dvi_8074

exon [dvir_GLEANR_7739:2]; CDS [Dvir\GJ22455-cds]; CDS [Dvir\GJ22455-cds]; exon [dvir_GLEANR_7739:1]; intron [Dvir\GJ22455-in]

Sense Strand Reads

Anti-sense strand reads

##################################################-------------------------------------------------------------------------------################################################## GTGCATTTTGCTTTTGGCATTTCTGGTTCTGATTGCAGCGGCGCCCGCCGGTAAGACCACTTGATAAAGACGCCTCTTTAGTTAGCATATTATTAATATGTGTGTATATATATGTTTGCTTTCGTGCAGGTCAGATACGCGTACGCACCTCCTCGACCAGACACGTGCGTGTGCGCAAC ************************************************.........((.......................((((......(((((((((....))))))))).......))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M027 male body	SRR060668 160x9_males_carcasses_total	SRR060671 9x160_males_carcasses_total	M047 female body	SRR060681 Argx9_testes_total	SRR060662 9x160_0-2h_embryos_total	SRR060666 160_males_carcasses_total	M028 head	V053 head	V047 embryo
...........................................CCCGCCGGTAAGACCACTTGATAAAGAC............................................................................................................	28	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
.................CATTTCTGGTTCTGATTGCAGCGG..........................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................AGATACGCGTACGCACCTCC...........................	20	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................CTTGATCAAGACGCCTGGTT....................................................................................................	20	3	4	0.25	1	0	0	0	1	0	0	0	0	0	0
...............................ATTGCAGCGGCGCCCGGCGGC...............................................................................................................................	21	2	8	0.25	2	2	0	0	0	0	0	0	0	0	0
..........................TGCTGATTGCATCGGCGC.......................................................................................................................................	18	2	6	0.17	1	0	0	0	0	1	0	0	0	0	0
..........CTTTTGGCATTCCTGGTTGTC....................................................................................................................................................	21	3	7	0.14	1	0	0	0	0	0	1	0	0	0	0
...........................................ACCGCTGGTAAGACCACCT.....................................................................................................................	19	3	7	0.14	1	0	0	0	0	0	0	1	0	0	0
........................................................CCAGTTGGTATAGACGCCT........................................................................................................	19	3	13	0.08	1	0	0	0	0	0	0	0	1	0	0
......................CTGGTCCTCGTTGCAGCGGC.........................................................................................................................................	20	3	14	0.07	1	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................GCGTCCGCACCCCCCCGA.......................	18	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1

CACGTAAAACGAAAACCGTAAAGACCAAGACTAACGTCGCCGCGGGCGGCCATTCTGGTGAACTATTTCTGCGGAGAAATCAATCGTATAATAATTATACACACATATATATACAAACGAAAGCACGTCCAGTCTATGCGCATGCGTGGAGGAGCTGGTCTGTGCACGCACACGCGTTG ************************************************.........((.......................((((......(((((((((....))))))))).......))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060685 9xArg_0-2h_embryos_total	SRR060687 9_0-2h_embryos_total	M047 female body
.................................................................................................................CAATGGAAAGCACGTCCAGCC.............................................	21	3	1	1.00	1	1	0	0
.................................................................................................................CAATGGAAAGCACGCCCAG...............................................	19	3	13	0.08	1	0	1	0
.......................................CCGGGGGTGGCCATTATG..........................................................................................................................	18	3	20	0.05	1	0	0	1

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droVir3	scaffold_12875:20003889-20004067 +	dvi_8074	GTGCATTTTGCTTTTGGCATTTCTGGTTCTGATTGCAGCGGCGCCCGCCGGTAAGACCACTTGATAA---------------------AGACGCCTCTTTAGTTAGCATATT-----------------------ATTAATATGTGTGTATATATATGTTTGCTTTCG----TGCAGG--------------TCAGATACGCGTACGCACCTCCTCGACCAGACACGTGCGTGTGCGCAAC
droMoj3	scaffold_6496:6190644-6190816 -		GTGCGTTTTAATGCTGGCTTTGCTGGGTCTGATTGCTGCGGCGCCTGCGGGTAAGA-----------------------------------GTGTTATA----TACT----TATATAGAATATACCAATTAATATATAATT-------------------AATTATCA----TTTATATTCA--TATTCAGGTCAAATACGTGTGCGCACCTCCTCCACAACGAAAATTCATGTGCGCAAT
droGri2	scaffold_15245:11530062-11530259 -		GTGTGTTTTGCTGCTTGCGTTGCTTGGCGTACTTGAAGCGGCACCTGCCGGTAAGTAGACGCACTACAAAAGACTCG-----------AGCGAGTTCTTTGCTGATTAT----------------------------ATATATATATATGTGTGTGTATGTCTCTAAATGTATGTGT----ATTTCTGCAGGTCAAATACGTGTGCGCACCTCGTCGACGACCAAGGTACATGTGCGAAAT
droWil2	scf2_1100000004511:979950-980017 -		ATGA------------------------------------------------------------------------------------AAATGCGTTTATATTGATTGTCGT-----------------------GTGTGTGTGTGTGTATATATATGTGTGTGTGTG----TGCGTG----T----------------------------------------------------------
dp5	Unknown_group_247:42508-42562 +		ATAA------------------------------------------------------------------------------------GAAAAACTATATAGTAAATATATA-----------------------ATATATATATGTATATATATATATATG-------------------------------------------------------------------------------
droPer2	scaffold_1:9217932-9217996 +		TACT---------------------------------------------------------------------------------------------AC--------------------------------------TAGTGTGTGTGTGTGTGTGTGTGTCCCTGTGTGTGTGTGT----GTT--------------GCAAAGACGCGCCCCC---------------------------
droAna3	scaffold_12613:406270-406332 -		CCTC---------------------------------------------------------------------------------------------TTTCACTAGGATATG-----------------------GTATGTGTGTGTGTGTGTGTGTGTGTGTTTGGT----TGTGTG--TGTC------------A--------------------------------------------
droBip1	scf7180000393070:2274-2333 +		ATTT---------------------------------------------------------------------------------------------TT---------------------------------------TATATATTTGTATATAATTTTTTATTTCGG----TGTAGTTC--------------CGAAACAAAAACACAC-------------------------------
droKik1	scf7180000302660:95742-95794 -		TTTA---------------------------------------------------------------------------------------------GT----TTTCATGAT-----------------------ATACACATATGTATATGCATATATATACTTGCA----TGTAG----------------------------------------------------------------
droFic1	scf7180000453866:2351-2400 +		CCCC---------------------------------------------------------------------------------------------CCTAGTTACGCCACT-----------------------GTATACATATATGCATATATATGTTTGTTTT---------------------------------------------------------------------------
droEle1	scf7180000491063:6910-6952 +		TTTG---------------------------------------------------------------------------------------------TT----TAGCATACT-----------------------TTTATTATGTGCGTATAAAAAAATTTGC------------------------------------------------------------------------------
droRho1	scf7180000779513:76877-76932 -		TTTA---------------------------------------------------------------------------------------------TA----TATTATATG-----------------------ATAGATACATATATATATATTTGTTGGTTCTGA----TGTAGATC-------------------------------------------------------------
droBia1	scf7180000302261:1987883-1987887 -		GCAA---------------------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415863:17375-17431 +		TTAA---------------------------------------------------------------------------------------------T-----TAGTG-CTT-----------------------ATAATTATTTATGTATGTATATGTTTTTTTCCA----TTCAGC--------------TTAGA--------------------------------------------
droEug1	scf7180000409251:39431-39477 +		TAT--------------------------------------------------------------------------------------------------------------------------------------ATATATATATATATATATATGAATGTTTTCA----TGTATGTCCGCT------------A--------------------------------------------
droSec2	scaffold_1:7826326-7826360 -		TAGT---------------------------------------------------------------------------------------------AA--------------------------------------TAATATGTGTAAAAATATATGTTCACTTT---------------------------------------------------------------------------
droYak3	2L:20986885-20986973 +		TCCGCTTCTG-------CATTTCAGC---TGAA-----------------------------------------TCCATTGAACTTGGTAATGGCTTTAAA--TTATACATT-----------------------TTTATAATATATGTATATATATGTATGCTT----------------------------------------------------------------------------
droEre2	scaffold_4845:531228-531276 +		CCTT---------------------------------------------------------------------------------------------TATGGTCATTATATT-----------------------ATATATATCTATATAAATATATATTTTTTT----------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

GTGCATTTTGCTTTTGGCATTTCTGGTTCTGATTGCAGCGGCGCCCGCCGGTAAGACCACTTGATAA---------------------AGACGCCTCTTTAGTTAGCATATT-----------------------ATTAATATGTGTGTATATATATGTTTGCTTTCG----TGCAGG--------------TCAGATACGCGTACGCACCTCCTCGACCAGACACGTGCGTGTGCGCAAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................CCCGCCGGTAAGACCACTTGATAA---------------------AGAC.....................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CATTTCTGGTTCTGATTGCAGCGG........................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AGATACGCGTACGCACCTCC...........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GTGCGTTTTAATGCTGGCTTTGCTGGGTCTGATTGCTGCGGCGCCTGCGGGTAAGA-----------------------------------GTGTTATA----TACT----TATATAGAATATACCAATTAATATATAATT-------------------AATTATCA----TTTATATTCA--TATTCAGGTCAAATACGTGTGCGCACCTCCTCCACAACGAAAATTCATGTGCGCAAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............GGCTTTGCTGGGTCTGATTGCTGCGG........................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................ATACGTGTGCGCACCTCCTC.........................	20	1	1.00	1	1	0	0	0	0	0

droGri2

GTGTGTTTTGCTGCTTGCGTTGCTTGGCGTACTTGAAGCGGCACCTGCCGGTAAGTAGACGCACTACAAAAGACTCG-----------AGCGAGTTCTTTGCTGATTAT----------------------------ATATATATATATGTGTGTGTATGTCTCTAAATGTATGTGT----ATTTCTGCAGGTCAAATACGTGTGCGCACCTCGTCGACGACCAAGGTACATGTGCGAAAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
......................CTTGGCGTACTTGAAGCGGCACCTG..................................................................................................................................................................................................	25	1	1.00	1	1	0
.............................................................................................................................................................................................................CGCACCTCGTCGACGACC..................	18	1	1.00	1	1	0
..........................GCGTACTTGAAGCGGCACCT...................................................................................................................................................................................................	20	1	1.00	1	1	0
.........GCTGCTTGCGTTGCTTGGCGTA..................................................................................................................................................................................................................	22	1	1.00	1	1	0
............GCTTGCGTTGCTTGGCGTACTTGAAGCG.........................................................................................................................................................................................................	28	1	1.00	1	1	0
.................CGTTGCTTGGCGTACTTG..............................................................................................................................................................................................................	18	1	1.00	1	1	0
.........GCTGCTTGCGTTGCTTGGCG....................................................................................................................................................................................................................	20	1	1.00	1	1	0
...............TGCGTTGCTTGGCGTACTT...............................................................................................................................................................................................................	19	1	1.00	1	1	0
...........................................................................................................................................................................................................................GACCAAGGTACATGTGCG....	18	1	1.00	1	1	0
..................................................................................................................................................................................................AAATACGTGTGCGCACCTCGTCGACG.....................	26	1	1.00	1	1	0

droWil2

ATGA------------------------------------------------------------------------------------AAATGCGTTTATATTGATTGTCGT-----------------------GTGTGTGTGTGTGTATATATATGTGTGTGTGTG----TGCGTG----T----------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................................................................................................ATGTGTGTGTGTG----TGCGTG----T----------------------------------------------------------	20	20	0.05	1	0	0	0	1	0

dp5

ATAA------------------------------------------------------------------------------------GAAAAACTATATAGTAAATATATA-----------------------ATATATATATGTATATATATATATATG-------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.TAA------------------------------------------------------------------------------------GAAAAACTATATAGTAAATATA...................................................................................................................................	25	9	0.33	3	0	2	0	0	0	0	0	1	0	0
..AA------------------------------------------------------------------------------------GAAAAACTATATAGTAAATAT....................................................................................................................................	23	9	0.11	1	0	1	0	0	0	0	0	0	0	0
..AA------------------------------------------------------------------------------------GAAAAACTATATAGTAAATATAT..................................................................................................................................	25	9	0.11	1	0	1	0	0	0	0	0	0	0	0
..AA------------------------------------------------------------------------------------GAAAAACTATATAGTAAATATA...................................................................................................................................	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................TATATGTATATATATATATATG-------------------------------------------------------------------------------	22	20	0.10	2	0	0	0	0	0	0	0	0	2	0

droPer2

TACT---------------------------------------------------------------------------------------------AC--------------------------------------TAGTGTGTGTGTGTGTGTGTGTGTCCCTGTGTGTGTGTGT----GTT--------------GCAAAGACGCGCCCCC---------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................................................................................................TGTGTGTGTGTGTGTGTCC..............................................................................	19	20	0.10	2	0	0	0	0	0	2
.........................................................................................................................................TAGTGTGTGTGTGTGTGTGTG...................................................................................	21	20	0.05	1	0	0	0	0	0	1
..............................................................................................................................................TGTGTGTGTGTGTGTGTGTCC..............................................................................	21	20	0.05	1	0	0	0	0	0	1

droAna3

CCTC---------------------------------------------------------------------------------------------TTTCACTAGGATATG-----------------------GTATGTGTGTGTGTGTGTGTGTGTGTGTTTGGT----TGTGTG--TGTC------------A--------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

ATTT---------------------------------------------------------------------------------------------TT---------------------------------------TATATATTTGTATATAATTTTTTATTTCGG----TGTAGTTC--------------CGAAACAAAAACACAC-------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTTA---------------------------------------------------------------------------------------------GT----TTTCATGAT-----------------------ATACACATATGTATATGCATATATATACTTGCA----TGTAG----------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCCC---------------------------------------------------------------------------------------------CCTAGTTACGCCACT-----------------------GTATACATATATGCATATATATGTTTGTTTT---------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTTG---------------------------------------------------------------------------------------------TT----TAGCATACT-----------------------TTTATTATGTGCGTATAAAAAAATTTGC------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTTA---------------------------------------------------------------------------------------------TA----TATTATATG-----------------------ATAGATACATATATATATATTTGTTGGTTCTGA----TGTAGATC-------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCAA---------------------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTAA---------------------------------------------------------------------------------------------T-----TAGTG-CTT-----------------------ATAATTATTTATGTATGTATATGTTTTTTTCCA----TTCAGC--------------TTAGA--------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TAT--------------------------------------------------------------------------------------------------------------------------------------ATATATATATATATATATATGAATGTTTTCA----TGTATGTCCGCT------------A--------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droSec2

TAGT---------------------------------------------------------------------------------------------AA--------------------------------------TAATATGTGTAAAAATATATGTTCACTTT---------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

TCCGCTTCTG-------CATTTCAGC---TGAA-----------------------------------------TCCATTGAACTTGGTAATGGCTTTAAA--TTATACATT-----------------------TTTATAATATATGTATATATATGTATGCTT----------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

CCTT---------------------------------------------------------------------------------------------TATGGTCATTATATT-----------------------ATATATATCTATATAAATATATATTTTTTT----------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_8074

scaffold_12875:20003939-20004017 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads