAA----CT------CTGTACACCTA-------------------ACTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................CA-----ACAAA----CT------CTGTACACCT.......................1913.00310200000000000000
..........GG--TGGAAGAGGCACCCTGTGTGCGGC..........................................................................................................................................................................................................................................................................................................................................................................2612.00200020000000000000
...................................................................................................................................................................................................................................................................................................................................................AAATCA-----ACAAA----CT------CTGTACACCG.......................2311.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................TCA-----ACAAA----CT------CTGTACACC........................1911.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................ATCA-----ACAAA----CT------CTGTACACCG.......................2111.00101000000000000000
........................................CAATATTACCAGCTGG---GAA--------------------------------------------------------------------------------ATGAGG............................................................................................................................................................................................................................................................2511.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................AATCA-----ACAAA----CT------CTGTACACCTA-------------------ACT2611.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................AATCA-----ACAAA----CT------CTGTACACCT.......................2211.00101000000000000000
.........TGG--TGGAAGAGGCACCCTGTGTG..............................................................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................CA-----ACAAA----CT------CTGTACACCTA-------------------ACT2311.00101000000000000000
............................................................................................................................................................................................................................................................................................................................CAAT------------------AAAATCA-----ACAAA----CT------CTGTACACC........................2711.00100100000000000000
............................................................................................................................................................................................................................................................................................................................CAAT------------------AAAATCA-----ACAAA----CT------CTGTACACCT.......................2811.00101000000000000000
............................................................................................................................................................................................................................................................................................................................CAAT------------------AAAATCA-----ACAAA----CT------CTGG.............................2211.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................A-----ACAAA----CT------CTGTACACCT.......................1811.00101000000000000000
...............................................................................................................................................................................................................AAGGCTTGAAT----TCAACCAGT.........................................................................................................................................................................2011.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................AAA----CT------CTGTACACCTA-------------------ACT1911.00100100000000000000
...............................................................................................................................................................................................................................CAACCAGTA--------GTAGGCAAAAAA....................................................................................................................................................2111.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................TCA-----ACAAA----CT------CTGTACACCTA-------------------...2111.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................AT------------------AAAATCA-----ACAAA----CT------CTGTACACC........................2511.00100100000000000000
...........................................................GAA--------------------------------------------------------------------------------ATGAGGGGGAAAACCCCGAGA.............................................................................................................................................................................................................................................2411.00100010000000000000
......................................................................................................................................................................................................................................................................................................................................................TCA-----ACAAA----CT------CTGTACACCTA-------------------AA.2311.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................AATCA-----ACAAA----CT------CTGTACACC........................2111.00100100000000000000
............................................................................................................................................................................................T------------------AAGGCTTGAAT----TCAACCAGTA--------GTAGGCAA........................................................................................................................................................3011.00100000010000000000
.................................................................................................................................................................GACGCCCGAGAGCTCAGGGACCCCTG.....................................................................................................................................................................................................................2611.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................AAAATCA-----ACAAA----CT------CTGTACACCT.......................2411.00110000000000000000
droSec2
GTG------TAA--AGTAAACCAAGCCTTAGTAAAAACTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCTAACAC--------------------------------AACAACCACAACA---ACAACAAAAAA----TCAAGAGAAAA----------------------G---------------------------------------------------------------------------AAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AGG------TGG--TGGAAGAGGCGCCCTGTGTGCGGCGTCAATATTACCAGCTGG---GAA--------------------------------------------------------------------------------ATGAGGGGGAAAACCCCGAGACGCCCGAGAGCTCAGGGACCCCTGGT------------------AAGGCTTGAAT----TCAACCACTACCCGAAA-GTAGGCAAAAAAAA--------------ATAAAATTAA--------------AAAATAA---AACA---AACAAAACAAT------------------AAAATCA-----AGAAA-------------------------------------------CTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................CAATATTACCAGCTGG---GAA--------------------------------------------------------------------------------ATGAGGG...........................................................................................................................................................................................................................................................2611.00101000000000
.....................................................................................................................................................................CCCGAGAGCTCAGGGACCCCTGGT------------------A................................................................................................................................................................................................2511.00100000010000
..................................................................................................................................................................................................................................................AGGCAAAAAAAA--------------ATAAAATT............................................................................................................................2011.00101000000000
...............GGAAGAGGCGCCCTGTGTGCGGC..........................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
......................................................................................................................................................................CCGAGAGCTCAGGGACCCCTGGT------------------AAGGC............................................................................................................................................................................................2811.00100000010000
.................AAGAGGCGCCCTGTGTGCGGC..........................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..............TGGAAGAGGCGCCCTGTGTGCGGC..........................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
..........GG--TGGAAGAGGCGCCCTGTGTGCGGCGT........................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
......................................GTCAATATTACCAGCTGG---GAA--------------------------------------------------------------------------------ATGA..............................................................................................................................................................................................................................................................2511.00101000000000
......................................................................................................................................................................CCGAGAGCTCAGGGACCCCTGGT------------------.................................................................................................................................................................................................2311.00100000010000
...............GGAAGAGGCGCCCTGTGTGCGGCGT........................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.....................................................................................................................................................................................................................TGAAT----TCAACCACTACCCGAAA-GT..............................................................................................................................................................2411.00101000000000
........................................................................................................................................................................................................................AT----TCAACCACTACCCGAAA-GT..............................................................................................................................................................2111.00101000000000
droEre2
AGG------TGG--TGGAAGAGGCGCCCTGTGTGCGGCGTCAATATTACCAGCTGG---GAA--------------------------------------------------------------------------------ATGAGGGGGAAAACCCCGAGACGGCCGAGAGCTCAGGGACCCCTGGT------------------AAGGCTTGAAT----TCAACCACTACCCGAAA-GTAGGCAAAAAAAA--------------AA---ACAAAA--------------AAAAAA---------------CACAAT------------------CAAATC------------------------------------------------------AASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................AAA--------------AAAAAA---------------CACAAT------------------CAAAT.........................................................2011.0011000000
...............................................................................................................................................................GAGACGGCCGAGAGCTCAGGG............................................................................................................................................................................................................................2111.0010000100
.......................................................................................................................................................................................CCTGGT------------------AAGGCTTGAAT----TCAAC.............................................................................................................................................................................2211.0010100000
.............................................................................................................................................................................CTCAGGGACCCCTGGT------------------AAGGCTT..........................................................................................................................................................................................2311.0010000100
........................................................................................................................................................................GAGAGCTCAGGGACCCCTGGT------------------.................................................................................................................................................................................................2111.0011000000
..........GG--TGGAAGAGGCGCCCTGTGTGCG............................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
..................................................................................................................................................................................................................GCTTGAAT----TCAACCACTACCC.....................................................................................................................................................................2111.0010100000

Generated: 05/16/2015 at 09:44 PM