dvi_826

CDS [Dvir\GJ15109-cds]; CDS [Dvir\GJ15109-cds]; exon [dvir_GLEANR_15409:1]; exon [dvir_GLEANR_15409:2]; intron [Dvir\GJ15109-in]

Name	Class	Family	Strand
(ATG)n	Simple_repeat	Simple_repeat	+

Species	Coordinate	ID	Alignment
droVir3	scaffold_10324:935013-935244 +	dvi_826	ATTGCCTGC---------------------------------TCTATGCTGCCCGCATAATTGCCA---------------------------------------------------------ATGACAAT--G----------------------------------------------------------ATGATGATGT------TGCTGATGATGATGTTGCTGATG---ATGAT---------GATGATGATGATGAGGGGAATGCGTATGTGAG--------------------------------------------TGCTGGCC------------------ATG-------------------------------------------------ACCATGA------C-----------------------------------------------GTCAA---TACACAAATACAAACAC------------------------------------------ATTTACGCAATACGCAAGCCGGCAACAAGC--------------------------------------------------------------------------------------------------------------A------------CGACAACATTG--------------------------------------------------------ACGCT--------------------------AAT------GACGAG-------------------------G-TGTC-----------AACGG---------CACGTGAACGACA
droMoj3	scaffold_6496:2807833-2808022 +		ATTGCCTGC---------------------------------GCTATGCTCGACGCATAATTGTTG---------------------------------------------------------ATCATGAT------------------------------------------------------------GATGATCGTGT------TGGTCGTGATGATGTTGCT--------------------------------------------------------------------------------------------------GCTGGCC------------------ATG-------------------------------------------------ACCGTGA------C-----------------------------------------------GTCAA---TACACATATACTAGCAC------------------------------------------ATGCACGCAATACGCACGCCGGCAACAACA--------------------------------------------------------------------------------------------------------------A------------CGACATCATTG--------------------------------------------------------ACGCT--------------------------AAT------GATGAG-------------------------G-TGTC-----------AACGG---------CACGTGAACAACA
droGri2	scaffold_15245:8616628-8616892 +		ATTGCCTGC---------------------------------GTTATGCTGGCCGCATAATTGCCA---------------------------------------------------------AAGCCAAT--G----------------------------------------------------------ATGATGATGA------TG---------------------------------------ATGATGACGATGATGGGAATGCGTATGTGAA--------------------------------------------TGCTGTCC------------------ATG-------------------------------------------------ACCATGA------CGTCAATGTGG--CCGCAGTGA--------------------GACAATC----------CCAAATACAACCACACTCACACTCAGATTCACACTCGCACTCGCACTCACATTCATATTCACGCACTACGCACGCCGGCAACGACA--------------------------------------------------------------------------------------------------------------A------------CGACAACATTG--------------------------------------------------------ACGCT--------------------------AAT------GACGAG-------------------------G-TGTC-----------ATCGG---------CACGTGAACAACA
droWil2	scf2_1100000004830:291923-292161 -		TGTGCCTG-ATAT---------------------------------TGCTGCTGCTGCTGCTGTTG---------------------------------------------------------CTCCCAAT------------------------------------------------------------GACAATTATGAGAATGATA------ATAATGATG---------ATG---------ATGACGATG------------GG------------------------------------------------GACAACA--------------------------------ACC--------AAA--------------------------------AGA---AC-----------------------------------------------------------------------------------------------------------------------------------------AATAT--------GGAT------GACAA----CAACTCGTCGTCGGAACAACAGCCCGATATTATACCATATCCACTTAGTGTGGGTGAAACAAGCTGGAAACCCGCAA-AACTACAGC---AACAGCAATGGCAACAGCAACA---------------------------------------------------TCA------------------------------------------------------------------------------------T----------------------CACGAAAATGACA
dp5	XR_group6:3859602-3859793 -		ATTGCTGCT--G------------------------------------CTGCTGGTGTTGTTGTTG---------------------------------------------------------TTGTTGCT------------------------------------------------------------GGTGGTGGTGT------TGCTGATGTTGTTGCTGCTGCTG---CTGCTGCTGATG---------ATGATGA------------------------------------TGGT-------------G--------------------------------------------------------------------------------------------------GTGCTGCTGATG--CTGCGGCGAA-------------------GACTGTCCGGA---CATGGGTAT---------------------------------------------------------------------------AGGCA---------------------------------------------------------------------------------------------------------------------------------------------------------GCGGCGAGCTGGGG-----CATCC-----------------T--------------------------AAT------GGCGAG-------------------------GGTATTGGCGAGGCGACAAT----------------------GG
droPer2	scaffold_9:2150861-2151055 -		ATTGCTGCT--G-------------------------------C--TGCTGCTGGTGTTGTTGTTG---------------------------------------------------------TTGCTGCT------------------------------------------------------------GGTGGTGGTGT------TGCTGATGTTGTTGCTGCTGCTG---CTGCTGCTGATG---------ATGATGA------------------------------------TGGT-------------G--------------------------------------------------------------------------------------------------GTGCTGCTGATG--CTGCGGCGAA-------------------GACTGTCCCGA---CATGGGTAT---------------------------------------------------------------------------AGGCA---------------------------------------------------------------------------------------------------------------------------------------------------------GCGGCGAGCTGGGG-----CATCC-----------------T--------------------------AAT------GGCGAG-------------------------GGTATTGGCGAGGCGACAAT----------------------GG
droAna3	scaffold_12088:3486-3685 -		TGACGATG-ACGA---------------------------------------------------------------------------------------------------------------------T--GA----------------CGATGACGATGACGATGACGATGACGATGACGATGACGATGACGATGACG------------------------------------------------ATGAC---------------------GATGA--------------------------------------------CGATGACGATGA------CGATGGCGATGACG-----------ATG-----------------------ACG------ATGACGA------TGACGATG--------------------------------------------------ACGATG-A-----------------------------------------------------------------CGATGA--------CGAT------GACGA------------------------------------------------------------------------------------------T------------------------------------GACG-------ATGACGATGACGAT-----GACGA-----------------T--------------------------GAC------GATGAC-------------------------GATGACGATGA----------------------CGATGACGATG
droBip1	scf7180000396022:3474-3711 -		TCGCAGCA-GCAG-----------------------------------CAGCA-------------------------------------------------------------------------------------------GCA-------------------------TGAAGACGATGATGAAGACGATTACGATGA------TG------------------------ATG---------AAGAGGATG------------AGGAA---GATGAGGATCATCATCAGGATCAGG-------------GTAATGGACAC--------------------------------GAT--------CTA-----------------------ACG------------C-------------------------CCAC-------------AGATCTGCGGCACATGA-----TACACG-A------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGCAGCAGCAGCAAC---AGTCGCAG-----------------------------------------------------------------------------CAGCAGCAGCAGCAACAGGATCCCATCGACTACGAGGACGAG--GACGAC-----------------GCCGACGACGA----------------------CGAGGACGATG
droKik1	scf7180000302472:3238233-3238440 +		TGTGGATG-CTG-----------------------------------------------------------------------------------------------------------------------ATGT------TACTG----------------------------------------------ATGCCTCTGC------TGCTGC---------------TA---CTGCTGCTGACGATGATGATG---------------------------------------------ATGATGATGCGAC-----------TGCTGAAA------------------------GCT--------CCC-----------------------ATG------------A-------------------------CATTGAGCTGCG-----------------GT-GCCAAGCGACGACT-------------------------------------------------------------------------------------------ACAATGAGCAATTT----------------------------------------------------------------TTCGTA--GCTTCCAAGCTTGTTAACAGGCGCAATGACAACG---------------------------------------------------TCAGACAGATGAT--------------------------GAT------GACGAC-------------------------G-------TTGCA-----------------------CGTCAACG
droFic1	scf7180000453549:133520-133745 +		AGTGCGTCC---------------------------------ATTATGTGAGCGA---GCTTAATTTGAATACGATTTTTGGTCTTCTCTACTTGCAGCTAAAGGCCA-------------------------------------------------------------------------------------------------------------------ATCGAATG---CTGTGGGAGAAT---------AAGGCCA------------------------------------AGCA-------------A--------------------------------------------------------------------------------------------------GTGCTGCAGATGTCCAGCGAGGAT-------------------GACAACCTCAA---CACGATTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC---A-------------------------------------------ATAGCAA----------------------------------CAATAAGGATAACAAC-----------AAT---AAT--CAGTACACAATCAATAAAATTAT-------ACCAGAACAA----------------------CGCGGCAGACA
droEle1	scf7180000490214:547459-547688 -		ACAACAACA---------------------------------GCAATACTAGCAGCAACATTAGCA---------------------------------------------------------GCAACTCT------------------------------------------------------------GGCGACAACAC------AGC----------------------------------------------------------------------------AACGGAAGTGGCC-------------ACGAAATGTGA--------------------------------GTACGCGCAACTCGAGCGTGAGAGGCAGAGCGTGAGCGCAGGCGCA-TA---C--------CTG----CAACCACCCAATGT-------------------GAC-----AAT------CAGCA-G-----------------------------------------------------------------CACCAGCAGCAGC--------------------------------------------------------------------------------------------------AGCAACAAC---AA------------CAACAA-----------------------------------------------------------------C--------------------------AAT------AACGGG-------------------------AGCAAC-----------AACAAGGGGAGCAGCGCCTGCTCAATA
droRho1	scf7180000766551:36405-36589 +		TACAAATG-ATG-----------------------------------------------------------------------------------------------------------------------ACGA------TGAAGA-------------------------TGTAGATGAAGATGAAGATGACGATAATG------------------------------------------------CAGATG------------AAGATAAT---------------------------GAGGATG--------------------------C------AACTGGGGAAGAAA-----------ATG-----------------------GTG------ACGAAGA------CGAGAACG--------------------------------------------------AAGAAG-A-----------------------------------------------------------------CGAAAA--------CGAC------GATGA------------------------------------------------------------------------------------------C------------------------------------GAGA-------ACGACGATGACGAG-----AACGA-----------------C--------------------------GAT------GACGAG-------------------------AACGACGATGA----------------------CGAGAACGACG
droBia1	scf7180000302113:3803943-3804184 +		GGAAGTCG-ATT---------------------CCA------------CGAGGCGCGTATTAGTCG---------------------------------------------------------ATG-----ATGC------T-------------CATTATGAGGATGCC------------------------------GC---------------------TGCCGCTGACGACG---------ATGACGATG------------AC---------------------------------GTTG-------CGCGGCCGCCG--------------------------------GTT--------ATA--------------------------------GAA---ATAGAAA---------------------------AGCG-----------------GCAGC---CAAAT----A-------------------------------------------------------------------------------CATCAACAACGAAAACGGAAAAA------------------------------------------------------------------TCAACAGTGGCAATAGCAGCAGCAGCAGCAGCAACAGCAACA---------------------------------------------------TCGT-----CTT-----------------------------T---GGG--AGACGCGTCATCGCCAGTGTTGTCCCTGT-----------------------------------CATCCGAAA
droTak1	scf7180000415381:755652-755894 +		ATGATATG-GAG------------------------------------CTGGATGCACAGCAAGAA--------------------------------------ACCAGAACTGAGCCAAGTGCAA-----CAAC------G-------------CAACAGCAGGATCTT------------------------------GC---------------------CGATCTTGAGGAGC------------AGAACAAGGATGCGGGGGAGGCTAGTTTAAA--------------------------------------------TGTTAGCAATAATCACACAACCGATAGCAATA----------------------------------------------ATAGTTG------TAGTCGAA--------------------------------------------------A------------------------------------------------------------------------------------G--------------------------------------------------------------------------------------------------------------AA------------CAACAATGGTGGCGGCAATGAGAGTGAGCAACATGTT------------GCCAA-----------------T--------------------------TCG------GCGGAG-------------------------GACGATGATTG----------------------CGCCAACAACA
droEug1	scf7180000409711:2042976-2043205 -		ACCGGCAAC-ACTTGTTGCTGCCGGTGTTGTTGCTCCGGGGAATGTTGCTGCTGGCACCGTTGACA---------------------------------------------------------CGGACA--ACGCTGACGATGACG-AATATGATGAGGACGAC------------------------------------GA---------------GGACGATGATGATGATGATA---------TTGATGATG------------GA------------------------------------------------G-------------------------------------------------TCG-----------------------ATG------AAATTGG------T-----------------------------------------------GAAAT---TGCAGGTA-T-----------------------------------------------------------------CGCCGGTGAC--------------GACGACGAGGAGG------------------------------------------------------------------CCGACGATGA-----------------------------------------------------------------------------------------------T--------------------------GAT------GACGAT-------------------------GACGACGATGA----------------------CATTATCGGCG
dm3	chr3R:13608769-13608995 -		GGAAGTCG-ATT---------------------CGA------------CGAGGCGCGTATTAGTCG---------------------------------------------------------ATGCTCAT--T----------------------------------------------------------ATGAGGATGC------CG------------------------CTGAC---------------------------------------------GACGACGATGACGTTG-------------TGCGGCCGCCG--------------------------------GTT--------ATA--------------------------------GAA---ATAGAAA---------------------------AGCG-----------------GCAGC---CAAAT----A-------------------------------------------------------------------------------CATCAACAACGAAAACGGAAAAA------------------------------------------------------------------TCAACAGAGGCAGCAACAGTAGCAGCAGCAGCAGCAGCAACA---------------------------------------------------TCAG-------------------------------------T---GGG--AGACGCGTCATCGCCAGTGTTGTCCCTGT-----------------------------------CATCTGAAA
droSim2	x:12068153-12068329 +		ATGAA-TG-ATG-----------------------------------------------------------------------------------------------------------------------ACGA------TAACG----------------------------------------------ATGACGATGA------CGATGATAATGATGATGATGATG---ACAAT---------------------------------------------TACAACCGTGATGATG-------------GCGAATCATCG--------------------------------GAT--------TGA-----------------------ACG------------A-------------------------CATT-------------------AGCTTGGCCAA---CAAACAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAACAAATTGACCAAGCCGGCAGCACCAACATCAG----------------------------------------------------------------------------ATATTAATTACACGTCAAC----------------------GG
droSec2	scaffold_21:464171-464347 +		ATGAA-TG-ATG-----------------------------------------------------------------------------------------------------------------------ACGA------TAACG----------------------------------------------ATGACGATGT------CGATGATAATGATGATGATGATG---ACAAT---------------------------------------------TACAACCGTGATGATG-------------GCGAATCATCG--------------------------------GAT--------TGA-----------------------ACG------------A-------------------------CATT-------------------AGCTTGGCCAA---CAAACAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAACAAATTGACCAAGCCGGCAGCACCAACATCAG----------------------------------------------------------------------------ATATTAATTACACGTCAAC----------------------GG
droYak3	X:20462015-20462197 -		TGGCGATG-GCC---------------------------------------------------------------------------------------------------------------------AT--GA----------------TGATGACGATGAT------------------------------------GA---------------TGACGATGATGATGACGATG---------ATGACGACG------------AT---------------------------------GATGATG-----TGATTCATGT--------------------------------GAT--------TCA----------------------------------T---GCGGAAA---------------------------ACAAGCAACAATTTTGGTTCACCAGA-----CAGACA-A-----------------------------------------------------------------CGCCGGC--------------------------------------------------------------------------------------------------------ACCAACAAC---AAAGGCAG-----------------------------------------------------------------------------C--------------------------AAT------AACAAG-------------------------AATATC-----------AGAAG---------GGGATAAACAACA
droEre2	scaffold_4690:17812978-17813168 -		CACTGGCA-ACGA---------------------AA-----------ACTGG------------------------------------------------------------------------CC-----ATGA------TG-------------------------------------------------ACGATGACGA------TGGCGA---------TGATGATGATGAGG---------ATGCGGATG------------AGGATGAT---------------GAGGATGCAA-------------GTGAT-------------------------------------------------TCA----------------------------------T---GCGGAAA---------------------------ACAAGCAACAATTTTGGTTTACCAGA-----CAGACA-A-----------------------------------------------------------------CGCCGGC--------------------------------------------------------------------------------------------------------ACCAACAAC---AAAGGCAA-----------------------------------------------------------------------------C--------------------------AAT------AACAAG-------------------------AATATC-----------AGAAG---------GGGATAAACAACA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

ATTGCCTGC---------------------------------TCTATGCTGCCCGCATAATTGCCA---------------------------------------------------------ATGACAAT--G----------------------------------------------------------ATGATGATGT------TGCTGATGATGATGTTGCTGATG---ATGAT---------GATGATGATGATGAGGGGAATGCGTATGTGAG--------------------------------------------TGCTGGCC------------------ATG-------------------------------------------------ACCATGA------C-----------------------------------------------GTCAA---TACACAAATACAAACAC------------------------------------------ATTTACGCAATACGCAAGCCGGCAACAAGC--------------------------------------------------------------------------------------------------------------A------------CGACAACATTG--------------------------------------------------------ACGCT--------------------------AAT------GACGAG-------------------------G-TGTC-----------AACGG---------CACGTGAACGACA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................................................................................................................................TG---ATGAT---------GATGATGATGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	1.40	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................GATGATGATGAGGGGAATGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................ATGATGATGAGGGGAATGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TG---ATGAT---------GATGATGATGATGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.95	19	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TGATG---ATGAT---------GATGATGATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.65	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................TGACAAT--G----------------------------------------------------------ATGATGATGT------T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................ATG---ATGAT---------GATGATGATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.30	6	0	0	0	0	0	0	0	4	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GATG---ATGAT---------GATGATGATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GTTGCTGATG---ATGAT---------GATGATGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GATG---ATGAT---------GATGATGATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TGATG---ATGAT---------GATGATGATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................G----------------------------------------------------------ATGATGATGT------TGCTGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GATGATGATGTTGCTGATG---.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TGATGATGTTGCTGATG---AT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................CTGATG---ATGAT---------GATGATGATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TGATGATGT------TGCTGATGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................TGATG---ATGAT---------GATGATGATGATGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................GAT---------GATGATGATGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................ATG---ATGAT---------GATGATGATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GCTGATG---ATGAT---------GATGATGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
................................................................................................................................................................................................................................GCTGATG---ATGAT---------GATGATGATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGAT---------GATGATGATGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TGCTGATG---ATGAT---------GATGATGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................ATGAT---------GATGATGATGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................TG---ATGAT---------GATGATGATGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GCTGATG---ATGAT---------GATGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................G---ATGAT---------GATGATGATGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................CTGATG---ATGAT---------GATGATGATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TGCTGATG---ATGAT---------GATGATGATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................ATG---ATGAT---------GATGATGATGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................G---ATGAT---------GATGATGATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GCTGATG---ATGAT---------GATGATGATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................TGCTGATG---ATGAT---------GATGATGATGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droMoj3

ATTGCCTGC---------------------------------GCTATGCTCGACGCATAATTGTTG---------------------------------------------------------ATCATGAT------------------------------------------------------------GATGATCGTGT------TGGTCGTGATGATGTTGCT--------------------------------------------------------------------------------------------------GCTGGCC------------------ATG-------------------------------------------------ACCGTGA------C-----------------------------------------------GTCAA---TACACATATACTAGCAC------------------------------------------ATGCACGCAATACGCACGCCGGCAACAACA--------------------------------------------------------------------------------------------------------------A------------CGACATCATTG--------------------------------------------------------ACGCT--------------------------AAT------GATGAG-------------------------G-TGTC-----------AACGG---------CACGTGAACAACA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

ATTGCCTGC---------------------------------GTTATGCTGGCCGCATAATTGCCA---------------------------------------------------------AAGCCAAT--G----------------------------------------------------------ATGATGATGA------TG---------------------------------------ATGATGACGATGATGGGAATGCGTATGTGAA--------------------------------------------TGCTGTCC------------------ATG-------------------------------------------------ACCATGA------CGTCAATGTGG--CCGCAGTGA--------------------GACAATC----------CCAAATACAACCACACTCACACTCAGATTCACACTCGCACTCGCACTCACATTCATATTCACGCACTACGCACGCCGGCAACGACA--------------------------------------------------------------------------------------------------------------A------------CGACAACATTG--------------------------------------------------------ACGCT--------------------------AAT------GACGAG-------------------------G-TGTC-----------ATCGG---------CACGTGAACAACA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................................................................................................................................AAT--G----------------------------------------------------------ATGATGATGA------TG---------------------------------------ATGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0
...................................................................................................................................................................................................ATGATGA------TG---------------------------------------ATGATGACGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1
........................................................................................................................................................................................................GA------TG---------------------------------------ATGATGACGATGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0

droWil2

TGTGCCTG-ATAT---------------------------------TGCTGCTGCTGCTGCTGTTG---------------------------------------------------------CTCCCAAT------------------------------------------------------------GACAATTATGAGAATGATA------ATAATGATG---------ATG---------ATGACGATG------------GG------------------------------------------------GACAACA--------------------------------ACC--------AAA--------------------------------AGA---AC-----------------------------------------------------------------------------------------------------------------------------------------AATAT--------GGAT------GACAA----CAACTCGTCGTCGGAACAACAGCCCGATATTATACCATATCCACTTAGTGTGGGTGAAACAAGCTGGAAACCCGCAA-AACTACAGC---AACAGCAATGGCAACAGCAACA---------------------------------------------------TCA------------------------------------------------------------------------------------T----------------------CACGAAAATGACA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGC---AACAGCAATGGCAACAGCAAC...............................................................................................................................................................................	26	2	0.50	1	0	0	0	1	0

dp5

ATTGCTGCT--G------------------------------------CTGCTGGTGTTGTTGTTG---------------------------------------------------------TTGTTGCT------------------------------------------------------------GGTGGTGGTGT------TGCTGATGTTGTTGCTGCTGCTG---CTGCTGCTGATG---------ATGATGA------------------------------------TGGT-------------G--------------------------------------------------------------------------------------------------GTGCTGCTGATG--CTGCGGCGAA-------------------GACTGTCCGGA---CATGGGTAT---------------------------------------------------------------------------AGGCA---------------------------------------------------------------------------------------------------------------------------------------------------------GCGGCGAGCTGGGG-----CATCC-----------------T--------------------------AAT------GGCGAG-------------------------GGTATTGGCGAGGCGACAAT----------------------GG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................................................................................................................................................................................................................................TGATG---------ATGATGA------------------------------------TGGT-------------G--------------------------------------------------------------------------------------------------GTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	13	0.15	2	0	2	0	0	0	0	0	0	0	0
......GCT--G------------------------------------CTGCTGGTGTTGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	10	0.10	1	0	1	0	0	0	0	0	0	0	0
............................................................TTGTTG---------------------------------------------------------TTGTTGCT------------------------------------------------------------GGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

ATTGCTGCT--G-------------------------------C--TGCTGCTGGTGTTGTTGTTG---------------------------------------------------------TTGCTGCT------------------------------------------------------------GGTGGTGGTGT------TGCTGATGTTGTTGCTGCTGCTG---CTGCTGCTGATG---------ATGATGA------------------------------------TGGT-------------G--------------------------------------------------------------------------------------------------GTGCTGCTGATG--CTGCGGCGAA-------------------GACTGTCCCGA---CATGGGTAT---------------------------------------------------------------------------AGGCA---------------------------------------------------------------------------------------------------------------------------------------------------------GCGGCGAGCTGGGG-----CATCC-----------------T--------------------------AAT------GGCGAG-------------------------GGTATTGGCGAGGCGACAAT----------------------GG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................TGCTGGTGTTGTTGTTG---------------------------------------------------------T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	11	0.27	3	3	0	0	0	0	0

droAna3

TGACGATG-ACGA---------------------------------------------------------------------------------------------------------------------T--GA----------------CGATGACGATGACGATGACGATGACGATGACGATGACGATGACGATGACG------------------------------------------------ATGAC---------------------GATGA--------------------------------------------CGATGACGATGA------CGATGGCGATGACG-----------ATG-----------------------ACG------ATGACGA------TGACGATG--------------------------------------------------ACGATG-A-----------------------------------------------------------------CGATGA--------CGAT------GACGA------------------------------------------------------------------------------------------T------------------------------------GACG-------ATGACGATGACGAT-----GACGA-----------------T--------------------------GAC------GATGAC-------------------------GATGACGATGA----------------------CGATGACGATG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

TCGCAGCA-GCAG-----------------------------------CAGCA-------------------------------------------------------------------------------------------GCA-------------------------TGAAGACGATGATGAAGACGATTACGATGA------TG------------------------ATG---------AAGAGGATG------------AGGAA---GATGAGGATCATCATCAGGATCAGG-------------GTAATGGACAC--------------------------------GAT--------CTA-----------------------ACG------------C-------------------------CCAC-------------AGATCTGCGGCACATGA-----TACACG-A------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGCAGCAGCAGCAAC---AGTCGCAG-----------------------------------------------------------------------------CAGCAGCAGCAGCAACAGGATCCCATCGACTACGAGGACGAG--GACGAC-----------------GCCGACGACGA----------------------CGAGGACGATG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGTGGATG-CTG-----------------------------------------------------------------------------------------------------------------------ATGT------TACTG----------------------------------------------ATGCCTCTGC------TGCTGC---------------TA---CTGCTGCTGACGATGATGATG---------------------------------------------ATGATGATGCGAC-----------TGCTGAAA------------------------GCT--------CCC-----------------------ATG------------A-------------------------CATTGAGCTGCG-----------------GT-GCCAAGCGACGACT-------------------------------------------------------------------------------------------ACAATGAGCAATTT----------------------------------------------------------------TTCGTA--GCTTCCAAGCTTGTTAACAGGCGCAATGACAACG---------------------------------------------------TCAGACAGATGAT--------------------------GAT------GACGAC-------------------------G-------TTGCA-----------------------CGTCAACG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGTGCGTCC---------------------------------ATTATGTGAGCGA---GCTTAATTTGAATACGATTTTTGGTCTTCTCTACTTGCAGCTAAAGGCCA-------------------------------------------------------------------------------------------------------------------ATCGAATG---CTGTGGGAGAAT---------AAGGCCA------------------------------------AGCA-------------A--------------------------------------------------------------------------------------------------GTGCTGCAGATGTCCAGCGAGGAT-------------------GACAACCTCAA---CACGATTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC---A-------------------------------------------ATAGCAA----------------------------------CAATAAGGATAACAAC-----------AAT---AAT--CAGTACACAATCAATAAAATTAT-------ACCAGAACAA----------------------CGCGGCAGACA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACAACAACA---------------------------------GCAATACTAGCAGCAACATTAGCA---------------------------------------------------------GCAACTCT------------------------------------------------------------GGCGACAACAC------AGC----------------------------------------------------------------------------AACGGAAGTGGCC-------------ACGAAATGTGA--------------------------------GTACGCGCAACTCGAGCGTGAGAGGCAGAGCGTGAGCGCAGGCGCA-TA---C--------CTG----CAACCACCCAATGT-------------------GAC-----AAT------CAGCA-G-----------------------------------------------------------------CACCAGCAGCAGC--------------------------------------------------------------------------------------------------AGCAACAAC---AA------------CAACAA-----------------------------------------------------------------C--------------------------AAT------AACGGG-------------------------AGCAAC-----------AACAAGGGGAGCAGCGCCTGCTCAATA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TACAAATG-ATG-----------------------------------------------------------------------------------------------------------------------ACGA------TGAAGA-------------------------TGTAGATGAAGATGAAGATGACGATAATG------------------------------------------------CAGATG------------AAGATAAT---------------------------GAGGATG--------------------------C------AACTGGGGAAGAAA-----------ATG-----------------------GTG------ACGAAGA------CGAGAACG--------------------------------------------------AAGAAG-A-----------------------------------------------------------------CGAAAA--------CGAC------GATGA------------------------------------------------------------------------------------------C------------------------------------GAGA-------ACGACGATGACGAG-----AACGA-----------------C--------------------------GAT------GACGAG-------------------------AACGACGATGA----------------------CGAGAACGACG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGAAGTCG-ATT---------------------CCA------------CGAGGCGCGTATTAGTCG---------------------------------------------------------ATG-----ATGC------T-------------CATTATGAGGATGCC------------------------------GC---------------------TGCCGCTGACGACG---------ATGACGATG------------AC---------------------------------GTTG-------CGCGGCCGCCG--------------------------------GTT--------ATA--------------------------------GAA---ATAGAAA---------------------------AGCG-----------------GCAGC---CAAAT----A-------------------------------------------------------------------------------CATCAACAACGAAAACGGAAAAA------------------------------------------------------------------TCAACAGTGGCAATAGCAGCAGCAGCAGCAGCAACAGCAACA---------------------------------------------------TCGT-----CTT-----------------------------T---GGG--AGACGCGTCATCGCCAGTGTTGTCCCTGT-----------------------------------CATCCGAAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATGATATG-GAG------------------------------------CTGGATGCACAGCAAGAA--------------------------------------ACCAGAACTGAGCCAAGTGCAA-----CAAC------G-------------CAACAGCAGGATCTT------------------------------GC---------------------CGATCTTGAGGAGC------------AGAACAAGGATGCGGGGGAGGCTAGTTTAAA--------------------------------------------TGTTAGCAATAATCACACAACCGATAGCAATA----------------------------------------------ATAGTTG------TAGTCGAA--------------------------------------------------A------------------------------------------------------------------------------------G--------------------------------------------------------------------------------------------------------------AA------------CAACAATGGTGGCGGCAATGAGAGTGAGCAACATGTT------------GCCAA-----------------T--------------------------TCG------GCGGAG-------------------------GACGATGATTG----------------------CGCCAACAACA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACCGGCAAC-ACTTGTTGCTGCCGGTGTTGTTGCTCCGGGGAATGTTGCTGCTGGCACCGTTGACA---------------------------------------------------------CGGACA--ACGCTGACGATGACG-AATATGATGAGGACGAC------------------------------------GA---------------GGACGATGATGATGATGATA---------TTGATGATG------------GA------------------------------------------------G-------------------------------------------------TCG-----------------------ATG------AAATTGG------T-----------------------------------------------GAAAT---TGCAGGTA-T-----------------------------------------------------------------CGCCGGTGAC--------------GACGACGAGGAGG------------------------------------------------------------------CCGACGATGA-----------------------------------------------------------------------------------------------T--------------------------GAT------GACGAT-------------------------GACGACGATGA----------------------CATTATCGGCG	Size	Hit Count	Total Norm	Total
No Reads

dm3

GGAAGTCG-ATT---------------------CGA------------CGAGGCGCGTATTAGTCG---------------------------------------------------------ATGCTCAT--T----------------------------------------------------------ATGAGGATGC------CG------------------------CTGAC---------------------------------------------GACGACGATGACGTTG-------------TGCGGCCGCCG--------------------------------GTT--------ATA--------------------------------GAA---ATAGAAA---------------------------AGCG-----------------GCAGC---CAAAT----A-------------------------------------------------------------------------------CATCAACAACGAAAACGGAAAAA------------------------------------------------------------------TCAACAGAGGCAGCAACAGTAGCAGCAGCAGCAGCAGCAACA---------------------------------------------------TCAG-------------------------------------T---GGG--AGACGCGTCATCGCCAGTGTTGTCCCTGT-----------------------------------CATCTGAAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................................................................................CGACGATGACGTTG-------------TGCGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGCAGCAGCAGCAGCAGC..................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGCAGCAGCAGCAGCA.................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGCAGCAGCAGCAGC..................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGTAGCAGCAGCAGA........................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAA................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATGAA-TG-ATG-----------------------------------------------------------------------------------------------------------------------ACGA------TAACG----------------------------------------------ATGACGATGA------CGATGATAATGATGATGATGATG---ACAAT---------------------------------------------TACAACCGTGATGATG-------------GCGAATCATCG--------------------------------GAT--------TGA-----------------------ACG------------A-------------------------CATT-------------------AGCTTGGCCAA---CAAACAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAACAAATTGACCAAGCCGGCAGCACCAACATCAG----------------------------------------------------------------------------ATATTAATTACACGTCAAC----------------------GG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCAACATCAG----------------------------------------------------------------------------ATAT.......................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................AATGATGATGATGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................................................................................TAATGATGATGATGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

ATGAA-TG-ATG-----------------------------------------------------------------------------------------------------------------------ACGA------TAACG----------------------------------------------ATGACGATGT------CGATGATAATGATGATGATGATG---ACAAT---------------------------------------------TACAACCGTGATGATG-------------GCGAATCATCG--------------------------------GAT--------TGA-----------------------ACG------------A-------------------------CATT-------------------AGCTTGGCCAA---CAAACAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAACAAATTGACCAAGCCGGCAGCACCAACATCAG----------------------------------------------------------------------------ATATTAATTACACGTCAAC----------------------GG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

TGGCGATG-GCC---------------------------------------------------------------------------------------------------------------------AT--GA----------------TGATGACGATGAT------------------------------------GA---------------TGACGATGATGATGACGATG---------ATGACGACG------------AT---------------------------------GATGATG-----TGATTCATGT--------------------------------GAT--------TCA----------------------------------T---GCGGAAA---------------------------ACAAGCAACAATTTTGGTTCACCAGA-----CAGACA-A-----------------------------------------------------------------CGCCGGC--------------------------------------------------------------------------------------------------------ACCAACAAC---AAAGGCAG-----------------------------------------------------------------------------C--------------------------AAT------AACAAG-------------------------AATATC-----------AGAAG---------GGGATAAACAACA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........................................................................................................................................................GACGATGAT------------------------------------GA---------------TGACGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	6	0.33	2	0	0	0	0	0	0	2	0	0	0	0
..........................................................................................................................................................................................................................GACGATGATGATGACGATG---------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	6	0.33	2	0	0	0	0	0	0	2	0	0	0	0
.....................................................................................................................................................................................................................................TGACGATG---------ATGACGACG------------AT---------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................G---------ATGACGACG------------AT---------------------------------GATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................A----------------TGATGACGATGAT------------------------------------GA---------------TGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................AT------------------------------------GA---------------TGACGATGATGATGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

CACTGGCA-ACGA---------------------AA-----------ACTGG------------------------------------------------------------------------CC-----ATGA------TG-------------------------------------------------ACGATGACGA------TGGCGA---------TGATGATGATGAGG---------ATGCGGATG------------AGGATGAT---------------GAGGATGCAA-------------GTGAT-------------------------------------------------TCA----------------------------------T---GCGGAAA---------------------------ACAAGCAACAATTTTGGTTTACCAGA-----CAGACA-A-----------------------------------------------------------------CGCCGGC--------------------------------------------------------------------------------------------------------ACCAACAAC---AAAGGCAA-----------------------------------------------------------------------------C--------------------------AAT------AACAAG-------------------------AATATC-----------AGAAG---------GGGATAAACAACA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................................A------TGGCGA---------TGATGATGATGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	14	0.07	1	0	0	0	0	1	0	0

dvi_826

scaffold_10324:935063-935194 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

##################################################------------------------------------------------------------------------------------------------------------------------------------################################################## ATTGCCTGCTCTATGCTGCCCGCATAATTGCCAATGACAATGATGATGATGTTGCTGATGATGATGTTGCTGATGATGATGATGATGATGATGAGGGGAATGCGTATGTGAGTGCTGGCCATGACCATGACGTCAATACACAAATACAAACACATTTACGCAATACGCAAGCCGGCAACAAGCACGACAACATTGACGCTAATGACGAGGTGTCAACGGCACGTGAACGACA ************************************************((((((.............((.((.((.((....)).)).)).)).((..((((((((((((((.((....((((......))))...............)))))))))...)))))))..))))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060659 Argentina_testes_total	SRR060681 Argx9_testes_total	M061 embryo	SRR060685 9xArg_0-2h_embryos_total	V053 head	M047 female body	SRR060667 160_females_carcasses_total	SRR060655 9x160_testes_total	SRR060660 Argentina_ovaries_total	SRR060666 160_males_carcasses_total	SRR060670 9_testes_total	V047 embryo	SRR060689 160x9_testes_total	SRR060663 160_0-2h_embryos_total	SRR060672 9x160_females_carcasses_total	SRR060657 140_testes_total	SRR060679 140x9_testes_total	SRR060686 Argx9_0-2h_embryos_total	SRR060687 9_0-2h_embryos_total	SRR060658 140_ovaries_total	SRR060656 9x160_ovaries_total	SRR060677 Argx9_ovaries_total	V116 male body	SRR060673 9_ovaries_total	SRR060664 9_males_carcasses_total	SRR060675 140x9_ovaries_total
..........................................................................................................................GACCATCACGTCAATAGGC...........................................................................................	19	3	7	1.86	13	0	0	8	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TGATGATGATGATGATGATG...........................................................................................................................................	20	0	20	1.40	28	0	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TGATGATGATGATGATGAGCGGA.....................................................................................................................................	23	1	2	1.00	2	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................GATGATGATGAGGGGAATGC.................................................................................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AATGACAATGATGATGATGCTGCT................................................................................................................................................................................	24	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................ATGATGATGAGGGGAATGCG................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TGATGATGATGATGATGATGA..........................................................................................................................................	21	0	20	0.95	19	0	0	0	5	0	0	0	7	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TGATGATGATGATGATGATGA.............................................................................................................................................	21	0	20	0.65	13	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TGATGATGATGATGATGATGAGCGGA.....................................................................................................................................	26	1	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TGACAATGATGATGATGTT...................................................................................................................................................................................	19	0	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AGACCATCACGTCAATAGAC...........................................................................................	20	3	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................ATGATGATGATGATGATGAT............................................................................................................................................	20	0	20	0.30	6	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................GACCATCACGTCAATAGTC...........................................................................................	19	3	4	0.25	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................GATGATGATGATGATGATGAT............................................................................................................................................	21	0	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................ATTGCCAATGAAACTGAAGATGAT......................................................................................................................................................................................	24	3	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................GATGAAGATGATGATGATGAGGG.......................................................................................................................................	23	1	5	0.20	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TGATGATGATGATGATGATGAGGGGTTT...................................................................................................................................	28	2	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................GTTGCTGATGATGATGATGATGAT...............................................................................................................................................	24	0	6	0.17	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................GATGATGATGATGATGATGA.............................................................................................................................................	20	0	20	0.15	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
......................................................................TGATGATGATGATGATGATGAT............................................................................................................................................	22	0	20	0.15	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TGATGATGATGATGAGGAGGGG......................................................................................................................................	22	1	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................TGATGATGATGATGAAGAGGG.......................................................................................................................................	21	1	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................GATGATGATGTTGCTGATG............................................................................................................................................................................	19	0	9	0.11	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................GATGATGATGTTGCTGATG.............................................................................................................................................................	19	0	9	0.11	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................TGATGATGTTGCTGATGAT...........................................................................................................................................................	19	0	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................CTGATGATGATGATGATGATGA.............................................................................................................................................	22	0	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0
...........................................TGATGATGTTGCTGATGAT..........................................................................................................................................................................	19	0	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TGATGATGATGATGATGATGATGA..........................................................................................................................................	24	0	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GATGATGATGATGATGAG.........................................................................................................................................	18	0	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
........................................................................ATGATGATGATGATGATGA.............................................................................................................................................	19	0	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
....................................................................GCTGATGATGATGATGATGA................................................................................................................................................	20	0	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TGATGATGATGATGATGATGAGCGCA.....................................................................................................................................	26	2	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................CGCTAAGGACAAGGTGTGA.................	19	3	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
................................AATGACAATGAAGATCATGGT...................................................................................................................................................................................	21	3	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................GCTGATGATGATGATGATGATGAT............................................................................................................................................	24	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................TGATGATGATGATGATGAG.........................................................................................................................................	19	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................GATGAAGTTGCTGAGGAT...........................................................................................................................................................	18	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................TGCTGATGATGATGATGATGAT...............................................................................................................................................	22	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGATGATGATGATGATGAG.........................................................................................................................................	20	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................TGATGATGATGATGATGATGAG.........................................................................................................................................	22	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
............................................GATGAAGTTGCTGAGGAT..........................................................................................................................................................................	18	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................GCTGATGATGATGATGATG.................................................................................................................................................	19	0	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................GATGATGATGATGATGATGAG.........................................................................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................CTGATGATGATGATGATGATGAT............................................................................................................................................	23	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................TGCTGATGATGATGATGATGATGA.............................................................................................................................................	24	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................ATGATGATGATGATGATGATG...........................................................................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................GATGATGATGATGATGAT............................................................................................................................................	18	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................GCTGATGATGATGATGATGATGA.............................................................................................................................................	23	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................TGCTGATGATGATGATGATGATGATG...........................................................................................................................................	26	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

TAACGGACGAGATACGACGGGCGTATTAACGGTTACTGTTACTACTACTACAACGACTACTACTACAACGACTACTACTACTACTACTACTACTCCCCTTACGCATACACTCACGACCGGTACTGGTACTGCAGTTATGTGTTTATGTTTGTGTAAATGCGTTATGCGTTCGGCCGTTGTTCGTGCTGTTGTAACTGCGATTACTGCTCCACAGTTGCCGTGCACTTGCTGT ************************************************((((((.............((.((.((.((....)).)).)).)).((..((((((((((((((.((....((((......))))...............)))))))))...)))))))..))))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060668 160x9_males_carcasses_total	SRR060669 160x9_females_carcasses_total	SRR060656 9x160_ovaries_total	SRR060666 160_males_carcasses_total	M027 male body	SRR060667 160_females_carcasses_total	SRR060671 9x160_males_carcasses_total	V116 male body	SRR060681 Argx9_testes_total	SRR060679 140x9_testes_total	SRR060687 9_0-2h_embryos_total	SRR060654 160x9_ovaries_total	SRR060670 9_testes_total	SRR060688 160_ovaries_total	V053 head	SRR060662 9x160_0-2h_embryos_total	SRR060684 140x9_0-2h_embryos_total	SRR060657 140_testes_total	SRR060659 Argentina_testes_total	SRR060672 9x160_females_carcasses_total
........................................................................................................................................................................TTCGTCAGGTGTTCGTGCTG............................................	20	3	9	0.89	8	1	0	0	1	2	0	1	1	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GTTCGTCCGGTGTTCGTGC..............................................	19	2	4	0.75	3	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GTTCGTCCGGTGTTCGTG...............................................	18	2	14	0.71	10	3	2	0	2	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................GTTCGTCTGTTGTTCGTGCTG............................................	21	2	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GTTCGTCCGGTGTTCGTGCGG............................................	21	3	6	0.50	3	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GTTCGGCAGGTGTTCGTG...............................................	18	2	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................AACGACTACTACTACTACTA..................................................................................................................................................	20	0	7	0.14	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TTCGGCAGGTGTTCGTGC..............................................	18	2	9	0.11	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................AAGGACTACTACTACTACTACTACT.............................................................................................................................................	25	1	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....GGACGAGTTACGACCGGCG.................................................................................................................................................................................................................	19	2	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................CAACGACTACTACTACTAC....................................................................................................................................................	19	0	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................GTTCGGCGGTCGTTCGTG...............................................	18	2	12	0.08	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................ACGTTCGGCGGTCGTTCGTG...............................................	20	3	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................CGTTCGTCAGGTGTTCGTGC..............................................	20	3	14	0.07	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................CGTTAGGCGGTTGTTCGTGG..............................................	20	3	16	0.06	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GACTACTACTACTACTACTACT.............................................................................................................................................	22	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...........................................................................TACTACTACTACTACTACT..........................................................................................................................................	19	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................CTACTACTACTACTACTACTACT..........................................................................................................................................	23	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.........................................................................ACTACTACTACTACTACTACT..........................................................................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................ACTACTACTACTACTACTACTACT..........................................................................................................................................	24	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................................................ACTACTACTACTACTACTCGC.......................................................................................................................................	21	1	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................CGACTACTACTACTACTACTACT.............................................................................................................................................	23	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

-28.5	-28.0	-27.8