ID:

dvi_8277

 Coordinate:

scaffold_12928:486025-486144 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.1 -25.0 -25.0

Flybase annnotation

exon [dvir_GLEANR_17236:4]; CDS [Dvir\GJ16729-cds]; CDS [Dvir\GJ16729-cds]; exon [dvir_GLEANR_17236:3]; intron [Dvir\GJ16729-in]

No Repeatable elements found

mature
  1. scaffold_12928:464263-464290 +
  2. dvi_8277  scaffold_12928:486025-486052 +
star
  1. scaffold_12928:464360-464380 +
  2. dvi_8277  scaffold_12928:486122-486142 +

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------##################################################
CTCGACGACGGTGACACGCCATGTGGGCGTGCCCACTACCAAGAGCGTGGGTAAAACACTCGTTACCAAGCAGCAGCAGCAGCAACAAGCTGCTGTGAAGACCCGTAACGTTCAAGGTTCTAACGAAACAATCGATCTTATGCCGCAGCGTTCGCCCAAATCGCCAGCAGCAACGAAATCCACAACAATAACAGCAACGACCACAACCACGATTGGCAAT
**************************************************..........((((((.........((((((((.....))))))))........)))))).....(((.....(((.....))).......)))...(((...........)))....**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M061
embryo
 SRR060657
140_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060679
140x9_testes_total
 GSM1528803
follicle cells		 SRR060665
9_females_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060677
Argx9_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 V047
embryo
 SRR060671
9x160_males_carcasses_total
 SRR060663
160_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR1106727
larvae
 V053
head
 V116
male body		 SRR060682
9x140_0-2h_embryos_total
..CGACGACGGTGACACGCCATGTGGGC................................................................................................................................................................................................ 26 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AACAGCAACGACCACAACCAC.......... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..CGACGACGGTGACACGCCATGTGGGCGT.............................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..CGACGACGGTGACACGCCATGTGGG................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....CGACGGTGACACGCCATGTGGGCGT.............................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...GACGACGGTGACACGCCATGTGGGC................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......ACGGTGACACGCCATGTGGGC................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................ATAACAGCAACGACCACAACCACGAT....... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....CGACGGTGACACGCCATGTGGGCGTGCC........................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................ATAACAGCAACGACCACAACC............ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAAACACTCGTTACCAAGCAGCAGCA.............................................................................................................................................. 28 0 2 1.00 2 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................GGTAAAACACTCGTTACCAAGCAGCA................................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GATCTTATGCCGCGGCGTTCGCCCAAA............................................................ 27 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................ACCAAGAGCGTGGGTAAAACACT................................................................................................................................................................ 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TGAAGACCCGTAACGTTCAAGGTC..................................................................................................... 24 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................CGCCAGCAGCAACGAAATCCACA.................................... 23 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................GGCGTGCCCACTACCAAGAGCGT............................................................................................................................................................................ 23 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GCGTTCGCCCAAATCGCCAGC.................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................CTTATGCCGCAGCGTTCGCC................................................................ 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................GCGTGCCCACTACCAAGAGCG............................................................................................................................................................................. 21 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GCGTTCGCCCAAATCGCC....................................................... 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAAACACTCGTTACCAAGCA.................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TCGCCCAAATCGCCAGCAGCA................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GCCCAAATCGCCAGCAGCAACG............................................. 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAAACACTCGTTACCAAGCAGCAGCAG............................................................................................................................................. 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................GAAACAATCGATCTTATGCCGCAGC....................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CAAATCGCCAGCAGCAACGA............................................ 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................ACTACCAAGAGCGTGGGT........................................................................................................................................................................ 18 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CAACAAGCTGCTGCGAAGACCCGTAAC............................................................................................................... 27 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................AGCTGCTGTGAAGACCCGTAA................................................................................................................ 21 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................CTTATGCCGCAGCGTTCGCCCA.............................................................. 22 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................ATGTGGGCGTGCCCACTACCAAGAGCGTG........................................................................................................................................................................... 29 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GCGTTCGCCCAAATCGCCAGCAGC................................................. 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GTTCAAGGTTCTAACGAAACAATCG...................................................................................... 25 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................GCTGTGAAGGCCCGTAAC............................................................................................................... 18 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................GCAACAAGCTGCTGTGAAGACCCGTAAC............................................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TGCCGCAGCGTTCGCCCAA............................................................. 19 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................GTGCCCACTACCAAGAGCGTGG.......................................................................................................................................................................... 22 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................CATGTGGGCGTGCCCACTACCAAGAGC.............................................................................................................................................................................. 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GATCTTATGCCGCAGCGTTCGCCCAAA............................................................ 27 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................GCGTGGGTAAAACACTCGT............................................................................................................................................................. 19 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................AACAAGCTGCTGTGAAGACC..................................................................................................................... 20 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GCAACAAGCTGCTGTGAAGACCCGT.................................................................................................................. 25 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TGAAGACCCGTAACGTTCAAGGTT..................................................................................................... 24 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CGCCCAAATCGCCAGCAGCAACGA............................................ 24 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................GTTCGCCCAAATCGCCAGC.................................................... 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CAATCGATCTTATGCCGCAGC....................................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................CTACCAAGAGCGTGGGTAAAACACT................................................................................................................................................................ 25 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................GCAGCAGCAGCAACAAGCTGC............................................................................................................................... 21 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CAACGAGCGCAACCACTATT...... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................CAACAGCCGCAACAAGCTCCT.............................................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GAGCTGCTGCCACTGTGCGGTACACCCGCACGGGTGATGGTTCTCGCACCCATTTTGTGAGCAATGGTTCGTCGTCGTCGTCGTTGTTCGACGACACTTCTGGGCATTGCAAGTTCCAAGATTGCTTTGTTAGCTAGAATACGGCGTCGCAAGCGGGTTTAGCGGTCGTCGTTGCTTTAGGTGTTGTTATTGTCGTTGCTGGTGTTGGTGCTAACCGTTA
****************************************************..........((((((.........((((((((.....))))))))........)))))).....(((.....(((.....))).......)))...(((...........)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060658
140_ovaries_total
 SRR060654
160x9_ovaries_total
 SRR060688
160_ovaries_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
......................................................................................................................................................................................................CTGTTGTTGGTGCTAACCGTT. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGCTGGTGTTGGTGCTAACCG... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................TTGCAAGTTCCAAGATTGCTT............................................................................................. 21 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0
...............................................................................................................................TGTTAGCTAGAATACGGCGTC........................................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GTTTTAGCGGTCGTCGTTGCT............................................ 21 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0
...................................................................................................................CCAAGATTGCTTTGTTAGCTA.................................................................................... 21 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................ATGGTCGTCGTTGCTTTAGGTG..................................... 22 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................GGTCGTCGTTGCTTTAGGTGT.................................... 21 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................TGGTCGTCGTTGCTTTAGGTGT.................................... 22 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................TCGCAAGCGGGTTTAGCGGTC..................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTTTTTTATTGGCGTTGCTGGT................. 22 3 17 0.06 1 0 0 0 0 0 0 0 0 1 0
.........................................................TTATCACTGGTTCGTCGTCG............................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:485975-486194 + dvi_8277 CTCGACGACGGTGACACGCC---ATGT------------GGGCGTGC--CCAC-------------TACCAAG---------AGCGTGGGTAAAACACTCGTTACCAAGC---AG---------------------------------------CAG---CAGCAGCAACAAGC---TGCTG-TG---AAGACCCGT------------------AACGTTCAAGGTTCTAACGAAACAATCGATCTTATGCC----GCAGCGTTC--------GCCCAAATC------------------------------------------GCCAG------------------------CAGCAACGAA----------------ATCCACAACAATAACAGCAACGACCACAACCACGATTGGCAAT
droMoj3 scaffold_6328:1445317-1445536 + CTCCACCACGGTCACACGAC---ATGT------------GGGCGTGC--CC----------------------------AAGACCATTGCCAAGACAACCGTTAGCAAGC---AG---------------------------------CAGCAGCAG---CAGCAGCAGCAAAC---TGTTG-TC---AAGACACGC------------------AGCGTGCAGGGGTCGAATGAGACAATTGATCTAACGCC----GCAGCGTTT--------GCCCAAATC------------------------------------------GCCAA------------------------CAGCGAAATCAAC------AACAACA----ACAAC------GACCACGACAACAACAACGATTGGCAAT
droGri2 scaffold_15203:6909636-6909858 + CTCGACGACAGTGACACGTGGCCCTGT------------GGGCGTGC--CCGC-------------TGG---------CAAGAGTGTGGGTAAAACACACGTTACCAAGC---AG---------------------------------------CAA---CAGCAGCAGCAGAC---TGTTG-TG---AAGACCCGT------------------AACGTTCAAGGTTCTAACGAAACAATTGATCTTATGCC----GCAGCGTTC--------GCCCAAATC------------------------------------------GCCAG------------------------CAGCCGCAAC----------------AAAAACGACGACCACAACAACAACAACAACAACGATTGGCAAT
droWil2 scf2_1100000004515:4381860-4382093 + CTCGACGACGGTGACACGCC---ATGCCGCGCCAGC---CAGCCACG--TTACCAC----------CACCAGCACCACCAAAAGTGTGGGTAAAAACGTTGTTACCAAGC---AG---------------------------------------CAG---CAGCAGCATCACAC---TGTTG-TG---AAATCCCGT------------------AATGTGCAAGGTTCTAACGAAACAATTGATCTTATGCC----GCAGCGTTT--------GCAAAAATC------------------------------------------CCCGT------------------------CTCCGACGAGCGGAACGAC-------CAAAATAACGACCACTAAAACG----------------ACAAC
dp5 XL_group1a:3548095-3548302 - CACCACAACGGTGACAAGGC---AGACGGC---------G---GGTGGATCAGCACCAGCCACTCC------------CAAGACTGTGGCCAAAACGC---------------CGCCGCCGCAGCAACAGGTGGTTAA------------------------GCAGCAGCAGGT---TACTA-CC---AAGACGATC---------------------------------------------------------------------AGCAACGAACCCAAGTC------------------------------------------GCCCA------------------------CTCAAAAGGCGGCAACGAC-------CACTGTAACGACCACGACAACCAGCACCACCAAGACAGGTGGT
droPer2 scaffold_11:86915-87122 - CACCACAACGGTGACAAGGC---AGACGGC---------G---GGTGGATCAGCACCAGCCACTCC------------CAAGACTGTGGCCAAAACGC---------------CGCCGCCGCAGCAACAGGTGGTTAA------------------------GCAGCAGCAGGT---TACTA-CC---AAGACGATC---------------------------------------------------------------------AGCAACGAACCCAAGTC------------------------------------------GCCCA------------------------CTCAAAAGGCGGCAACGAC-------CACTGTAACGACCACGACAACCAGCACCACCAAGACAGGTGGT
droAna3 scaffold_13047:141177-141313 + AGCTGCAGCAGCAGCAACTG---CAG--GT------TAGTAGTAGCA--ATA---------------------------------------------------------------------------------ATTATGCAGCAACACTGCTCGATG---CAGCAGCT---TTC---TG----CT---ATGAGACCC---------------------------------------------------------------------ACTACATGATGGAGGCC------------------------------------------ACCCA------------------------CTATAGCAGCAGC------AGCAACT----ACA-------------------------------ACAAT
droBip1 scf7180000395360:27430-27578 - CTCCACCACGGTGACCAGGC---ACTC------------GGGCGGGA--ACTC-------------TACCACCACCA-----------------------------------------CCACAA-----------------------CCACCAAGAA---TAGAACCACCAAGCCACCA---GTT---CGAGGTCCC------------------------------------------------------------------------AGCGAGCCGCGGTC------------------------------------------CCCAA------------------------CACCGAAGACGGG------AGGAACC----GTGAC---------CTCCACCACGA--------------
droKik1 scf7180000302517:11246-11465 - CTCTAGCACGGTGACCAGGC---ATACGAC---------AGGAGGAA--CCAC-------------TACTAGCACCA----------------------------------------------------------------------CCACAAAGACGAGCAAGAAGCCAAGTCCAGTG---GTGAGCCGAGGTCCC------------------------------------------------------------------------AGCGAGCCCAGGTCGCCAACACCGAAGGCGGGAGGACGTCACAGCGAGCCAAGATCGCCCA------------------------CACCAAAGGCAGGAGGAGC-------TACAGTGACAACCACAACGACTACGACCACAAGCAGTACCATT
droFic1 scf7180000454072:954631-954778 - CTCGACAACCGTGACCCGGC---ACAC------------TGGTGGCA--CCAC-------------CACCAGCAGCA----------------------------------------------------------------------CCACCAAGAC---CAAGACCACCAAGC---CG---GTG---CGGGGTCCC------------------------------------------------------------------------AGCGAGCCGAGGTC------------------------------------------GCCCA------------------------CCCCGAAAACAGG------AGGAAGT----GTGAC---------CACTACCACGACCCACG------TT
droEle1 scf7180000491044:334662-334816 + CTCGACCACTGTGACCAGAC---ATAC------------GGGTGGCA--CCAC-------------CAGCAGCAGCA--------------------------------------------GCA-----------------------CCACCAAGAC---CAAGACCACCAGGC---CG---GTG---AAGAGTCCC------------------------------------------------------------------------AGTGAGCCGAGGTC------------------------------------------GCCCA------------------------CGCCGAAAACAGG------AGGAAAT----GTGAT---------CACTACCACGACCACAACCACTA--
droRho1 scf7180000776942:18353-18504 + CTCAACCACTGTGACCAGAC---ACAC------------GGGTGGCC--ACAC-------------CACCAGCAGCA----------------------------------------------------------------------CCACCAAGAC---CAAGACCACCAGGC---CG---GTG---AAGAGTCCC------------------------------------------------------------------------AGCGAGCCGAGGTC------------------------------------------GCCCA------------------------CACCGAAAGCAGG------AGGAAAT----GTGAT---------TACCACCACGACCACAACCACAA--
droBia1 scf7180000302428:7155298-7155473 - CCCAACAGCAGCAGCAACGC---CAAC------------TGGCCGC----C----------------------------GCCGCCGTGGCCACAGCAGCAGTCGCCCAAC---AG---------------------------------CAGCAGCAG---CAGCAGCAGCAAGC---TGTTG-TC--CAGCAGCAAC---------------------------------------------------------------------AGCAGCAGGTTGTTGCC-----------------------------GCCGC---------CCAG------------------------CAGCAGCACC----------------ACCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAA--------
droTak1 scf7180000414549:60309-60474 + CTCGACCACTGTGACCAGGC---ATCAGAC---------AGGTGGCA--GCAC-------------CACCAG---CA----------------------------------------------------------------------CCACCAAGAC---CAAGACCACCAAGCCACCG---GTGTCCAGAGGTCCC---------------------------------------------------------------------AGTAGTGAGCCCAGGTC------------------------------------------GCCCA------------------------CCCCAAAAACAGCGGG---AGGAGGA----GTAAT---------AACCACCACGACCACTATTAGCAGC
droEug1 scf7180000409522:127505-127658 + CTCGACCACTGTGACTAGGC---ATAC------------AGGTGGCA--CTAC-------------CACCACCAGCA----------------------------------------------------------------------CTACCAAGAC---CAAGACCAGCAAGC---CG---GTT---AAGAGTCCC------------------------------------------------------------------------AGCGAGCCAAGGTC------------------------------------------CCCAA------------------------CCCCGAAATCAGG------AGGAAAT----GTTAT---------TACCACTACGACTACCATTAGCAGC
dm3 chr3R:13956419-13956665 + CA--ACAGCTGCAACACAAC--AACAC------------GAGCAGCA--GC---AACAGCAATTGC------------CACCACAGT---------------CACCA-ACAGCAG---------------------------------CAGCAGCAG---CAGCAGCAGCAACA---CA----TG---A--GCTCCCCGCAACAACAATACCAACAACACCAAATA--------------------TTACACCAACAACAACAATT--------GCC-AAATC------------------------------------------ACCACCATCATCACCATCACCACCACCACCATCACAGTCAGCTACAAC-------AACTCCAACAACAACAGCAACAACAACAACAA-CAGCAGCAAC
droSim2 x:6063304-6063460 + CTCGACCACTGTGACTAGGC---ACACCAC---------CGGTGGCA--ATGT-------------CACTAGCAACA----------------------------------------------------------------------CCATCAAGAC---CAAGACCACCAAGC---CG---GTG---AAAACTCCC------------------------------------------------------------------------AGCGAGCCAAGGTC------------------------------------------GCCCA------------------------CCCCAAGGGCAGG------AGGAAGT----GTGAC---------CACCACCACGACCACCATTACCACC
droSec2 scaffold_4:343833-343989 - CTCGACCACAGTGACTAGGC---ACACCAC---------CGGTGGCA--ATGT-------------CACTAGCAACA----------------------------------------------------------------------CCATCAAGAC---CAAGACCACCAAGC---CG---GTG---AAAACTCCC------------------------------------------------------------------------AGCGAGCCAAGGTC------------------------------------------GCCCA------------------------CCCCAAAGGCAGG------AGGAAGT----GTGAC---------CACCACCACGACCACCATTACCACC
droYak3 X:2424243-2424396 + CTCGACCACTGTGACCAGGC---ACAC------------AGGTGGCA--ATGT-------------CACCAGCAGCA----------------------------------------------------------------------CCATCAAGAC---CAAGACCACCAAGC---CG---GTG---AAAACTCCC------------------------------------------------------------------------AGCGAGCCCAGGTC------------------------------------------GCCCA------------------------CCCCAAAAGCAGG------AGGAAGT----GTGAC---------CACCACCACGACCACCATTAGCAGT
droEre2 scaffold_4690:15388483-15388636 + CTCGACCACTGTGACCAGGC---ACAC------------AGGTGGCA--ATGT-------------CACCAACAGCA----------------------------------------------------------------------CCATTAAGAC---CAAGACCACCAAGC---CG---GTG---AAAACTCCC------------------------------------------------------------------------AGCGAGCCAAGGTC------------------------------------------GCCCA------------------------CCCCAAAAGCAGG------AGGAAGT----GTGAC---------CACCACCACGACCACCATTAGCAGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CTCGACGACGGTGACACGCC---ATGT------------GGGCGTGC--CCAC-------------TACCAAG---------AGCGTGGGTAAAACACTCGTTACCAAGC---AG---------------------------------------CAG---CAGCAGCAACAAGC---TGCTG-TG---AAGACCCGT------------------AACGTTCAAGGTTCTAACGAAACAATCGATCTTATGCC----GCAGCGTTC--------GCCCAAATC------------------------------------------GCCAG------------------------CAGCAACGAA----------------ATCCACAACAATAACAGCAACGACCACAACCACGATTGGCAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..CGACGACGGTGACACGCC---ATGT------------GGGC............................................................................................................................................................................................................................................................................................................................................................................................2612.002001000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACGACCACAACCAC..........2111.001000000000000000000000000000100000000000000000000000000000000000
..CGACGACGGTGACACGCC---ATGT------------GGGCGT..........................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
..CGACGACGGTGACACGCC---ATGT------------GGG.............................................................................................................................................................................................................................................................................................................................................................................................2511.001000000010000000000000000000000000000000000000000000000000000000
.....CGACGGTGACACGCC---ATGT------------GGGCGT..........................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
...GACGACGGTGACACGCC---ATGT------------GGGC............................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000100000000000000000000000000000000000000000000000000
.......ACGGTGACACGCC---ATGT------------GGGC............................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................ATAACAGCAACGACCACAACCACGAT.......2611.001001000000000000000000000000000000000000000000000000000000000000
.....CGACGGTGACACGCC---ATGT------------GGGCGTGC--C.....................................................................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................ATAACAGCAACGACCACAACC............2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................GTAAAACACTCGTTACCAAGC---AG---------------------------------------CAG---CA.....................................................................................................................................................................................................................................................................2821.002001000000000000000000000000000000000000000000000000000000001000
........................................................................................GGTAAAACACTCGTTACCAAGC---AG---------------------------------------CA...........................................................................................................................................................................................................................................................................2620.501001000000000000000000000000000000000000000000000000000000000000
...................................................................ACCAAG---------AGCGTGGGTAAAACACT....................................................................................................................................................................................................................................................................................................................................2320.501001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................TG---AAGACCCGT------------------AACGTTCAAGGTC...................................................................................................................................................................................................2420.501000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................C------------------------------------------GCCAG------------------------CAGCAACGAA----------------ATCCACA....................................2320.501000000000000000000000000000000000000000000000000000000010000000
........................................GGCGTGC--CCAC-------------TACCAAG---------AGCGT................................................................................................................................................................................................................................................................................................................................................2320.501000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GCGTTC--------GCCCAAATC------------------------------------------GCCAG------------------------C....................................................................2120.501001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................CTTATGCC----GCAGCGTTC--------GCC..................................................................................................................................................2020.501001000000000000000000000000000000000000000000000000000000000000
.........................................GCGTGC--CCAC-------------TACCAAG---------AGCG.................................................................................................................................................................................................................................................................................................................................................2120.501000000000000100000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GCGTTC--------GCCCAAATC------------------------------------------GCC...............................................................................................1820.501001000000000000000000000000000000000000000000000000000000000000
...........................................................................................AAAACACTCGTTACCAAGC---A.....................................................................................................................................................................................................................................................................................................................2020.501001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TC--------GCCCAAATC------------------------------------------GCCAG------------------------CAGCA................................................................2120.501001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................GCCCAAATC------------------------------------------GCCAG------------------------CAGCAACG.............................................................2220.501001000000000000000000000000000000000000000000000000000000000000
...........................................................................................AAAACACTCGTTACCAAGC---AG---------------------------------------CAG---CAG....................................................................................................................................................................................................................................................................2720.501001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................GAAACAATCGATCTTATGCC----GCAGC.................................................................................................................................................................2520.501001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................CAAATC------------------------------------------GCCAG------------------------CAGCAACGA............................................................2020.501001000000000000000000000000000000000000000000000000000000000000
...................................................AC-------------TACCAAG---------AGCGTGGGT............................................................................................................................................................................................................................................................................................................................................1820.501000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................AGC---TGCTG-TG---AAGACCCGT------------------AA..............................................................................................................................................................................................................2120.501000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................CTTATGCC----GCAGCGTTC--------GCCCA................................................................................................................................................2220.501000000000000000000000100000000000000000000000000000000000000000
.......................ATGT------------GGGCGTGC--CCAC-------------TACCAAG---------AGCGTG...............................................................................................................................................................................................................................................................................................................................................2920.501000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GCGTTC--------GCCCAAATC------------------------------------------GCCAG------------------------CAGC.................................................................2420.501001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................GTTCAAGGTTCTAACGAAACAATCG....................................................................................................................................................................................2520.501000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................GCAACAAGC---TGCTG-TG---AAGACCCGT------------------AAC.............................................................................................................................................................................................................2820.501001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TGCC----GCAGCGTTC--------GCCCAA...............................................................................................................................................1920.501000000000000000000000010000000000000000000000000000000000000000
...........................................GTGC--CCAC-------------TACCAAG---------AGCGTGG..............................................................................................................................................................................................................................................................................................................................................2220.501000000000000010000000000000000000000000000000000000000000000000
...................C---ATGT------------GGGCGTGC--CCAC-------------TACCAAG---------AGC..................................................................................................................................................................................................................................................................................................................................................2720.501001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................GATCTTATGCC----GCAGCGTTC--------GCCCAAA..............................................................................................................................................2720.501000000000000000000000000000000000000000000000000000000000000001
...................................................................................GCGTGGGTAAAACACTCGT.................................................................................................................................................................................................................................................................................................................................1920.501000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................AACAAGC---TGCTG-TG---AAGACC.....................................................................................................................................................................................................................................2020.501000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................GCAACAAGC---TGCTG-TG---AAGACCCGT------------------................................................................................................................................................................................................................2520.501000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................TG---AAGACCCGT------------------AACGTTCAAGGTT...................................................................................................................................................................................................2420.501000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................C--------GCCCAAATC------------------------------------------GCCAG------------------------CAGCAACGA............................................................2420.501000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GTTC--------GCCCAAATC------------------------------------------GCCAG------------------------C....................................................................1920.501001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................CAATCGATCTTATGCC----GCAGC.................................................................................................................................................................2120.501000000010000000000000000000000000000000000000000000000000000000
....................................................C-------------TACCAAG---------AGCGTGGGTAAAACACT....................................................................................................................................................................................................................................................................................................................................2520.501000000000000000000000000000000000000000000000000000000000000100
..................................................................................................................G---------------------------------------CAG---CAGCAGCAACAAGC---TGC...................................................................................................................................................................................................................................................2140.251000100000000000000000000000000000000000000000000000000000000000
droMoj3
CTCCACCACGGTCACACGAC---ATGT------------GGGCGTGC--CC----------------------------AAGACCATTGCCAAGACAACCGTTAGCAAGC---AG---------------------------------CAGCAGCAG---CAGCAGCAGCAAAC---TGTTG-TC---AAGACACGC------------------AGCGTGCAGGGGTCGAATGAGACAATTGATCTAACGCC----GCAGCGTTT--------GCCCAAATC------------------------------------------GCCAA------------------------CAGCGAAATCAAC------AACAACA----ACAAC------GACCACGACAACAACAACGATTGGCAATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................CCACGACAACAACAACGATTGGC...2311.001100000
....................................................................................................................................................................................TG-TC---AAGACACGC------------------AGCGTGCAGGGG....................................................................................................................................................................................................2511.001100000
......................................................................................................................................................................................................................................................................................................................................................................GAAATCAAC------AACAACA----ACAAC------GACCAC......................2711.001100000
...............................................................................................................................................................................................ACACGC------------------AGCGTGCAGGGGT...................................................................................................................................................................................................1911.001000100
.....................................................................................................................................................................................G-TC---AAGACACGC------------------AGCGTGCAGGG.....................................................................................................................................................................................................2311.001100000
................................................................................................................................................................................................CACGC------------------AGCGTGCAGGGGT...................................................................................................................................................................................................1811.001100000
........................................................................................................................................................................................................................GCGTGCAGGGGTCGAATGAGACAATTG....................................................................................................................................................................................2711.001100000
.....................................................................................................................................................AGCAGCAG---CAGCAGCAGCAAAC---TGT...................................................................................................................................................................................................................................................2520.501100000
............................................................................................................................................................................................................................................................................................................................................................................AAC------AACAACA----ACAAC------GAC.........................18200.051000010
droGri2
CTCGACGACAGTGACACGTGGCCCTGT------------GGGCGTGC--CCGC-------------TGG---------CAAGAGTGTGGGTAAAACACACGTTACCAAGC---AG---------------------------------------CAA---CAGCAGCAGCAGAC---TGTTG-TG---AAGACCCGT------------------AACGTTCAAGGTTCTAACGAAACAATTGATCTTATGCC----GCAGCGTTC--------GCCCAAATC------------------------------------------GCCAG------------------------CAGCCGCAAC----------------AAAAACGACGACCACAACAACAACAACAACAACGATTGGCAATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................................................................................................................................................CC----GCAGCGTTC--------GCCCAAATC------------------------------------------G.................................................................................................2111.00110
............................................TGC--CCGC-------------TGG---------CAAGAGTGTGG..............................................................................................................................................................................................................................................................................................................................................2111.00101
...GACGACAGTGACACGTGGC.................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
.................................................................................................................................................................................................................................................................GCAGCGTTC--------GCCCAAATC------------------------------------------GCCAG------------------------C....................................................................2411.00110
...............................................................................................................................................................................................................................................ATTGATCTTATGCC----GCAGCGTTC--------GCC..................................................................................................................................................2611.00101
.............................................................................................................................................................................................................................................CAATTGATCTTATGCC----GCAGCGTTC--------GCCC.................................................................................................................................................2911.00110
droWil2
CTCGACGACGGTGACACGCC---ATGCCGCGCCAGC---CAGCCACG--TTACCAC----------CACCAGCACCACCAAAAGTGTGGGTAAAAACGTTGTTACCAAGC---AG---------------------------------------CAG---CAGCAGCATCACAC---TGTTG-TG---AAATCCCGT------------------AATGTGCAAGGTTCTAACGAAACAATTGATCTTATGCC----GCAGCGTTT--------GCAAAAATC------------------------------------------CCCGT------------------------CTCCGACGAGCGGAACGAC-------CAAAATAACGACCACTAAAACG----------------ACAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......GACGGTGACACGCC---ATGCC...........................................................................................................................................................................................................................................................................................................................................................................................................1912.00202000
....................................................................................................GTTACCAAGC---AG---------------------------------------CAG---CAGCA..................................................................................................................................................................................................................................................................2011.00100010
...................................................................................................................................................................................................GT------------------AATGTGCAAGGTTCTAACGAAACA........................................................................................................................................................................................2611.00100100
.....................................................................................................................................................................GCATCACAC---TGTTG-TG---AAATCCCGT------------------................................................................................................................................................................................................................2511.00101000
.................................................................................................................AG---------------------------------------CAG---CAGCAGCATCACAC---T.....................................................................................................................................................................................................................................................2011.00101000
............................................................................................................................................................................AC---TGTTG-TG---AAATCCCGT------------------AATGTGC.........................................................................................................................................................................................................2511.00100100
...................................................................................................................................................................................................................................................ATCTTATGCC----GCAGCGTTT--------GCAAA................................................................................................................................................2411.00100010
.........................................................................................................................................................................................................................................................................T--------GCAAAAATC------------------------------------------CCCGT------------------------CTCCGACGAGCGG........................................................2811.00100100
....................................................................................................GTTACCAAGC---AG---------------------------------------CAG---CAGCAGC................................................................................................................................................................................................................................................................2211.00101000
.......................................................................................................ACCAAGC---AG---------------------------------------CAG---CAGCAGCAT..............................................................................................................................................................................................................................................................2111.00100010
........................................................................................................CCAAGC---AG---------------------------------------CAG---CAGCAGCATCACAC---T.....................................................................................................................................................................................................................................................2611.00100010
.........................................................................................................................................................................................................................................................................T--------GCAAAAATC------------------------------------------CCCGT------------------------CTCCGACGA............................................................2411.00110000
.....................................................................................................................................................................................................................................................CTTATGCC----GCAGCGTTT--------GCA..................................................................................................................................................2011.00100100
...........................................................................................AAAAACGTTGTTACCAAGC---AG---------------------------------------CAG---CA.....................................................................................................................................................................................................................................................................2611.00100100
.................................................................................................................................................................................................................................................TGATCTTATGCC----GCAGCGTTT--------GCAA.................................................................................................................................................2511.00101000
........................................................................................................................................................................................................................................................................................................................................GT------------------------CTCCGACGAGCGGAACGAC-------...........................................2111.00100010
..................CC---ATGCCGCGCCAGC---CAGC............................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..CGACGACGGTGACACGCC---................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
..................................................................................................................................................................................GTTG-TG---AAATCCCGT------------------AATGTGCAAGG.....................................................................................................................................................................................................2611.00101000
dp5
CACCACAACGGTGACAAGGC---AGACGGC---------G---GGTGGATCAGCACCAGCCACTCC------------CAAGACTGTGGCCAAAACGC---------------CGCCGCCGCAGCAACAGGTGGTTAA------------------------GCAGCAGCAGGT---TACTA-CC---AAGACGATC---------------------------------------------------------------------AGCAACGAACCCAAGTC------------------------------------------GCCCA------------------------CTCAAAAGGCGGCAACGAC-------CACTGTAACGACCACGACAACCAGCACCACCAAGACAGGTGGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................GTAACGACCACGACAACCAGCAC................2315.0050410000000
.............ACAAGGC---AGACGGC---------G---GGT.........................................................................................................................................................................................................................................................................................................................................................................................1813.0030300000000
.ACCACAACGGTGACAAGGC---AGACGGC---------G---GG..........................................................................................................................................................................................................................................................................................................................................................................................2911.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................................................CGACCACGACAACCAGCAC................1911.0010100000000
..........................................................................................................................AGCAACAGGTGGTTAA------------------------GC...................................................................................................................................................................................................................................................................1811.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GACCACGACAACCAGCACCAC.............2111.0010010000000
...................................................AGCACCAGCCACTCC------------CAAGAC...................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................AACAGGTGGTTAA------------------------GCAGCAGCAGGT---......................................................................................................................................................................................................................................................2511.0010100000000
............GACAAGGC---AGACGGC---------G---GGT.........................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................GAC-------CACTGTAACGACCACGAC.........................2111.0010100000000
......AACGGTGACAAGGC---AGACG...........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................ACGAC-------CACTGTAACGACCAC............................2011.0010100000000
...................................................................................................................................................................CAGCAGCAGGT---TACTA-CC---AAG........................................................................................................................................................................................................................................2111.0010010000000
.............................................................................................................................................................................................................................................................................................................................................................................................ACTGTAACGACCACGACAACCAGCACC...............2711.0010001000000
............GACAAGGC---AGACGGC---------G---GGTG........................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................ACTA-CC---AAGACGATC---------------------------------------------------------------------AGCAACGA.....................................................................................................................................................2311.0010100000000
............GACAAGGC---AGACGGC---------G---GGTGG.......................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................CCA------------------------CTCAAAAGGCGGCAAC.....................................................1911.0010010000000
...................C---AGACGGC---------G---GGTGGATCAGCACCAGC...........................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
......................................................................................................................................................................................................................................................................................................................................CCCA------------------------CTCAAAAGGCGGCAACGAC-------CACT.......................................2711.0010100000000
.....................................................................................................................................................................................A-CC---AAGACGATC---------------------------------------------------------------------AGCAACGAACC..................................................................................................................................................2311.0010100000000
.....................................................................................................................................................................................A-CC---AAGACGATC---------------------------------------------------------------------AGCAACGAACCCAA...............................................................................................................................................2611.0010100000000
...................................................................................................................................................................................CTA-CC---AAGACGATC---------------------------------------------------------------------AGCAACGAACC..................................................................................................................................................2511.0010100000000
..CCACAACGGTGACAAGGC---AG..............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000000
droPer2
CACCACAACGGTGACAAGGC---AGACGGC---------G---GGTGGATCAGCACCAGCCACTCC------------CAAGACTGTGGCCAAAACGC---------------CGCCGCCGCAGCAACAGGTGGTTAA------------------------GCAGCAGCAGGT---TACTA-CC---AAGACGATC---------------------------------------------------------------------AGCAACGAACCCAAGTC------------------------------------------GCCCA------------------------CTCAAAAGGCGGCAACGAC-------CACTGTAACGACCACGACAACCAGCACCACCAAGACAGGTGGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................ACTCC------------CAAGACTGTGGCC............................................................................................................................................................................................................................................................................................................................................1813.003300000
....................................................................................................................................................................................................................................................................................................................................................................................C-------CACTGTAACGACCACGACAACCAGCACC...............2912.002200000
............................................................................................................................................................................................................................................................................................................................................................................................CACTGTAACGACCACGACA........................1911.001100000
............GACAAGGC---AGACGGC---------G---GGTG........................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...........TGACAAGGC---AGACGGC---------G---GGTGG.......................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
droAna3
AGCTGCAGCAGCAGCAACTG---CAG--GT------TAGTAGTAGCA--ATA---------------------------------------------------------------------------------ATTATGCAGCAACACTGCTCGATG---CAGCAGCT---TTC---TG----CT---ATGAGACCC---------------------------------------------------------------------ACTACATGATGGAGGCC------------------------------------------ACCCA------------------------CTATAGCAGCAGC------AGCAACT----ACA-------------------------------ACAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................GGAGGCC------------------------------------------ACCCA------------------------CTATAGCAGCAGC------..................................................2511.001100000
.................................................................................................................................................................................................................................................................................GATGGAGGCC------------------------------------------ACCCA------------------------CTATAGCAGC...........................................................2511.001100000
..........GCAGCAACTG---CAG--GT------TAGTAGTAGCA--......................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
....................................................................................................................................................................................................................................................................................................................................................................ATAGCAGCAGC------AGCAACT----ACA-------------------------------ACAAT2611.001010000
droBip1
CTCCACCACGGTGACCAGGC---ACTC------------GGGCGGGA--ACTC-------------TACCACCACCA-----------------------------------------CCACAA-----------------------CCACCAAGAA---TAGAACCACCAAGCCACCA---GTT---CGAGGTCCC------------------------------------------------------------------------AGCGAGCCGCGGTC------------------------------------------CCCAA------------------------CACCGAAGACGGG------AGGAACC----GTGAC---------CTCCACCACGA--------------SizeHit CountTotal NormTotal
No Reads
droKik1
CTCTAGCACGGTGACCAGGC---ATACGAC---------AGGAGGAA--CCAC-------------TACTAGCACCA----------------------------------------------------------------------CCACAAAGACGAGCAAGAAGCCAAGTCCAGTG---GTGAGCCGAGGTCCC------------------------------------------------------------------------AGCGAGCCCAGGTCGCCAACACCGAAGGCGGGAGGACGTCACAGCGAGCCAAGATCGCCCA------------------------CACCAAAGGCAGGAGGAGC-------TACAGTGACAACCACAACGACTACGACCACAAGCAGTACCATTSizeHit CountTotal NormTotal
No Reads
droFic1
CTCGACAACCGTGACCCGGC---ACAC------------TGGTGGCA--CCAC-------------CACCAGCAGCA----------------------------------------------------------------------CCACCAAGAC---CAAGACCACCAAGC---CG---GTG---CGGGGTCCC------------------------------------------------------------------------AGCGAGCCGAGGTC------------------------------------------GCCCA------------------------CCCCGAAAACAGG------AGGAAGT----GTGAC---------CACTACCACGACCCACG------TTSizeHit CountTotal NormTotal
No Reads
droEle1
CTCGACCACTGTGACCAGAC---ATAC------------GGGTGGCA--CCAC-------------CAGCAGCAGCA--------------------------------------------GCA-----------------------CCACCAAGAC---CAAGACCACCAGGC---CG---GTG---AAGAGTCCC------------------------------------------------------------------------AGTGAGCCGAGGTC------------------------------------------GCCCA------------------------CGCCGAAAACAGG------AGGAAAT----GTGAT---------CACTACCACGACCACAACCACTA--SizeHit CountTotal NormTotal
No Reads
droRho1
CTCAACCACTGTGACCAGAC---ACAC------------GGGTGGCC--ACAC-------------CACCAGCAGCA----------------------------------------------------------------------CCACCAAGAC---CAAGACCACCAGGC---CG---GTG---AAGAGTCCC------------------------------------------------------------------------AGCGAGCCGAGGTC------------------------------------------GCCCA------------------------CACCGAAAGCAGG------AGGAAAT----GTGAT---------TACCACCACGACCACAACCACAA--SizeHit CountTotal NormTotal
No Reads
droBia1
CCCAACAGCAGCAGCAACGC---CAAC------------TGGCCGC----C----------------------------GCCGCCGTGGCCACAGCAGCAGTCGCCCAAC---AG---------------------------------CAGCAGCAG---CAGCAGCAGCAAGC---TGTTG-TC--CAGCAGCAAC---------------------------------------------------------------------AGCAGCAGGTTGTTGCC-----------------------------GCCGC---------CCAG------------------------CAGCAGCACC----------------ACCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAA--------SizeHit CountTotal NormTotal
No Reads
droTak1
CTCGACCACTGTGACCAGGC---ATCAGAC---------AGGTGGCA--GCAC-------------CACCAG---CA----------------------------------------------------------------------CCACCAAGAC---CAAGACCACCAAGCCACCG---GTGTCCAGAGGTCCC---------------------------------------------------------------------AGTAGTGAGCCCAGGTC------------------------------------------GCCCA------------------------CCCCAAAAACAGCGGG---AGGAGGA----GTAAT---------AACCACCACGACCACTATTAGCAGCSizeHit CountTotal NormTotal
No Reads
droEug1
CTCGACCACTGTGACTAGGC---ATAC------------AGGTGGCA--CTAC-------------CACCACCAGCA----------------------------------------------------------------------CTACCAAGAC---CAAGACCAGCAAGC---CG---GTT---AAGAGTCCC------------------------------------------------------------------------AGCGAGCCAAGGTC------------------------------------------CCCAA------------------------CCCCGAAATCAGG------AGGAAAT----GTTAT---------TACCACTACGACTACCATTAGCAGCSizeHit CountTotal NormTotal
No Reads
dm3
CA--ACAGCTGCAACACAAC--AACAC------------GAGCAGCA--GC---AACAGCAATTGC------------CACCACAGT---------------CACCA-ACAGCAG---------------------------------CAGCAGCAG---CAGCAGCAGCAACA---CA----TG---A--GCTCCCCGCAACAACAATACCAACAACACCAAATA--------------------TTACACCAACAACAACAATT--------GCC-AAATC------------------------------------------ACCACCATCATCACCATCACCACCACCACCATCACAGTCAGCTACAAC-------AACTCCAACAACAACAGCAACAACAACAACAA-CAGCAGCAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................ACAC------------GAGCAGCA--GC---AACAGCAAT........................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................TGC------------CACCACAGT---------------CACCA-ACA........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................ACCACCACCACCATCACAGTC...........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................T---------------CACCA-ACAGCAG---------------------------------CAGCAGCAG---CAGG...................................................................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAA-CAGCAGC...20200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................T---------------CACCA-ACAGCAG---------------------------------CAGCAGCAG---CAGT...................................................................................................................................................................................................................................................................2660.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................AG---------------------------------CAGCAGCAG---CAGCAGCAGCAAC..........................................................................................................................................................................................................................................................24200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAACAA-CA........18200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................CAGCAG---------------------------------CAGCAGCAG---CAGCAG.................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................CACCA-ACAGCAG---------------------------------CAGCAGCA...........................................................................................................................................................................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000001000000000100000000000000000000000000000
............................................................................................................ACAGCAG---------------------------------CAGCAGCAG---CAGCA..................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................CACCA-ACAGCAG---------------------------------CAGCAGC............................................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAACAACAACAAC.............24160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................CAG---------------------------------CAGCAGCAG---CAGCAGCAGCA............................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................GCAG---------------------------------CAGCAGCAG---CAGCAGCA...............................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................ATCATCACCATCACCACCA.........................................................................19100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAACAAC...................18200.1020000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................GCAG---CAGCAGCAGCAACA---......................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAA-CAGCAG....21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................ACCA-ACAGCAG---------------------------------CAGCAGCA...........................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000
..........................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAACAACAA-CAGCAGCA..26130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAACAACAACAACA............25130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAA-CAGCAGCAAC24130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAACAACAACAACAA-C.........23150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................CACCA-ACAGCAG---------------------------------CAGCAGCAG---CAGCA..................................................................................................................................................................................................................................................................26160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................CACCA-ACAGCAG---------------------------------CAGCAGCAG---CAG....................................................................................................................................................................................................................................................................24170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................CCA-ACAGCAG---------------------------------CAGCAGCAG---CAGCAGC................................................................................................................................................................................................................................................................26190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
........................................................................................................CCA-ACAGCAG---------------------------------CAGCAGCAG---C......................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................A-ACAGCAG---------------------------------CAGCAGCAG---CA.....................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAACAACAACAA-CA........21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................CA-ACAGCAG---------------------------------CAGCAGCAG---.......................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................A-ACAGCAG---------------------------------CAGCAGCAG---CAGC...................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................A-ACAGCAG---------------------------------CAGCAGCAG---CAGCA..................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................CAGCAG---CAGCAGCAGCAA...........................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................CAG---------------------------------CAGCAGCAG---CAGCAGC................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................AG---------------------------------CAGCAGCAG---CAGCAGCAG..............................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAA-CAGCAGCAA.21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................G---------------------------------CAGCAGCAG---CAGCAGCAGCA............................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAA-CAGCAGCAA.19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................CAGCAG---------------------------------CAGCAGCAG---CAGCAGCAG..............................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................ACAGCAG---------------------------------CAGCAGCAG---CAGC...................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAA-CAGCAGCAAC20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAA-CAGCAGCA..18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAACAACAAC................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAA-CAGCA.....20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAACAACAACAA-..........21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAACAACAACA............18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAA-CAGCAG....20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................................................................................................ACAGCAG---------------------------------CAGCAGCAG---CAGCAGCAGCA............................................................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
............................................................................................................ACAGCAG---------------------------------CAGCAGCAG---CAGCAGC................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................CA-ACAGCAG---------------------------------CAGCAGCAG---C......................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................CACCA-ACAGCAG---------------------------------CAGCAGCAG---.......................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................CCA-ACAGCAG---------------------------------CAGCAGCAG---CA.....................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..............................................................................................................AGCAG---------------------------------CAGCAGCAG---CAGCAGCAGCA............................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAA-CAGCAGCA..20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................CAGCAGCAG---CAGCAGCAGCAAC..........................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAACAACAACAA-CA........23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGCAACAACAACA...............21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAACAACAACA...............22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................G---------------------------------CAGCAGCAG---CAGCAGCAGCAACA---......................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAACAA-CAGCA.....21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAACAACAACAA-..........19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................AG---------------------------------CAGCAGCAG---CAGCAGCA...............................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................CA-ACAGCAG---------------------------------CAGCAGCAG---CAGCA..................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CTCGACCACTGTGACTAGGC---ACACCAC---------CGGTGGCA--ATGT-------------CACTAGCAACA----------------------------------------------------------------------CCATCAAGAC---CAAGACCACCAAGC---CG---GTG---AAAACTCCC------------------------------------------------------------------------AGCGAGCCAAGGTC------------------------------------------GCCCA------------------------CCCCAAGGGCAGG------AGGAAGT----GTGAC---------CACCACCACGACCACCATTACCACCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................CAAGGTC------------------------------------------GCCCA------------------------CCCCAAGG.............................................................2012.00200010000000100000
.TCGACCACTGTGACTG......................................................................................................................................................................................................................................................................................................................................................................................................................1640.25100000001000000000
droSec2
CTCGACCACAGTGACTAGGC---ACACCAC---------CGGTGGCA--ATGT-------------CACTAGCAACA----------------------------------------------------------------------CCATCAAGAC---CAAGACCACCAAGC---CG---GTG---AAAACTCCC------------------------------------------------------------------------AGCGAGCCAAGGTC------------------------------------------GCCCA------------------------CCCCAAAGGCAGG------AGGAAGT----GTGAC---------CACCACCACGACCACCATTACCACCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................C---CAAGACCACCAAGC---CG---GT...............................................................................................................................................................................................................................................1911.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................CACCACCACGACCACCATTACCA..2311.0010010
.......................................................................................................................................................................................................................................................................................................................................................................AAGGCAGG------AGGAAGT----GTGAC---------CACCACC..................2711.0010100
.........................................................................................................................................................................................................................................................................................................................................................................GGCAGG------AGGAAGT----GTGAC---------CACCACC..................2511.0010010
droYak3
CTCGACCACTGTGACCAGGC---ACAC------------AGGTGGCA--ATGT-------------CACCAGCAGCA----------------------------------------------------------------------CCATCAAGAC---CAAGACCACCAAGC---CG---GTG---AAAACTCCC------------------------------------------------------------------------AGCGAGCCCAGGTC------------------------------------------GCCCA------------------------CCCCAAAAGCAGG------AGGAAGT----GTGAC---------CACCACCACGACCACCATTAGCAGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............CAGGC---ACAC------------AGGTGGCA--AT....................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000
..................................................................CACCAGCAGCA----------------------------------------------------------------------CCATCAAGAC---CAA....................................................................................................................................................................................................................................................................2411.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................CCCCAAAAGCAGG------AGGAAGT----GTGAC---------.........................2511.00101000000000
...GACCACTGTGACCAGGC---ACAC------------AGGC............................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
.......................................................................................................................................................................................TG---AAAACTCCC------------------------------------------------------------------------AGCGAGCCCAGGTC------------------------------------------..................................................................................................2511.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................AC---------CACCACCACGACCACCATTAGC...2411.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................AAAAGCAGG------AGGAAGT----GTGAC---------CACC.....................2511.00100000010000
...........................................................................CA----------------------------------------------------------------------CCATCAAGAC---CAAGACCACCAAGC---CG---.................................................................................................................................................................................................................................................2811.00101000000000
........................................................................................................................................................................................................................................................................................................................................CA------------------------CCCCAAAAGCAGG------AGGAAGT----GTGAC---------.........................2711.00101000000000
..........................................................................................................................................................GAC---CAAGACCACCAAGC---C.....................................................................................................................................................................................................................................................1811.00100000100000
droEre2
CTCGACCACTGTGACCAGGC---ACAC------------AGGTGGCA--ATGT-------------CACCAACAGCA----------------------------------------------------------------------CCATTAAGAC---CAAGACCACCAAGC---CG---GTG---AAAACTCCC------------------------------------------------------------------------AGCGAGCCAAGGTC------------------------------------------GCCCA------------------------CCCCAAAAGCAGG------AGGAAGT----GTGAC---------CACCACCACGACCACCATTAGCAGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................GC---CG---GTG---AAAACTCCC------------------------------------------------------------------------AGCGAGCCAAGGT.............................................................................................................................................2919.0090000009
...............................................................................................................................................................................................ACTCCC------------------------------------------------------------------------AGCGAGCCAAGGTC------------------------------------------GCCCA------------------------CC...................................................................2711.0011000000
............................................................................................................................................................................................AAAACTCCC------------------------------------------------------------------------AGCGAGCCAAGGT.............................................................................................................................................2211.0011000000
...GACCACTGTGACCAGGC---ACAC------------AGGT............................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.........................................GTGGCA--ATGT-------------CACCAACAGCA----------------------------------------------------------------------C...................................................................................................................................................................................................................................................................................2211.0011000000
..................................................................................................................................................................................G---GTG---AAAACTCCC------------------------------------------------------------------------AGCGAGCCAAGGT.............................................................................................................................................2611.0011000000

Generated: 05/16/2015 at 09:52 PM