ID:

dvi_7957

 Coordinate:

scaffold_12875:19340881-19341117 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.1 -25.0 -25.0

Flybase annnotation

CDS [Dvir\GJ19943-cds]; CDS [Dvir\GJ19943-cds]; exon [dvir_GLEANR_5410:6]; exon [dvir_GLEANR_5410:5]; intron [Dvir\GJ19943-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCATCGCATGCCCAAGCGTAGCGCACCATCGGGCTATGAATACACCAAACGTAAGTTGAGCCAACGATTTGTAGCTAGAAAACCCTTAAAACAACTTATTTAGGGTGGGGATTGGGTATTGGGATTCAACCAAATAAATAATATCGATTGCATAAACTATTAAAAAAAAAAAAACAAGCATTTGAACGATGACTAATTTTTAAAATAACAAATTTTCTATTTATAACTTTATATACCTACTGAATTTTTACGTACATATAACATATTAAAAATGAATAATTTTATAGCACGCCCATCAATAATACCAACAAACGCAGCTGCATATAAACGGCCTCAG
**************************************************....((((...))))...((((((.(((((((.(((((((........)))))))((((((((((..((((((......))............((((.(((..........................))).)))).))))..))))))))))..........))))))).))))))..((((((...((((((....))).))).))))))..........(((((....)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 SRR060670
9_testes_total
 SRR060659
Argentina_testes_total
 SRR060664
9_males_carcasses_total
 SRR060677
Argx9_ovaries_total
 SRR060681
Argx9_testes_total
 SRR1106717
embryo_6-8h
 V053
head
 SRR060687
9_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 V047
embryo
 SRR060685
9xArg_0-2h_embryos_total
 M027
male body		 M028
head
..........................................................AGCCAACGATCTGTAGCT..................................................................................................................................................................................................................................................................... 18 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AGCGTAGCGCACCATCGGGC............................................................................................................................................................................................................................................................................................................... 20 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................AGCCAACGATCTGTAGCTGG................................................................................................................................................................................................................................................................... 20 2 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGTTGAGCCAACGATTTGTAGCTAGAAAACCCTTTAAACAAC.................................................................................................................................................................................................................................................. 45 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................AGTTGAGCCAACGATTTGTAGT...................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................ATCGGGCTATGAATACACCA.................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................TTAGGGTGGGGATTGGGTATTGGGA..................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................GGTGGGGATTGGGTATTGA....................................................................................................................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................ACCAACAAACGCAGCTGCATAT............ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........GCCCAAGCGTAGCGCACCATCGG................................................................................................................................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................ATACACCAAACGTAAGTTGAGC.................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................AATACGCCAAGCGTAAGTTGA...................................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................AAGCCAACGATCTGTAGCT..................................................................................................................................................................................................................................................................... 19 2 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................AAGCCAACGATCTGTAGC...................................................................................................................................................................................................................................................................... 18 2 9 0.22 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................AGCCGACGATCTGTAGCTGG................................................................................................................................................................................................................................................................... 20 3 11 0.18 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................AAGCCGACGATCTGTAGCT..................................................................................................................................................................................................................................................................... 19 3 20 0.15 3 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1
..............................................................................................................................................................................................................................................................................................................TAGCTACAAACGCAGCTGC................ 19 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................ATTTATGGTGGGGAGTCGG............................................................................................................................................................................................................................. 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0
................................................................................................................................................................AAAAAAAAAGAAAACAAGCATTT.......................................................................................................................................................... 23 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....GCACGTCCAAGGGTAGCGC......................................................................................................................................................................................................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................CATTAACTCTTAAAAAAAAAAA..................................................................................................................................................................... 22 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

AGTAGCGTACGGGTTCGCATCGCGTGGTAGCCCGATACTTATGTGGTTTGCATTCAACTCGGTTGCTAAACATCGATCTTTTGGGAATTTTGTTGAATAAATCCCACCCCTAACCCATAACCCTAAGTTGGTTTATTTATTATAGCTAACGTATTTGATAATTTTTTTTTTTTTGTTCGTAAACTTGCTACTGATTAAAAATTTTATTGTTTAAAAGATAAATATTGAAATATATGGATGACTTAAAAATGCATGTATATTGTATAATTTTTACTTATTAAAATATCGTGCGGGTAGTTATTATGGTTGTTTGCGTCGACGTATATTTGCCGGAGTC
**************************************************....((((...))))...((((((.(((((((.(((((((........)))))))((((((((((..((((((......))............((((.(((..........................))).)))).))))..))))))))))..........))))))).))))))..((((((...((((((....))).))).))))))..........(((((....)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060658
140_ovaries_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 M047
female body
 V047
embryo
 SRR060687
9_0-2h_embryos_total
 GSM1528803
follicle cells		 M061
embryo
...............................................................................................................................................................................................................................................................................................GTGCGGGTAGTTATTATGGTT............................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......TACGGGTTCGCGTCGCGTGGT..................................................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................TAAACATCGATCTTTTGGGAA.......................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................TATGGATGACTTAAAAATGCA.................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................ATTATGGTGGTTTGGGTC.................... 18 2 6 0.17 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................CCGGGTAGTTCTTATAGTTGT........................... 21 3 6 0.17 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................ATATCGTGCAGCCAGTTAT.................................... 19 3 7 0.14 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................TGTTCAGACACTTGCTACTG................................................................................................................................................ 20 3 8 0.13 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................................................................................GGGTAGTTCTTATAGTTGTGT......................... 21 3 17 0.06 1 0 0 0 0 1 0 0 0 0
.......................................................................................................CCAGCCCTAACCCATTA......................................................................................................................................................................................................................... 17 2 18 0.06 1 0 0 0 0 0 0 0 1 0
...........................GAGCCAGATCCTTATGTG.................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0
...................TCGGGTGGTAGCGCGATG............................................................................................................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................................................................................................................................ATTATGGTGGTTTGGGTCA................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:19340831-19341167 - dvi_7957 TCA------TCGCATGCC---CAAGCGTAGCGCACCATCGGGCTATGAATACACCAAACGTAAGTTGAG---CCA-ACGA------------TTTGTAGCTAG------------------------------------------------------AAAACC------CT------------TAAAA-----CA-----------------------------------------------------------A------CTTATTTAGG--GTGGG----GAT-----TGGGTATTGGGATT--------------------C-------------------------------------------AACCA-----AATAAATAATATCGA---------------------------------------------------------TTGCAT-AAAC---------T-ATTAAAAAA--------AAAAAAACAA-GCATTTGAA--------CGATGACTAATTTTTA--A-------AAT---AACAAAT------TTTCTATTT-A-TAACT--------TTA--TATACCTACTGAATTTT-TACGTACATA---TAACATATTA-AAAAT------GAA-------TA-ATTTTATAGCACGCCCATCAATAATACCAACAAACGCAGCTGCATATAAACGGCCTCAG
droMoj3 scaffold_6496:13039058-13039447 - TCA------TCGCATGGC---CAAGCGTGGCGCACCATCTGGATATGAATACACCAAACGTAAGTTAAG---CCA-ACGA------------TTCGTAGCGAGTA------------TACCTTAGAAATCCCAACTATGAAC--------------------------------------------AA-----CAACATAACAATGGGGGATCTTCTCT--TAGTGCGGGTCGATACGAAATCTAA-----ATCG------T--TATAAATCAAATTG----ATTGCATTATCTA--TG--------------CAA--------AT-----GTC-----TA----------------------------------------------------------------------------------------------------------------------------------------------------AATATTAAAATGCAGTTGAGCTAACTGATGATGACTAATTCTTATGC-------AAT---AACAAACTAT--CTCTCTACATA--------TAATAAC-TC--TATACCTATTCAATTTA-TATAAATGTA---TAACATATTT-AAAAT------GCA--T----AACATTTTATAGCACGCCCATCAATAATACCAACAAGCGCAGCTGCATATAAACGGCCACAG
droGri2 scaffold_15245:6841568-6841949 - TCA------TCGGATGCC---CAAGCGTGGAGCACCATCAGGATATGAATACAACAAACGTAAGTGGAT---------G----CATTTTA--TTTGTGGT-TGTG------------TTTCTTTCAGATCCTTG-TATAAGTCAATACTTATTTTTGGAGGGT------AT----------------------TTC---------------------CTGTTTTT---------TTTTTTACCT--------TGA------T-AATAAAGTAATATTG----ATTGCATTTTGGA--C--------------------------------------------------------------------------------------AAACAGTG--------------------------------------------------------------------CA-A----TTG-T-TATAACA----------TATAATAATGCATTTGAG-------GCGATGACTAATTTTT-----------ATAAATAACAAAA------TTTCTATTT-ATGAACTA-TATAAC-TA--TATACCTATTCAAATTG-TTGATAACTA---TAACATATTA-AA------AATGCA--T----AA-ATTTTATAGCACGCCCATCAATAATACCAACAAACGCAGCCGCATATAAACGACCTCAG
droWil2 scf2_1100000004510:62292-62662 + GCA------TCGTATGCCTATAAAACGAGAGCCACACGCCGGATATCAGTACAGCAAACGTAAGTTCTT-TGACA-C-------------------------------------------------------------------------AGTTTCCGTATTT------AG------------TTCATTCTATCAA---------------------------------------CA-CTACAAACA---ACGTT------C---CCCACCCATCCCG----GTAGCATCTTGATAATGGGTAT-CTA---AGTAT--------AT-----ATT-----TAAA------------------------TATAA--------------TAAAATATTCAAAACTTAACCAAATTAAACTTATCTATATATAACAAACAAAAAAAAGAAAAGAAA-TACCAAA-A------AAT-ATTA-------------------------CAAAAAAT-------GAAAAGAAAAAA----------------AT------------------------------------------AA--TAAACCTTAACTAAATA-TAAACATATA---TAATATA-------------------------TA-ATTTTATAGCACGTCCATCAATAATACCAACCAATGCGGCTGCTTATAAACGTCCACAA
dp5 3:14834636-14835024 + GCATCCACATCGTATGCCTCCCAAGCGTGGCCCACCCACCGGCTATGAGTACAGCAAACGTAAGTGGAGTTGATA-ACG----CCTTT------------------------------TG----------TTTA-CAGTCGTAG-TTCGTATAGACTAGATCT------AT------------TAGA-----TCGC---------------------C-----------------TCTTTTCC--------CTCA------C--TCTAAATTCTAGGG----GTCGCACTTTCGA--TGGGTTTCGTT---GGGGT--------AG-----TTT-----GTAG------------------------C-----------------ACAAGTGATTGA-AACT---------------------------------------------------------GAA-A----CTT-C-TAAAGCAAATAAAA----------------AAGA-----------ATGACTAATTTTA---T-------AAT---AACAATCAAA--CGTTTTATATT--------TAACG--ACC--TAAACCATT-----TTT-GAAACACGCA---TAACATACTA-AAAGTAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAATGCAGCGGCTTATAAACGTCCACAG
droPer2 scaffold_4:4217142-4217533 - GCATCCACATCGTATGCCTCCCAAGCGTGGCCCACCCACCGGCTATGAGTACAGCAAACGTAAGTGGAGTTGATA-ACG----CCTTT------------------------------TG----------TTTA-CAGTCGTAG-TTCGTATAGACTAGATCT------AT------------TAGA-----TCTC---------------------------------------CT---ATTTTCC----CTCA------C--TCTAAATTCTAGGG----GTCGCACTTTCGA--TGGGTTTCGTT---GGGGT--------AG-----TTT-----GTAG------------------------CAC--------------AACAAGTGATTGA-AACT---------------------------------------------------------GAA-A----CTT-C-TAAAGCAAATAAAA----------------AAGA-----------ATGACTAATTTTA---T-------AAT---AACAATCAAA--CGTTTTATATT--------TAACG--ACC--TAAACCATT-----TTT-GAAACACGCA---TAACATACTA-AAAGTAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAATGCAGCGGCTTATAAACGTCCACAG
droAna3 scaffold_13266:7457202-7457632 + dan_1865 GCA------CCGTTTGCCCCCAAAACGC---CCGCCCACGGGCTACGAGTATAGTAAACGTAAGTGGT----CCC-TTGCACGCATTCTTT-----------CCG------------ATC----------TTTT-CATCCTTAGAGAATTAATGCTGGGATCC------GT------------TAGATTGGATCCG--------------------------------------CCTGCAGCCTCCA---GTTCA------CCTTTTACATTTTGCGG----GTTGCACTTTTGA--TGGGCTTCCTTTTGGGGGT--------AG-----ACAGTATTGTAG-----------------------------------------AACCAGTGAATGA-AACA----------------------------------AAA---ACAAAAGAAAAAACCAAA-A------AAT-CTTCATGCA---------ATAATATAATACTTTGGA-----------ATGAATAATTTTA-----------AAT---AATAACCA-----TTTGTATATT--------TAATG--ATC--TAAACCATT-----CTTAATTATACACA---TAACCAGTTT-AAAGTAATAATGAAAATCAATGA-ATTTTATAGCACGTCCATCAATAATACCAACAAGCGCTGCGGCTTATAAACGT------
droBip1 scf7180000396384:270712-271133 + GCA------CCGTTTGCCCCCAAAACGC---CCGCCCACGGGCTACGAGTATAGTAAACGTAAGTGGT----CCC-TTGCACGCATTCTTT-----------CCG------------ATC----------CTTT-CATCCTTAGAGAATTAATGCTGGGATCC------GT------------TAGATTGGATTCG--------------------------------------CTTGCAGCCTCCA---ATTCA------CCTTTTAGATATTGCGG----GTTGCACTTTTGA--TGGGCTTCCTT-TGGGGGT--------AG-----ACA-----GTAG-----------------------------------------AAACAGTGAATGA-AACA----------------------------------AAA---ACAAA------AAC-AAA-AAATAAGT-TGCAATATGCA---------ATAATATAATACTCTGGA-----------ATGACTAATTTTA-----------AAT---AATAACCA-----TTTGTATATT--------TAATG--ATC--TAAACCATT-----CCTAATTATACGAA---AAACCTCTTA-AAAGTAATAATGAA--TCAATGA-ATTTTATAGCACGTCCATCAATAATACCAACAAGCGCTGCGGCTTATAAACGT------
droKik1 scf7180000302476:1750401-1750824 + GCA------CCGTTTGCCCCCCAAGCGC---GCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGCA-TGACC-AAGCATGATTT---T-----------TTGCCCTCTAGCTACATT----------TTTT-CAGCCTTAGAT---------------CTACATATATAATTATATCTATTAGA-----TCCC---------------------------------------TTCTTTCCATCCTCATTGCATTCACTCCATT--TA-TTTATGGGGC-ACAGCACTTTGAA--TGGGTTTCCTT---GGGAT--------AG-----ATT-----GTAG------------------------CAACA---------CAGAACCAGTGA---------------------------------------------------------ATGAAC-GAGAA-AT--GCTT-CTCAATGCAA--------ATAACATAATTTACTAGA-----------AAAATT----TTC-----------AA----AATAAACTAA--AAT---ATCTT-TATTC--TAATG--ATCGATAAACTTTT-----TT---AAAT---AA---TAACTGACTA-AAAATAATAATGAA--C----AA-ATTTTATAGCACGTCCATCAATAATATCAGCAAACGCAGCGGCATATAAACGA------
droFic1 scf7180000454066:2214840-2215247 - GCA------CCGTATGCCCCCCAAGCGT---CCACCTACGGGCTATGAGTACAGCAAACGTAAGTTGGGTCGCTC-ATGCATGCTCT---T-----------CTA------------TCC----------CTCT-CAGCTGTAGATTCGTAGTGCCGGGGTCT------AG------------TAGTTAAGATCGC---------------------------------------CT-CTGCCTTCC---ACGCA------CCATTCCAATTCTATGG----ATTGCACTTTGGC--TGGGGTACCTC---GGGTT--------AA-----ACT-----GTAG------------------------TATCAAG----TACCAGTAACAGTGA---------------------------------------------------------ATGAAC-AAGAA------CTT-CTCAATGCAAAAAAAAAAAGAATATAATACTCTGGA-----------ATGATTAATTTTA-----------AAT---AACGCAAAAACCTTTTCTATAT-AGTAACG--------------------------------ATACACGCA---TAAACTACTA-AAAATAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGT------
droEle1 scf7180000490713:154053-154459 + GCA------CCGTATGCCCCCCAAGCGT---GCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGAG---CCC-TTGCATGCCTT---T-----------CTA------------ATT----------CTTT-CAGCCGTAGATTCGTAGAGCCGGGGTCT------AT------------TATATAAAATCGA---------------------------------------CTCTTACCTTCC---ACGCA------CTCCCCAAGTCTTGTGG----GTTGCACTTTGGT--TGGGATTCCTT---GGGCA--------AG-----CTT-----GTAG----AG------------------TATCAT-----TACCAATACCAATAA---------------------------------------------------------ATGAAC-AAGAA------CTT-ATTAATGCAA-------AAGTATGTAATACTTTGTA-----------ATGATTTATTTAA-----------AAT---AACAAACAAC--TTTTTTATAT-AGTAATGA--------TT--------------------GATACACGCAACGTAACTTACTA-AAAATAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCAACAAACGCAGCGGCATATAAACGTCC----
droRho1 scf7180000780011:13523-13918 - ACA------CCGTATGCCCCCCAAGCGT---CCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGAG---CCC-ATGCATGATTT---T-----------CTA------------ATT----------CTTT-CAGCCGTAGATTCGTAGTGCCGGGGTCT------AC------------TAGATAAGATTTC---------------------------------------CCTTTGCCTTCC---ACGCA------CTCCCCAATATTTTTGA----GTTGCACTTTGGA--TGGGGCTCCTT---GGGTC--------AT-----ATT-----GGAG------------------------TATCAG-----TACCAATACCAGTGA---------------------------------------------------------ATGAAC-AAGAA------CTT-CTCAATGCAA-------AAATATATAATACTCTTGA-----------ATGATTAATTTTA-----------AAT---AACGAAATAC--TTTTTTATAT-AGTAATA--------------------------------ATACACGCA---TAACTTACTA-AAAATAATAATGAA--A----CA-ATTTTATAGCACGTCCATCAATAATACCAACAAACGCAGCGGCATATAAACGT------
droBia1 scf7180000302143:2402535-2402940 + GCA------CCGTATGCCCCCCAAGCGT---CCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGTG---CAA-ATGCATGCTAT---T-----------CTA------------TCC----------CTTT-CAGCCGTAGATTCGTAGAACCGGGGTCT------AT------------TAGATAAAAGCGC---------------------------------------TTTCTACCTTCC---G-------------TCCCCGTTTTGTGGACCGTTTGCACCTTTGA--TGGGGCTCCTT---GGGTT--------AT-----ATT-----GTAGTAGCAG------------------AACCAG-----TACCAATACCAATAA--------------------------------------------------TCA----ATGAAC-AATAA------CTT-CTCAATGCAA-------AACTATATAATACTCTGGA-----------ATGATTAAATTTA-----------CAT---AACGAACAAC--TTTTTTATAT-AGTAATGA------------------------------TATACACGCA---TAACATACTA-AAAGTAATAATGAA--C----AA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTCC----
droTak1 scf7180000415739:163525-163947 - GCA------CCGTATGCCCCCCAAGCGT---CCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGAG---CCC-ATGCATGTTTT---T-----------CTG------------TTC----------CTTT-CAGCCGTAGATTCGTAGTGCCGGGGTCT------AT------------TAGATAAGATCGC---------------------------------------TTTCCGCCTTCC---AAGCA------CTGTCCCAATTAAAGGG----GTTGCACTTTGGA--TGGGGCTCCTT---GGGTT--------AG-----ATT-----GTAGTATCAGTATCAGTACCTGTTCCGATACCAG-----TACCAAAACCAGTGA---------------------------------------------------------ATGAAC-AATAA------CTT-CTCAATGCAA--------AATATATAATACTCTGGA-----------ATGATTAATTTTA-----------AAT---AACAAAAAAC--TTTTTTATAT-TGTAATGA------------------------------TATATGCGCA---TAACATACTA-AAAATAATAATAAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTCC----
droEug1 scf7180000409672:6211128-6211500 - GCA------CCGTATGCCTCCCAAGCGC---CCACCCACAGGCTATGAGTACAGCAAACGTAAGTTGAG---ACCAATGCATACTTA---A-----------CTG------------CTC----------CTTT-CAGCCGTAG--------TGTCGATA--T------ATTACACAATC-ATTAGATAAGATTGC---------------------------------------TTA--------C---ACAAA------CAATCCCAGTTTTATGG----GATGCACTTTGGA--TGGGGTTCCTT---GGGTT--------AG-----ATT-----GTAG------------------------TATCAA-----TACCAATACAAGTGA---------------------------------------------------------ATGAAC-AAAAA------ATT-CTCAATGCAA-------AACTGCATAATATTCT-------------------TAATTTTA-----------AAT---AACAAAAAAA--GTCT-T------------A------------------------------TATACTCGCA---TAACATAATAAAAAATAATAATGAA--A----CA-ATTTTATAGCACGTCCATCAATAATATCTACAAACGGAGCGGCATATAAACGT------
dm3 chr2R:18297482-18297865 - ACA------TCGTATGCCCCCCAAGCGT---CCGCCTACGGGCTATGAGTACAGCAAACGTAAGTTAAT---CCC-AAGCATGCATTCTTT---------------------------------------------------ATTTGGGTAGTGCCGGGGTCT------AT------------GACATAAGATCGA---------------------------------------TTTTTCCCCTGA---ATGCA-----------CCAGTTTTTTGG----GATGCACCTTTGA--CAGGA-ACTTT---GGGTTATAGATT-AGATTAGATC-----ATAC------------------------TATCAA-----AACCAATAACTGTGA---------------------------------------------------------TTGAGC-AAGC---------T-CTCAGATCA--------AACTATATAATACACTGGA-----------ATGATTAATATTA-----------TGC---AACGATTCAC--TCCTT--TAT-AGTAATTA------------------------------CATACACGCA---TAAAATACTA-CAAATAATAATCAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGT------
droSim2 2l:20501645-20501975 - dsi_17093 ------------TATGCCCCCCAGTCAT---CCGCCTACGAGCTATGAGTACAGGAAACGTAAGTAT------------------------------------------------------------------------------TTGGTAGTGCCGGGGTCC------AT------------TACATAAGATTG---------------------------------------------------------------------------TTTTATGG----GATG--------------------------GGATATAGATTTAGATACGAT-------TAT------------------------TATCGAGTATTAACTGATAACAGTGA---------------------------------------------------------ATGAGC-AAGA---------T-CTCAGATCA--------AACTATATAAAACACTAGA-----------ATGACTAATATTA---TAATATTATAC---AACGATTAAC--TTCTT--TAT-AGTAATTA------------------------------CATACACGCA---TAAATTACTA-CTAATAATAATCAA--C----CA-ATTTTATAGCACTTCCATTAATAATACCGGAAAACGCAGTGGCATATAAACGTCCATAT
droSec2 scaffold_9:1605529-1605894 - ACA------TCGTATGCCCCCCAAGCGT---CCTCCTACTGGCTATGAGTACAGCAAACGTAAGTTGAT---CCC-AAGCATGCATTCTTT---------------------------------------------------ATTTGGGTAGTGCCGGGGTCT------AT-----A------AACATAATATAGA---------------------------------------TTTC-CCCCTAA---AGGCA------CTTCGCCAGTTTTTGGG----GAT---------------------TT---GGGTTATAGATT-AG-----ATC-----ATAC------------------------TATCAA-----AACCAATAACAGTGA---------------------------------------------------------TTGAGC-AAGC---------T-CTCAGATCA--------AACTATATAATACACTGGA-----------ATGATTAATATTA-----------TGC---AACGATTCAC--TTCTT--TAT-AGTAATTA------------------------------CATACACGCA---TAACTTACTA-CAAATAATAATCAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCTGCGGCATATAAACGT------
droYak3 2R:18047221-18047580 - ACA------TCGTATGCCTCCCAAGCGT---CCCACTACGGGCTATGAGTACAGCAAACGTAAGTGGAA---CCC-AAGCATGCATTCTTAAT---------TT---------------------------------------GTTTCTTAGTGCCGGGGCCT------AT------------TACA--------------------------------------------------------------------------CTCCCCCATTTTGAGGG----GATGCACCTTTGA--TTTGAATC-TT---GGGTCACAGAAT-AG-----ATT-----ATAG------------------------TATCAA-----AACCGATAACAGTGA---------------------------------------------------------ATGAGC-AAGA---------T-CTTGAAACA--------AACTATATAACACTCTGGA-----------ATGATTAATATTA-----------AAG---AACAAACCAC--TTCC---TAT-AGTAATTA------------------------------CATACACGCA---TAAACTACTA-CAAATAATAATCAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGT------
droEre2 scaffold_4845:12437916-12438256 - ACA------TCGTATGCCCCCCAAGCGT---CCTACCACGGGCTATGAGTACAGCAAACGTAAGTGGAA---CCC-AAGCATGCATTCTTA---------------------------------------TTTT-CT--------TTCTTAGTGGCGGGGTCT------AT------------TCC--------------------------------------------------------------------A------CTCCGCCAGTTGTATGG----GATGAACCTTTGA--TTAGAATC-TT---GGGTGT---------------C--------AG------------------------TATCAA-----AACAAATAACAATGA---------------------------------------------------------ATGAGC-AAGA---------T-CTCGAATCA--------AACTATATAAT-CTCTGGA-----------ATGATTAATA--------------------ATCGAACCAC--TTCC---TAT-AGTAATTA------------------------------CACACACGCA---TAAACTACTA-CAAATAATAATAAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGT------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TCA------TCGCATGCC---CAAGCGTAGCGCACCATCGGGCTATGAATACACCAAACGTAAGTTGAG---CCA-ACGA------------TTTGTAGCTAG------------------------------------------------------AAAACC------CT------------TAAAA-----CA-----------------------------------------------------------A------CTTATTTAGG--GTGGG----GAT-----TGGGTATTGGGATT--------------------C-------------------------------------------AACCA-----AATAAATAATATCGA---------------------------------------------------------TTGCAT-AAAC---------T-ATTAAAAAA--------AAAAAAACAA-GCATTTGAA--------CGATGACTAATTTTTA--A-------AAT---AACAAAT------TTTCTATTT-A-TAACT--------TTA--TATACCTACTGAATTTT-TACGTACATA---TAACATATTA-AAAAT------GAA-------TA-ATTTTATAGCACGCCCATCAATAATACCAACAAACGCAGCTGCATATAAACGGCCTCAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................AGCGTAGCGCACCATCGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000000002000000000000000000000000000000000000000000
..............................................................AGTTGAG---CCA-ACGA------------TTTGTAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000100000000000000000000000000000000000000000000000000000
....................................ATCGGGCTATGAATACACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TTAGG--GTGGG----GAT-----TGGGTATTGGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................G--GTGGG----GAT-----TGGGTATTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAACAAACGCAGCTGCATAT............2211.001000000000000001000000000000000000000000000000000000000000000000
...............GCC---CAAGCGTAGCGCACCATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
................................................ATACACCAAACGTAAGTTGAG---C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000100
droMoj3
TCA------TCGCATGGC---CAAGCGTGGCGCACCATCTGGATATGAATACACCAAACGTAAGTTAAG---CCA-ACGA------------TTCGTAGCGAGTA------------TACCTTAGAAATCCCAACTATGAAC--------------------------------------------AA-----CAACATAACAATGGGGGATCTTCTCT--TAGTGCGGGTCGATACGAAATCTAA-----ATCG------T--TATAAATCAAATTG----ATTGCATTATCTA--TG--------------CAA--------AT-----GTC-----TA----------------------------------------------------------------------------------------------------------------------------------------------------AATATTAAAATGCAGTTGAGCTAACTGATGATGACTAATTCTTATGC-------AAT---AACAAACTAT--CTCTCTACATA--------TAATAAC-TC--TATACCTATTCAATTTA-TATAAATGTA---TAACATATTT-AAAAT------GCA--T----AACATTTTATAGCACGCCCATCAATAATACCAACAAGCGCAGCTGCATATAAACGGCCACAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TCA------TCGGATGCC---CAAGCGTGGAGCACCATCAGGATATGAATACAACAAACGTAAGTGGAT---------G----CATTTTA--TTTGTGGT-TGTG------------TTTCTTTCAGATCCTTG-TATAAGTCAATACTTATTTTTGGAGGGT------AT----------------------TTC---------------------CTGTTTTT---------TTTTTTACCT--------TGA------T-AATAAAGTAATATTG----ATTGCATTTTGGA--C--------------------------------------------------------------------------------------AAACAGTG--------------------------------------------------------------------CA-A----TTG-T-TATAACA----------TATAATAATGCATTTGAG-------GCGATGACTAATTTTT-----------ATAAATAACAAAA------TTTCTATTT-ATGAACTA-TATAAC-TA--TATACCTATTCAAATTG-TTGATAACTA---TAACATATTA-AA------AATGCA--T----AA-ATTTTATAGCACGCCCATCAATAATACCAACAAACGCAGCCGCATATAAACGACCTCAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GCA------TCGTATGCCTATAAAACGAGAGCCACACGCCGGATATCAGTACAGCAAACGTAAGTTCTT-TGACA-C-------------------------------------------------------------------------AGTTTCCGTATTT------AG------------TTCATTCTATCAA---------------------------------------CA-CTACAAACA---ACGTT------C---CCCACCCATCCCG----GTAGCATCTTGATAATGGGTAT-CTA---AGTAT--------AT-----ATT-----TAAA------------------------TATAA--------------TAAAATATTCAAAACTTAACCAAATTAAACTTATCTATATATAACAAACAAAAAAAAGAAAAGAAA-TACCAAA-A------AAT-ATTA-------------------------CAAAAAAT-------GAAAAGAAAAAA----------------AT------------------------------------------AA--TAAACCTTAACTAAATA-TAAACATATA---TAATATA-------------------------TA-ATTTTATAGCACGTCCATCAATAATACCAACCAATGCGGCTGCTTATAAACGTCCACAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATAATACCAACCAATGCGGCT..................2611.00100100
...................ATAAAACGAGAGCCACACGCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAACCAATGCGGCTGCT...............1911.00110000
..........CGTATGCCTATAAAACGAGAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
dp5
GCATCCACATCGTATGCCTCCCAAGCGTGGCCCACCCACCGGCTATGAGTACAGCAAACGTAAGTGGAGTTGATA-ACG----CCTTT------------------------------TG----------TTTA-CAGTCGTAG-TTCGTATAGACTAGATCT------AT------------TAGA-----TCGC---------------------C-----------------TCTTTTCC--------CTCA------C--TCTAAATTCTAGGG----GTCGCACTTTCGA--TGGGTTTCGTT---GGGGT--------AG-----TTT-----GTAG------------------------C-----------------ACAAGTGATTGA-AACT---------------------------------------------------------GAA-A----CTT-C-TAAAGCAAATAAAA----------------AAGA-----------ATGACTAATTTTA---T-------AAT---AACAATCAAA--CGTTTTATATT--------TAACG--ACC--TAAACCATT-----TTT-GAAACACGCA---TAACATACTA-AAAGTAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAATGCAGCGGCTTATAAACGTCCACAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................TACAGCAAACGTAAGTGGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.........TCGTATGCCTCCCAAGCGTGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000000
droPer2
GCATCCACATCGTATGCCTCCCAAGCGTGGCCCACCCACCGGCTATGAGTACAGCAAACGTAAGTGGAGTTGATA-ACG----CCTTT------------------------------TG----------TTTA-CAGTCGTAG-TTCGTATAGACTAGATCT------AT------------TAGA-----TCTC---------------------------------------CT---ATTTTCC----CTCA------C--TCTAAATTCTAGGG----GTCGCACTTTCGA--TGGGTTTCGTT---GGGGT--------AG-----TTT-----GTAG------------------------CAC--------------AACAAGTGATTGA-AACT---------------------------------------------------------GAA-A----CTT-C-TAAAGCAAATAAAA----------------AAGA-----------ATGACTAATTTTA---T-------AAT---AACAATCAAA--CGTTTTATATT--------TAACG--ACC--TAAACCATT-----TTT-GAAACACGCA---TAACATACTA-AAAGTAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAATGCAGCGGCTTATAAACGTCCACAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................CT------AT------------TAGA-----TCTC---------------------------------------CT---ATTTTCC----CTCA------C--C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
droAna3
GCA------CCGTTTGCCCCCAAAACGC---CCGCCCACGGGCTACGAGTATAGTAAACGTAAGTGGT----CCC-TTGCACGCATTCTTT-----------CCG------------ATC----------TTTT-CATCCTTAGAGAATTAATGCTGGGATCC------GT------------TAGATTGGATCCG--------------------------------------CCTGCAGCCTCCA---GTTCA------CCTTTTACATTTTGCGG----GTTGCACTTTTGA--TGGGCTTCCTTTTGGGGGT--------AG-----ACAGTATTGTAG-----------------------------------------AACCAGTGAATGA-AACA----------------------------------AAA---ACAAAAGAAAAAACCAAA-A------AAT-CTTCATGCA---------ATAATATAATACTTTGGA-----------ATGAATAATTTTA-----------AAT---AATAACCA-----TTTGTATATT--------TAATG--ATC--TAAACCATT-----CTTAATTATACACA---TAACCAGTTT-AAAGTAATAATGAAAATCAATGA-ATTTTATAGCACGTCCATCAATAATACCAACAAGCGCTGCGGCTTATAAACGT------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................ACA----------------------------------AAA---ACAAAAGAAAAAACC....................................................................................................................................................................................................................................................................2111.001010000
.........................................................................................................................................................................GT------------TAGATTGGATCCG--------------------------------------CCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
................................................................................................................................................................TCC------GT------------TAGATTGGATCCG--------------------------------------CCTGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------AAA---ACAAAAGAAAAAACC....................................................................................................................................................................................................................................................................1960.171010000
droBip1
GCA------CCGTTTGCCCCCAAAACGC---CCGCCCACGGGCTACGAGTATAGTAAACGTAAGTGGT----CCC-TTGCACGCATTCTTT-----------CCG------------ATC----------CTTT-CATCCTTAGAGAATTAATGCTGGGATCC------GT------------TAGATTGGATTCG--------------------------------------CTTGCAGCCTCCA---ATTCA------CCTTTTAGATATTGCGG----GTTGCACTTTTGA--TGGGCTTCCTT-TGGGGGT--------AG-----ACA-----GTAG-----------------------------------------AAACAGTGAATGA-AACA----------------------------------AAA---ACAAA------AAC-AAA-AAATAAGT-TGCAATATGCA---------ATAATATAATACTCTGGA-----------ATGACTAATTTTA-----------AAT---AATAACCA-----TTTGTATATT--------TAATG--ATC--TAAACCATT-----CCTAATTATACGAA---AAACCTCTTA-AAAGTAATAATGAA--TCAATGA-ATTTTATAGCACGTCCATCAATAATACCAACAAGCGCTGCGGCTTATAAACGT------SizeHit CountTotal NormTotal
No Reads
droKik1
GCA------CCGTTTGCCCCCCAAGCGC---GCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGCA-TGACC-AAGCATGATTT---T-----------TTGCCCTCTAGCTACATT----------TTTT-CAGCCTTAGAT---------------CTACATATATAATTATATCTATTAGA-----TCCC---------------------------------------TTCTTTCCATCCTCATTGCATTCACTCCATT--TA-TTTATGGGGC-ACAGCACTTTGAA--TGGGTTTCCTT---GGGAT--------AG-----ATT-----GTAG------------------------CAACA---------CAGAACCAGTGA---------------------------------------------------------ATGAAC-GAGAA-AT--GCTT-CTCAATGCAA--------ATAACATAATTTACTAGA-----------AAAATT----TTC-----------AA----AATAAACTAA--AAT---ATCTT-TATTC--TAATG--ATCGATAAACTTTT-----TT---AAAT---AA---TAACTGACTA-AAAATAATAATGAA--C----AA-ATTTTATAGCACGTCCATCAATAATATCAGCAAACGCAGCGGCATATAAACGA------SizeHit CountTotal NormTotal
No Reads
droFic1
GCA------CCGTATGCCCCCCAAGCGT---CCACCTACGGGCTATGAGTACAGCAAACGTAAGTTGGGTCGCTC-ATGCATGCTCT---T-----------CTA------------TCC----------CTCT-CAGCTGTAGATTCGTAGTGCCGGGGTCT------AG------------TAGTTAAGATCGC---------------------------------------CT-CTGCCTTCC---ACGCA------CCATTCCAATTCTATGG----ATTGCACTTTGGC--TGGGGTACCTC---GGGTT--------AA-----ACT-----GTAG------------------------TATCAAG----TACCAGTAACAGTGA---------------------------------------------------------ATGAAC-AAGAA------CTT-CTCAATGCAAAAAAAAAAAGAATATAATACTCTGGA-----------ATGATTAATTTTA-----------AAT---AACGCAAAAACCTTTTCTATAT-AGTAACG--------------------------------ATACACGCA---TAAACTACTA-AAAATAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGT------SizeHit CountTotal NormTotal
No Reads
droEle1
GCA------CCGTATGCCCCCCAAGCGT---GCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGAG---CCC-TTGCATGCCTT---T-----------CTA------------ATT----------CTTT-CAGCCGTAGATTCGTAGAGCCGGGGTCT------AT------------TATATAAAATCGA---------------------------------------CTCTTACCTTCC---ACGCA------CTCCCCAAGTCTTGTGG----GTTGCACTTTGGT--TGGGATTCCTT---GGGCA--------AG-----CTT-----GTAG----AG------------------TATCAT-----TACCAATACCAATAA---------------------------------------------------------ATGAAC-AAGAA------CTT-ATTAATGCAA-------AAGTATGTAATACTTTGTA-----------ATGATTTATTTAA-----------AAT---AACAAACAAC--TTTTTTATAT-AGTAATGA--------TT--------------------GATACACGCAACGTAACTTACTA-AAAATAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCAACAAACGCAGCGGCATATAAACGTCC----SizeHit CountTotal NormTotal
No Reads
droRho1
ACA------CCGTATGCCCCCCAAGCGT---CCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGAG---CCC-ATGCATGATTT---T-----------CTA------------ATT----------CTTT-CAGCCGTAGATTCGTAGTGCCGGGGTCT------AC------------TAGATAAGATTTC---------------------------------------CCTTTGCCTTCC---ACGCA------CTCCCCAATATTTTTGA----GTTGCACTTTGGA--TGGGGCTCCTT---GGGTC--------AT-----ATT-----GGAG------------------------TATCAG-----TACCAATACCAGTGA---------------------------------------------------------ATGAAC-AAGAA------CTT-CTCAATGCAA-------AAATATATAATACTCTTGA-----------ATGATTAATTTTA-----------AAT---AACGAAATAC--TTTTTTATAT-AGTAATA--------------------------------ATACACGCA---TAACTTACTA-AAAATAATAATGAA--A----CA-ATTTTATAGCACGTCCATCAATAATACCAACAAACGCAGCGGCATATAAACGT------SizeHit CountTotal NormTotal
No Reads
droBia1
GCA------CCGTATGCCCCCCAAGCGT---CCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGTG---CAA-ATGCATGCTAT---T-----------CTA------------TCC----------CTTT-CAGCCGTAGATTCGTAGAACCGGGGTCT------AT------------TAGATAAAAGCGC---------------------------------------TTTCTACCTTCC---G-------------TCCCCGTTTTGTGGACCGTTTGCACCTTTGA--TGGGGCTCCTT---GGGTT--------AT-----ATT-----GTAGTAGCAG------------------AACCAG-----TACCAATACCAATAA--------------------------------------------------TCA----ATGAAC-AATAA------CTT-CTCAATGCAA-------AACTATATAATACTCTGGA-----------ATGATTAAATTTA-----------CAT---AACGAACAAC--TTTTTTATAT-AGTAATGA------------------------------TATACACGCA---TAACATACTA-AAAGTAATAATGAA--C----AA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTCC----SizeHit CountTotal NormTotal
No Reads
droTak1
GCA------CCGTATGCCCCCCAAGCGT---CCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGAG---CCC-ATGCATGTTTT---T-----------CTG------------TTC----------CTTT-CAGCCGTAGATTCGTAGTGCCGGGGTCT------AT------------TAGATAAGATCGC---------------------------------------TTTCCGCCTTCC---AAGCA------CTGTCCCAATTAAAGGG----GTTGCACTTTGGA--TGGGGCTCCTT---GGGTT--------AG-----ATT-----GTAGTATCAGTATCAGTACCTGTTCCGATACCAG-----TACCAAAACCAGTGA---------------------------------------------------------ATGAAC-AATAA------CTT-CTCAATGCAA--------AATATATAATACTCTGGA-----------ATGATTAATTTTA-----------AAT---AACAAAAAAC--TTTTTTATAT-TGTAATGA------------------------------TATATGCGCA---TAACATACTA-AAAATAATAATAAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTCC----SizeHit CountTotal NormTotal
No Reads
droEug1
GCA------CCGTATGCCTCCCAAGCGC---CCACCCACAGGCTATGAGTACAGCAAACGTAAGTTGAG---ACCAATGCATACTTA---A-----------CTG------------CTC----------CTTT-CAGCCGTAG--------TGTCGATA--T------ATTACACAATC-ATTAGATAAGATTGC---------------------------------------TTA--------C---ACAAA------CAATCCCAGTTTTATGG----GATGCACTTTGGA--TGGGGTTCCTT---GGGTT--------AG-----ATT-----GTAG------------------------TATCAA-----TACCAATACAAGTGA---------------------------------------------------------ATGAAC-AAAAA------ATT-CTCAATGCAA-------AACTGCATAATATTCT-------------------TAATTTTA-----------AAT---AACAAAAAAA--GTCT-T------------A------------------------------TATACTCGCA---TAACATAATAAAAAATAATAATGAA--A----CA-ATTTTATAGCACGTCCATCAATAATATCTACAAACGGAGCGGCATATAAACGT------SizeHit CountTotal NormTotal
No Reads
dm3
ACA------TCGTATGCCCCCCAAGCGT---CCGCCTACGGGCTATGAGTACAGCAAACGTAAGTTAAT---CCC-AAGCATGCATTCTTT---------------------------------------------------ATTTGGGTAGTGCCGGGGTCT------AT------------GACATAAGATCGA---------------------------------------TTTTTCCCCTGA---ATGCA-----------CCAGTTTTTTGG----GATGCACCTTTGA--CAGGA-ACTTT---GGGTTATAGATT-AGATTAGATC-----ATAC------------------------TATCAA-----AACCAATAACTGTGA---------------------------------------------------------TTGAGC-AAGC---------T-CTCAGATCA--------AACTATATAATACACTGGA-----------ATGATTAATATTA-----------TGC---AACGATTCAC--TCCTT--TAT-AGTAATTA------------------------------CATACACGCA---TAAAATACTA-CAAATAATAATCAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGT------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................ATAAGATCGA---------------------------------------TTTTTCCCCTGA---ATGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GGCTATGAGTACAGCAAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AAGCGT---CCGCCTACGGGCTATGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................ACGGGCTATGAGTACAGCAAACCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CCCCCAAGCGT---CCGCCTACGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAC--TCCTT--TAT-AGTAATTA------------------------------CATA.......................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTGGA-----------ATGATTAATATTA-----------TGC---........................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...........................T---CCGCCTACGGGCTATGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TTTGA--CAGGA-ACTTT---GGGTTATAGA............................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATATAATACACTGGA-----------ATGATT................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCGACAAACGCAGCGGC................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAGCACGTCCATCAATAATA.................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................AACTGTGA---------------------------------------------------------TTGAGC-AAGC---------T-CTCAGA...............................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAA--C----CA-ATTTTATAGCACGTCCA..........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...................CCCAAGCGT---CCGCCTACGGGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-ATTTTATAGCACGTCCAT.........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACCGACAAACGCAGCGGCATATA...........2611.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGCAGCGGCATATAA..........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACCGACAAACGCAGCGGCATAT............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AACGATTCAC--TCCTT--TAT-AGTAATTA------------------------------CATACAC....................................................................................................3511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGA---------------------------------------------------------TTGAGC-AAGC---------T-CTC..................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCAATAATACCGACAAAC........................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGA-----------ATGATTAATATTA-----------TG............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..A------TCGTATGCCCCCCAAGCGT---CCGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................AACTGTGA---------------------------------------------------------TTGAGC-AAGC---------.......................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--C----CA-ATTTTATAGCACGTC............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
.................CCCCCAAGCGT---CCGCCTACGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACCGACAAACGCAGCGGC................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCAATAATACCGACAA..........................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AAGCGT---CCGCCTACGGGCTATGAGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................CCCCAAGCGT---CCGCCTACGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATAATACCGACAAACGCAGC...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................ATAACTGTGA---------------------------------------------------------TTGAGC-AAGC---------T-.....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
......................AAGCGT---CCGCCTACGGGCTATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CGGGCTATGAGTACAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAATAATCAA--C----CA-ATTTTATAG..................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
------------TATGCCCCCCAGTCAT---CCGCCTACGAGCTATGAGTACAGGAAACGTAAGTAT------------------------------------------------------------------------------TTGGTAGTGCCGGGGTCC------AT------------TACATAAGATTG---------------------------------------------------------------------------TTTTATGG----GATG--------------------------GGATATAGATTTAGATACGAT-------TAT------------------------TATCGAGTATTAACTGATAACAGTGA---------------------------------------------------------ATGAGC-AAGA---------T-CTCAGATCA--------AACTATATAAAACACTAGA-----------ATGACTAATATTA---TAATATTATAC---AACGATTAAC--TTCTT--TAT-AGTAATTA------------------------------CATACACGCA---TAAATTACTA-CTAATAATAATCAA--C----CA-ATTTTATAGCACTTCCATTAATAATACCGGAAAACGCAGTGGCATATAAACGTCCATATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................ACAGGAAACGTAAGTAT------------------------------------------------------------------------------TTGGTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.33100000000001000000
.................................................................................................................................................................................................................................................................................................................................TTTAGATACGAT-------TAT------------------------TATCGAGTAT....................................................................................................................................................................................................................................................................................................................................................2530.33100000000001000000
droSec2
ACA------TCGTATGCCCCCCAAGCGT---CCTCCTACTGGCTATGAGTACAGCAAACGTAAGTTGAT---CCC-AAGCATGCATTCTTT---------------------------------------------------ATTTGGGTAGTGCCGGGGTCT------AT-----A------AACATAATATAGA---------------------------------------TTTC-CCCCTAA---AGGCA------CTTCGCCAGTTTTTGGG----GAT---------------------TT---GGGTTATAGATT-AG-----ATC-----ATAC------------------------TATCAA-----AACCAATAACAGTGA---------------------------------------------------------TTGAGC-AAGC---------T-CTCAGATCA--------AACTATATAATACACTGGA-----------ATGATTAATATTA-----------TGC---AACGATTCAC--TTCTT--TAT-AGTAATTA------------------------------CATACACGCA---TAACTTACTA-CAAATAATAATCAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCTGCGGCATATAAACGT------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................CCTCCTACTGGCTATGAGTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
droYak3
ACA------TCGTATGCCTCCCAAGCGT---CCCACTACGGGCTATGAGTACAGCAAACGTAAGTGGAA---CCC-AAGCATGCATTCTTAAT---------TT---------------------------------------GTTTCTTAGTGCCGGGGCCT------AT------------TACA--------------------------------------------------------------------------CTCCCCCATTTTGAGGG----GATGCACCTTTGA--TTTGAATC-TT---GGGTCACAGAAT-AG-----ATT-----ATAG------------------------TATCAA-----AACCGATAACAGTGA---------------------------------------------------------ATGAGC-AAGA---------T-CTTGAAACA--------AACTATATAACACTCTGGA-----------ATGATTAATATTA-----------AAG---AACAAACCAC--TTCC---TAT-AGTAATTA------------------------------CATACACGCA---TAAACTACTA-CAAATAATAATCAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGT------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................ACGGGCTATGAGTACAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000
.................................CACTACGGGCTATGAGTACAGCAAACCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAGCACGTCCATCAAT.....................................2111.00101000000000
............TATGCCTCCCAAGCGT---CCCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................AACCGATAACAGTGA---------------------------------------------------------ATGAGC-....................................................................................................................................................................................................................................................................2111.00100000010000
...........GTATGCCTCCCAAGCGT---CCCACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCAGCGGCATATAAAC........2011.00100000010000
droEre2
ACA------TCGTATGCCCCCCAAGCGT---CCTACCACGGGCTATGAGTACAGCAAACGTAAGTGGAA---CCC-AAGCATGCATTCTTA---------------------------------------TTTT-CT--------TTCTTAGTGGCGGGGTCT------AT------------TCC--------------------------------------------------------------------A------CTCCGCCAGTTGTATGG----GATGAACCTTTGA--TTAGAATC-TT---GGGTGT---------------C--------AG------------------------TATCAA-----AACAAATAACAATGA---------------------------------------------------------ATGAGC-AAGA---------T-CTCGAATCA--------AACTATATAAT-CTCTGGA-----------ATGATTAATA--------------------ATCGAACCAC--TTCC---TAT-AGTAATTA------------------------------CACACACGCA---TAAACTACTA-CAAATAATAATAAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGT------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................TACCACGGGCTATGAGTACAGCAAACCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGA-----------ATGATTAATA--------------------ATCG....................................................................................................................................................................1911.0010000010

Generated: 05/17/2015 at 04:44 AM