dvi_8173

Name	Class	Family	Strand
Gypsy-4_DTa-I-int	LTR	Gypsy	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TCAACCTGCCTAAAAAGCGATTTGAACATATCCATATTGATTTAATTGGCCCTGTTGCCACTGTCCAACAATTACAGGTACTGTCTGACGTGCATTGACCGGTTCTCACGCTGGCCGGCGGCAGTCCCAATAACATAACGGCAGAGACGGAAGCTAAATTGCATGTTTGGATTGCAAACTACGGCATGCCACACTTCACAGCTACCGCCGCTCAAAGCACCTTATGAGGGGCCATTTCTAGTTATCAGCCG *******************************************************....((.............((.((((.(((...........((((((........)))))))))))))))))************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060666 160_males_carcasses_total	M047 female body	M027 male body	SRR060675 140x9_ovaries_total	SRR060670 9_testes_total	SRR060689 160x9_testes_total	SRR060667 160_females_carcasses_total
.............................................TTGGCCCTGTTGTCACTGTA..........................................................................................................................................................................................	20	2	1	1.00	1	1	0	0	0	0	0	0
.........................................................CCACTGTCCAACAATTACAGG.............................................................................................................................................................................	21	0	6	0.17	1	0	1	0	0	0	0	0
............................................................................................................CGCTGGCCGGCGGCAGTCCCA..........................................................................................................................	21	0	6	0.17	1	0	0	0	1	0	0	0
......................................................................ATTACAGGTACTGTCTGACGTGC..............................................................................................................................................................	23	0	7	0.14	1	0	0	1	0	0	0	0
......................................................................................................................................................................TTGGATTGCAAACTACGGCATC...............................................................	22	1	7	0.14	1	0	0	0	0	0	1	0
......................................................................................................................................................................TTGGATTGCAAACTACGGCCTC...............................................................	22	2	7	0.14	1	0	0	0	0	1	0	0
......................................................................ATTACAGGTACTGTCTGACGTGCATC...........................................................................................................................................................	26	1	7	0.14	1	0	1	0	0	0	0	0
........................................................................TACAGGTACTGTCTGACGTGC..............................................................................................................................................................	21	0	8	0.13	1	0	1	0	0	0	0	0
.......................................................................TTACAGGTACTGTCTGACGT................................................................................................................................................................	20	0	8	0.13	1	0	1	0	0	0	0	0
..............................................................................TACTGTCTGACGTGCATTGACCC......................................................................................................................................................	23	1	8	0.13	1	0	1	0	0	0	0	0
.........................................................................ACAGGTACTGTCTGACGTGCATC...........................................................................................................................................................	23	1	8	0.13	1	0	0	1	0	0	0	0
...........................................................................AGGTACTGTCTGACTTGCATTGACC.......................................................................................................................................................	25	1	8	0.13	1	0	0	1	0	0	0	0
..........................................TCTTTGGCCCTGTTGTCACTG............................................................................................................................................................................................	21	3	10	0.10	1	0	0	0	0	0	0	1

AGTTGGACGGATTTTTCGCTAAACTTGTATAGGTATAACTAAATTAACCGGGACAACGGTGACAGGTTGTTAATGTCCATGACAGACTGCACGTAACTGGCCAAGAGTGCGACCGGCCGCCGTCAGGGTTATTGTATTGCCGTCTCTGCCTTCGATTTAACGTACAAACCTAACGTTTGATGCCGTACGGTGTGAAGTGTCGATGGCGGCGAGTTTCGTGGAATACTCCCCGGTAAAGATCAATAGTCGGC ************************************************************************************************************************....((.............((.((((.(((...........((((((........)))))))))))))))))*******************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	V047 embryo	V053 head	M027 male body	SRR060682 9x140_0-2h_embryos_total	V116 male body	SRR060675 140x9_ovaries_total	SRR060684 140x9_0-2h_embryos_total	SRR060686 Argx9_0-2h_embryos_total	SRR060672 9x160_females_carcasses_total	SRR060685 9xArg_0-2h_embryos_total	GSM1528803 follicle cells	SRR060657 140_testes_total	SRR060687 9_0-2h_embryos_total
.........GATTTTTCCCTAAACTTG................................................................................................................................................................................................................................	18	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GTGGAATACTCCCCGGTAAAGATCAA........	26	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TTCGTTGAATACTTCACGGTA................	21	3	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................GGAATACTCCCCGGTAAAGATCAATAGT....	28	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................ACGGTGACAGGTTGTTAATGTCCATGAC........................................................................................................................................................................	28	0	6	0.33	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TTGCCACCTCTGCCTTCG.................................................................................................	18	2	4	0.25	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................GTGAAGTGGTGATGGCGG..........................................	18	2	5	0.20	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................CGGTGACAGGTTGTTAATGTCCATGAC........................................................................................................................................................................	27	0	6	0.17	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................CAACGGTGACAGGTTGTTAAT.................................................................................................................................................................................	21	0	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................GGTGACAGGTTGTTAATGTCCATGAC........................................................................................................................................................................	26	0	6	0.17	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................GGTGACAGGTTGTTAATGTCCATGACA.......................................................................................................................................................................	27	0	6	0.17	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GTTTGATGCCGTACGGTGTGA........................................................	21	0	7	0.14	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................TCCATGACAGACTGCACGTAACT.........................................................................................................................................................	23	0	8	0.13	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................GACAGGTTGTTAATGTCCAT...........................................................................................................................................................................	20	0	8	0.13	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................AAGTTGTTAAAGTGCATGACA.......................................................................................................................................................................	21	3	20	0.10	2	0	0	0	0	0	0	0	0	0	1	0	0	0	1
...............................................................AGGTTGTTAAAGTGCATGA.........................................................................................................................................................................	19	2	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................GTTGTTAATGTGCATGAAA.......................................................................................................................................................................	19	2	15	0.07	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................TTGTTAATGTGCATGAAA.......................................................................................................................................................................	18	2	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......CAGAATTTTCGCTAAACATG................................................................................................................................................................................................................................	20	3	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TCAACGGGGAAAGGTTGTTA...................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................CCGTCCCTGCCTTAGA................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..............................................................................................................................................................................................................CGGCGAGATTCGTGGTAA...........................	18	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12878:8899-9149 +	dvi_8173	TCAACCTGCCTAAAAAGCGATTTGAACATATCCATATTGATTTAATTGGCCCTGTTGCCACTGTCCAACAATTACAGGTACTGTCTGACGTGCATTGACCGGTTCTCACGCTGGCCGGCGGCAGTCCCAATA----ACATAACGGCAGAGACGGAAGCTAAATTGCATG------TTTGGATTGCAAACTACGGCATGCCACACTTCACAGCTACCGCCGCTCAAAGCACCTTATGAGGGGCCATTTCTAGTTATCAGCCG
droMoj3	scaffold_6541:89127-89279 +		ACGCACTCACATCTCAACGATTCGAACATATTAACTTGGATCTGATTGGACC-ACTACCTCAATCAGGACAATACAGATACTGTCTCACTATCATCGATCGCTACACCAAGTGGCCAGAAGCCGTACCTATCGAAGATATACAAGCAGAGACAG-----------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004569:22038-22190 +		TACCCGTTCCGGATAACAGATTCGACCACGTGCACTTGGACATCATAGT----AATGCCTTACTATCAAAACTTCCGCTACTGCCTAACGATGATCGACCGATTTTCACGTTGGCCCGAAGCTGTC--TCTCACTGACATCACTGCAGAGACAATTGCA------------------------------------------------------------------------------------------------------
dp5	Unknown_group_2:24856-25003 +		TCACCGTCCCCGATGGCAGGTTTGATCACATACATCTAGACATTGTTG---T-GATGCCCTTTGTTGACGGATACAAATATTGTCTGACAATGATTGACCGTTTTTCCCGCTGGCCGGAGGCTGTGCCGCTGAAGGATATGACTGCAGAGAC-------------------------------------------------------------------------------------------------------------
droPer2	scaffold_59:139997-140219 +		TCACCGTCCCCGATGACAGGTTTGATCACATACATCTAGACATTGGT---GT-GATGCCCTTTGTTGACGGATACAAATATTGTCAGACAATGATTGACCGTTTTTCCCGCTGGCCGGAGGCGGTGCCTCTGAAGGATATGACTGCAGAGACCATATGTGAAGCAATATGGTCGCGATGAATATCACGTTTTGAATGTCCCTT---GACTATTACAACCGATCAAGGTAC-------------------------------
droAna3	scaffold_13756:33069-33282 -		ATGCCGCCAGCGACGCCCGTTTCGAACACATCAATATCGACATCGTTGGCCC-ACTGCCATCATCGAACGGATACCGATACTGCCTCACGTGTATCGATCGTTTCTCAAGATGGCCCGCAGCAATCCCTTTAGTCGACATCACAGCACAATCTGTGGCCAACGCTCTTATTTCGGGCTGGTTCGCTCTGTACGGTATCCCTCT---CGACATCACAAC-------------------------------------------
droBip1	scf7180000393686:15697-15912 -		ACACCGCCAGCGACGCCCGTTTCGAACACATAAATATCGACATAGTCGGCCC-GCTGCCTTCATCGAACGGATACCGATACTGCCTCACGTGTATCGATCGTTTCTCAAGATGGCCCGCAGCAATTCCTTTAGTAGACATCACAGCACAATCTTTAGCTAACGCACTGATAACGGGCTGGTTCGCTCAGTACGGTATTCCTCT---CCACATCACAACCG-----------------------------------------
droKik1	scf7180000299059:7877-8033 +		TCACGCTTCCTACTCAAAGATTTGACCACATCAATCTGGATCTCATCGGACC-ATTACCCCAATCAGGTCAATATAGATACTGCTTAACAATCATTGACCGTTATACACGTTGGCCGGAAGCCATCGCAATCGAGGACATGCACGCCAACACGGTAGC-------------------------------------------------------------------------------------------------------
droFic1	scf7180000453919:4549-4762 +		ATGTCGCCAGCGACGCCCGTTTCGAACACATCAACATCGACATCGTTGGCCC-ACTGCCATCTTCGAACGGATACCGATACTGCTTGACGTGTATCGATCGCTTCTCAAGATGGCCCGCAGCAATTCCCTTAGTCGACATCACAGCACAATCTGTAGCCAACCCGCTGATTTCGGGCTGGTTCGCTCAGTACGGAATCCTTCT---CCACATCACAAC-------------------------------------------
droEle1	scf7180000489069:48481-48638 +		TCACAGTTCCCAGCGACAGATTCAACCATGTTCATCTGGACATCGTCAT----CATGCCGTTCCATCAAAACTTTCGGTACTGCCTTACCATGATAGACAGATTTACTCGCTGGCCGGAGGCTGTCCCTCTTACAAACATATCGGCTGATACGGTGGCTAAA---------------------------------------------------------------------------------------------------
droRho1	scf7180000766317:1880-2078 +		TCGACGTGCCCGATGCCCGATTCCAACACATCAATATAGACCTGATCGGCCC-GCTACCACCGTCCAATGGTTACCGCTACTGTTTGACGGTCATCGACCGATTCAGCAGATGGCCAGCTGTATTACCAGTGACTGAGATGACTGCCGAAGAGGTGGCACTCGCACGCCTGCACGGATGGATCGCACATTATGGAGTGCC-------------------------------------------------------------
droBia1	scf7180000302398:356-476 -		TTACGCTTCCTTCACAAAGATTCCACCACATCGATCTGGACCTCATCGGACC-ATTACCCCAATCAGGTCAATATAGATACTGTTTAACAATCATTGACCGTTATACACGTTAGCCAGAAGC-------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000412786:1868-2102 +		TACACGTTCCAAGCGGAAGATTCGATCATGTACATCTGGACATAGTAA---T-AATGCCAGCATATCAGAATTTCCGCTACTGTCTCACAATGATCGATCGCTTCTCACGTTGGCCTGAAGCTATACCACTAACCAACATTACCGCAGAAACGATTGCCACCGCCTTTTGGACCCACTGGATTTCACGATTTGGCGCCCCAAA---GACGATTACTACTGATCAGGGAACCCAGTTTGAGGC-------------------
droYak3	v2_chrUn_006:82007-82229 -		TCGCTGTGCCAAAATAAAGATTCGACCACGACCACCTGGATATAGTTGT----CATGCTTTCACAAAATAAATACCGCTATTGTCTTACCATGATTGACCGTTTCTCGCGATGGCCGAAAGCAGTACCACTCACTCATATCACGGCCGATACGATAGCCATGGCGTGCTGAACACACTGGATATCACGTTTTGGATCACCCAA---AACAATCATCACTGATCAAGGCAC-------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TCAACCTGCCTAAAAAGCGATTTGAACATATCCATATTGATTTAATTGGCCCTGTTGCCACTGTCCAACAATTACAGGTACTGTCTGACGTGCATTGACCGGTTCTCACGCTGGCCGGCGGCAGTCCCAATA----ACATAACGGCAGAGACGGAAGCTAAATTGCATG------TTTGGATTGCAAACTACGGCATGCCACACTTCACAGCTACCGCCGCTCAAAGCACCTTATGAGGGGCCATTTCTAGTTATCAGCCG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................CCACTGTCCAACAATTACAGG.......................................................................................................................................................................................	21	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................CGCTGGCCGGCGGCAGTCCCA....................................................................................................................................	21	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................ATTACAGGTACTGTCTGACGTGC........................................................................................................................................................................	23	7	0.14	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................TTGGATTGCAAACTACGGCATC...............................................................	22	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................ATTACAGGTACTGTCTGACGTGCATC.....................................................................................................................................................................	26	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................TACAGGTACTGTCTGACGTGC........................................................................................................................................................................	21	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TTACAGGTACTGTCTGACGT..........................................................................................................................................................................	20	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................TACTGTCTGACGTGCATTGACCC................................................................................................................................................................	23	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ACAGGTACTGTCTGACGTGCATC.....................................................................................................................................................................	23	8	0.13	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ACGCACTCACATCTCAACGATTCGAACATATTAACTTGGATCTGATTGGACC-ACTACCTCAATCAGGACAATACAGATACTGTCTCACTATCATCGATCGCTACACCAAGTGGCCAGAAGCCGTACCTATCGAAGATATACAAGCAGAGACAG-----------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................ACAGATACTGTCTCACTATCATCG....................................................................................................................................................................	24	1	5.00	5	5	0	0	0	0	0
.........................................................................ACAGATACTGTCTCACTATCATCGATC.................................................................................................................................................................	27	1	4.00	4	3	0	0	0	1	0
.........................................................................ACAGATACTGTCTCACTATCATCGA...................................................................................................................................................................	25	1	3.00	3	3	0	0	0	0	0
.........................................................................ACAGATACTGTCTCACTATCATCGAT..................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
.........................................................................ACAGATACTGTCTCACTATCATCGATCG................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.........................................................................ACAGATACTGTCTCACTATCATC.....................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
..................GATTCGAACATATTAACTTGGATC...........................................................................................................................................................................................................................	24	3	0.33	1	1	0	0	0	0	0
..................GATTCGAACATATTAACTTGGAT............................................................................................................................................................................................................................	23	3	0.33	1	1	0	0	0	0	0
..................GATTCGAACATATTAACTTGGATCTG.........................................................................................................................................................................................................................	26	3	0.33	1	1	0	0	0	0	0
..................GATTCGAACATATTAACTTGGATCTGA........................................................................................................................................................................................................................	27	3	0.33	1	1	0	0	0	0	0
..................GATTCGAACATATTAACTTGGA.............................................................................................................................................................................................................................	22	3	0.33	1	1	0	0	0	0	0
..............................TTAACTTGGATCTGATTGGAC..................................................................................................................................................................................................................	21	4	0.25	1	1	0	0	0	0	0
.............................................................................................................AGTGGCCAGAAGCCGTACCTATCGC...............................................................................................................................	25	6	0.17	1	1	0	0	0	0	0
......................................................................................................TACACCAAGTGGCCAGAAGCCGTACCTC...................................................................................................................................	28	6	0.17	1	1	0	0	0	0	0
......................................................................................................TACACCAAGTGGCCAGAAGCCGTACCT....................................................................................................................................	27	6	0.17	1	1	0	0	0	0	0
......TCACATCTCAACGATTCGAACATA.......................................................................................................................................................................................................................................	24	7	0.14	1	1	0	0	0	0	0

droWil2

TACCCGTTCCGGATAACAGATTCGACCACGTGCACTTGGACATCATAGT----AATGCCTTACTATCAAAACTTCCGCTACTGCCTAACGATGATCGACCGATTTTCACGTTGGCCCGAAGCTGTC--TCTCACTGACATCACTGCAGAGACAATTGCA------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................ACCACGTGCACTTGGACATCATA......................................................................................................................................................................................................................	23	7	0.43	3	0	3	0	0	0
........CCGGATAACAGATTCGACCACGTGCACT.................................................................................................................................................................................................................................	28	5	0.40	2	0	1	0	1	0
.................................................................................................................................CTCACTGACATCACTGCAGAGACA............................................................................................................	24	6	0.33	2	0	2	0	0	0
............................................................................................GATCGACCGATTTTCACGTTGGCC.................................................................................................................................................	24	7	0.29	2	0	2	0	0	0
........................ACCACGTGCACTTGGACATCATAGT----AA..............................................................................................................................................................................................................	27	7	0.29	2	0	2	0	0	0
.....GTTCCGGATAACAGATTCGACC..........................................................................................................................................................................................................................................	22	5	0.20	1	0	1	0	0	0
........CCGGATAACAGATTCGACCACGTG.....................................................................................................................................................................................................................................	24	5	0.20	1	0	1	0	0	0
..............AACAGATTCGACCACGTGCACTTGGACA...........................................................................................................................................................................................................................	28	5	0.20	1	0	0	0	1	0
.......TCCGGATAACAGATTCGACCACGTGCA...................................................................................................................................................................................................................................	27	5	0.20	1	0	1	0	0	0
..........GGATAACAGATTCGACCACGTGCACT.................................................................................................................................................................................................................................	26	5	0.20	1	0	1	0	0	0
..........GGATAACAGATTCGACCACGTG.....................................................................................................................................................................................................................................	22	5	0.20	1	0	1	0	0	0
...............ACAGATTCGACCACGTGCACTTG...............................................................................................................................................................................................................................	23	5	0.20	1	0	1	0	0	0
...CCGTTCCGGATAACAGATTCGACC..........................................................................................................................................................................................................................................	24	5	0.20	1	1	0	0	0	0
...............ACAGATTCGACCACGTGCACT.................................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0
.....GTTCCGGATAACAGATTCGACCACGTG.....................................................................................................................................................................................................................................	27	5	0.20	1	0	1	0	0	0
..................................................................................................................................TCACTGACATCACTGCAGAG...............................................................................................................	20	6	0.17	1	0	1	0	0	0
......................CGACCACGTGCACTTGGACATCATAG.....................................................................................................................................................................................................................	26	6	0.17	1	0	0	0	1	0
.................AGATTCGACCACGTGCACTTGG..............................................................................................................................................................................................................................	22	6	0.17	1	0	1	0	0	0
..........................................................................................................................................ATCACTGCAGAGACAATTGCA------------------------------------------------------------------------------------------------------	21	6	0.17	1	0	0	0	1	0
......................................................................................AACGATGATCGACCGATTTTCACGT......................................................................................................................................................	25	6	0.17	1	0	0	0	1	0
.................................................................................................................................CTCACTGACATCACTGCAGAGAC.............................................................................................................	23	6	0.17	1	0	1	0	0	0
.................................................................................................................................CTCACTGACATCACTGCAGAGA..............................................................................................................	22	6	0.17	1	0	1	0	0	0
....................................................................................................................................ACTGACATCACTGCAGAGACAAT..........................................................................................................	23	6	0.17	1	0	0	0	1	0
.....................................................................................................................................CTGACATCACTGCAGAGACAATT.........................................................................................................	23	6	0.17	1	0	1	0	0	0
...................................TTGGACATCATAGT----AATGCCTTACTAT...................................................................................................................................................................................................	27	7	0.14	1	0	1	0	0	0
........................ACCACGTGCACTTGGACATCATAG.....................................................................................................................................................................................................................	24	7	0.14	1	0	1	0	0	0
..................................................................................................CCGATTTTCACGTTGGCCCGAAGC...........................................................................................................................................	24	7	0.14	1	0	1	0	0	0
.....................................................................................................ATTTTCACGTTGGCCCGAAGCTGT........................................................................................................................................	24	7	0.14	1	0	1	0	0	0
.........................................................................................................TCACGTTGGCCCGAAGCTGTC--.....................................................................................................................................	21	7	0.14	1	0	1	0	0	0
......................................GACATCATAGT----AATGCCTTACTAT...................................................................................................................................................................................................	24	7	0.14	1	0	1	0	0	0
.....................................................................................................ATTTTCACGTTGGCCCGAAGC...........................................................................................................................................	21	7	0.14	1	0	0	0	1	0
........................................................................................................TTCACGTTGGCCCGAAGCTG.........................................................................................................................................	20	7	0.14	1	0	1	0	0	0
................................................................................CTGCCTAACGATGATCGACCGATT.............................................................................................................................................................	24	14	0.14	2	0	0	1	1	0
..................................................................................................CCGATTTTCACGTTGGCCCGAAG............................................................................................................................................	23	7	0.14	1	0	1	0	0	0
........................ACCACGTGCACTTGGACATCAT.......................................................................................................................................................................................................................	22	7	0.14	1	0	0	0	1	0
.................................................................................TGCCTAACGATGATCGACCGATT.............................................................................................................................................................	23	14	0.14	2	0	2	0	0	0
..................................................................................................CCGATTTTCACGTTGGCCCGAAGCT..........................................................................................................................................	25	7	0.14	1	0	1	0	0	0
........................................CATCATAGT----AATGCCTTACTATC..................................................................................................................................................................................................	23	7	0.14	1	0	1	0	0	0
.......................................................................................................TTTCACGTTGGCCCGAAGCTGTC--.....................................................................................................................................	23	7	0.14	1	0	1	0	0	0
..................................................................................................CCGATTTTCACGTTGGCCCGAAGCTGT........................................................................................................................................	27	7	0.14	1	0	0	0	1	0
...........................................................................CGCTACTGCCTAACGATGATCGACCGAT..............................................................................................................................................................	28	13	0.08	1	0	1	0	0	0
................................................................................CTGCCTAACGATGATCGACCG................................................................................................................................................................	21	14	0.07	1	0	0	0	1	0
.............................................................................CTACTGCCTAACGATGATCGAC..................................................................................................................................................................	22	14	0.07	1	0	1	0	0	0
..............................................................................TACTGCCTAACGATGATCGACCGATTT............................................................................................................................................................	27	14	0.07	1	0	1	0	0	0

dp5

TCACCGTCCCCGATGGCAGGTTTGATCACATACATCTAGACATTGTTG---T-GATGCCCTTTGTTGACGGATACAAATATTGTCTGACAATGATTGACCGTTTTTCCCGCTGGCCGGAGGCTGTGCCGCTGAAGGATATGACTGCAGAGAC-------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................................................................TGACCGTTTTTCCCGCTGGCCGGAGG............................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................TTGACCGTTTTTCCCGCTGGCCGGAGG............................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0

droPer2

TCACCGTCCCCGATGACAGGTTTGATCACATACATCTAGACATTGGT---GT-GATGCCCTTTGTTGACGGATACAAATATTGTCAGACAATGATTGACCGTTTTTCCCGCTGGCCGGAGGCGGTGCCTCTGAAGGATATGACTGCAGAGACCATATGTGAAGCAATATGGTCGCGATGAATATCACGTTTTGAATGTCCCTT---GACTATTACAACCGATCAAGGTAC-------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................CGGATACAAATATTGTCAGACAATGA.......................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.............TGACAGGTTTGATCACATACATCTAGACA...........................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................AAGGATATGACTGCAGAGACCATATG.......................................................................................................	26	3	1.00	3	0	3	0	0	0	0
....................................................................................................................................AAGGATATGACTGCAGAGACCAT..........................................................................................................	23	4	0.50	2	0	2	0	0	0	0
....................................................................................................................................AAGGATATGACTGCAGAGACCATATGT......................................................................................................	27	3	0.33	1	0	1	0	0	0	0
..................................................................................................................................TGAAGGATATGACTGCAGAGACCA...........................................................................................................	24	3	0.33	1	0	1	0	0	0	0
....................................................................................................................................AAGGATATGACTGCAGAGACCATAA........................................................................................................	25	4	0.25	1	0	1	0	0	0	0
.....................................................................................................................................AGGATATGACTGCAGAGACCAT..........................................................................................................	22	4	0.25	1	0	1	0	0	0	0

droAna3

ATGCCGCCAGCGACGCCCGTTTCGAACACATCAATATCGACATCGTTGGCCC-ACTGCCATCATCGAACGGATACCGATACTGCCTCACGTGTATCGATCGTTTCTCAAGATGGCCCGCAGCAATCCCTTTAGTCGACATCACAGCACAATCTGTGGCCAACGCTCTTATTTCGGGCTGGTTCGCTCTGTACGGTATCCCTCT---CGACATCACAAC-------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................TTTAGTCGACATCACAGCACAATCTGTG.........................................................................................................	28	9	0.22	2	2	0	0	0	0	0
..................................................................................................................................TAGTCGACATCACAGCACAATCTGTGG........................................................................................................	27	20	0.15	3	2	1	0	0	0	0
..................................................................................................................................TAGTCGACATCACAGCACAATCTGT..........................................................................................................	25	20	0.15	3	3	0	0	0	0	0
...............................................................................................................................CTTTAGTCGACATCACAGCACAATCTGT..........................................................................................................	28	9	0.11	1	1	0	0	0	0	0
................................................................................................................................TTTAGTCGACATCACAGCACAATCTG...........................................................................................................	26	9	0.11	1	1	0	0	0	0	0
...........................................................ATCATCGAACGGATACCGATACTGCC................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0
...............................................................................................................................CTTTAGTCGACATCACAGCACA................................................................................................................	22	20	0.10	2	2	0	0	0	0	0
..................................................................................................................................TAGTCGACATCACAGCACAATCTGTG.........................................................................................................	26	20	0.10	2	1	0	1	0	0	0
........................AACACATCAATATCGACATCGTTGGC...................................................................................................................................................................................................................	26	12	0.08	1	1	0	0	0	0	0
.......................GAACACATCAATATCGACATCGTTGG....................................................................................................................................................................................................................	26	14	0.07	1	1	0	0	0	0	0
.......................GAACACATCAATATCGACATCGTTG.....................................................................................................................................................................................................................	25	18	0.06	1	0	1	0	0	0	0
.......................GAACACATCAATATCGACATCGTT......................................................................................................................................................................................................................	24	18	0.06	1	1	0	0	0	0	0
................................................GCCC-ACTGCCATCATCGAACGGATACCG........................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
..............................................................ATCGAACGGATACCGATACTGCC................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................TAGTCGACATCACAGCACAATCTGTGGC.......................................................................................................	28	20	0.05	1	1	0	0	0	0	0
..................................TATCGACATCGTTGGCCC-ACTGCCATC.......................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
..................................TATCGACATCGTTGGCCC-ACTGCCAT........................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................CATCACAGCACAATCTGTGGC.......................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................TTAGTCGACATCACAGCACAATCTGTGGC.......................................................................................................	29	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................TCGACATCACAGCACAATCTGTGGCC......................................................................................................	26	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................CGACATCACAGCACAATCTGTGGC.......................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................TTAGTCGACATCACAGCACAATCTGTGG........................................................................................................	28	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................AATCCCTTTAGTCGACATCACAGCAC.................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.......................................................................................................TCTCAAGATGGCCCGCAGCAATCCC.....................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................ATCACAGCACAATCTGTGGC.......................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.....................................CGACATCGTTGGCCC-ACTGCCATC.......................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................TAGTCGACATCACAGCACAATCTG...........................................................................................................	24	20	0.05	1	1	0	0	0	0	0
............................................................................................................................TCCCTTTAGTCGACATCACAGCACAATC.............................................................................................................	28	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................CTTTAGTCGACATCACAGCACAAT..............................................................................................................	24	20	0.05	1	1	0	0	0	0	0
...............................CAATATCGACATCGTTGGCCC-................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0

droBip1

ACACCGCCAGCGACGCCCGTTTCGAACACATAAATATCGACATAGTCGGCCC-GCTGCCTTCATCGAACGGATACCGATACTGCCTCACGTGTATCGATCGTTTCTCAAGATGGCCCGCAGCAATTCCTTTAGTAGACATCACAGCACAATCTTTAGCTAACGCACTGATAACGGGCTGGTTCGCTCAGTACGGTATTCCTCT---CCACATCACAACCG-----------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCACGCTTCCTACTCAAAGATTTGACCACATCAATCTGGATCTCATCGGACC-ATTACCCCAATCAGGTCAATATAGATACTGCTTAACAATCATTGACCGTTATACACGTTGGCCGGAAGCCATCGCAATCGAGGACATGCACGCCAACACGGTAGC-------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATGTCGCCAGCGACGCCCGTTTCGAACACATCAACATCGACATCGTTGGCCC-ACTGCCATCTTCGAACGGATACCGATACTGCTTGACGTGTATCGATCGCTTCTCAAGATGGCCCGCAGCAATTCCCTTAGTCGACATCACAGCACAATCTGTAGCCAACCCGCTGATTTCGGGCTGGTTCGCTCAGTACGGAATCCTTCT---CCACATCACAAC-------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCACAGTTCCCAGCGACAGATTCAACCATGTTCATCTGGACATCGTCAT----CATGCCGTTCCATCAAAACTTTCGGTACTGCCTTACCATGATAGACAGATTTACTCGCTGGCCGGAGGCTGTCCCTCTTACAAACATATCGGCTGATACGGTGGCTAAA---------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCGACGTGCCCGATGCCCGATTCCAACACATCAATATAGACCTGATCGGCCC-GCTACCACCGTCCAATGGTTACCGCTACTGTTTGACGGTCATCGACCGATTCAGCAGATGGCCAGCTGTATTACCAGTGACTGAGATGACTGCCGAAGAGGTGGCACTCGCACGCCTGCACGGATGGATCGCACATTATGGAGTGCC-------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTACGCTTCCTTCACAAAGATTCCACCACATCGATCTGGACCTCATCGGACC-ATTACCCCAATCAGGTCAATATAGATACTGTTTAACAATCATTGACCGTTATACACGTTAGCCAGAAGC-------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TACACGTTCCAAGCGGAAGATTCGATCATGTACATCTGGACATAGTAA---T-AATGCCAGCATATCAGAATTTCCGCTACTGTCTCACAATGATCGATCGCTTCTCACGTTGGCCTGAAGCTATACCACTAACCAACATTACCGCAGAAACGATTGCCACCGCCTTTTGGACCCACTGGATTTCACGATTTGGCGCCCCAAA---GACGATTACTACTGATCAGGGAACCCAGTTTGAGGC-------------------	Size	Hit Count	Total Norm	Total
No Reads

droYak3

TCGCTGTGCCAAAATAAAGATTCGACCACGACCACCTGGATATAGTTGT----CATGCTTTCACAAAATAAATACCGCTATTGTCTTACCATGATTGACCGTTTCTCGCGATGGCCGAAAGCAGTACCACTCACTCATATCACGGCCGATACGATAGCCATGGCGTGCTGAACACACTGGATATCACGTTTTGGATCACCCAA---AACAATCATCACTGATCAAGGCAC-------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........................................................................CGCTATTGTCTTACCATGATTGACCG................................................................................................................................................................	26	4	1.00	4	0	4	0	0	0	0	0	0	0	0	0
TCGCTGTGCCAAAATAAAGATTCGAC...........................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TCACCCAA---AACAATCATCACTGATCA.....................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................CGCTATTGTCTTACCATGATTGACC.................................................................................................................................................................	25	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................CGCTATTGTCTTACCATGATTG....................................................................................................................................................................	22	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TATCACGGCCGATACGATAGCCATGGCG................................................................................................	28	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0

-16.8	-16.1	-16.0	-16.0

dvi_8173

scaffold_12878:8949-9099 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads