ID:

dvi_8211

 Coordinate:

scaffold_12928:249240-249390 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.2 -20.2 -20.1

Flybase annnotation

exon [dvir_GLEANR_17210:2]; CDS [Dvir\GJ16708-cds]; intron [Dvir\GJ16708-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
(TG)nSimple_repeatSimple_repeat+
AT_richLow_complexityLow_complexity+
mature
  1. scaffold_12472:296475-296492 +
  2. scaffold_12723:5567149-5567166 +
  3. scaffold_12875:625831-625848 +
  4. scaffold_12875:630948-630965 +
  5. scaffold_12928:3727869-3727886 +
  6. scaffold_12928:5353284-5353301 +
  7. scaffold_12932:1186116-1186133 +
  8. scaffold_12963:6972458-6972475 +
  9. scaffold_12963:14940105-14940122 +
  10. scaffold_12963:15559395-15559412 +
  11. scaffold_12970:2363427-2363444 +
  12. scaffold_12970:3177187-3177204 +
  13. scaffold_13047:8496257-8496274 +
  14. scaffold_13047:14107181-14107198 +
  15. scaffold_13047:17398017-17398034 +
  16. scaffold_13049:314755-314772 +
  17. scaffold_13049:1592164-1592181 +
  18. scaffold_13049:7455310-7455327 +
  19. scaffold_13049:7959475-7959492 +
  20. scaffold_13049:18124667-18124684 +
  21. scaffold_12875:625725-625742 +
  22. scaffold_12875:4501506-4501523 +
  23. scaffold_12875:14466454-14466471 +
  24. scaffold_12928:150488-150505 +
  25. dvi_8211  scaffold_12928:249289-249306 +
  26. scaffold_12928:4984681-4984698 +
  27. scaffold_12963:2760725-2760742 +
  28. scaffold_12970:2322977-2322994 +
  29. scaffold_12970:3209150-3209167 +
  30. scaffold_13042:995506-995523 +
  31. scaffold_13042:4009093-4009110 +
  32. scaffold_13047:2621764-2621781 +
  33. scaffold_13047:4574674-4574691 +
  34. scaffold_13047:17593093-17593110 +
  35. scaffold_13049:639529-639546 +
  36. scaffold_13049:1393703-1393720 +
  37. scaffold_13049:1945947-1945964 +
  38. scaffold_13049:2533826-2533843 +
  39. scaffold_13049:2794066-2794083 +
  40. scaffold_13324:2887202-2887219 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAACATTTGAAGGCAGAACTTTCGACTTGGGGTTTTTAAATTTTTTATTTTATTTTGTTTTCAATTTTTAATTCATTTTAACGATTGCCTCGCCTTATCGCATGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTTGGTGCGTTTATTTAGAGTGTGTATTTTTTATTATTATTATTAATTAATGGTGTATTCATTCGCAGCACGTTTGCCGCATCAAACATCATTGACGTCATCGGTGGACGTTGAAGAT
**************************************************...........(((((.((((......)))).)))))((.(((.....((((((((............)))))))).....)))..))(((.........(((((.((((.....(((((((........))))))))))).)))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060665
9_females_carcasses_total
 M027
male body		 SRR060686
Argx9_0-2h_embryos_total
 SRR060659
Argentina_testes_total
 SRR060689
160x9_testes_total
 M061
embryo
 SRR060680
 9xArg_testes_total
 SRR1106728
larvae
 V047
embryo
.....................................................................................................................................................................................................................ATCAAACATCATTGACGTC................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTTGCCGCATCAAACATCATTGACGTCA.................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTTAACGTCATCGGTGGAC......... 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.........ATGGCAGAGCTTTCGACT................................................................................................................................................................................................................................ 18 2 10 0.10 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................TGTGTGTGTGCTGGTGCGTT........................................................................................................... 20 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0
...CGTTTGAATGCAGAGCTTTC.................................................................................................................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 0 1 0 0 0 0
...............GAACTTTCGACTTCGGCT.......................................................................................................................................................................................................................... 18 2 13 0.08 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................TTAATTAATGGTGTATCAAG........................................................ 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............CAGAACTGGGGACTTGGGG........................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.........................................TTCTTATTTTATTTTGTTTT.............................................................................................................................................................................................. 20 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1
...................................................................................................GCATGTGTGTGTGTGTGT...................................................................................................................................... 18 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................GTGTGCGTGTGTTGGTGC.............................................................................................................. 18 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................................TGTGTATGTGTGTGTGTGTG..................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TTTGTAAACTTCCGTCTTGAAAGCTGAACCCCAAAAATTTAAAAAATAAAATAAAACAAAAGTTAAAAATTAAGTAAAATTGCTAACGGAGCGGAATAGCGTACACACACACACACACATACACACACACACACAACCACGCAAATAAATCTCACACATAAAAAATAATAATAATAATTAATTACCACATAAGTAAGCGTCGTGCAAACGGCGTAGTTTGTAGTAACTGCAGTAGCCACCTGCAACTTCTA
**************************************************...........(((((.((((......)))).)))))((.(((.....((((((((............)))))))).....)))..))(((.........(((((.((((.....(((((((........))))))))))).)))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060669
160x9_females_carcasses_total
 GSM1528803
follicle cells		 M047
female body
 SRR060658
140_ovaries_total
 SRR060667
160_females_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
.........................................................................................................................................................ACACATAATAAATAGTAATAA............................................................................. 21 2 6 0.17 1 1 0 0 0 0 0
....TAAACTTCCGTCTTAGAAGG................................................................................................................................................................................................................................... 20 3 13 0.15 2 0 2 0 0 0 0
........................................................................................................................ACACACACACGCACAACCACG.............................................................................................................. 21 1 18 0.06 1 0 0 1 0 0 0
....................................................................................................................ACCTACACACACACACACAAC.................................................................................................................. 21 1 20 0.05 1 0 0 0 0 1 0
.............................................................................................................................................................................................................................AGTAACTGCGGTAGCAAC............ 18 2 20 0.05 1 0 0 0 1 0 0
................................................................................................................ACACACATACACACACACACAC..................................................................................................................... 22 0 20 0.05 1 0 0 1 0 0 0
.............................................................................................................................................................................................CAAGGAAGCGTAGTGCAA............................................ 18 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:249190-249440 + dvi_8211 AAACATTTGAA----GGCAGAACTTTCGACTTGGGGTTTTTAAATTTTTTATTTTATTTT----------------------------------------------------------------------------G--------------------------TTTTC---A-------ATTTTTAATTCATTTTAACGATTGCCTCGCCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGC-----------ATGT------GTGT--------GTGTGTGT--------GTA--TGTGTGTGTGTGTGT---------TGGTGCGTTTATTTAGAGTGTGT-----------------------------------------------------------------ATT----TTTTATTATTATTATTAATTAATG---------------------------------------------------------------------------GTGTATTCATTCGC--------------------------------AGCACGTTTGCCGCATCAAACATCATTGACGTCA---TCGGTGGACGTTGAAGAT
droMoj3 scaffold_6500:17193924-17194128 + TT-----------------------TCGATTTTGGCTTTTTCCATTTTTCGCTCAACAATTTTCAAAAT-----ATCAACTGTCAAATTTTTACAGCTAACGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCATATTTCCACGACATGT------GTGT--------GTGTGTGT--------GTA--AGTGTGTGGGCT------------GTGTGTGCTGTATGTGTGTGTGTGTGGGCTGTG--GGT------------C----------------------------------TGTGTTTAACAATTTAGATT-----------------------------------------------------------------------------------------------------------------------------------------CAAATTTGCCGCAAAGCACATC-----------------------------GT
droGri2 scaffold_15074:2758377-2758618 + AA-----------------------CAT----------------------------TAATATGCAAAAA-TTTGAGCAACTG-----------------------TTG-------------------------------------------TTGTTGTTGTTCT--------------------------------------------------------------------------------TTTGTTTTTGTTTTTGTTGCAGCTGCAAACAACGCACAGATTTATTTAATTGCCAGCGA-----C----------------------------------------------------------------------------------------AAAT------ATGC--AA----ATGTATGT--------GTG--TTGTTG--------TTGTGTGTGTGTGTG--T-------------------------GT-----------------------------------------------------GTTGAAAAATGTATGCA--------------------------CA--------------------CATTTT-TGTTGTTTGTCAATGCAGT-------------------------CCGC--------------------------------CTCGCAGTCGCTGTCGCCGTCGCCGTCGACGTCGACGTCATT------------G
droWil2 scf2_1100000004943:11913025-11913237 + TT-----------------------TTT----TCGTCCATTT--------CTTTTGCTACTTTTCATGC-----GTTGGTTGGTTGTCTCTCATGGCGCATGCCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGC-----------ATTT------GTAT--------GCGTGTGT--------GTA--AGTGTGTGTGTG-------------------T---------------------------T-----------------------------ACCTTTTTTAAATGTGTTTTCGTATTTAATTG------CTTTTTT----------------TCTGAGTTGTTGTACACCTACGTAAAAA---GCTAACAACATG------------------------------CATATT--------------------------------AAT-----------------------CATACGCCCCA---TGGGTAGAT-------GT
dp5 XR_group6:6325751-6325948 - GT-----------------------GTT----------------------TAT--------------------------------------------------------CT----TT------TGTATTCGGTTTCTTATTAGGTTC------------TC----------A-------TC------------------------TCG-----------------------------------TTCTCA---------------------------------------------------------------------------TCGTTTA-------------ACAATTTGAGATATCGC-------TCTC---------TTTGT-----------G----------------------TGTGTGTGTTAGTGTGTG--TGTGTG--------CTGTGTGTGTGTGTG--T-------------------------GG-------------------------TTTGGGT------CACT--------------------------------CTGGTTT----------------------------------------------------------------------------------ATGCGGCGAC--------------------------------GACGCGTTTGGTTGGTTTGTCGTCGTCGTCGTCGTCGTCGTT-----------GG
droPer2 scaffold_34:49769-49928 + TTGTGGTT-----------------------TACGATTGATT--------TAT--------------------------------------------------------TT----AT------TATTTTCATTTAATT------------ATTATTTATAT----------------------------------------------------------------------------------------------------------------------------------------------------------TTATTT--ATTAT---------------------------------------------------------------------TTAT------AT--------------------------TTA--TTTATT--------ATTTATATTTATTTA--T-------------------------TA-------------------------TTTATAT------TTATTTATTATTTATATTTATTTATTATTATTTTTTTTTATTATTG---------------------------------------------------------------------------ATTTAT------------------------------------------------------------------------------------------TTATT
droAna3 scaffold_13047:1801908-1802035 - AGACATTTAAAAGTCTG-CAAA-GTGCAGCTTGGGAATTTAAAATTG-----------------------------------------------------------------------------------------------------------------TAATTTC-TCATTGTATGC-A------------------------T--------------------------------------------------------------------------------------------------------------------------------------T---------------------------G---------------GT-----------TTTA------CTGTCTCTGTCTCTGTCTCT--------GTGTGTGTGTGTGTGTGTGT---------CTTGTGGCT-----------------------------------------ATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT
droBip1 scf7180000392927:183-355 + CT-----------------------TAT---------------------------------------------------------------------------------CT----CT------TATATATATATACATATATATATTTTTTTTTG----------------------------------------------------------------------AATAATTCGATTGGCGGT------------------------------------------------------------GCTGTTTACGATTTTTAC--GATTTTTA-------------ATGACTTATGAAATGGT-------------------------------------------------T--------TTTGATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATATTCGT--------------------------------AGCACGTTTGCCGCATCAAACATCACTGACATCG---TCGGTGGATGTGGAGGAT
droKik1 scf7180000302469:660676-660839 + TT-----------------------TCGCATCGAGATTTTCGGTTTTTCGATTTCAGTTT----------------------------------------------------------------------------G--------------------------TTTTG-----------------------------------------------------------------------------------------------CA----------------------------------------------------------ACTCCA-----AGCTGCTCCA---------------------TGTC---------------CC-----------ATAT------GTGT--------GTGTGTGT--------GTG--TATGAGTGTGTGTGT---------TTGCGGGCTGTTTTTTTTTTTGTTTTTTTTGTG--TGATTAAGTTAATTT----------------------------------------------A------------------------------TATATA------------------------------------------------------------------TTTTTT----------------------------------------------------------------------------------------TG
droFic1 scf7180000454077:586733-586866 + TT-----------------------TCA----------------------------------------------------------------------------------TACGACTTGATTTTT----------------------------------CCAGTTTTC---A-------GT------------------------TTT-----------------------------------CCCTGC---------------------------------------------------------------------------TCTTTT------------------------------------GCCGGCCTGCGTCTCCCTGT-----------ATGT------GTGT--------GTGTGTGT--------GTG--TGTGTGTGTGTGTAT---------TTGTTTGTTTGT-----------------------C-----------------------------T------------------------------------------------------------------------------------------------------------------------GTTTGTTTGTTTGT------------------------------------------------------------------------------------------TTGTT
droEle1 scf7180000491338:1788009-1788190 - CAAGGTCTGCA----CG-AGAA-T--------------------------------------------C------------------------------------------------------------------------------------------GTTGTTCGG---GG-------G------------------------TTC-----------------------------------CCCTAT---------------------------------------------------------------------------TTTT--------------------------------------ATG---------------GC-----------CCCA------ATGTGTAC----GCGTGTGT--------GTA--TGTGTTTGTGTATGT---------GTGTG--C-------------------------GG-------------------------TTGAAATTGTTATTTTCCTTATTTAT----------------------TTCAATTTATGAGATTTTTATATGCATG--------------------------------------------------------------------------------------------------------CGCACTTTTGTGGCTTCAGTTTTCATGC----------------------AAGTC
droRho1 scf7180000780079:45659-45777 - TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGT--------GTG--TGTG--TGTCTGTGT---------TTGTGGGT------------------------------------------GATTGTTTACATAA---------------------------------------------------------------------------------AATTAGCACAAATT-TAATG-----TGATGCTGCCTGCGTTGTTTGCTCATTCGTTCATTTAC--------------------------------AATACGATTACCATA----------------------------------------
droBia1 scf7180000301715:136274-136333 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT------GTGT--------GTGTGTGT--------GTG--TGTGTGTGTGTGTCT---------TTGATTGCTTATTGTTAATTTGT-----------------------------------------------------------------ATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droTak1 scf7180000414562:261112-261251 + TC-----------------------GCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT--------GTGTGTGT--------GTG--TGCG--TGTGTAGTT----TC---TTGGTTGC---------------------------C-----------------------------AATTTTATTTTACTTTTTTTCGCCGTTCTTCG------TTACTTT----------------TTTTATTTTGTTTGCCTTTGTTTGGAGC-----------------------------------------------------------------------------------------GC-------TCTGCCGACGTCGCTGCCGGCG---TCGCT------------G
droEug1 scf7180000409767:320763-320974 - GAAGGCAA------------AG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTAAAGCATGTTATAATTTCTTAAAATGAAAATGT-----TTAATATTCATAC--GATATATATCGTCACTCTCCCATCACTAATGAAATTACCTCTTATCCCT---------ATTGC-----------GTGT------GTGT--------GTGTGTGT--------ATG--TGTGTGTCTGTGTGC---------CTATGTATTTGG------------------------------------------------TCA-----------------------------AAG-------------------AA-----------------------------A-----------GTGCGTAGCATA------------------------------GATGTT--------------------------------AAT-----------------------TGAAGGCATTG---CAAACA-------CAGCA
dm3 chrX:4631079-4631228 + GTACGTAAAAA----AG-------------------------------------------CCCC-AAAA-ACTGACAAACCG-----------------------TTTA--------------------------------------ATCATTGGAGTTGTTCTCTCG---GTGTTTGC-T------------------------TT------------------------------------------------------------------------------------------------TCATTTTATAGTATTTGCCCATTTCTT------------------------------------GATGCT---------CTTGT-----------GAGT------GTGT--------TTCTGTGT--------GTG--TGTGTGTGTGTGTGT---------CTGTGTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droSim2 3r:16093068-16093259 + TT-----------------------TCAACCC---------------TTTCTTCTGCTTT----------------------------------------------------------------------------A--------------------------TTTTG---G-------AGC-TTAATGTGCATTAAGCATGTGTTTGCCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGC-----------ACGT------ATGT--------GTGTGTGT--------GTG--TGTGTGTGTGTGTAT----------GGTGTGTTCGC-----------------------TAATTAAGTGGCATT----------------------------------------------A----------------------------------------------------------------TGT----------------------G------------CTTCTTTGCTGCCCTTTTCATTTCCGGTCTTTTATTCTGGTCGCAGGTTTTCCGCTTCAAA-----------------------------------
droSec2 scaffold_26:441606-441720 - AT-----------------------TTT---------------------------------------------------------------------------------ATTTCATTTTATATTC----------------------------------CC------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCA-----TCTCCCTTCC---------------------TCTT---------------CC-----------GCCTGCGTTCGTGT--------GTGTGTGT--------GTG--TGTGTGTGTGTGTGT---------TTGTGGGC------------------------------------------GTTTGTATGTGT--------------------------AT-------------------------------------------------------GTT----------------------------------------------------------------------------------------------------------------------------------------------CTGTT
droYak3 3L:5895518-5895686 - AAATGGGAAAA----GG-AGAA-A--------------------------------------------AGTTAAAGAAATTT---------------------------ACATGGATGGCTTTTG----------------------------------CC--TTTAC---A-------TT------------T----AAGTGGTTTCCCTT----------------------------------------------------------------------------------------------------------------------------------------------------------GTT---------------GC-----------CTCT------GAGT--------GTGTCTGT--------GTG--TGTGTGTGTGTGAGT---------TAGTGCGATTGTGT-AAGTGTGC-----------------------------------------------------------------GTCTAAC-------------------TA----------------------------------------AGT-GTGT----------------------G------------TGACTTGGC--------------------------------CACA----------------------------------------------CTTTT
droEre2 scaffold_4690:18721677-18721843 - CT-----------------------CTT---------------------------------------------------------------------------------C----------------------------------------------------------------------------------------------------TTATCGCATTTATTCATTATTTCGATTGC--GT------------------------------------------------------------TCTGTTTACAGTTTCTGG---CTTGCT------------------------------------GACCTT---------ATTAT-----------GAAT------CGTC--------TTTCTTAT--------ACA--TATACATATTTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTTTCC--------------------------------AGCACGATTGCCGCATCAAACGTCGATAACGTCA---TCGGTGGATGTAGAGGAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AAACATTTGAA----GGCAGAACTTTCGACTTGGGGTTTTTAAATTTTTTATTTTATTTT----------------------------------------------------------------------------G--------------------------TTTTC---A-------ATTTTTAATTCATTTTAACGATTGCCTCGCCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGC-----------ATGT------GTGT--------GTGTGTGT--------GTA--TGTGTGTGTGTGTGT---------TGGTGCGTTTATTTAGAGTGTGT-----------------------------------------------------------------ATT----TTTTATTATTATTATTAATTAATG---------------------------------------------------------------------------GTGTATTCATTCGC--------------------------------AGCACGTTTGCCGCATCAAACATCATTGACGTCA---TCGGTGGACGTTGAAGATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAACATCATTGACGTC......................1911.001000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCCGCATCAAACATCATTGACGTCA---..................2811.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................GC-----------ATGT------GTGT--------GTGTGTGT--------....................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--------GTA--TGTGTGTGTGTGTG.................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000100000000000000000000000000000000
droMoj3
TT-----------------------TCGATTTTGGCTTTTTCCATTTTTCGCTCAACAATTTTCAAAAT-----ATCAACTGTCAAATTTTTACAGCTAACGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCATATTTCCACGACATGT------GTGT--------GTGTGTGT--------GTA--AGTGTGTGGGCT------------GTGTGTGCTGTATGTGTGTGTGTGTGGGCTGTG--GGT------------C----------------------------------TGTGTTTAACAATTTAGATT-----------------------------------------------------------------------------------------------------------------------------------------CAAATTTGCCGCAAAGCACATC-----------------------------GTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AA-----------------------CAT----------------------------TAATATGCAAAAA-TTTGAGCAACTG-----------------------TTG-------------------------------------------TTGTTGTTGTTCT--------------------------------------------------------------------------------TTTGTTTTTGTTTTTGTTGCAGCTGCAAACAACGCACAGATTTATTTAATTGCCAGCGA-----C----------------------------------------------------------------------------------------AAAT------ATGC--AA----ATGTATGT--------GTG--TTGTTG--------TTGTGTGTGTGTGTG--T-------------------------GT-----------------------------------------------------GTTGAAAAATGTATGCA--------------------------CA--------------------CATTTT-TGTTGTTTGTCAATGCAGT-------------------------CCGC--------------------------------CTCGCAGTCGCTGTCGCCGTCGCCGTCGACGTCGACGTCATT------------GSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TT-----------------------TTT----TCGTCCATTT--------CTTTTGCTACTTTTCATGC-----GTTGGTTGGTTGTCTCTCATGGCGCATGCCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGC-----------ATTT------GTAT--------GCGTGTGT--------GTA--AGTGTGTGTGTG-------------------T---------------------------T-----------------------------ACCTTTTTTAAATGTGTTTTCGTATTTAATTG------CTTTTTT----------------TCTGAGTTGTTGTACACCTACGTAAAAA---GCTAACAACATG------------------------------CATATT--------------------------------AAT-----------------------CATACGCCCCA---TGGGTAGAT-------GTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................GTTGGTTGGTTGTCTCTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................GTAT--------GCGTGTGT--------GTA--AGTGTGTGTG.....................................................................................................................................................................................................................................................................................................................2511.00100100
dp5
GT-----------------------GTT----------------------TAT--------------------------------------------------------CT----TT------TGTATTCGGTTTCTTATTAGGTTC------------TC----------A-------TC------------------------TCG-----------------------------------TTCTCA---------------------------------------------------------------------------TCGTTTA-------------ACAATTTGAGATATCGC-------TCTC---------TTTGT-----------G----------------------TGTGTGTGTTAGTGTGTG--TGTGTG--------CTGTGTGTGTGTGTG--T-------------------------GG-------------------------TTTGGGT------CACT--------------------------------CTGGTTT----------------------------------------------------------------------------------ATGCGGCGAC--------------------------------GACGCGTTTGGTTGGTTTGTCGTCGTCGTCGTCGTCGTCGTT-----------GGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTG--T-------------------------GG-------------------------TTT........................................................................................................................................................................................................................................19200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTG--T-------------------------GG-------------------------TT.........................................................................................................................................................................................................................................18200.0510000010000
droPer2
TTGTGGTT-----------------------TACGATTGATT--------TAT--------------------------------------------------------TT----AT------TATTTTCATTTAATT------------ATTATTTATAT----------------------------------------------------------------------------------------------------------------------------------------------------------TTATTT--ATTAT---------------------------------------------------------------------TTAT------AT--------------------------TTA--TTTATT--------ATTTATATTTATTTA--T-------------------------TA-------------------------TTTATAT------TTATTTATTATTTATATTTATTTATTATTATTTTTTTTTATTATTG---------------------------------------------------------------------------ATTTAT------------------------------------------------------------------------------------------TTATTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AGACATTTAAAAGTCTG-CAAA-GTGCAGCTTGGGAATTTAAAATTG-----------------------------------------------------------------------------------------------------------------TAATTTC-TCATTGTATGC-A------------------------T--------------------------------------------------------------------------------------------------------------------------------------T---------------------------G---------------GT-----------TTTA------CTGTCTCTGTCTCTGTCTCT--------GTGTGTGTGTGTGTGTGTGT---------CTTGTGGCT-----------------------------------------ATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CT-----------------------TAT---------------------------------------------------------------------------------CT----CT------TATATATATATACATATATATATTTTTTTTTG----------------------------------------------------------------------AATAATTCGATTGGCGGT------------------------------------------------------------GCTGTTTACGATTTTTAC--GATTTTTA-------------ATGACTTATGAAATGGT-------------------------------------------------T--------TTTGATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATATTCGT--------------------------------AGCACGTTTGCCGCATCAAACATCACTGACATCG---TCGGTGGATGTGGAGGATSizeHit CountTotal NormTotal
No Reads
droKik1
TT-----------------------TCGCATCGAGATTTTCGGTTTTTCGATTTCAGTTT----------------------------------------------------------------------------G--------------------------TTTTG-----------------------------------------------------------------------------------------------CA----------------------------------------------------------ACTCCA-----AGCTGCTCCA---------------------TGTC---------------CC-----------ATAT------GTGT--------GTGTGTGT--------GTG--TATGAGTGTGTGTGT---------TTGCGGGCTGTTTTTTTTTTTGTTTTTTTTGTG--TGATTAAGTTAATTT----------------------------------------------A------------------------------TATATA------------------------------------------------------------------TTTTTT----------------------------------------------------------------------------------------TGSizeHit CountTotal NormTotal
No Reads
droFic1
TT-----------------------TCA----------------------------------------------------------------------------------TACGACTTGATTTTT----------------------------------CCAGTTTTC---A-------GT------------------------TTT-----------------------------------CCCTGC---------------------------------------------------------------------------TCTTTT------------------------------------GCCGGCCTGCGTCTCCCTGT-----------ATGT------GTGT--------GTGTGTGT--------GTG--TGTGTGTGTGTGTAT---------TTGTTTGTTTGT-----------------------C-----------------------------T------------------------------------------------------------------------------------------------------------------------GTTTGTTTGTTTGT------------------------------------------------------------------------------------------TTGTTSizeHit CountTotal NormTotal
No Reads
droEle1
CAAGGTCTGCA----CG-AGAA-T--------------------------------------------C------------------------------------------------------------------------------------------GTTGTTCGG---GG-------G------------------------TTC-----------------------------------CCCTAT---------------------------------------------------------------------------TTTT--------------------------------------ATG---------------GC-----------CCCA------ATGTGTAC----GCGTGTGT--------GTA--TGTGTTTGTGTATGT---------GTGTG--C-------------------------GG-------------------------TTGAAATTGTTATTTTCCTTATTTAT----------------------TTCAATTTATGAGATTTTTATATGCATG--------------------------------------------------------------------------------------------------------CGCACTTTTGTGGCTTCAGTTTTCATGC----------------------AAGTCSizeHit CountTotal NormTotal
No Reads
droRho1
TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGT--------GTG--TGTG--TGTCTGTGT---------TTGTGGGT------------------------------------------GATTGTTTACATAA---------------------------------------------------------------------------------AATTAGCACAAATT-TAATG-----TGATGCTGCCTGCGTTGTTTGCTCATTCGTTCATTTAC--------------------------------AATACGATTACCATA----------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT------GTGT--------GTGTGTGT--------GTG--TGTGTGTGTGTGTCT---------TTGATTGCTTATTGTTAATTTGT-----------------------------------------------------------------ATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droTak1
TC-----------------------GCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT--------GTGTGTGT--------GTG--TGCG--TGTGTAGTT----TC---TTGGTTGC---------------------------C-----------------------------AATTTTATTTTACTTTTTTTCGCCGTTCTTCG------TTACTTT----------------TTTTATTTTGTTTGCCTTTGTTTGGAGC-----------------------------------------------------------------------------------------GC-------TCTGCCGACGTCGCTGCCGGCG---TCGCT------------GSizeHit CountTotal NormTotal
No Reads
droEug1
GAAGGCAA------------AG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTAAAGCATGTTATAATTTCTTAAAATGAAAATGT-----TTAATATTCATAC--GATATATATCGTCACTCTCCCATCACTAATGAAATTACCTCTTATCCCT---------ATTGC-----------GTGT------GTGT--------GTGTGTGT--------ATG--TGTGTGTCTGTGTGC---------CTATGTATTTGG------------------------------------------------TCA-----------------------------AAG-------------------AA-----------------------------A-----------GTGCGTAGCATA------------------------------GATGTT--------------------------------AAT-----------------------TGAAGGCATTG---CAAACA-------CAGCASizeHit CountTotal NormTotal
No Reads
dm3
GTACGTAAAAA----AG-------------------------------------------CCCC-AAAA-ACTGACAAACCG-----------------------TTTA--------------------------------------ATCATTGGAGTTGTTCTCTCG---GTGTTTGC-T------------------------TT------------------------------------------------------------------------------------------------TCATTTTATAGTATTTGCCCATTTCTT------------------------------------GATGCT---------CTTGT-----------GAGT------GTGT--------TTCTGTGT--------GTG--TGTGTGTGTGTGTGT---------CTGTGTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................CG---GTGTTTGC-T------------------------TT------------------------------------------------------------------------------------------------TCATTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2016.0060000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................CG---GTGTTTGC-T------------------------TT------------------------------------------------------------------------------------------------TCATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................CG---GTGTTTGC-T------------------------TT------------------------------------------------------------------------------------------------TCATTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................GTGTTTGC-T------------------------TT------------------------------------------------------------------------------------------------TCATTTTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................CG---GTGTTTGC-T------------------------TT------------------------------------------------------------------------------------------------TCATTTTATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TACGTAAAAA----AG-------------------------------------------CCCC-AAAA-ACTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................CG---GTGTTTGC-T------------------------TT------------------------------------------------------------------------------------------------TCATTTTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................GTGTTTGC-T------------------------TT------------------------------------------------------------------------------------------------TCATTTTATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................GTGTTTGC-T------------------------TT------------------------------------------------------------------------------------------------TCATTTTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TGT--------TTCTGTGT--------GTG--TGTGTGT........................................................................................................................................................................................................................................................................................................................21140.2130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGTGT---------CTG....................................................................................................................................................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000020000
................................................................................................................................................................................................................................................................................................................................................................................................................T------GTGT--------TTCTGTGT--------GTG--TGTGTG.........................................................................................................................................................................................................................................................................................................................2270.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GTGT--------TTCTGTGT--------GTG--TGT............................................................................................................................................................................................................................................................................................................................18140.1420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGTGT--------GTG--TGTGTGT........................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGTGT--------GTG--TGTGTGTG.......................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTGT---------CTGT...................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGTGT--------GTG--TGTGTGTGTG.....................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................T--------TTCTGTGT--------GTG--TGTGTGTGT......................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GT--------TTCTGTGT--------GTG--TGTGTGTG.......................................................................................................................................................................................................................................................................................................................21150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GT--------TTCTGTGT--------GTG--TGTGTGT........................................................................................................................................................................................................................................................................................................................20170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GT--------TTCTGTGT--------GTG--TGTGTG.........................................................................................................................................................................................................................................................................................................................19190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG--TGTGTGTGTGTGTGT---------.......................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG--TGTGTGTGTGTGTGT---------CT.....................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................T--------TTCTGTGT--------GTG--TGTGTG.........................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GT--------GTG--TGTGTGTGTGTGTG.................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGT---------CTGTG..................................................................................................................................................................................................................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGTGT--------GTG--TGTGTGTGT......................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGTGT--------GTG--TGTGTGTGTGT....................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGT--------GTG--TGTGTGTGTG.....................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--------GTG--TGTGTGTGTGTGTGT---------CTG....................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--TGTGTGTGTGTGTGT---------CTG....................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGTGT---------CTGTGTG................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGT--------GTG--TGTGTGTGT......................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................T--------TTCTGTGT--------GTG--TGTGTGTG.......................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGT--------GTG--TGTGTGTGTGTGTG.................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGT--------GTG--TGTGTGTGTGTGTGT---------.......................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT--------GTG--TGTGTGTGTGT....................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGT---------CTGTGTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................G--TGTGTGTGTGTGTGT---------CTGTGTG................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TT-----------------------TCAACCC---------------TTTCTTCTGCTTT----------------------------------------------------------------------------A--------------------------TTTTG---G-------AGC-TTAATGTGCATTAAGCATGTGTTTGCCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGC-----------ACGT------ATGT--------GTGTGTGT--------GTG--TGTGTGTGTGTGTAT----------GGTGTGTTCGC-----------------------TAATTAAGTGGCATT----------------------------------------------A----------------------------------------------------------------TGT----------------------G------------CTTCTTTGCTGCCCTTTTCATTTCCGGTCTTTTATTCTGGTCGCAGGTTTTCCGCTTCAAA-----------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................TAAGCATGTGTTTGCCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGC-----------ACGT------A...............................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
droSec2
AT-----------------------TTT---------------------------------------------------------------------------------ATTTCATTTTATATTC----------------------------------CC------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCA-----TCTCCCTTCC---------------------TCTT---------------CC-----------GCCTGCGTTCGTGT--------GTGTGTGT--------GTG--TGTGTGTGTGTGTGT---------TTGTGGGC------------------------------------------GTTTGTATGTGT--------------------------AT-------------------------------------------------------GTT----------------------------------------------------------------------------------------------------------------------------------------------CTGTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGT--------GTG--TGTGTGTGTGTGTGT---------.......................................................................................................................................................................................................................................................................................................24200.1020200
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GT--------GTG--TGTGTGTGTGTGTGT---------TTGTG..................................................................................................................................................................................................................................................................................................25120.0810001
....................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGT--------GTG--TGTGTGTGTGTG...................................................................................................................................................................................................................................................................................................................22200.0510010
droYak3
AAATGGGAAAA----GG-AGAA-A--------------------------------------------AGTTAAAGAAATTT---------------------------ACATGGATGGCTTTTG----------------------------------CC--TTTAC---A-------TT------------T----AAGTGGTTTCCCTT----------------------------------------------------------------------------------------------------------------------------------------------------------GTT---------------GC-----------CTCT------GAGT--------GTGTCTGT--------GTG--TGTGTGTGTGTGAGT---------TAGTGCGATTGTGT-AAGTGTGC-----------------------------------------------------------------GTCTAAC-------------------TA----------------------------------------AGT-GTGT----------------------G------------TGACTTGGC--------------------------------CACA----------------------------------------------CTTTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--------GTG--TGTGTGTGTGTGAGT---------T......................................................................................................................................................................................................................................................................................................22200.05101000000000
droEre2
CT-----------------------CTT---------------------------------------------------------------------------------C----------------------------------------------------------------------------------------------------TTATCGCATTTATTCATTATTTCGATTGC--GT------------------------------------------------------------TCTGTTTACAGTTTCTGG---CTTGCT------------------------------------GACCTT---------ATTAT-----------GAAT------CGTC--------TTTCTTAT--------ACA--TATACATATTTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTTTCC--------------------------------AGCACGATTGCCGCATCAAACGTCGATAACGTCA---TCGGTGGATGTAGAGGACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACGTCA---TCGGTGGA..........1811.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATCAAACGTCGATAACGTC......................2211.0010100000

Generated: 05/16/2015 at 08:50 PM