dvi_8252

Name	Class	Family	Strand
(TG)n	Simple_repeat	Simple_repeat	+

GAGAAACACGGAGGACAGTTACGTTTATACATGTTACGAGAGAAAGCATATTGTTAAAGTTATTACGGCGAGCGAGACTGGTATACGGCGTACGTTTACAGCATAACACGACTATATAAGACACAGTATACATATACACACACACACACACACACACACACACACACACACGGACACACAAACAAACACACACATATTGTCAGTTTCAATCTTTCCTACGCCCGTCATCATCGTTTGGGCGGCGGCGGTCA *******************************************************************************((((((((((......))))))))))..................****************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V053 head	V116 male body	V047 embryo	SRR060684 140x9_0-2h_embryos_total	SRR060669 160x9_females_carcasses_total
............................................................................................................................................................................................................................CCCGTCGTCATCGTTAGGGGGG.........	22	3	2	0.50	1	1	0	0	0	0
.....................CGTTTATTAATGTTACGAGATA................................................................................................................................................................................................................	22	3	5	0.20	1	0	1	0	0	0
...................................ACGCGAGAAGGCATATTGTG....................................................................................................................................................................................................	20	3	7	0.14	1	0	0	1	0	0
...............................TGTTACCAGAGAAAGTAT..........................................................................................................................................................................................................	18	2	9	0.11	1	0	0	0	1	0
....................................................................................................................................................................................................................CTCCCAAGCCCGTCATCAT....................	19	3	10	0.10	1	1	0	0	0	0
....................................................GTTTAAGTTATAACGGCGAGT..................................................................................................................................................................................	21	3	13	0.08	1	1	0	0	0	0
.......................................................................................................................................................ACACACACACACACACACACGGACACACA.......................................................................	29	0	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12928:404931-405181 +	dvi_8252	CTCTTTGTG--------------------------CCTC--------CTGTCAATGCAAATATGTACAATGCT-----------------CTCTTTCGTATAACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAATAATGCCGCTCGCTCTGA------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATATG------------------------------------------------------------------------------------------------------CCGCATGCAAATGTCGTATTGTGCTGATATATTCTGTGTCATATG--------------T----------------ATATGTGTGTG--TGTGTGT--GTG----TGTGT--GTGTGTG------TG------TGTG--CCTGTGTGTTTG--T------------TTGTGT------------G--TGTATAACAGTCAAAGTTAGAA---A-GGATGCGGGCA--------GTAG----------T----------AGCAAAC---------CCGCCGCCGCCAGT
droMoj3	scaffold_6328:447843-448057 -		CTTTGCCAC--------------------------------------CTGTCAATGCAAATCTGTTCAATGCT-----------------CTATTTCGTATAACAATTACAA----------------------------------------CCAA------------------------ATAT----------------------------------------------------------------------------------------------------------------------------------GCCGCTCTCTCTGA------------------------------------------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATG----------------------------------------------------------------------------------------------------------------------------------CCGCATGTGAATGCTGA----------------------------------------------ACTTC--------G--TGC--------T--T-C--GTG-----CTCC--GTGCGCG------CGTGTGTGTGTG--CGTATGTGTGTA--T--GTGTGTAAAT------AAAT----------------AACAGTCAAAGTTAGAA---A-GGAATCGGGCA--------GTAG----------C----------AGCAAGC---------CCGCC------GCA
droGri2	scaffold_14853:8476646-8476896 -		ATCTCTATC--------------------------TCTA--------TTGTCTCTTTCAA-TTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------AGCGCTCTGAAAGGATCTAACAGTTTTCGATGCATTGCAAATTATAATTCTAATTTTTGGACATTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTATGTTTATGTGTGTGCCTGTG--TGC-----GTGTGTGTGT----------------------------------------------------------------------CTG-------------------------------TGTGTG---------------------------------------TGTGT--------------------------GTGTCTG------------------T--G------TGCATGTGTGTGTC------TG------TGTG--CATGTGTGTGTC--T------------GTGTGT------------G------------------------------------------TGTGTA----------TACGCACGATTCGCCTGCAACATCATCATCGACATCAGCCTCAAC
droWil2	scf2_1100000004762:1532466-1532706 -		ATCTGAATG--------------------------GACC--------ATGCAAATGTCAA-ATGCTA-ATGAA-----------------TTCATTCAACATACAACTTCAAAAGTCATAA-----------------------------------------------------------ATAC-----------TC---CAAGTGCCCTGACTTCATGCAACGTTAACTGTTAT----G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------G------------------------------------------------------------------------TAT----G----------------------TGT-----A----TGGGTAT--------------------------------------------------------------------GG------------------------------------------------------------------------------------------------------------------G--TATGCGT----GCATGT--ACA----TGTGT--AAGTGTG------TG------TGTG--TGTATGTGTATG--T--GTATGTGAGT------GTGG----------------------CAGGACCAGGG---G-AAG-----------------GTGGGACCCAAAAT----------GGCAAAC---------TCATTTCCGTCACT
dp5	XR_group6:12953216-12953424 -		CTCTCTGTT--------------------------ACTCC---T---TCGTT--------------------------------------TTCTCTCGTTTGCA-----------TTTTGGGCAAAACAGTGCAAATGGCGAATGGAGGCGAATGGAGGCAAAAGGAGGAGACGTGCAAC-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCA--------CACATGC---ATCCTGCAT---------------------------------------------CTGCAT--CTCTG------------------------------------------------------------------------------------------------------TGC-----TCGCATGGGT----------------------------------------------------------------------GT------------------------------------------------------------------------------------------------------------------G--TGTGTGTTA--GTGTCT--GTG----TGTGT--GTGTGTG------TG------TGTG--TGTGTGTGTGTG--T------------GTGTGT------------G------------------------------------------TGTGT--------------------------------------------------------
droPer2	scaffold_0:5860667-5860887 -		CTTACGATC--------------------------TACG--------A-------------CTGTTA-AATGAAACATTTGGCTTACATTTATGCTCGGTT--------------TTTCGGG-----------------------------------------------------------T--GTTACAAGAACTAAACAATGTACACAGATCGATCATAACTTTAAATGTAAT----T------------------------------------------------------------------------------------------------------------------------------------TATTCGATGGGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------AAATG----------------------TGT---TTG----TGTAT----------------------------------------------------------------------GT------------------------------------------------------------------------------------------------------------------G--TATGTGTAT--GTGTAT--GTG----TATGT--GTGTGTG--------------TGTG--TGTGTGTGTGTG--T--GTGTGTGAAT------GTGA----------------------TAAAACCAAAA---A-AGA-----------------------------------------------------------------------
droAna3	scaffold_13334:925615-925809 -		CTATTTGCT--------------------------CCTT--------TTGGAT-------------------------------------TTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTC-----------------------------------------------------------------------------------------------TCTCTCTC---TTAATAATT------------------------------------------------------------------------TTTTATTTAACATTCTATGCTAAATTACCGTTAATAAGTGTCCGTTTCTCTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTTGTATCATGT--------------------------GTATTAG--TAT------------GT--GTG----TGTGA--GTGTGTG------TG------GGTG--CGATGG------------------------------------------------------CGCGTCTGTGTGATT------GAG--AGTGTGTAGGTGGGCTTCAAAG---------------------------------------CT
droBip1	scf7180000396728:1099444-1099605 -		CTCGTTGTGCTGTG------------------------------GC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGT-----------------------------------------------------------------------------------------------GCTCTATG---TGACTAATA------------------------------------------------------------------------AACTTAGTAGCGTGCTAGGTTTAGTAG-CTTAAATATACAT-------------------------------------------------------------A----TAAAT----------------------------------------------------------------------------------------------------------------------------AACTATATTTATTG-------------------------------TA--AATTTGTGCCTTTG----------------TGA--GTG----AGTGT--GTGTATG------TG------TGTG--CGTGCGTGTAAA--A------------GTGTAT------------G------------------------------------------TGTAT--------------------------------------------------------
droKik1	scf7180000302388:1946050-1946201 -		AATGCAGAT--------------------------AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGCACTCAACTCGTTTCCACATTTCATTTCCACTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT----G----------------------TG-------------------------------------------------------------------------------------------------------AGAACAGCGCTTGCTTG------CCGATTATGAAAGTTG-------------------------------------------CAAAAATTT--------G--TGT--------G--TGT--GTG----TGTGT--GTGTGTG------TG------TGTG--TGTGTGTGTGTG--T------------GTGTGT------------G------------------------------------------TGTGT--------------------------------------------------------
droFic1	scf7180000453882:690879-691029 +		AATATTTACAAGTA------------------------------TTC---AC-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAGTTTGCAA---------------------------------------------TTTAACTAATGCATTTTTGCCAGT------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTGCCCAATGCACTTGACTTG------------------------------------------------------------------------------------GCGC--------------------TGCTTGA---------------------------------GCTTGTCCCCTCC----------------TCG--ATG----TCTAT--GTGTGTG------TG------TTAG----TATGGGTGTG--TGG----------GTGTGT----------------------------------------------------------GTG-------------------------------------------------------
droEle1	scf7180000491013:226922-227138 -		TTTTTTGTGGCGAGAAGGAAAAATATTGAAAATTT---------------------------------------------------------------------ATTTATAG----------------------------------------CCAA------------------------ATA-------------------------------------------------------------------------------------------CGCTACACTGCACCTGTG-----------------------------------------------------------------------------------------------------------------------T---------------------------------------------GTGTGT--CTCTG------------------------------------------------------------------------------------------------------TGC-----GTGTATGTGT----------------------------------------------------------------------GTGTCTGTGTTTGTGTGGACACAACAGATGTT------------------------------------------------TGC--TGGTGTAAGAGTGT-----------GCGCCTG------------------T--T------TGTGT--GTGTGTG------TG------TGTG--TGTGTGTGTGTGTGTGT----------GTGTGTGTGCATAG-----------------TCGGGTGTAAAA---A-TG----------------------------------------------------------------------AT
droRho1	scf7180000780197:47289-47492 +		CCCCCTTTC--------------------------CGCC-----CCC-TTTT---------------------------------------TCCGC---------A----------------AACACAAAGCGCAATTGTCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTCTGGTTTCGTGGATTTTCCGTATTCGCTGTTTGTA----------TT-GTTGTTTGCC-------------------------------------------------------------------TTT--C---------------------CA----TATGT----------------------------------------------------------------------------------------------------------------------------GGTTGTGTGTGGAGAAAGTGTGTGTTAGG--TGGTGAAA-----------------------G--TGT------------ATGTGTGTGTGTGTGT--GTGTGTG----------------------TAAGAGTGTG--T------------GTGTGTGTGTGTTG----G------------------------------------------CATGTG-------------------------------------------------------
droBia1	scf7180000301760:4467250-4467445 +		CTTTGTGTG--------------------------TTTC--------TTATTT--------------------------------------T--TTCGGCTAG---------------------------------------------------------------------------------------------------------------------------------------CTTAATTTCCGTGCGTTGTTGTTCTCCAGAAAATAAACTTGAACTTGC-CCGT-----------------------------------------------------------------------------------------------TCACTTTT---ACTCCAAAA------------------------------------------------------------------------AAC-------------------------------------------------------------TGA----G----------------------G-------------GGGG----------------------------------------------------------------------AG------------------------------------------------------------------------------------------------------------------G--TGTGTGTGTGTG--TGT--GTG----TGTGT--GTGTGTG------CG------TGTG--TGTGTGTGTGTG--T------------GTGCGT------------G------------------------------------------TGTGTT----------------------------------ATTGTTGCCATCGCAGTTAAA
droTak1	scf7180000415381:115459-115678 -		TTTTTCGCC--------------------------TTTC--------TTTTCGC---------------------------------------------------T----------------GACAAAAGCTTAAATTGAAGTCGGATTTGGCTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTGCTTTGTG---CGATTTCTAATCTCTTTGTCGCCGTCCGCTCACGTTAAGCAAACATTACGTATACGTAATACGTA----------TACGTAATATACC-------------------------------------------------------------------TTA--A---------------------CG----TTTG---------------------------------------------------------------------------------------------------------ATTGTT---------------------------------------TGTGG--------------------------GGATCAG------------------T--ATG----TGTGT--GTGTGTG------TG------TGTG--TGTGTGTGTGTG--T------------GTGTGT------------G------------------------------------------TGTGT--------------------------------------------------------
droEug1	scf7180000409033:356391-356602 +		TTTTTTATTATATA---------------------------------TTATT--------------------------------------TTCTCCCATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGTTCGCAACAATTCGCACGCTCCAACGTATGCAAAACTTTATGGAGTTGTTCATGTATAT------------------------------------------------------------------------------------------------------------------A--TGTGTGTG--TGTGTGT--GTG----TGTGT--CTGTAATTGTTGTACTTGA--TTTGCATGTGTGTGTGTG--T--GTGTGTGAAT------AGGA--------------------GAGAGCGATAGCGAGAG-------GGG--CGTATGTAGCAG----------G----------GG--------------------------CA
dm3	chrX:1479708-1479886 +		CTTTTG-TA-------TTAAAATAATTATACATTTTTTCC---A---CTCAT--------------------------------------TTCGTTCGTTTGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTA-----------------------------------------------------------------------------------------------------------------------T---------------------------------------------CTGTAT--CTTTGTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTTGTTATAT-------------------CCCAGCGC-----------GCGCGCG--TGTGTGTGTCTG--TGT--GTG----TGTGT--GTGTGTG----------------------------TGAG--TGA----------GTGTGTGTGCCTGGACATGTGTGTAAATTGTAGAAAGTCAG---------------------------------------------------------------------------------
droSim2	x:15138199-15138324 +		AATGTTCCGGCGTG------------------------------CTC---CG-T-------------------------------------TACTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCCCGACGCA-------------------------------------------------------------------------------------------------------------------------------------------------TGCCTCGCAATGGCG----------------------------------------------------CAGATACTAGA-----------------------------TTTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAG-----------------------G--TGT--------G--TGT--GTG----TGTGT--GTGTGTG------TG------TGTG--TGTGTGTGTGTG--T------------GTGTGT------------G------------------------------------------TGTGTT-------------------------------------------------------
droSec2	scaffold_21:351739-351886 -		ATCTCTGTA--------------------------GTCCCGCT-CCC-C--C-C-------------------------------------TTCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCATGGCGTA-------------------------------------------------------------------------------------------------------------------------------------------------TGTGTCACTTTTCCC----------------------------------------------------CGCTCTCTCTTTTTTGCTGT----G----------------------TGC-----G----TGAGT----------------------------------------------------------------------GT------------------------------------------------------------------------------------------------------------------G--TGTGTGTG--TG--TGT--GTG----TGTGT--GTGTGTG------TG------TGTG--TGTGTGTGTGTG--T------------GTGTGT------------G------------------------------------------TGTGTA-------------------------------------------------------
droYak3	X:9447091-9447246 -		CTGTCCGTC--------------------------TCTC--------TCTCCCC-----------------------------TCCCGCTTTAGTTGGGAT--------------TTTTGGG-----------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTC--------GATTTGG---TTTTTCTTT------------------------------------------------------------T------------------------------------------------------------TGT-----------------------------TTTTGCATGCCCTTTG----TGTGT----------------------------------------------------------------------GT------------------------------------------------------------------------------------------------------------------G--TGTGTGTGT--GTGTGT--GTG----TGTGT--GTGTGTG------TG------TGTG--TGTGTGTGTGTG--T------------GTGTGT------------G------------------------------------------TGTGT--------------------------------------------------------
droEre2	scaffold_4690:11038549-11038726 +		TCCTTTTTT--------------------------CCTT--------TTGCC--------------------------------------TTCCTTCGTTTGGGGA----------------CATACCCAGCATCTCTG-------------CCGG------------------------CAGCGCTGTCGG-------------------------------CTTCGACGTCGACAATTCGTTTTTTGTGACTCGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--T---------------------TG----CGTGTGC--------------------------------------------------------------------GT------------------------------------------------------------------------------------------------------------------G--TATGCGA----GTGTGT--GTG----TGTGT--GTGTGTG------TG------AGTG--CGAGAGTGCGTA--A------------TTGTAT------------G------------------------------------------TGTGTG-------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CTCTTTGTG--------------------------CCTC--------CTGTCAATGCAAATATGTACAATGCT-----------------CTCTTTCGTATAACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAATAATGCCGCTCGCTCTGA------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATATG------------------------------------------------------------------------------------------------------CCGCATGCAAATGTCGTATTGTGCTGATATATTCTGTGTCATATG--------------T----------------ATATGTGTGTG--TGTGTGT--GTG----TGTGT--GTGTGTG------TG------TGTG--CCTGTGTGTTTG--T------------TTGTGT------------G--TGTATAACAGTCAAAGTTAGAA---A-GGATGCGGGCA--------GTAG----------T----------AGCAAAC---------CCGCCGCCGCCAGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATG--------------T----------------ATATGTGTGTG--TG.....................................................................................................................................................................................................	19	20	0.30	6	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATG--------------T----------------ATATGTGTGTG--TGT....................................................................................................................................................................................................	20	20	0.15	3	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATG--------------T----------------ATATGTGTGTG--T......................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGT--GTG----TGTGT--GTGTGTG------TG------T..........................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATG--------------T----------------ATATGTGTGTG--TG.....................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----TGTGT--GTGTGTG------TG------TGT........................................................................................................................................................	18	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGTGTG--TGTGTGT--GTG----.......................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----TGTGT--GTGTGTG------TG------TGTG--CCTGTG...............................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--GTG----TGTGT--GTGTGTG------TG------TGTG--CC...................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--GTG----TGTGT--GTGTGTG------TG------TGTG--C....................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

CTTTGCCAC--------------------------------------CTGTCAATGCAAATCTGTTCAATGCT-----------------CTATTTCGTATAACAATTACAA----------------------------------------CCAA------------------------ATAT----------------------------------------------------------------------------------------------------------------------------------GCCGCTCTCTCTGA------------------------------------------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATG----------------------------------------------------------------------------------------------------------------------------------CCGCATGTGAATGCTGA----------------------------------------------ACTTC--------G--TGC--------T--T-C--GTG-----CTCC--GTGCGCG------CGTGTGTGTGTG--CGTATGTGTGTA--T--GTGTGTAAAT------AAAT----------------AACAGTCAAAGTTAGAA---A-GGAATCGGGCA--------GTAG----------C----------AGCAAGC---------CCGCC------GCA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

ATCTCTATC--------------------------TCTA--------TTGTCTCTTTCAA-TTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------AGCGCTCTGAAAGGATCTAACAGTTTTCGATGCATTGCAAATTATAATTCTAATTTTTGGACATTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTATGTTTATGTGTGTGCCTGTG--TGC-----GTGTGTGTGT----------------------------------------------------------------------CTG-------------------------------TGTGTG---------------------------------------TGTGT--------------------------GTGTCTG------------------T--G------TGCATGTGTGTGTC------TG------TGTG--CATGTGTGTGTC--T------------GTGTGT------------G------------------------------------------TGTGTA----------TACGCACGATTCGCCTGCAACATCATCATCGACATCAGCCTCAAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

ATCTGAATG--------------------------GACC--------ATGCAAATGTCAA-ATGCTA-ATGAA-----------------TTCATTCAACATACAACTTCAAAAGTCATAA-----------------------------------------------------------ATAC-----------TC---CAAGTGCCCTGACTTCATGCAACGTTAACTGTTAT----G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------G------------------------------------------------------------------------TAT----G----------------------TGT-----A----TGGGTAT--------------------------------------------------------------------GG------------------------------------------------------------------------------------------------------------------G--TATGCGT----GCATGT--ACA----TGTGT--AAGTGTG------TG------TGTG--TGTATGTGTATG--T--GTATGTGAGT------GTGG----------------------CAGGACCAGGG---G-AAG-----------------GTGGGACCCAAAAT----------GGCAAAC---------TCATTTCCGTCACT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

dp5

CTCTCTGTT--------------------------ACTCC---T---TCGTT--------------------------------------TTCTCTCGTTTGCA-----------TTTTGGGCAAAACAGTGCAAATGGCGAATGGAGGCGAATGGAGGCAAAAGGAGGAGACGTGCAAC-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCA--------CACATGC---ATCCTGCAT---------------------------------------------CTGCAT--CTCTG------------------------------------------------------------------------------------------------------TGC-----TCGCATGGGT----------------------------------------------------------------------GT------------------------------------------------------------------------------------------------------------------G--TGTGTGTTA--GTGTCT--GTG----TGTGT--GTGTGTG------TG------TGTG--TGTGTGTGTGTG--T------------GTGTGT------------G------------------------------------------TGTGT--------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGT----------------------------------------------------------------------GT------------------------------------------------------------------------------------------------------------------G--TGTGTGTTA--GTGTG.................................................................................................................................................................................................	22	16	0.06	1	0	0	0	0	0	1	0	0	0	0

droPer2

CTTACGATC--------------------------TACG--------A-------------CTGTTA-AATGAAACATTTGGCTTACATTTATGCTCGGTT--------------TTTCGGG-----------------------------------------------------------T--GTTACAAGAACTAAACAATGTACACAGATCGATCATAACTTTAAATGTAAT----T------------------------------------------------------------------------------------------------------------------------------------TATTCGATGGGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------AAATG----------------------TGT---TTG----TGTAT----------------------------------------------------------------------GT------------------------------------------------------------------------------------------------------------------G--TATGTGTAT--GTGTAT--GTG----TATGT--GTGTGTG--------------TGTG--TGTGTGTGTGTG--T--GTGTGTGAAT------GTGA----------------------TAAAACCAAAA---A-AGA-----------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------TGT---TTG----TGTAT----------------------------------------------------------------------GT------------------------------------------------------------------------------------------------------------------G--TATG.............................................................................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT--GTGTAT--GTG----TATGT--GTGT............................................................................................................................................................................	21	19	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--TATGTGTAT--GTGTAT--GTG----.......................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAT--GTGTAT--GTG----TATGT--G...............................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----TATGT--GTGTGTG--------------TGTG--TGTGTGT..............................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT----------------------------------------------------------------------GT------------------------------------------------------------------------------------------------------------------G--TATGTGTAT--GTGTAT--G.............................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAT----------------------------------------------------------------------GT------------------------------------------------------------------------------------------------------------------G--TATGTGTAT--GTG...................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGTAT--GTGTAT--GTG----TATG...................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--GTGTAT--GTG----TATGT--GTGT............................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1

droAna3

CTATTTGCT--------------------------CCTT--------TTGGAT-------------------------------------TTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTC-----------------------------------------------------------------------------------------------TCTCTCTC---TTAATAATT------------------------------------------------------------------------TTTTATTTAACATTCTATGCTAAATTACCGTTAATAAGTGTCCGTTTCTCTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTTGTATCATGT--------------------------GTATTAG--TAT------------GT--GTG----TGTGA--GTGTGTG------TG------GGTG--CGATGG------------------------------------------------------CGCGTCTGTGTGATT------GAG--AGTGTGTAGGTGGGCTTCAAAG---------------------------------------CT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

CTCGTTGTGCTGTG------------------------------GC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGT-----------------------------------------------------------------------------------------------GCTCTATG---TGACTAATA------------------------------------------------------------------------AACTTAGTAGCGTGCTAGGTTTAGTAG-CTTAAATATACAT-------------------------------------------------------------A----TAAAT----------------------------------------------------------------------------------------------------------------------------AACTATATTTATTG-------------------------------TA--AATTTGTGCCTTTG----------------TGA--GTG----AGTGT--GTGTATG------TG------TGTG--CGTGCGTGTAAA--A------------GTGTAT------------G------------------------------------------TGTAT--------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AATGCAGAT--------------------------AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGCACTCAACTCGTTTCCACATTTCATTTCCACTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT----G----------------------TG-------------------------------------------------------------------------------------------------------AGAACAGCGCTTGCTTG------CCGATTATGAAAGTTG-------------------------------------------CAAAAATTT--------G--TGT--------G--TGT--GTG----TGTGT--GTGTGTG------TG------TGTG--TGTGTGTGTGTG--T------------GTGTGT------------G------------------------------------------TGTGT--------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AATATTTACAAGTA------------------------------TTC---AC-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAGTTTGCAA---------------------------------------------TTTAACTAATGCATTTTTGCCAGT------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTGCCCAATGCACTTGACTTG------------------------------------------------------------------------------------GCGC--------------------TGCTTGA---------------------------------GCTTGTCCCCTCC----------------TCG--ATG----TCTAT--GTGTGTG------TG------TTAG----TATGGGTGTG--TGG----------GTGTGT----------------------------------------------------------GTG-------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTTTTTGTGGCGAGAAGGAAAAATATTGAAAATTT---------------------------------------------------------------------ATTTATAG----------------------------------------CCAA------------------------ATA-------------------------------------------------------------------------------------------CGCTACACTGCACCTGTG-----------------------------------------------------------------------------------------------------------------------T---------------------------------------------GTGTGT--CTCTG------------------------------------------------------------------------------------------------------TGC-----GTGTATGTGT----------------------------------------------------------------------GTGTCTGTGTTTGTGTGGACACAACAGATGTT------------------------------------------------TGC--TGGTGTAAGAGTGT-----------GCGCCTG------------------T--T------TGTGT--GTGTGTG------TG------TGTG--TGTGTGTGTGTGTGTGT----------GTGTGTGTGCATAG-----------------TCGGGTGTAAAA---A-TG----------------------------------------------------------------------AT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCCCCTTTC--------------------------CGCC-----CCC-TTTT---------------------------------------TCCGC---------A----------------AACACAAAGCGCAATTGTCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTCTGGTTTCGTGGATTTTCCGTATTCGCTGTTTGTA----------TT-GTTGTTTGCC-------------------------------------------------------------------TTT--C---------------------CA----TATGT----------------------------------------------------------------------------------------------------------------------------GGTTGTGTGTGGAGAAAGTGTGTGTTAGG--TGGTGAAA-----------------------G--TGT------------ATGTGTGTGTGTGTGT--GTGTGTG----------------------TAAGAGTGTG--T------------GTGTGTGTGTGTTG----G------------------------------------------CATGTG-------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTTTGTGTG--------------------------TTTC--------TTATTT--------------------------------------T--TTCGGCTAG---------------------------------------------------------------------------------------------------------------------------------------CTTAATTTCCGTGCGTTGTTGTTCTCCAGAAAATAAACTTGAACTTGC-CCGT-----------------------------------------------------------------------------------------------TCACTTTT---ACTCCAAAA------------------------------------------------------------------------AAC-------------------------------------------------------------TGA----G----------------------G-------------GGGG----------------------------------------------------------------------AG------------------------------------------------------------------------------------------------------------------G--TGTGTGTGTGTG--TGT--GTG----TGTGT--GTGTGTG------CG------TGTG--TGTGTGTGTGTG--T------------GTGCGT------------G------------------------------------------TGTGTT----------------------------------ATTGTTGCCATCGCAGTTAAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTTTTCGCC--------------------------TTTC--------TTTTCGC---------------------------------------------------T----------------GACAAAAGCTTAAATTGAAGTCGGATTTGGCTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTGCTTTGTG---CGATTTCTAATCTCTTTGTCGCCGTCCGCTCACGTTAAGCAAACATTACGTATACGTAATACGTA----------TACGTAATATACC-------------------------------------------------------------------TTA--A---------------------CG----TTTG---------------------------------------------------------------------------------------------------------ATTGTT---------------------------------------TGTGG--------------------------GGATCAG------------------T--ATG----TGTGT--GTGTGTG------TG------TGTG--TGTGTGTGTGTG--T------------GTGTGT------------G------------------------------------------TGTGT--------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTTTTTATTATATA---------------------------------TTATT--------------------------------------TTCTCCCATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGTTCGCAACAATTCGCACGCTCCAACGTATGCAAAACTTTATGGAGTTGTTCATGTATAT------------------------------------------------------------------------------------------------------------------A--TGTGTGTG--TGTGTGT--GTG----TGTGT--CTGTAATTGTTGTACTTGA--TTTGCATGTGTGTGTGTG--T--GTGTGTGAAT------AGGA--------------------GAGAGCGATAGCGAGAG-------GGG--CGTATGTAGCAG----------G----------GG--------------------------CA	Size	Hit Count	Total Norm	Total
No Reads

dm3

CTTTTG-TA-------TTAAAATAATTATACATTTTTTCC---A---CTCAT--------------------------------------TTCGTTCGTTTGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTA-----------------------------------------------------------------------------------------------------------------------T---------------------------------------------CTGTAT--CTTTGTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTTGTTATAT-------------------CCCAGCGC-----------GCGCGCG--TGTGTGTGTCTG--TGT--GTG----TGTGT--GTGTGTG----------------------------TGAG--TGA----------GTGTGTGTGCCTGGACATGTGTGTAAATTGTAGAAAGTCAG---------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTCTG--TGT--GTG----TGTGT--GT..............................................................................................................................................................................	21	20	4.40	88	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	1	0	0	2	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23	0	0	5	24	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	2	0	4	0	1	0	0	0	0	0	1	0	1	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	4	1	0	3	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGCCTGGACATGTGT....................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTCTG--TGT--GTG----TGTGT--G...............................................................................................................................................................................	20	20	1.25	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	1	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	3	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGC-----------GCGCGCG--TGTGTGTGT........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--CTTTGTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTTGT.....................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--TGA----------GTGTGTGTGCCTGG............................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTCTG--TGT--GTG----TG.....................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--TGT--GTG----TGTGT--GTGTGTG----------------------------TGAG--.......................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTCTG--TGT--GTG----TG.....................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTG--TGT--GTG----TGTGT--GTG.............................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTCTG--TGT--GTG----TGTG...................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTCTG--TGT--GTG----TGTGT--GTGC............................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTG--TGT--GTG----TGTGT--GTGT............................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTG--TGT--GTG----TGTGT--GTGTGTG----------------------------TG...........................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AATGTTCCGGCGTG------------------------------CTC---CG-T-------------------------------------TACTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCCCGACGCA-------------------------------------------------------------------------------------------------------------------------------------------------TGCCTCGCAATGGCG----------------------------------------------------CAGATACTAGA-----------------------------TTTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAG-----------------------G--TGT--------G--TGT--GTG----TGTGT--GTGTGTG------TG------TGTG--TGTGTGTGTGTG--T------------GTGTGT------------G------------------------------------------TGTGTT-------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAG-----------------------G--TGT--------G--TGT--GTG----TGTGT--GTG.............................................................................................................................................................................	23	2	1.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAG-----------------------G--TGT--------G--TGT--GTG----TG.....................................................................................................................................................................................	18	4	0.75	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAG-----------------------G--TGT--------G--TGT--GTG----TGT....................................................................................................................................................................................	19	3	0.67	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------------G--TGT--------G--TGT--GTG----TGTGT--GTGTGTG------TG------T..........................................................................................................................................................	27	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GTG----TGTGT--GTGTGTG------TG------TGT........................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----TGTGT--GTGTGTG------TG------TGT........................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

ATCTCTGTA--------------------------GTCCCGCT-CCC-C--C-C-------------------------------------TTCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCATGGCGTA-------------------------------------------------------------------------------------------------------------------------------------------------TGTGTCACTTTTCCC----------------------------------------------------CGCTCTCTCTTTTTTGCTGT----G----------------------TGC-----G----TGAGT----------------------------------------------------------------------GT------------------------------------------------------------------------------------------------------------------G--TGTGTGTG--TG--TGT--GTG----TGTGT--GTGTGTG------TG------TGTG--TGTGTGTGTGTG--T------------GTGTGT------------G------------------------------------------TGTGTA-------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT----------------------------------------------------------------------GT------------------------------------------------------------------------------------------------------------------G--TGTGTGTG--TG--TGT--GT............................................................................................................................................................................................	21	20	0.15	3	0	0	0	3
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTG--TG--TGT--GTG----TGTGT--GTGT............................................................................................................................................................................	24	20	0.10	2	0	2	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGT----------------------------------------------------------------------GT------------------------------------------------------------------------------------------------------------------G--TGTGTGTG--TG--TGT--GTG----.......................................................................................................................................................................................	24	15	0.07	1	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--TGT--GTG----TGTGT--GTGTGTG------...................................................................................................................................................................	19	20	0.05	1	0	0	0	1

droYak3

CTGTCCGTC--------------------------TCTC--------TCTCCCC-----------------------------TCCCGCTTTAGTTGGGAT--------------TTTTGGG-----------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTC--------GATTTGG---TTTTTCTTT------------------------------------------------------------T------------------------------------------------------------TGT-----------------------------TTTTGCATGCCCTTTG----TGTGT----------------------------------------------------------------------GT------------------------------------------------------------------------------------------------------------------G--TGTGTGTGT--GTGTGT--GTG----TGTGT--GTGTGTG------TG------TGTG--TGTGTGTGTGTG--T------------GTGTGT------------G------------------------------------------TGTGT--------------------------------------------------------

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

TCCTTTTTT--------------------------CCTT--------TTGCC--------------------------------------TTCCTTCGTTTGGGGA----------------CATACCCAGCATCTCTG-------------CCGG------------------------CAGCGCTGTCGG-------------------------------CTTCGACGTCGACAATTCGTTTTTTGTGACTCGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--T---------------------TG----CGTGTGC--------------------------------------------------------------------GT------------------------------------------------------------------------------------------------------------------G--TATGCGA----GTGTGT--GTG----TGTGT--GTGTGTG------TG------AGTG--CGAGAGTGCGTA--A------------TTGTAT------------G------------------------------------------TGTGTG-------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA----GTGTGT--GTG----TGTGT--GTGTGTG------TG------...........................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGT--GTGTGTG------TG------AGTG--C....................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0

dvi_8252

scaffold_12928:404981-405131 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CTCTTTGTGCCTCCTGTCAATGCAAATATGTACAATGCTCTCTTTCGTATAACAATTTCAATAATGCCGCTCGCTCTGACCATATGCCGCATGCAAATGTCGTATTGTGCTGATATATTCTGTGTCATATGTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTGTGTGTTTGTTTGTGTGTGTATAACAGTCAAAGTTAGAAAGGATGCGGGCAGTAGTAGCAAACCCGCCGCCGCCAGT ****************************************************************************************************************************((((((((((......))))))))))..................*******************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M061 embryo	V116 male body	V047 embryo	M047 female body	SRR060662 9x160_0-2h_embryos_total	V053 head	SRR060685 9xArg_0-2h_embryos_total	SRR060657 140_testes_total	M028 head	SRR060663 160_0-2h_embryos_total	SRR060658 140_ovaries_total	SRR060655 9x160_testes_total	SRR060656 9x160_ovaries_total	SRR060660 Argentina_ovaries_total	SRR060676 9xArg_ovaries_total	SRR060678 9x140_testes_total	SRR1106721 embryo_10-12h
..........................................................................................................................................................................................................CTAAGTTGGAAAGGATGTGGG............................	21	3	1	3.00	3	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AAGTGGGAAAGGATGCGGGGA..........................	21	3	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................CTAAGTGGGAAAGGATGCGGG............................	21	3	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AAGTTGGAAAGGATGTGGG............................	19	2	2	1.50	3	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AGTGGGAAAGGATGCGGG............................	18	2	2	1.00	2	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TAAGTGGGAAAGGATGCGGG............................	20	3	2	1.00	2	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GTCTAAGTGGGAAAGGATGC...............................	20	3	4	1.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AGTTGGAAAGGATGTGGGGA..........................	20	3	10	0.70	7	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................ATTCTGTCTCATATGTAT.....................................................................................................................	18	1	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AAGTGGGAAAGGATGCGGGG...........................	20	3	6	0.50	3	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AGTGGGAAAGGATGCGGGGA..........................	20	3	7	0.43	3	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................CTAAGTTGGAAAGGATGTGG.............................	20	3	5	0.40	2	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................ACAATTTCAGTAATCCCGC.....................................................................................................................................................................................	19	2	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ATATGTATATGTGTGTGTG..........................................................................................................	19	0	20	0.30	6	0	1	0	0	0	0	0	3	0	0	0	0	0	1	0	1	0
............................................................................................................................................................................................................AAGTTGGAAAGGATGTGGGG...........................	20	3	11	0.27	3	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AAGTTGGAAAGGATGTGGGGA..........................	21	3	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TAAGTGAGAAAGGATGTGGG............................	20	3	9	0.22	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GTGGGAAAGGATGCGGGGA..........................	19	3	19	0.21	4	1	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AGTGGGAAAGGATGCGGGG...........................	19	3	20	0.20	4	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................CTAAGTGAGAAAGGATGTGG.............................	20	3	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AAGTGGGAAAGGATGTGGGC...........................	20	3	17	0.18	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ATATGTATATGTGTGTGTGT.........................................................................................................	20	0	20	0.15	3	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0
..............................................................................................................................ATATGTATATGTGTGTGT...........................................................................................................	18	0	20	0.10	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
.................................................................................................................................................TGTGTGTGTGTGTGTGTGTGTGT...................................................................................	23	0	20	0.10	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ATATGTATATGTGTGTGTTT.........................................................................................................	20	1	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................TATGTATATGTGTGTGTG..........................................................................................................	18	0	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................................................................GTGTGTGTGTGTGTGTGT.................................................................................	18	0	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AGTTGGAAAGGATGTGGGG...........................	19	3	20	0.10	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................CTAAGTGTGAAAGGATGCG..............................	19	3	18	0.06	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................TATGTGTGTGTGTGTGTGTG..................................................................................................	20	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............TGACAATGTAAATAGGTACA.........................................................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................TGTGTGTGTGTGTGTGTGTGCCTGTG..........................................................................	26	0	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TGTGTGTGTGTGTGTGTGTGTGTGCC..............................................................................	26	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TGTGTGTGTGTGTGTGTGTGTGTGC...............................................................................	25	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

-2.1	-2.0	-1.9