dvi_7998

Name	Class	Family	Strand
Helitron-1N1_DVir	RC	Helitron	-
Helitron-1N1_DVir	RC	Helitron	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TTGCCCGTTAAAGAAACGCTGGAGCCGCAGTCGCCGCTGTTTCATATCAGGTAAGCGGCAAGCGATTGCTACACTTACAAACAAATTTTACTACATTTAAGAAAATCTTCGTAAAAGGAAATTTAATTTAACTTCAACACATTTTATTTATTATACCCTGAACCCATTAAAAATGGGTATAAAGGGTCTGTCCGTCTCTCCGTATGTATGAACGCGAGGATCTCAGAACCTATAAGAGCTAGAGACTTGAA ************************************************(((((.(((((....)))))...)))))....(((((((.((...((((.(((....))).)))))))))))))..............................(((((..(((((((...)))))))....)))))..............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060677 Argx9_ovaries_total	SRR060654 160x9_ovaries_total	SRR060679 140x9_testes_total	SRR060681 Argx9_testes_total	M047 female body	SRR060675 140x9_ovaries_total	SRR060680 9xArg_testes_total	V047 embryo	V116 male body
...........................................................AAGCGATTGATACACTCACCAAC.........................................................................................................................................................................	23	3	1	1.00	1	0	1	0	0	0	0	0	0	0
...........................................................AAGCGATTGATACACTCACCAACA........................................................................................................................................................................	24	3	1	1.00	1	0	0	1	0	0	0	0	0	0
.............................................................GCGATTGATACACTCACCAACAAAT.....................................................................................................................................................................	25	3	1	1.00	1	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................ATGTATGAACGCGGGGATCTC...........................	21	1	20	0.10	2	0	0	0	2	0	0	0	0	0
..........................................................................................................................................................................................................TATGTATGAAGGCGAGGATCTCAGAAC......................	27	1	20	0.05	1	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................TATGTATGAACGCGAGGATCTCAGAAC......................	27	0	20	0.05	1	0	0	0	0	0	0	0	0	1
........................................................................................................................................................................................................................AGGATCTCAGAACCTATAAGAG.............	22	0	20	0.05	1	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................GAACCTATAAGAGCTAGAGAC.....	21	0	20	0.05	1	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CTCAGAACCTATAAGAGCTA..........	20	0	20	0.05	1	0	0	0	0	0	1	0	0	0
..................................................................................AACTTTTCCTACATTTAA.......................................................................................................................................................	18	2	20	0.05	1	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................CTCAGAACCTATAAGAGCTAG.........	21	0	20	0.05	1	0	0	0	0	0	0	1	0	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12875:19646624-19646874 -	dvi_7998	TTGCCCGTTAAAGAAACGCTGGAGCCGCAGTCGCCGCTGTTTCATATCAGGTAAGCGGCAAGCGATTGCTACACTT--ACAAACAA-----AT---TT---TACTA-CATTTAAGAAAATCT-TC---------------------------------------GTAAAAGGA--AATT---TAAT-------------------------------------------------------TTA----------------------------------------------------------------------------ACTTCAACACATTTTATTTATTATA--------CCCTGAACCCAT----TAAAAATGGG------------TATA--AAGGGT--------CTGTCCGTCTCTCCGTATGTAT----GAACGCGAGGATCTCAGAACCTATAAGAGCTAGAGACTTGAA
droMoj3	scaffold_5891:4390-4658 +		TTAATCGATAACAAAATAACGGGGTA--AGTTATCGCTATTTAAAGCCAAAC--TCGATATGCGCGTGCTATACACGGACGTAGGAAAAAA-----AATTTCAATGG----GAAATCAGGGT--------------------------------------------------------A---TA--ATGGTTTTGTTAAG------------------------------------------------------------T------------------------------GTATGTAACAGAC--------------AGAGGCGTATAAAGTATATATATTCTTGATCAGGGCGACGAGC----------T-----GA------------GTCGATTTAGCTCTGT----CCTTCTGCCCGTCTGTCCGTAT-GTTGAACGCGTCGATCTCAGAACATATAAGAGCTAGAGACTTGAA
droGri2	scaffold_6769:295-525 +		ACACACAC----------------------------------------------------------------------ACAAACAA-----AC---AC---ACACA-C-----------------ACACA--------------------------CA-CACACACATT--TTTGAAA-AAT----ATTGTATAATTAGTTT-------ATCGCCGTCAATTACAATTATTGCTAGGCACT------------------------------------------------------GTTCCAGTT--------------GAACTGTGAGACACTGTATATATTATTGATTTGCATTAGCAGC----------G-----GA------------GTC-ATACAACCA--------TGTCCATCTGTCCGTTTGTTT----GAGCAAGTGGATCTCAGAGATTTTAAGAGCTAGAGACACCAA
droWil2	scf2_1100000004967:1988677-1988871 +		AAGCGGT----------------------------------------------------AGATGTC--TAATACTT--ATAAATTA-----AC---CT---AACTA-A-----------------ATAAA--------------------------TAACCTAAATAAA--TTGGAAAG---CA--ACGAAATTATTAAC---------------------------------------------------------------------------------------------------------------------------------------TTATATTCTTGATCAGCATCTACAAC----------C-----GA------------GTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCTGTCCGTAT----GAACACCGAGATCTCGGAGACTGTAAAAGCTAGAGCTACCAA
dp5	3:5919437-5919491 +		TTGCCAGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGG----AGGCGCTGGAACCGCAATCGCCGCTGTTTCACATCAGGTAAG
droPer2	scaffold_3638:944-1002 -		GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTCCGTCTGTCCGTCTGTCT----GAGTTCAAGGATCTCAGAACCCATAAGAGTTAGAG-------
droAna3	scaffold_13258:1434110-1434175 -		GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCCTGTTTGAATGTATGTAT----GAAAGCGTGGATCTTAGAGACTATAAGAGATAGAGCTATAAA
droBip1	scf7180000393432:27039-27201 +		TATTGTAT------------------------------------------------------------------------------------------------------TTGTGAGAATGT-AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAACATAGAAAAGGAATTATATTCGACCACATAAAGTATATATATCCTTGATCAGTATAAAAAAA----------A-----GA------------ATTGAAAAAGCCT------------TGTCCGTCAGTCTTTAT----AAACACGTGGATCACAGAGACTATAAGAGATAGAGCTATAGG
droKik1	scf7180000302237:5969-6044 -		CTACACT--------------------------------------------------------------------C--ATAAAAAT-----AT---TT---TTCTA-GATTTAAGAAAAATCGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAT----AAAAAAATCGACCTTAA-----------ACTAAGAAAAGTTT
droFic1	scf7180000454044:639436-639487 +		CTGCCGAGCAAGGAGGCCTTGGAGCCACAGTCGCCGCTATTCCACATCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGT
droEle1	scf7180000491228:74394-74547 -		CTGCCGAGCAAGGAGGCCCTGGAGCCACAGTCGCCGCTATTTCACATCAGGTGAG------------------------------CCGATC-----AATTTAGCTTA----GGA---------------A--------------------------TACC-------------------------------------------------------------------------------------------------------------------CAAAATAAGTTTTGAAAT---------------------------------GTTCAGTAGATATACTCTTATACA----------------------------G------------ATAAATCTAATCGGTC---------------------------------------------------------AGATATATTATTTAT
droRho1	scf7180000771777:627-779 +		CGCTT-------------------------------------------------------------------------ATATACGA-----TT---TT---TA--A-AATTTAAATA---TT-TC---------------------------------------GAAAAAGTAAAAATG---CA-----GTTTTATT-----------------------------------------------------------------------------------------------------------------------------------------------GTGTTTATCAATACCTA-----------------------------------TCGAAA------TGTCTGTCCGTCTGTCTGTCTGTCCGTAT----GAACGCTGAGATCTCGGAAACTATAAGAGCTAGAAGATTGGC
droBia1	scf7180000302098:532396-532610 +		TGTTAAAAT------------------------------------------------------------------C--ACCAAAAA-----AT---TT---TTTTT-AATTT-------------------------------------------------------------------------------------------------TTCCCCATTAGTTCCTAAGGG---AAATCAATATACCCTCTGCAAGGGTAC-----------------------------------ACAAATTTGAGAAGAAGCC-----------------------TTATTATA--------CCCGTTACTCGTAGAGT--AAAAGGGTATATTAAATTCGTCGGAAAGT------------ACATGTCCGTCTGTCCGTAT----GAACGCTGAGATCTGGGAAACTATAAAAGCTAGAACAGTCAA
droTak1	scf7180000415909:237393-237612 -		CAAGATC-------------------------------------------------------------------------AAGAAA-----TG---CG---AAG-----CGTAGAGCAAGAAG-AAGATATGTGGATGGACTATTTGTTGGAAGAATTTG----------------------GAAT-------T-GAATCTCTGTGATG---------------------------------------------------TTGATTTATGGAATATAT-------ATCTTGTTCC----------------------------CCAGATTATCTAGCTAATT---------------------ATAGAGT--AAAAGGG--------------T----ATATT--------GTATCCGTCTGTCTGTCCGTTT----GAACGCTGAGATCTCGGAAACTACAAAAGCTAGAAGGTTGAG
droEug1	scf7180000407468:10020-10149 -		ACTTGAGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-A-----------------------------------------------------------------------------------------------------------------AC----------------------------CCTGCTTATTTGGCTTATTCTTGATCAGTATCAAAAGC----------G-----AA------------GACGATTGAGCCT--------TGCCCGTTTGTCTGTCCGTAT----GAACGCTGAGATCTCAGGAACTATAAGAAATAGGAAGTTGAA
dm3	chrU:1975447-1975525 +		ATCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA------------GTCGATCTAGCCC------------TGTCCGTCTGTCCGTAT----GAACGTCGAGATCTCAGTAACTGCTACAGCTAGAAGGTTGAG
droSim2	3l:23196938-23197121 +		CACGC-------------------------------------------------------------------------ACAAACAA-----ATGGATT---TTCCA-CATCTAGAGCAGACCG-CATAAA------------------------------------------------------------TTTTATT----------------------------------------------------------------------------------------------ATAATTTGCATAC--------------TCACACTAATAAATTTTATATATTCTTCTTAAGGATCAATAGC----------C-----GA------------GTCGATCTGGCAATGG--------------CCATGGCCATCTG---AACTATCTTGATCTCAGGAACTATAAAAGCTATTAAGTTGAG
droSec2	scaffold_90:63604-63716 +		ATATATT----------------------------------------------------------------------------------------------TTCTT-GATCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-------------AGATCCTGATC----------C-----GA------------GTGGATCTGGCCATGT----CGGTCTGTCTGTCCGTCCGTAT----GAACGTCGAGATCTCAGGATCTGTAAAAGCTAGAGGCTTGAG
droYak3	3R:826619-826808 +		TATATT-------------------------------------------------------------------------TGAATAA-----AG---CG---TACCA-A-----------------ATAAG--------------------------TAA-------------------------AT---------TTAACTTACTGTAT---------------------------------------------------TTAATTTGTCAAATTTGAAATCATTTTTTAAATC---------------------------GCCACAAAAGCTATA-TAAGA---------------------GAAATAT--ATA--GA------------AAT-ATA------TGTCCGTCCGTCTGTCTGTCCGTCCGTAT----GAGCGTGGAGATCGCAGGAACTATAAAAGCTACAAGGTCGAG
droEre2	scaffold_4770:1900549-1900614 +		GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTCCGTCCGTCTGTCCGTAT----GAACGGCTCGATCTCAGGAACTATAAAAGCTAGAAACTTGAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TTGCCCGTTAAAGAAACGCTGGAGCCGCAGTCGCCGCTGTTTCATATCAGGTAAGCGGCAAGCGATTGCTACACTT--ACAAACAA-----AT---TT---TACTA-CATTTAAGAAAATCT-TC---------------------------------------GTAAAAGGA--AATT---TAAT-------------------------------------------------------TTA----------------------------------------------------------------------------ACTTCAACACATTTTATTTATTATA--------CCCTGAACCCAT----TAAAAATGGG------------TATA--AAGGGT--------CTGTCCGTCTCTCCGTATGTAT----GAACGCGAGGATCTCAGAACCTATAAGAGCTAGAGACTTGAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAT----GAACGCGAGGATCTCAGAAC......................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCTCAGAACCTATAAGAG.............	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTATAAGAGCTAGAGAC.....	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGAACCTATAAGAGCTA..........	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGAACCTATAAGAGCTAG.........	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTAATCGATAACAAAATAACGGGGTA--AGTTATCGCTATTTAAAGCCAAAC--TCGATATGCGCGTGCTATACACGGACGTAGGAAAAAA-----AATTTCAATGG----GAAATCAGGGT--------------------------------------------------------A---TA--ATGGTTTTGTTAAG------------------------------------------------------------T------------------------------GTATGTAACAGAC--------------AGAGGCGTATAAAGTATATATATTCTTGATCAGGGCGACGAGC----------T-----GA------------GTCGATTTAGCTCTGT----CCTTCTGCCCGTCTGTCCGTAT-GTTGAACGCGTCGATCTCAGAACATATAAGAGCTAGAGACTTGAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAAGAGCTAGAGACTTGA.	21	20	0.15	3	3	0	0	0	0	0
....TCGATAACAAAATAACGGGGTA--AGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	7	0.14	1	0	1	0	0	0	0
....TCGATAACAAAATAACGGGGTA--AGTTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	7	0.14	1	1	0	0	0	0	0
....TCGATAACAAAATAACGGGGTA--AG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	7	0.14	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AAGTATATATATTCTTGATCAGG...............................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAACGCGTCGATCTCAGA........................	20	20	0.05	1	1	0	0	0	0	0
...................................................................................................TTCAATGG----GAAATCAGGGT--------------------------------------------------------A---T........................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
.TAATCGATAACAAAATAACGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0

droGri2

ACACACAC----------------------------------------------------------------------ACAAACAA-----AC---AC---ACACA-C-----------------ACACA--------------------------CA-CACACACATT--TTTGAAA-AAT----ATTGTATAATTAGTTT-------ATCGCCGTCAATTACAATTATTGCTAGGCACT------------------------------------------------------GTTCCAGTT--------------GAACTGTGAGACACTGTATATATTATTGATTTGCATTAGCAGC----------G-----GA------------GTC-ATACAACCA--------TGTCCATCTGTCCGTTTGTTT----GAGCAAGTGGATCTCAGAGATTTTAAGAGCTAGAGACACCAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....CAC----------------------------------------------------------------------ACAAACAA-----AC---AC---ACACA-C-----------------AC................................................................................................................................................................................................................................................................................................................................................................	23	17	0.06	1	1	0
....ACAC----------------------------------------------------------------------ACAAACAA-----AC---AC---ACAC......................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0

droWil2

AAGCGGT----------------------------------------------------AGATGTC--TAATACTT--ATAAATTA-----AC---CT---AACTA-A-----------------ATAAA--------------------------TAACCTAAATAAA--TTGGAAAG---CA--ACGAAATTATTAAC---------------------------------------------------------------------------------------------------------------------------------------TTATATTCTTGATCAGCATCTACAAC----------C-----GA------------GTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCTGTCCGTAT----GAACACCGAGATCTCGGAGACTGTAAAAGCTAGAGCTACCAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......T----------------------------------------------------AGATGTC--TAATACTT--ATAAATTA-----AC---C..............................................................................................................................................................................................................................................................................................................................................................................................	27	17	0.18	3	0	3	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTCTGTCCGTAT----GA........................................	21	20	0.15	3	0	0	0	3	0
............................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGTCCG.............................................................	22	20	0.15	3	0	0	0	3	0
....................................................................................................................................................................................................................................................................................................................................................................ACAAC----------C-----GA------------GTCGATCTAGCCA...........................................................................	21	20	0.15	3	0	3	0	0	0
...........................................................................................................................................................................TTGGAAAG---CA--ACGAAATTATTAAC---------------------------------------------------------------------------------------------------------------------------------------T...............................................................................................................................................	25	15	0.13	2	0	1	0	1	0
...........................................................................................................................................................................TTGGAAAG---CA--ACGAAATTATTAAC---------------------------------------------------------------------------------------------------------------------------------------TT..............................................................................................................................................	26	12	0.08	1	0	1	0	0	0
.................................................................C--TAATACTT--ATAAATTA-----AC---CT---AACT......................................................................................................................................................................................................................................................................................................................................................................................	25	16	0.06	1	0	1	0	0	0
.................................................................................AATTA-----AC---CT---AACTA-A-----------------ATAAA--------------------------TAACC..............................................................................................................................................................................................................................................................................................................................	25	17	0.06	1	0	1	0	0	0
...........................................................AGATGTC--TAATACTT--ATAAATTA-----AC---C..............................................................................................................................................................................................................................................................................................................................................................................................	26	17	0.06	1	0	1	0	0	0
...........................................................................................................................................................................TTGGAAAG---CA--ACGAAATTATTAAC---------------------------------------------------------------------------------------------------------------------------------------................................................................................................................................................	24	19	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGGAGACTGTAAAAGCTA..........	21	20	0.05	1	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCCGTCCGTCTGTCCGT................................................	25	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................GA------------GTCGATCTAGCCATGTCCG.....................................................................	21	20	0.05	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................AC----------C-----GA------------GTCGATCTAGCCATGTCCGTCTG.................................................................	28	20	0.05	1	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCCGTCTGTCCGTAT----GA........................................	23	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCCGTCCGTCTGTCC..................................................	25	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCGGAGACTGTAAA...............	19	20	0.05	1	0	0	1	0	0
.....................................................................................................................................................................TAAA--TTGGAAAG---CA--ACGAAATT.............................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................TTGGAAAG---CA--ACGAAATTATTAA........................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0

dp5

TTGCCAGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGG----AGGCGCTGGAACCGCAATCGCCGCTGTTTCACATCAGGTAAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGAACCGCAATCGCCG...................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTCCGTCTGTCCGTCTGTCT----GAGTTCAAGGATCTCAGAACCCATAAGAGTTAGAG-------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCAAGGATCTCAGAACCCATAAGA..............	27	20	0.25	5	0	5	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGGATCTCAGAACCCAT..................	20	20	0.05	1	0	0	0	0	1	0

droAna3

GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCCTGTTTGAATGTATGTAT----GAAAGCGTGGATCTTAGAGACTATAAGAGATAGAGCTATAAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

TATTGTAT------------------------------------------------------------------------------------------------------TTGTGAGAATGT-AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAACATAGAAAAGGAATTATATTCGACCACATAAAGTATATATATCCTTGATCAGTATAAAAAAA----------A-----GA------------ATTGAAAAAGCCT------------TGTCCGTCAGTCTTTAT----AAACACGTGGATCACAGAGACTATAAGAGATAGAGCTATAGG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTACACT--------------------------------------------------------------------C--ATAAAAAT-----AT---TT---TTCTA-GATTTAAGAAAAATCGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAT----AAAAAAATCGACCTTAA-----------ACTAAGAAAAGTTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTGCCGAGCAAGGAGGCCTTGGAGCCACAGTCGCCGCTATTCCACATCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTGCCGAGCAAGGAGGCCCTGGAGCCACAGTCGCCGCTATTTCACATCAGGTGAG------------------------------CCGATC-----AATTTAGCTTA----GGA---------------A--------------------------TACC-------------------------------------------------------------------------------------------------------------------CAAAATAAGTTTTGAAAT---------------------------------GTTCAGTAGATATACTCTTATACA----------------------------G------------ATAAATCTAATCGGTC---------------------------------------------------------AGATATATTATTTAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CGCTT-------------------------------------------------------------------------ATATACGA-----TT---TT---TA--A-AATTTAAATA---TT-TC---------------------------------------GAAAAAGTAAAAATG---CA-----GTTTTATT-----------------------------------------------------------------------------------------------------------------------------------------------GTGTTTATCAATACCTA-----------------------------------TCGAAA------TGTCTGTCCGTCTGTCTGTCTGTCCGTAT----GAACGCTGAGATCTCGGAAACTATAAGAGCTAGAAGATTGGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGTTAAAAT------------------------------------------------------------------C--ACCAAAAA-----AT---TT---TTTTT-AATTT-------------------------------------------------------------------------------------------------TTCCCCATTAGTTCCTAAGGG---AAATCAATATACCCTCTGCAAGGGTAC-----------------------------------ACAAATTTGAGAAGAAGCC-----------------------TTATTATA--------CCCGTTACTCGTAGAGT--AAAAGGGTATATTAAATTCGTCGGAAAGT------------ACATGTCCGTCTGTCCGTAT----GAACGCTGAGATCTGGGAAACTATAAAAGCTAGAACAGTCAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAAGATC-------------------------------------------------------------------------AAGAAA-----TG---CG---AAG-----CGTAGAGCAAGAAG-AAGATATGTGGATGGACTATTTGTTGGAAGAATTTG----------------------GAAT-------T-GAATCTCTGTGATG---------------------------------------------------TTGATTTATGGAATATAT-------ATCTTGTTCC----------------------------CCAGATTATCTAGCTAATT---------------------ATAGAGT--AAAAGGG--------------T----ATATT--------GTATCCGTCTGTCTGTCCGTTT----GAACGCTGAGATCTCGGAAACTACAAAAGCTAGAAGGTTGAG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACTTGAGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-A-----------------------------------------------------------------------------------------------------------------AC----------------------------CCTGCTTATTTGGCTTATTCTTGATCAGTATCAAAAGC----------G-----AA------------GACGATTGAGCCT--------TGCCCGTTTGTCTGTCCGTAT----GAACGCTGAGATCTCAGGAACTATAAGAAATAGGAAGTTGAA	Size	Hit Count	Total Norm	Total
No Reads

dm3

ATCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA------------GTCGATCTAGCCC------------TGTCCGTCTGTCCGTAT----GAACGTCGAGATCTCAGTAACTGCTACAGCTAGAAGGTTGAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGATCTCAGTAACTGCTACAGC............	24	1	27.00	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	3	0	6	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCCGTAT----GAACGTCGAGA...............................	26	20	24.30	486	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	2	0	5	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	10	0	0	0	2	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	2	2	0	1	0	0	0	0	0	0	0	0	1	14	0	0	0	27	119	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	8	17	170	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCCGTAT----GAACGTCGA.................................	26	20	23.80	476	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	1	0	0	0	0	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	1	7	0	0	0	5	5	0	2	0	3	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	12	0	7	5	0	3	0	47	0	0	0	0	1	0	19	4	0	0	25	5	0	0	0	0	0	0	0	0	0	0	3	0	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	1	0	0	0	0	0	38	4	7	0	12	0	0	0	0	35	0	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	11	0	19	117	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTAACTGCTACAGCTAGAAGGT....	25	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCTGTCCGTAT----GAACGTCGAGA...............................	27	20	11.10	222	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	1	0	0	0	0	0	5	0	0	0	1	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	4	1	5	0	10	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	7	2	0	157	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................T----GAACGTCGAGATCTCAGTAACTGC..................	25	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCCGTAT----GAACGTCGAGA...............................	28	20	9.20	184	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	2	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	2	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	7	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	4	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	3	0	21	0	0	0	0	7	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	4	94	0	0	0	0	4
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGATCTCAGTAACTGCTACAGC............	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTAT----GAACGTCGAGA...............................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAT----GAACGTCGAGATC.............................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................T----GAACGTCGAGATCTCAGTATA.....................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTAT----GAACGTCGAGATCTCA..........................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCCGTAT----GAACGTCGAGAT..............................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCTGTCCGTAT----GAACGTC...................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCCGTAT----GAACGTCGAGATCTCA..........................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CACGC-------------------------------------------------------------------------ACAAACAA-----ATGGATT---TTCCA-CATCTAGAGCAGACCG-CATAAA------------------------------------------------------------TTTTATT----------------------------------------------------------------------------------------------ATAATTTGCATAC--------------TCACACTAATAAATTTTATATATTCTTCTTAAGGATCAATAGC----------C-----GA------------GTCGATCTGGCAATGG--------------CCATGGCCATCTG---AACTATCTTGATCTCAGGAACTATAAAAGCTATTAAGTTGAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTATTAAGTTG..	26	1	5.00	5	0	0	0	0	0	0	2	0	0	1	2	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTATTAAGT....	24	1	4.00	4	0	0	0	0	0	0	2	0	0	0	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................CAATAGC----------C-----GA------------GTCGATCTGGCAATG.........................................................................	25	1	4.00	4	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTATTAAGTTGAG	28	1	3.00	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCATCTG---AACTATCTTGATC.............................	23	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................C-----GA------------GTCGATCTGGCAATGG--------------CCATGG....................................................	25	1	2.00	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCATCTG---AACTATCTTGATCTC...........................	25	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................AAGGATCAATAGC----------C-----GA------------GTCGATC.................................................................................	23	5	1.20	6	0	0	0	0	0	0	2	3	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCTCAGGAACTATAAAAGCTA..........	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................C-----GA------------GTCGATCTGGCAATGG--------------CCATGGT...................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCATCTG---AACTATCTTGATCTCA..........................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGCCATCTG---AACTATCTTGATCTC...........................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................GA------------GTCGATCTGGCAATGG--------------CCATGGTA..................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCATCTG---AACTATCTTGATCT............................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..CGC-------------------------------------------------------------------------ACAAACAA-----ATGGATT---TTCCA-CA..................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................C-----GA------------GTCGATCTGGCAATGG--------------CCATGGC...................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................GA------------GTCGATCTGGCAATGG--------------CCATC.....................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGAACTATAAAAGCTATTAAG.....	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTATTAAG.....	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................CCA-CATCTAGAGCAGACCG-CATAAA------------------------------------------------------------TT...............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCATCTG---AACTATCTTGATCTCA..........................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................GA------------GTCGATCTGGCAATGG--------------CCATGGC...................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCATCTG---AACTATCTTGAT..............................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................A------------GTCGATCTGGCAATGG--------------CCATGGT...................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
CACGC-------------------------------------------------------------------------ACAAACAA-----ATGGATT---TTCCA-C...................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTTGATCTCAGGAAC.....................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................C-----GA------------GTCGATCTGGCAATGG--------------CCATG.....................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTATTAAGTT...	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TTCTTCTTAAGGATCAATAGC----------C-----GA------------GT......................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................C-----GA------------GTCGATCTGGCAATGG--------------CCATGGG...................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................AAGGATCAATAGC----------C-----GA------------GTCGAT..................................................................................	22	5	0.80	4	0	0	0	0	0	0	1	1	0	2	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCTCAGGAACTATAAAAG.............	23	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................AAGGATCAATAGC----------C-----GA------------GTCGATCT................................................................................	24	5	0.40	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................C-----GA------------GTCGATCTGGCAAT..........................................................................	17	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAGGAACTATAAAAGCT...........	22	20	0.30	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................GA------------GTCGATCTGGCAATG.........................................................................	17	7	0.29	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TAAGGATCAATAGC----------C-----GA------------GTCGATC.................................................................................	24	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAGGAACTATAAAAGCTAT.........	24	5	0.20	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TAAGGATCAATAGC----------C-----GA------------GTCGAT..................................................................................	23	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTA..........	18	20	0.15	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................TCAATAGC----------C-----GA------------GTCGATCT................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAGGAACTATAAAA..............	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGC----------C-----GA------------GTCGA...................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................TCAATAGC----------C-----GA------------GTCGATCTGG..............................................................................	21	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................AATAGC----------C-----GA------------GTCGATCT................................................................................	17	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................AGC----------C-----GA------------GTCGATCTG...............................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................CAATAGC----------C-----GA------------GTCGATCTGG..............................................................................	20	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................ATCAATAGC----------C-----GA------------GTCGATCTG...............................................................................	21	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................AATAGC----------C-----GA------------GTCGATCTGGC.............................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGC----------C-----GA------------GTCGATCTGGC.............................................................................	26	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

ATATATT----------------------------------------------------------------------------------------------TTCTT-GATCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-------------AGATCCTGATC----------C-----GA------------GTGGATCTGGCCATGT----CGGTCTGTCTGTCCGTCCGTAT----GAACGTCGAGATCTCAGGATCTGTAAAAGCTAGAGGCTTGAG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TAT----GAACGTCGAGATCTCAG.........................	20	20	0.05	1	1	0	0	0

droYak3

TATATT-------------------------------------------------------------------------TGAATAA-----AG---CG---TACCA-A-----------------ATAAG--------------------------TAA-------------------------AT---------TTAACTTACTGTAT---------------------------------------------------TTAATTTGTCAAATTTGAAATCATTTTTTAAATC---------------------------GCCACAAAAGCTATA-TAAGA---------------------GAAATAT--ATA--GA------------AAT-ATA------TGTCCGTCCGTCTGTCTGTCCGTCCGTAT----GAGCGTGGAGATCGCAGGAACTATAAAAGCTACAAGGTCGAG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCGTCCGTAT----GAGCGTGGA.................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTCCGTCCGTCTGTCCGTAT----GAACGGCTCGATCTCAGGAACTATAAAAGCTAGAAACTTGAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_7998

scaffold_12875:19646674-19646824 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

AACGGGCAATTTCTTTGCGACCTCGGCGTCAGCGGCGACAAAGTATAGTCCATTCGCCGTTCGCTAACGATGTGAATGTTTGTTTAAAATGATGTAAATTCTTTTAGAAGCATTTTCCTTTAAATTAAATTGAAGTTGTGTAAAATAAATAATATGGGACTTGGGTAATTTTTACCCATATTTCCCAGACAGGCAGAGAGGCATACATACTTGCGCTCCTAGAGTCTTGGATATTCTCGATCTCTGAACTT ************************************************(((((.(((((....)))))...)))))....(((((((.((...((((.(((....))).)))))))))))))..............................(((((..(((((((...)))))))....)))))..............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060677 Argx9_ovaries_total	SRR060654 160x9_ovaries_total	SRR060676 9xArg_ovaries_total	SRR060658 140_ovaries_total	SRR060675 140x9_ovaries_total	SRR060674 9x140_ovaries_total	SRR060685 9xArg_0-2h_embryos_total	SRR060678 9x140_testes_total	SRR060689 160x9_testes_total	SRR060679 140x9_testes_total	SRR060684 140x9_0-2h_embryos_total	SRR060681 Argx9_testes_total	SRR060673 9_ovaries_total	SRR060682 9x140_0-2h_embryos_total	SRR060687 9_0-2h_embryos_total	V116 male body	M027 male body	M047 female body	SRR060680 9xArg_testes_total	SRR060686 Argx9_0-2h_embryos_total	SRR060670 9_testes_total	V053 head	SRR060683 160_testes_total	SRR1106729 mixed whole adult body	SRR060657 140_testes_total	SRR060672 9x160_females_carcasses_total	V047 embryo
............................................................TCGCTAACTATGTGAGTGGTTGTT.......................................................................................................................................................................	24	3	1	58.00	58	18	10	8	5	7	2	3	0	0	1	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................TCGCTAACTATGTGAGTGGTTGT........................................................................................................................................................................	23	3	1	13.00	13	1	4	3	2	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CTTGGATATTCTCGATCTCTGAACTT	26	0	20	3.80	76	0	0	52	0	0	0	0	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................................................................................TGGATATTCTCGATCTCTGAACTT	24	0	20	1.75	35	0	0	0	0	0	0	0	0	34	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.ACGGGCAAGTACTTTGGGACC.....................................................................................................................................................................................................................................	21	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TTGGATATTCTCGATCTCTGAAC..	23	0	20	0.90	18	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................GCTAACTATGTGAGTGGTTGTT.......................................................................................................................................................................	22	3	3	0.67	2	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................AGTCTTGGATATTCTCGATCTCTGAAC..	27	0	20	0.55	11	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................GATTGTTTGTTTAAAATGGT..............................................................................................................................................................	20	2	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................TCGCTAACTATGTGAGTGGTT..........................................................................................................................................................................	21	3	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CCAAATATCCCAGAAAGGCAGA......................................................	22	3	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CTTGGATATTCTCGATCTCTGAAC..	24	0	20	0.40	8	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GGATATTCTCGATCTCTGAACTT	23	0	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	5	0	0	0	0	0	0	0	0	0
.............................................................CGCTAACTATGTGAGTGGTTG.........................................................................................................................................................................	21	3	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................AGACAGGCAGAGAGGCATACATACTT.......................................	26	0	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................ACAGGCAGAGAGGCATACAT...........................................	20	0	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................TTCGCTAACTATGTGAGT..............................................................................................................................................................................	18	2	5	0.20	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GAGTCTTGGATATTCTCGATCTCT......	24	0	20	0.15	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CTACTTGCGCTCCTAGAGTC.........................	20	1	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
................................................................................................................................................................................CAAGTATCCCAGACAGGCAG.......................................................	20	3	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................CTAACTATGTGAGTGGTTGTT.......................................................................................................................................................................	21	3	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TCCCAGAAAGGCAGA......................................................	15	1	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................TTGCGCTCCTAGAGTCTTGGATAT.................	24	0	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................TGGGACTTGGGTAATTTTTACCCATAT......................................................................	27	0	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................TGGGACTTGGGTAATTTTTACCCATATT.....................................................................	28	0	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................GGGACTTGGGTAATTTTTACCCAT........................................................................	24	0	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GTCTTGGATATTCTCGATCTCTGAAC..	26	0	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TTGGATATTCTCGATCTCTGAACTT	25	0	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TACTTGCGCTCCTAGAGTCTTGGATATT................	28	0	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TCCCAGAAAGGCAGATCG...................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................GATATTCTCGATCTCTGAACTT	22	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................GGGACTTGGGTAATTTTTACCCATATTT....................................................................	28	0	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CTTGGATATTCTCGATCTCTGAACT.	25	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................ATACATACTTGCGCTCCTAGAGTC.........................	24	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................ATACATACTTGCGCTCCTAGAGTCT........................	25	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TACTTGCGCTCCTAGAGTCTTGGATAT.................	27	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CGCTCCTAGACTCTTGGATATT................	22	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CCCAGAAAGGCAGATCGG..................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................................................TAATATGGGACTTGGGTAATTTTTACC...........................................................................	27	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................ATGGGACTTGGGTAATTTTTA.............................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GCATACATACTTGCGCTCCTA..............................	21	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CGCTCCTAGAGTCTTGGATATT................	22	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................GCATACTTGCGCTCCTAGAGTCTT.......................	24	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................GGACTTGGGTAATTTTTA.............................................................................	18	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................................................................................CTCATAGAGTCTTGGATATTCTCGATCT........	28	1	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGGATATTCTCGATCTCTGAAC..	22	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGGATATTCTCGATCTCTGAACT.	23	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................ACTTGCGCTCCTAGAGTCTT.......................	20	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GGATATTCTCGATCTCTGAAC..	21	0	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................TGGGACTTGGGTAATTTTTAC............................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................GATATTCTCGATCTCTGAAC..	20	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................ACATACTTGCGCTCCTAGAGTCTT.......................	24	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CCCCAGAAAGGCAGAAAGG..................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................AGGCATACATACTTGCGCTCCTAGAGT..........................	27	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GAGTCTTGGATATTCTCGATCTCTGAA...	27	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................CTAGAGTCTTGGATATTCTCGAT..........	23	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................CTTGCGCTCCTAGAGTCTTGGATATT................	26	0	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0