ID:

dvi_8200

 Coordinate:

scaffold_12928:92938-93018 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.7 -4.4 -4.3

Flybase annnotation

CDS [Dvir\GJ16694-cds]; exon [dvir_GLEANR_17197:4]; CDS [Dvir\GJ16694-cds]; exon [dvir_GLEANR_17197:5]; intron [Dvir\GJ16694-in]

Repeatable elements

NameClassFamilyStrand
(CAT)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------##################################################
TGGAATTGCTAGACATGGACAGGAATCCGCTGGACGACAAAGACTGGGACGTCAATGAGGGAGATGACGATAAGGACGATGAAGATGACGCCAACAGCAATGCTGAGGAGAGTGATGAAGCGGACACTCAGGATGACGATGATAAGAGTGATGAGGAGGATGAAGAGGATGAAGATGATGA
*********************************************************************...............((.((.((..((((...)))).))...)).))...************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 SRR060663
160_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 V116
male body		 SRR060658
140_ovaries_total
 V047
embryo
 SRR060689
160x9_testes_total
 SRR060672
9x160_females_carcasses_total
 M047
female body
 SRR060675
140x9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060659
Argentina_testes_total
 M027
male body		 M028
head
 SRR060667
160_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060657
140_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
................................................................................................................................GAGGATGACGATGATAAGAGT................................ 21 1 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TAAGGACGAGGAAGATGA............................................................................................. 18 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................GACAAAGACTGGGACGTC................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGGGACGTCAATGAGGGAGAT.................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................ATGCTGAGGAGAGTGATGAA.............................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ACGATGAAGATGACGCCAACAGCAATGC.............................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......GCTAGACATGGACAGGAGTCC......................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GGGATGAGGAGGATGAAGAGGAT........... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................GATGAGGAGGATGAAGAGGATGAT........ 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GCTGAGGAGAGTGATGAAGCGGACA....................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................CCGCTGGACGACAAAGACTGGGAC................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CATGGACAGGAATCCGCTGGAC.................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................GACTGGTACGTCAATTAGGGAGATGACG................................................................................................................ 28 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................AGTGATGAAGCGGACACTGAGGATGA............................................. 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................CGATGAAGATGACGCCAACAGC................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................ATAAGGACGATGAAGATGACGC.......................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................AGGATGACGATGATAAGAGTG............................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................CAATGAGGGAGATGACGATAAGGAC........................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................ATGAAGATGACGCCAACA..................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........AGACATGGACAGGAATCCGCTGGAC.................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................AGATGACGCCAACAGCAATGCT............................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................ATGCTGAGGAGAGTGATGAAGC............................................................ 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................GGGACGTCAATGAGGGAGATGACGAT.............................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TATGAGGAAGATGAAGAGGAT........... 21 2 3 0.67 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................GACGTCAATGAGCCAGATAAC................................................................................................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................GATAAGCGTAATGTGGAGGAT.................... 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ATGAGGAAGATGAAGAGGAT........... 20 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GAAGAGGATGAAGAAGATGA 20 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GATGAAGCGGATGAAGATG.... 19 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TGAGGAAGATGAAGAGGAT........... 19 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GATGAAGCGGATGAAGATGCT.. 21 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GAGGAAGATGAAGAGGAT........... 18 1 5 0.40 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GAAGCGCACAATCAGGATG.............................................. 19 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AGAGGATGAAGAAGATGAAGATG.... 23 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................AGAGGATGAAGAAGATGAAGATGA... 24 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................ACGATGGAGAGGATGAATATGA... 22 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GAGGATGAAGTAGATGAAGA...... 20 2 6 0.33 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
.........................................................................GGACGATGAGGATGACGC.......................................................................................... 18 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................GGATGAAGAAGATGAAGAT..... 19 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TGAAGCGGATGAAGATGCT.. 19 2 9 0.22 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AGATGAAGCGGATGAAGATG.... 20 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................TGAGGTCAGTGACGAAGC............................................................ 18 3 20 0.20 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 1 0
.....................................................................ATAAGGACGATGATGAGGACG........................................................................................... 21 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GATGAAGCGGATGAAGATGC... 20 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GATGATAAGATTGACGAAGAG....................... 21 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ATGAGGAAGATGAAGAGG............. 18 1 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................AGATGAAGCGGATGAAGAT..... 19 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GAAGATGAAGCGGATGAAGATGC... 23 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................AAGATGAAGCGGATGAAGA...... 19 2 17 0.12 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................AAGAAGGATGAAGATGAC............................................................................................ 18 2 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................AAGAGTGACGCGCAGGATG................... 19 3 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................AACGATAATGACGATGAAGA................................................................................................ 20 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................GGCGATGATAAGATTGACG............................ 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AGATGAAGCGGATGAAGATGC... 21 3 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TGACTACAAAGACGATGAAG................................................................................................. 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GATGAAGAAGATGAAGATG.... 19 1 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................AGAGGATGAAGAGGGTGA......... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................GATGAAGATGGCGCCGAC...................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................GAGTGCAGAAGAGGACACT..................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................TAGGGGATGAAGATGATC. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................GAGGATGAAGTAGATGAAGAA..... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................AGAGGATGAAGAGGGTGA 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................AAATAAGTGATGAGGAGGA..................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................GATGACGACGATATCAGTGA.............................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ACCTTAACGATCTGTACCTGTCCTTAGGCGACCTGCTGTTTCTGACCCTGCAGTTACTCCCTCTACTGCTATTCCTGCTACTTCTACTGCGGTTGTCGTTACGACTCCTCTCACTACTTCGCCTGTGAGTCCTACTGCTACTATTCTCACTACTCCTCCTACTTCTCCTACTTCTACTACT
**************************************************************...............((.((.((..((((...)))).))...)).))...********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060676
9xArg_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060687
9_0-2h_embryos_total
 SRR060673
9_ovaries_total
 V116
male body		 SRR1106714
embryo_2-4h
 SRR060669
160x9_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR1106722
embryo_10-12h
 M027
male body		 SRR060668
160x9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
......................................................................................................................................CTGCTACTATTCTCACTACTCC......................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TCTCACTACTCCTCCTACTTC................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TGAGTCCTACTGCTACTATTC................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................CGACCTGCTGTTTCTGACCCT.................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................CCTGTGACTCCTCCTGCTACT....................................... 21 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................GCTATTCCTGCTAATTCTTCT............................................................................................. 21 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................ACCCACTACTCCTTCTACTTCTC.............. 23 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................ACTTCTCCTACTACTTCTCCTACT......... 24 2 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................GACCTGCCGTTTCTG......................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................CTACCTCCCCTGTGGGTCC................................................. 19 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................TGGTACTTCTACTGCGGC........................................................................................ 18 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................CTTCTCCTACTACTTCTCCTA........... 21 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................CTTCTCCTACTACTTCTCCTAC.......... 22 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:92888-93068 - dvi_8200 TGGAATTGCTAG--ACATGGACA-GGAAT----------------------------------------------C---CGCTGGACGACAA------------AGACTGGGA---CGTCAATGAGGGAGA------------TGACGATAAG---------------------------G---------------ACGATGAAGAT---GACGC-------CA---------------------------------------A-CAGCAATGCTG---------------------------------------------------------AGGA---------------------GAG---TGATGAAGCGG------------ACACT------------CAG---------------GATGACGAT---------------G---------------ATAAGAGTGATGAGGAGGATGAA---GAGGATGAA---GATGATGA
droMoj3 scaffold_6500:18912980-18913144 - GGAG--------G---------------------------------------------AGC---------------TGGACGACGAAGACGA---------------------------------------------------GCTGGACGAGG------------------------ATG---------AG----------------------------------GCTGTCGACCAGAACGAGACGCAGCAAATGGCCAGCAT-CGACGACGATG-------------ACGA---GGA-----------------------------------TGA------------GGAAGAAG------------------------------ACGAC------------GAC---------------GATGACATC---------------G---------------ATGATGGTGATGATGAAGATGAA---GATGATGAT---GATGATGA
droGri2 scaffold_14853:6720504-6720687 - TGGACAATCTGG--ATATGACAC-AGAAT----------------------------------------------C---CGCTGGGCATCAA------------AGA---CGGCG------AGCAGGACGATGTTGAAGA---CGAAGATGAAG------------------------ATG---------AGGAGATG------------------GAGA-------------------------------------------CC-----------G------------ATGA---GGATGAGGACAATGAACCAG-----------------CAAG---------------------CGC---TGAGAA------------------------------------G---------------CAGGATAAG---------------G---------------ATGAAAAAGATGAGGACGAGGAA---GAGGACGAC---GATGAAGA
droWil2 scf2_1100000004558:188479-188666 + GAAA--------------------------------GG-G-TAGACGCGGT------GAGGACGACG---------AT---------GACAAT------------GA---TGA------------TGACAA------------TGACAATGACGATGACA------------------ATG---------AC----------------------------------A------------------------------------AT-----------GACGAAGAAG---ACGA---TGA-----------------TGAAGACAACGATGATAATAATGGTGAC---------------GA---AGATGA---------------CCAAGAC------------------------------GAGGACGAA---------------GACAATGGGG------ATAATAATGACGACGACGATGAA---GAAGATGAA---GAAGAT--
dp5 2:12522355-12522530 - TTGA--------------------------------AG-GGC---------------AAGG---------------CAGACAAGAATGGCCAGGAGGATGAGGACGA---AGA------------------------------------CGA---------------------CGACGAGGAAGGCGATGAA----------------------------------G-----------------------------------------------------------ACGATGA---AGA-----------------------CATTGAGGACAGTAA---------------------GATTATCGAAGA------------------GTACGAGTCCTTGCTCGAA---------------AATGGCGAC---------------G---------------AAGAAGATGATGAGGAGGACGAC---GAAGATGAG---AGTGAGGA
droPer2 scaffold_26:50818-50994 + TGAGATC-CTAC--GCATGGAAG-GCATC----------------------------------------------T---CGGAGCATGGCAA------------CGA---TGATGACGTCGACGACGACGA------CGA---CGACGACGACG------------------------ACG---------------------------------------------------------------------------------------------------------ACGA------CGA-----------------CGA---CGACGACGACGACGA---------------------GGACGACGACAA---------------GGACGAC------------AAC---------------GACGACGAC---------------G---------------ACGATGACGACGACGACGACGAC---GATGACGAT---GACGACGA
droAna3 scaffold_13266:18390257-18390435 + GAAA--------------------------------AT-GAT---------------GAAGACGAAGAGGACAACG---ATGAGGATGGGGA------------TGA---AGATGACGATAACG---------------------------GGA-------------------------------------------------------------------------------------------------------------AT-----------GACGATG---ATAATGA---GGA-----------------------CGAGGACGATAATAA---------------------AAATGATGACGAAGAGG------------ACAAT------------GAT---------------GATGAAGAT---------------G------AGAACGATGACGAAGGGGGTGACGAAGATGAA---GATAATGAA---GATGAAGA
droBip1 scf7180000396735:1661958-1662138 + GCTC-------G--ATACGAAGAGAGAGACTGCAGAAGAG-AAGACGAGAC------A------------------------TCGAAGA---------------------TGA---CGAGGACGAAGATAATGATGA---TGACGGGGATGGGG------------------------ATG---------GG----------------------------------G------------------------------------AT-----------GACGAAGGGG---ATGA---GGA-----------------------------------TGA------------GGACAATG------------------------------AAGAA------------GAT---------------GATGATGAG---------------G---------------ATATTGTAAATGAAGAAGATGAA---GATGATGAG---GAAGATGA
droKik1 scf7180000302470:178302-178463 - TGAC--------G-----------------------AT-GAC---------------GGGG---------------ATGAGGAGGAAGATGAC------------GA---AGA------------GGG---------------GGAGGATGGAGGAGATG------------------ATG---------------AG------------------------------------------------------------------------------G------------ATGAGGAGGATGAGGGCGGTAGAGCAA-----------------TAGA---------------------TGA---CGATGA---------------AGAAGAC------------GAG---------------GATGAAGAC---------------G---------------AAGATGAAGACGAGGATGAAGAC---GAGAATGGA---GGTGATGA
droFic1 scf7180000454050:159539-159704 - ACA---------------------------------AG-GACAA---GGAT------GAGGACGAAG---------AG---------GAGTAC------------GA---GGA------------CGAGAA------------TGAGGTTGAGAATGAAG------------------ACA---------------AG------------------GACG-------------------------------------------AG-----------G------------A------TGAGGATGAGGATGAGGAAA-----------------AGGA---------------------CGA---GGACAA---------------GGAGGAT------------AAG---------------GATGAGGAA---------------G---------------AGAACGTAGATAAGGTCGAGGAT---GAGGATGAG---GAAGAGGA
droEle1 scf7180000491214:3568282-3568447 - TACT--------GGCCATGGAGC-AGAGT----------------------------------------------C---GTCGCGAAAGGGGC------------TT---GGT---TGTCCAGGAGCATAA---TGA------CGACGACGA---------------------CGACGAAG---------AG------------------GAGGA-------TGACA------------------------------------AC-----------G--------------------------------------------------------ACGA------------------------------------------------------T------------GAG---------------GAGGACGAAGAAGATGAGAACCAGGAGGCC------------CGGAGTAATGAGGCAGAGGAA---GAGGAGGAC---GCGGATAG
droRho1 scf7180000766551:36052-36233 + ACTGA------------------------------------TAGGGACGAAGAGGACGACG---------------ATGACGAAGAAGATAAT------------GA---TAA---------------------AGA---CGACGAAGACGAAG------------------------ATG---------AA------------------------GA----CGACG------------------------------------AA-----------GACG------A---AGA---TGA-----------------CGAAGATAA---TGACAATGA---------------------------------------------------TAAC------------GAGGACGAGGAAGATAACGATGACGAG---------------A---ACG---------GGGATGACAATGAAAATGATGAC---GAGGACGAA---GATGACGA
droBia1 scf7180000302410:350926-351096 - TGCAATTGTTGG--AA-CAACAA-------------AG-GAC---------------G------------------------CTGAAGATCAT------GGGGAGGA---CGAC---G---GTGACGGTGA------------TGATGGTGAGGATGATGATGACGACGACGACGATG---------------------------------------------------------------------------------------------------------------ATGA---TGA-----------------------------------TGA------------TGACGACG------------------------------ACGAA------------GAC---------------GACGACGAT---------------G---------------ATGATGATGATGATGATGACGAC---GACGATGAC---GATGATGA
droTak1 scf7180000415420:474861-475019 + AGAC--------G-----------------------AG-GAC---------------G------------------------AAGAGGACAAT------------AA---TGA---------------------GGA---CGACGAGAACGAAG------------------------ACG---------AT---------------------AA-------TGATA------------------------------------AG-----------GACG------A---CGA---GGA-----------------CGAAGACAA---TAATGGGGA------GGACGAGGACGATG------------------------------ACGAA------------GAC---------------GATGACAAT---------------A---------------ATAATAAGGACGACGAGGACGAA---GAGGACAAT---AATGAGGA
droEug1 scf7180000409462:3488612-3488782 - AGAC--------G-----------------------AG-GAC---------------GAAG---------------ATGACGAGGAAGATAAT------------AA---GGA---------------------------CGACGAGGATGACG------------------------ACG---------AC---------------------AATAA----TGGGG------------------------------------AC-----------GACGAAG---GTGATGA---TGA-----------------------CGATGACGATAATAA---------------------AGAGAATGACGA---------------GGAGGAC------------------------------GATGATGAA---------------A---------------ATAATGGGGACGACGAGGACGAAGATGACGATGAA---GATAATAA
dm3 chrX:15579304-15579465 + TAGAGA-----------------------------------T---------------AGAG---------------AT------AGAGATAG------------------AGA---TGGAGATAGAGATAG------AGA---TGGAGATAGAG------------------------ATG---------GAGATAGA------------------GATA-------------------------------------------AA-----------G------------A------TGG--------------------AGATAG---AGATAAAGA---------------------TAG---AGATGGAGA------------TGGAGAT------------GAA---------------GATGAAGAT---------------G---------------AAGATGGAGATGAAGATGAAGAT---GAAGATGAA---GATGAAGA
droSim2 2r:3483085-3483248 - GACA--------------------------------AG-GAA---------------GAGG---------------ATGACGAAGAAGATAAT------------AA---TGA---------------------TGA------CGACGAAGAAGACAATA------------------ATA---------------ACGACGACGAAGAAGACAA--------------------------------------------------TAATAATGACG---------------------------------------------------------ACGA---------------------GGA---TGACGAAGA------------AGATAAT------------GAT---------------GATGATGAC---------------G---------------AGGATGACGAAGAAGATAATAAT---AAGGACGAC---GAAGATGA
droSec2 scaffold_1:290838-290998 - GACA--------------------------------TG-GAC---------------GAGG---------------ATGACGAAGAAGATAAT------------AA---TGA---------------------TGA---CGACGAGGACGACG------------------------AAG---------AA------------------GACAATAAT-------G------------------------------------AC-----------GACGAAGAGG---ATGA---TGA-----------------AGAAGACAA---------------------------------------TGATAA---------------AGATGAC------------GAG---------------GATGACGAA---------------G---------------AAGATAATAATAAAGACGACGAA---GATGACGAA---GAGGATAA
droYak3 3R:17647407-17647567 - CAGGAC---------------------------------TCC---------------A------------------CT---------GGCAA------------CGA---CAACG------ACAACGACAATGATGGTGA---TGGTGATGGTG------------------------ATG---------AGGACAAC------------------GACG-------------------------------------------AC-----------G------------ACGA---CGA-----------------------------------TGA------------------TGACGA---AGATGGAGCAG---------------AG------------ATG---------------GATGCTGAA---------------A---CAG---------AGACTAATGACGAGGATGTGGAC---GAGGATGGAGGGGCACATGA
droEre2 scaffold_4929:19927196-19927368 + GACG--------------------------------AT-GAC---------------GAGA---------------AT---------GGGGA------------CGA---CGAC---G---ATGACGAGAA------------TGACGAAGAGAATGGAG------------------ACG---------------AC------------------GACGAG----G------------------------------------AT-----------GACG---------A------AGA-----------------------GAA---CAATGAAGA------------------AGACGA---AGATGAAGAAGAAGATAATGATGACGAC------------GAG---------------GATGACG---------------------------------GAGATGGTGACAATGAGGAAGAG---GATGACGAA---GAAGATAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGGAATTGCTAG--ACATGGACA-GGAAT----------------------------------------------C---CGCTGGACGACAA------------AGACTGGGA---CGTCAATGAGGGAGA------------TGACGATAAG---------------------------G---------------ACGATGAAGAT---GACGC-------CA---------------------------------------A-CAGCAATGCTG---------------------------------------------------------AGGA---------------------GAG---TGATGAAGCGG------------ACACT------------CAG---------------GATGACGAT---------------G---------------ATAAGAGTGATGAGGAGGATGAA---GAGGATGAA---GATGATGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................GACAA------------AGACTGGGA---CGTC....................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................TGGGA---CGTCAATGAGGGAGA------------T............................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................ATGCTG---------------------------------------------------------AGGA---------------------GAG---TGATGAA.........................................................................................................................................2011.001000000001000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................ACGATGAAGAT---GACGC-------CA---------------------------------------A-CAGCAATGC..........................................................................................................................................................................................................................................2811.001000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGAGGATGAA---GAGGATGAT---........2411.001000000000000001000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................GCTG---------------------------------------------------------AGGA---------------------GAG---TGATGAAGCGG------------ACA......................................................................................................................2511.001000000000000000000000000010000000000000000000000000000000000000
...........................................................................C---CGCTGGACGACAA------------AGACTGGGA---C.......................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
...............CATGGACA-GGAAT----------------------------------------------C---CGCTGGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000001000000000000000000000000000000
.....................................................................................................................................................................................................CGATGAAGAT---GACGC-------CA---------------------------------------A-CAGC...............................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
....................................................................................................................................................ATAAG---------------------------G---------------ACGATGAAGAT---GACGC-------..............................................................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AG---------------GATGACGAT---------------G---------------ATAAGAGTG.....................................2111.001000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................CAATGAGGGAGA------------TGACGATAAG---------------------------G---------------AC......................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................ATGAAGAT---GACGC-------CA---------------------------------------A-CA.................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000001000000000000000000000000000
..........AG--ACATGGACA-GGAAT----------------------------------------------C---CGCTGGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................AGAT---GACGC-------CA---------------------------------------A-CAGCAATGCT.........................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................ATGCTG---------------------------------------------------------AGGA---------------------GAG---TGATGAAGC.......................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................GGGA---CGTCAATGAGGGAGA------------TGACGAT......................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000100000000000000000000000000000000000000000000000
droMoj3
GGAG--------G---------------------------------------------AGC---------------TGGACGACGAAGACGA---------------------------------------------------GCTGGACGAGG------------------------ATG---------AG----------------------------------GCTGTCGACCAGAACGAGACGCAGCAAATGGCCAGCAT-CGACGACGATG-------------ACGA---GGA-----------------------------------TGA------------GGAAGAAG------------------------------ACGAC------------GAC---------------GATGACATC---------------G---------------ATGATGGTGATGATGAAGATGAA---GATGATGAT---GATGATGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................CGACCAGAACGAGACGCAGCA................................................................................................................................................................................................................................................................2111.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGAAGATGAA---GATGATGAT---GA......2411.001000001
.........................................................................................CGA---------------------------------------------------GCTGGACGAGG------------------------ATG---------AG----------------------------------GC........................................................................................................................................................................................................................................................................................2111.001000001
droGri2
TGGACAATCTGG--ATATGACAC-AGAAT----------------------------------------------C---CGCTGGGCATCAA------------AGA---CGGCG------AGCAGGACGATGTTGAAGA---CGAAGATGAAG------------------------ATG---------AGGAGATG------------------GAGA-------------------------------------------CC-----------G------------ATGA---GGATGAGGACAATGAACCAG-----------------CAAG---------------------CGC---TGAGAA------------------------------------G---------------CAGGATAAG---------------G---------------ATGAAAAAGATGAGGACGAGGAA---GAGGACGAC---GATGAAGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................................................................................................................................................TG---------AGGAGATG------------------GAGA-------------------------------------------CC-----------G------------ATGA---GG..................................................................................................................................................................................................................2311.00101
droWil2
GAAA--------------------------------GG-G-TAGACGCGGT------GAGGACGACG---------AT---------GACAAT------------GA---TGA------------TGACAA------------TGACAATGACGATGACA------------------ATG---------AC----------------------------------A------------------------------------AT-----------GACGAAGAAG---ACGA---TGA-----------------TGAAGACAACGATGATAATAATGGTGAC---------------GA---AGATGA---------------CCAAGAC------------------------------GAGGACGAA---------------GACAATGGGG------ATAATAATGACGACGACGATGAA---GAAGATGAA---GAAGAT--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACGATGAA---GAAGATGAA---G.......2113.00330000
...............................................................................................................................................................................................................................................................................................................................................AATGGTGAC---------------GA---AGATGA---------------CCA........................................................................................................................2012.00200200
........................................................................................................................................................................................................................................................................................AAGAAG---ACGA---TGA-----------------TGAAGAC.........................................................................................................................................................................................2011.00100100
.........................................................................................................GA---TGA------------TGACAA------------TGACAATGACGATGACA------------------..........................................................................................................................................................................................................................................................................................................................................2811.00110000
............................................................................................................................................................................................................................................................................................................................................................................AGATGA---------------CCAAGAC------------------------------GAGGACGAA---------------GAC...........................................................2511.00100001
...................................................................................................................................................................................................................................................................................................................................................................................................AAGAC------------------------------GAGGACGAA---------------GACAATGGGG------ATAAT.........................................2911.00100100
.......................................................................................................................................................................................................................................................................................................................................................................GA---AGATGA---------------CCAAGAC------------------------------GAGGACGA..............................................................................2311.00100100
.................................................................................................................................................................................................................................................................................................ACGA---TGA-----------------TGAAGACAACGATGAT................................................................................................................................................................................2311.00100100
........................................................................................................................................................................................................................................................................................................................................................................A---AGATGA---------------CCAAGAC------------------------------GAGGACGAA---------------GACA..........................................................2711.00110000
.........................................................GAGGACGACG---------AT---------GACAAT------------GA---..............................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
dp5
TTGA--------------------------------AG-GGC---------------AAGG---------------CAGACAAGAATGGCCAGGAGGATGAGGACGA---AGA------------------------------------CGA---------------------CGACGAGGAAGGCGATGAA----------------------------------G-----------------------------------------------------------ACGATGA---AGA-----------------------CATTGAGGACAGTAA---------------------GATTATCGAAGA------------------GTACGAGTCCTTGCTCGAA---------------AATGGCGAC---------------G---------------AAGAAGATGATGAGGAGGACGAC---GAAGATGAG---AGTGAGGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................GGCGATGAA----------------------------------G-----------------------------------------------------------ACGATGA---AGA-----------------------C.........................................................................................................................................................................................2112.0020110000000
..........................................................................................CAGGAGGATGAGGACGA---AGA------------------------------------CG.....................................................................................................................................................................................................................................................................................................................................................................2212.0020000000020
.......................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCCTTGCTCGAA---------------AATGGC................................................................................2212.0020110000000
..................................................................................................TGAGGACGA---AGA------------------------------------CGA---------------------CGACGAGG.......................................................................................................................................................................................................................................................................................................................................2311.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACGAC---GAAGATGAG---AG......2411.0010000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................TCGAA---------------AATGGCGAC---------------G---------------AAGA..........................................1911.0010100000000
..........................................................................................CAGGAGGATGAGGACGA---AGA------------------------------------CGA---------------------CG.............................................................................................................................................................................................................................................................................................................................................2511.0010000000100
..................................................................................................................................................................................................................................................................................................................................CATTGAGGACAGTAA---------------------GATT..................................................................................................................................................1911.0010100000000
...................................................................................................................................................................................................................................................................................................GA---AGA-----------------------CATTGAGGACAGT.............................................................................................................................................................................1811.0010000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGAC---GAAGATGAG---AGTGAG..2211.0010100000000
.........................................................................................................................................................................................................................................................................................................................................GACAGTAA---------------------GATTATCGAAGA------------------........................................................................................................................2011.0010010000000
...................................................................................................................................................................................................................................................................................................GA---AGA-----------------------CATTGAGGACAGTAA---------------------......................................................................................................................................................2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................................TGAGGACAGTAA---------------------GATTATCGAAGA------------------G.......................................................................................................................2511.0010000000010
..........................................................................................CAGGAGGATGAGGACGA---AGA------------------------------------CGA---------------------...............................................................................................................................................................................................................................................................................................................................................2311.0010000000010
............................................................................................GGAGGATGAGGACGA---AGA------------------------------------CGA---------------------...............................................................................................................................................................................................................................................................................................................................................2111.0010000000100
.......................................................................................GGCCAGGAGGATGAGGACG..................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...............................................................................................................................................................................................................................................................................................CGATGA---AGA-----------------------CATTGAGGACAG..............................................................................................................................................................................2111.0010100000000
.TGA--------------------------------AG-GGC---------------AAGG---------------CAGACAAGAATGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000010
........................................................................................................................................................................................................................................................................................................AGA-----------------------CATTGAGGACAGTAA---------------------GATTATCGA.............................................................................................................................................2711.0010010000000
.............................................................................AGACAAGAATGGCCAGGAGGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACGAC---GAAGATGAG---AGTGAGG.2411.0010000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGCTCGAA---------------AATGGCGAC---------------G---------------AAG...........................................2511.0010100000000
...........................................................................................AGGAGGATGAGGACGA---AGA------------------------------------CGA---------------------CGAC...........................................................................................................................................................................................................................................................................................................................................2611.0010000000001
................................................................................................................................................................................CGAGGAAGGCGATGAA----------------------------------G-----------------------------------------------------------AC............................................................................................................................................................................................................................1911.0010100000000
.....................................................................................................................................................................................................................................................................................................................................TGAGGACAGTAA---------------------GATTATCGAAGA------------------GTA.....................................................................................................................2711.0010000000010
............................................................................................GGAGGATGAGGACGA---AGA------------------------------------CGA---------------------C..............................................................................................................................................................................................................................................................................................................................................2211.0010000000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................GAC---------------G---------------AAGAAGATGATGAGGAGGAC..........................2411.0010100000000
......................................................................................................GACGA---AGA------------------------------------CGA---------------------CGACGAGGAAG....................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..........................................................................................CAGGAGGATGAGGACGA---AGA------------------------------------CGA---------------------CGA............................................................................................................................................................................................................................................................................................................................................2611.0010000000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAC---GAAGATGAG---AGTGAGG.2211.0010100000000
.....................................................................................................GGACGA---AGA------------------------------------CGA---------------------CGACGAGGA......................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...A--------------------------------AG-GGC---------------AAGG---------------CAGACAAGAATGG...................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000010
TTGA--------------------------------AG-GGC---------------AAGG---------------CAGACAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
................................................................................................................................................................................CGAGGAAGGCGATGAA----------------------------------G-----------------------------------------------------------ACGAA.........................................................................................................................................................................................................................2211.0010000000010
.............................................................................................GAGGATGAGGACGA---AGA------------------------------------CGA---------------------...............................................................................................................................................................................................................................................................................................................................................2011.0010000000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................GAC---------------G---------------AAGAAGATGATGAGGAGGA...........................2311.0010010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGATGATGAGGAGGA...........................1820.5010100000000
............................................................................................GGAGGATGAGGACGA---AGA------------------------------------C......................................................................................................................................................................................................................................................................................................................................................................1920.5010000000010
.............................................................................................GAGGATGAGGACGA---AGA------------------------------------CA.....................................................................................................................................................................................................................................................................................................................................................................1990.2220200000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------AAGAAGATGATGAGGAA.............................1880.1310000100000
..................................................................................................TGAGGACGA---AGA------------------------------------CGA---------------------CGAA...........................................................................................................................................................................................................................................................................................................................................19110.0910000001000
droPer2
TGAGATC-CTAC--GCATGGAAG-GCATC----------------------------------------------T---CGGAGCATGGCAA------------CGA---TGATGACGTCGACGACGACGA------CGA---CGACGACGACG------------------------ACG---------------------------------------------------------------------------------------------------------ACGA------CGA-----------------CGA---CGACGACGACGACGA---------------------GGACGACGACAA---------------GGACGAC------------AAC---------------GACGACGAC---------------G---------------ACGATGACGACGACGACGACGAC---GATGACGAT---GACGACGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................GACGA---------------------GGACGACGACAA---------------GGAC.......................................................................................................................2111.001100000
......C-CTAC--GCATGGAAG-GCATC----------------------------------------------T---CGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
......C-CTAC--GCATGGAAG-GCATC----------------------------------------------T---CGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...........................................................................................................................................................................................................................................................................................................................................CGACGA---------------------GGACGACGACAA---------------GGACGAC------------AA......................................................................................................2711.001100000
.............................................................................................................................................................................................................................................................................................................................................................................GACAA---------------GGACGAC------------AAC---------------GACGACGA..............................................................................2311.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC---------------G---------------ACGATGACGACGACGA..............................21200.255410000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------G---------------ACGATGACGACGACGACGACG.........................23200.204310000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACGACGACGAC---GATGACGAT---........24130.152200000
...................................................................................................................................................................................................................................................................................................................................GACGACGACGACGA---------------------GGACG.................................................................................................................................................19200.153300000
......................................................................................................................................................................................................................................................................................................................................................................................................................C---------------GACGACGAC---------------G---------------ACGATGACGACGA.................................2470.141010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GAC---------------G---------------ACGATGACGACGACGAC.............................21200.102200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------G---------------ACGATGACGACGACGACGA...........................21200.102020000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGACGACGAC---GATGACGAT---........22180.061100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC---GATGACGAT---GACGA...18200.051001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AC---------------GACGACGAC---------------G---------------ACGATGAC......................................20200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACGACGACGAC---GATGA...............20200.051000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACGACGACGAC---GATGAC..............20200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------ACGATGACGACGACGACGACGAC---G...................25200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGACGACGACGACGACGA........................21200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------ACGATGACGACGACGACGACGAC---....................24200.051010000
.........................................................................................................................................CGA---CGACGACGACG------------------------ACG---------------------------------------------------------------------------------------------------------AC............................................................................................................................................................................................................................19200.051000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AC---------------G---------------ACGATGACGACGACGA..............................19200.051010000
droAna3
GAAA--------------------------------AT-GAT---------------GAAGACGAAGAGGACAACG---ATGAGGATGGGGA------------TGA---AGATGACGATAACG---------------------------GGA-------------------------------------------------------------------------------------------------------------AT-----------GACGATG---ATAATGA---GGA-----------------------CGAGGACGATAATAA---------------------AAATGATGACGAAGAGG------------ACAAT------------GAT---------------GATGAAGAT---------------G------AGAACGATGACGAAGGGGGTGACGAAGATGAA---GATAATGAA---GATGAAGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................GAGGACAACG---ATGAGGATGG...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...................................................................................................................................................................................................................................................................................................................................GAGGACGATAATAA---------------------AAATGATGACGAA.........................................................................................................................................2711.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATGACGAAGGGGGTGAC................................2011.001000010
........................................................................................................................................................................................................................................................................................................................................................................ATGATGACGAAGAGG------------ACAAT------------GAT---------------GA....................................................................................2511.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAA---GATAATGAA---GATGAAGA2211.001100000
.....................................T-GAT---------------GAAGACGAAGAGGACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................GAT---------------G------AGAACGATGACGAAG........................................1911.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACGAAGGGGGTGAC................................1811.001100000
................................................................................................................................................................................................................................................................................................................................................A---------------------AAATGATGACGAAGAGG------------ACA......................................................................................................................2111.001000010
......................................................................................................................................................................................................................................................................................................................................................................AAATGATGACGAAGAGG------------ACA......................................................................................................................2011.001000001
..................................................................GAGGACAACG---ATGAGGATGGGGA------------T...................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACGAAGGGGGTGACG...............................1911.001000010
.................................................................................................................................................................................................................................................................................................ATGA---GGA-----------------------CGAGGACGATAATA............................................................................................................................................................................2111.001100000
....................................................................................GATGGGGA------------TGA---AGATGACG......................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...........................................................................G---ATGAGGATGGGGA------------TGA---AGATGACG......................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
...A--------------------------------AT-GAT---------------GAAGACGAAGAGGACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACGAAGGGGGTGACGAAGATGAA---....................2711.001000001
.................................................................................GAGGATGGGGA------------TGA---AGATGACGATA...................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
droBip1
GCTC-------G--ATACGAAGAGAGAGACTGCAGAAGAG-AAGACGAGAC------A------------------------TCGAAGA---------------------TGA---CGAGGACGAAGATAATGATGA---TGACGGGGATGGGG------------------------ATG---------GG----------------------------------G------------------------------------AT-----------GACGAAGGGG---ATGA---GGA-----------------------------------TGA------------GGACAATG------------------------------AAGAA------------GAT---------------GATGATGAG---------------G---------------ATATTGTAAATGAAGAAGATGAA---GATGATGAG---GAAGATGASizeHit CountTotal NormTotal
No Reads
droKik1
TGAC--------G-----------------------AT-GAC---------------GGGG---------------ATGAGGAGGAAGATGAC------------GA---AGA------------GGG---------------GGAGGATGGAGGAGATG------------------ATG---------------AG------------------------------------------------------------------------------G------------ATGAGGAGGATGAGGGCGGTAGAGCAA-----------------TAGA---------------------TGA---CGATGA---------------AGAAGAC------------GAG---------------GATGAAGAC---------------G---------------AAGATGAAGACGAGGATGAAGAC---GAGAATGGA---GGTGATGASizeHit CountTotal NormTotal
No Reads
droFic1
ACA---------------------------------AG-GACAA---GGAT------GAGGACGAAG---------AG---------GAGTAC------------GA---GGA------------CGAGAA------------TGAGGTTGAGAATGAAG------------------ACA---------------AG------------------GACG-------------------------------------------AG-----------G------------A------TGAGGATGAGGATGAGGAAA-----------------AGGA---------------------CGA---GGACAA---------------GGAGGAT------------AAG---------------GATGAGGAA---------------G---------------AGAACGTAGATAAGGTCGAGGAT---GAGGATGAG---GAAGAGGASizeHit CountTotal NormTotal
No Reads
droEle1
TACT--------GGCCATGGAGC-AGAGT----------------------------------------------C---GTCGCGAAAGGGGC------------TT---GGT---TGTCCAGGAGCATAA---TGA------CGACGACGA---------------------CGACGAAG---------AG------------------GAGGA-------TGACA------------------------------------AC-----------G--------------------------------------------------------ACGA------------------------------------------------------T------------GAG---------------GAGGACGAAGAAGATGAGAACCAGGAGGCC------------CGGAGTAATGAGGCAGAGGAA---GAGGAGGAC---GCGGATAGSizeHit CountTotal NormTotal
No Reads
droRho1
ACTGA------------------------------------TAGGGACGAAGAGGACGACG---------------ATGACGAAGAAGATAAT------------GA---TAA---------------------AGA---CGACGAAGACGAAG------------------------ATG---------AA------------------------GA----CGACG------------------------------------AA-----------GACG------A---AGA---TGA-----------------CGAAGATAA---TGACAATGA---------------------------------------------------TAAC------------GAGGACGAGGAAGATAACGATGACGAG---------------A---ACG---------GGGATGACAATGAAAATGATGAC---GAGGACGAA---GATGACGASizeHit CountTotal NormTotal
No Reads
droBia1
TGCAATTGTTGG--AA-CAACAA-------------AG-GAC---------------G------------------------CTGAAGATCAT------GGGGAGGA---CGAC---G---GTGACGGTGA------------TGATGGTGAGGATGATGATGACGACGACGACGATG---------------------------------------------------------------------------------------------------------------ATGA---TGA-----------------------------------TGA------------TGACGACG------------------------------ACGAA------------GAC---------------GACGACGAT---------------G---------------ATGATGATGATGATGATGACGAC---GACGATGAC---GATGATGASizeHit CountTotal NormTotal
No Reads
droTak1
AGAC--------G-----------------------AG-GAC---------------G------------------------AAGAGGACAAT------------AA---TGA---------------------GGA---CGACGAGAACGAAG------------------------ACG---------AT---------------------AA-------TGATA------------------------------------AG-----------GACG------A---CGA---GGA-----------------CGAAGACAA---TAATGGGGA------GGACGAGGACGATG------------------------------ACGAA------------GAC---------------GATGACAAT---------------A---------------ATAATAAGGACGACGAGGACGAA---GAGGACAAT---AATGAGGASizeHit CountTotal NormTotal
No Reads
droEug1
AGAC--------G-----------------------AG-GAC---------------GAAG---------------ATGACGAGGAAGATAAT------------AA---GGA---------------------------CGACGAGGATGACG------------------------ACG---------AC---------------------AATAA----TGGGG------------------------------------AC-----------GACGAAG---GTGATGA---TGA-----------------------CGATGACGATAATAA---------------------AGAGAATGACGA---------------GGAGGAC------------------------------GATGATGAA---------------A---------------ATAATGGGGACGACGAGGACGAAGATGACGATGAA---GATAATAASizeHit CountTotal NormTotal
No Reads
dm3
TAGAGA-----------------------------------T---------------AGAG---------------AT------AGAGATAG------------------AGA---TGGAGATAGAGATAG------AGA---TGGAGATAGAG------------------------ATG---------GAGATAGA------------------GATA-------------------------------------------AA-----------G------------A------TGG--------------------AGATAG---AGATAAAGA---------------------TAG---AGATGGAGA------------TGGAGAT------------GAA---------------GATGAAGAT---------------G---------------AAGATGGAGATGAAGATGAAGAT---GAAGATGAA---GATGAAGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................AGA---------------------TAG---AGATGGAGA------------TGGA.......................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.............................................................................T------AGAGATAG------------------AGA---TGGAGATA................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TAGAGATAG------AGA---TGGAGATA.....................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................AT------------GAA---------------GATGAAGAT---------------G---------------AAGATGGA......................................2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGATGAAGAT---GAAGATGAA---GAT.....25190.1630000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGAAGAT---GAAGATGAA---GAT.....24200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT---GAAGATGAA---GATGAA..18200.1530000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGAT---GAAGATGAA---........18200.1530000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGATGAAGAT---GAAGATG.............21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................AT------------GAA---------------GATGAAGAT---------------G---------------AAGATG........................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGAT---GAAGATGAA---GATG....21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TGGAGA------------TGGAGAT------------GAA---------------GATG..................................................................................2070.1410000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGATGAAGAT---GAAG................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT---GAAGATGAA---GATGAAG.19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................GAT------------GAA---------------GATGAAGAT---------------G---------------AAG...........................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGAT---GAAGATGAA---GA......19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................AT------------GAA---------------GATGAAGAT---------------G---------------AAGA..........................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAT---GAAGATGAA---GA......18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................T------------GAA---------------GATGAAGAT---------------G---------------AAGA..........................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GAAGATGAA---GATGAAGA18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGATGAAGAT---GAAGA...............18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---GAAGATGAA---GATGAAGA19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGATGAAGAT---GAAGA...............19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGATGAAGAT---GAA.................18200.1020000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGAT---GAAGATGAA---G.......19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGATGAAGAT---GAAGATGAA---GATGAAG.29160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAT------------GAA---------------GATGAAT...............................................................................17170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGATGAAGATGAAT.........................17170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGATGAAGAT---GAAGATGAA---GATG....26190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAAGATGAAGAT---GAA.................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGATGAAGAT---GAAGATGA............21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GAT------------GAA---------------GATGAAGAT---------------G---------------AA............................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGAT---GAAGATGAA---G.......18200.0510000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAT---GAAGATGAA---GAT.....18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGATGAAGAT---GAAGA...............20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GAT------------GAA---------------GATGAAGAT---------------G---------------AAGAT.........................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAT---GAAGATGAA---GATGAA..19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAT---GAAGATGAA---GATGAA..21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAAGAT---GAAGATGAA---G.......20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAT---GAAGATGAA---GATGAAG.20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGAT---GAAGATGAA---GA......20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAAGAT---GAAGATGAA---........19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GAT------------GAA---------------GATGAAGAT---------------G---------------AAGA..........................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---GAAGATGAA---GATGAAG.18200.0510000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGAAGAT---GAAGATGAA---........21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAAGATGAAGAT---GA..................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................AT------------GAA---------------GATGAAGAT---------------G---------------AAGAT.........................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGAT------------GAA---------------GATGAAGAT---------------G---------------AA............................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGAAGAT---GAAGAT..............18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAAGATGAAGAT---GAAA................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGAT---GAAGATGAA---GATGA...23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGAT---GAAGATGAA---GAT.....21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAAGATGAAGAT---GAAG................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
droSim2
GACA--------------------------------AG-GAA---------------GAGG---------------ATGACGAAGAAGATAAT------------AA---TGA---------------------TGA------CGACGAAGAAGACAATA------------------ATA---------------ACGACGACGAAGAAGACAA--------------------------------------------------TAATAATGACG---------------------------------------------------------ACGA---------------------GGA---TGACGAAGA------------AGATAAT------------GAT---------------GATGATGAC---------------G---------------AGGATGACGAAGAAGATAATAAT---AAGGACGAC---GAAGATGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAC---------------G---------------AGGATGACGAAG..................................2111.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AT---------------GATGATGAC---------------G---------------AGGATGACGAAGAAGA..............................2811.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GAT---------------GATGATGAC---------------G---------------AGG...........................................16100.10100000000001000000
droSec2
GACA--------------------------------TG-GAC---------------GAGG---------------ATGACGAAGAAGATAAT------------AA---TGA---------------------TGA---CGACGAGGACGACG------------------------AAG---------AA------------------GACAATAAT-------G------------------------------------AC-----------GACGAAGAGG---ATGA---TGA-----------------AGAAGACAA---------------------------------------TGATAA---------------AGATGAC------------GAG---------------GATGACGAA---------------G---------------AAGATAATAATAAAGACGACGAA---GATGACGAA---GAGGATAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................G---------AA------------------GACAATAAT-------G------------------------------------AC-----------GACG....................................................................................................................................................................................................................................1911.0011000
..................................................................................................................................................................................................................................G------------------------------------AC-----------GACGAAGAGG---ATGA---TGA-----------------A...............................................................................................................................................................................................2111.0010100
..........................................................................................................A---TGA---------------------TGA---CGACGAGGACGACG------------------------AAG---------A.............................................................................................................................................................................................................................................................................................................................2511.0010100
droYak3
CAGGAC---------------------------------TCC---------------A------------------CT---------GGCAA------------CGA---CAACG------ACAACGACAATGATGGTGA---TGGTGATGGTG------------------------ATG---------AGGACAAC------------------GACG-------------------------------------------AC-----------G------------ACGA---CGA-----------------------------------TGA------------------TGACGA---AGATGGAGCAG---------------AG------------ATG---------------GATGCTGAA---------------A---CAG---------AGACTAATGACGAGGATGTGGAC---GAGGATGGAGGGGCACATGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GACG--------------------------------AT-GAC---------------GAGA---------------AT---------GGGGA------------CGA---CGAC---G---ATGACGAGAA------------TGACGAAGAGAATGGAG------------------ACG---------------AC------------------GACGAG----G------------------------------------AT-----------GACG---------A------AGA-----------------------GAA---CAATGAAGA------------------AGACGA---AGATGAAGAAGAAGATAATGATGACGAC------------GAG---------------GATGACG---------------------------------GAGATGGTGACAATGAGGAAGAG---GATGACGAA---GAAGATAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................GAC------------GAG---------------GATGACG---------------------------------GAGATGGTG.....................................2211.0011000000
.........................................................GAGA---------------AT---------GGGGA------------CGA---CGAC---G---ATGAC..............................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
............................................................A---------------AT---------GGGGA------------CGA---CGAC---G---ATGAC..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.................................................................................................................................AA------------TGACGAAGAGAATGGAG------------------..........................................................................................................................................................................................................................................................................................................................................1911.0011000000
..........................................................................................................................................................................................................................................................................................................................................ATGAAGA------------------AGACGA---AGATGAAG........................................................................................................................................2111.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGTGACAATGAGGAAGAG---GATG................2611.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAAGAG---GATGACGAA---GAAGA...2411.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................TAATGATGACGAC------------GAG---------------GATGACG---------------------------------GAG...........................................2611.0010000100

Generated: 05/16/2015 at 08:33 PM