dvi_791

exon [dvir_GLEANR_15284:2]; CDS [Dvir\GJ14973-cds]; exon [dvir_GLEANR_15284:1]; CDS [Dvir\GJ14973-cds]; intron [Dvir\GJ14973-in]

##################################################--------------------------------------------------------------------################################################## CAAAGAAATGCGAATTCTTATGCTCGGCTTGGACGCTGCTGGCAAAACAAGTGAGTGGTCAATGCTTATCTAAATCGTTATTTATATAATTTTTATGTATATTGAAACGTTTTCGCAGCGATCCTCTATAAACTGAAACTGGGTCAATCGGTTACAACGATACCCACG ************************************************(((((...((((((..(((.((((..(((((....))))).)))).)))))))))......)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060663 160_0-2h_embryos_total	M061 embryo	SRR060659 Argentina_testes_total	SRR060667 160_females_carcasses_total	V047 embryo	M027 male body	M047 female body	SRR060660 Argentina_ovaries_total	SRR060668 160x9_males_carcasses_total	SRR060666 160_males_carcasses_total	SRR060681 Argx9_testes_total
..........................................................................................................................................CTGGGTCAATCGGTTACAACG.........	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................AACGATCCTCTATAAACTGAAACT............................	24	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............TCTTATGCTCGGCTTGGA.......................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................CTGATGCTCGGCTTGGAC......................................................................................................................................	18	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...AGAAATGCGAATTCTTATGCTCGGCTT..........................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............TCTTATGCTCGGCTTGGAC......................................................................................................................................	19	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...............TCTTATGCTCGGCTTGGACGCTGCTGGC.............................................................................................................................	28	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................TGAAACTGGGTCAATCGGTTACAACG.........	26	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..AAGAAATGCGAATTCTTATGCT................................................................................................................................................	22	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................GTCAATCGGTTACAACGCTA......	20	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
...............TCTTGTGCTCGGCTTGGACGC....................................................................................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................GGGTCAATCGGTTACAAC..........	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................CTTATGCTCGGCTTGGAC......................................................................................................................................	18	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...AGAAATGCGAATTCTTATGCTT...............................................................................................................................................	22	1	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0
....................................TGCTTGGAAAACAAGTGGGTGG..............................................................................................................	22	3	3	0.33	1	0	0	0	0	1	0	0	0	0	0	0
....GAAATGCGTATTCTTATGGTT...............................................................................................................................................	21	3	7	0.14	1	0	0	0	0	0	0	0	0	0	1	0
......AATGCGAACATTTATGCTCG..............................................................................................................................................	20	3	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1

GTTTCTTTACGCTTAAGAATACGAGCCGAACCTGCGACGACCGTTTTGTTCACTCACCAGTTACGAATAGATTTAGCAATAAATATATTAAAAATACATATAACTTTGCAAAAGCGTCGCTAGGAGATATTTGACTTTGACCCAGTTAGCCAATGTTGCTATGGGTGC ************************************************(((((...((((((..(((.((((..(((((....))))).)))).)))))))))......)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060687 9_0-2h_embryos_total
.................................................................................................................................................TTAGCAAGTGTTGGTATGG....	19	3	11	0.09	1	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_10324:826994-827161 -	dvi_791	CAAAGAAATGCGAATTCTTATG---------------------------------------------------------------------------------------------------------------CTCGGCTTGGACGCTGCTGGCAAAACAAGTGAGTGGTCAAT----GCTTATCTAAAT-CG-TTA-------------------------------------------------------------------------------------------------------------------TTT--------ATATAATTTTTATGTATATTGAAACGTTTTCGCAGCGATCCTCTATAAACTGAAACTGGGTCAATCGGTTACAACGATACCCACG----------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6496:2677833-2678006 -		AA-GTAAACTTGAATTTAATTC------------------------------------------ATT------------------------------------------------------------------ATTG---TAAATAT---------------------------------------------------TTCCCCTTAG-TAAATAAGAATTAAATTGTTATGAT-----------------TGTCACTTGATCA------------------ACTTCATTCAATGATATATGA----------------------------------TATATTTA-ATACTTTTGCAGCGATTCTCTATAAACTGAAACTAGGTCAATCAGTAACAACGATACCAACG----------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15245:8518751-8518914 -		CAAAGAAATGCGAATTCTTATG---------------------------------------------------------------------------------------------------------------CTCGGCTTGGACGCTGCTGGCAAAACAAGTGAGT-------------------------------------------------------------------------------------------------------------------TCAAAATTGAAATATTTGATGAATGGCTTATTAAATTAAAACTCAAT---------C---------TCCTTTACAGCGATCCTCTATAAACTGAAACTGGGGCAATCAGTGACAACGATACCCACG----------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004510:1397339-1397510 +		CAAGGAAATGCGAATCCTTATG---------------------------------------------------------------------------------------------------------------CTCGGTTTAGATGCAGCCGGCAAGACAAGTGAGTAT--AC-------------------------TCCCCCTTTTTTA-----------------------------------------------------------------------------AAGAAAAAAATGATCATTAACTTTATGTACTTATATTTTGT---------------------TCCCTCAGCGATTCTTTATAAACTTAAACTAGGGCAATCAGTGACAACGATACCCACA----------------------------------------------------------------------------------------------------------------
dp5	3:11324204-11324373 +		CAAAGAGATGCGAATTCTCATG---------------------------------------------------------------------------------------------------------------CTCGGGCTGGACGCGGCGGGCAAAACAAGTAAGCAG--G------------------------------------------------------------------------------CCGCTAGCCGGCGA------------------TCGACATTACAAGGTGCAAGAACTAATTTACTC--------CCCAAT---------------------TCTCGCAGCGATCCTGTACAGACTCAAACTAGGGCAATCGGTTACAACGATACCCACT----------------------------------------------------------------------------------------------------------------
droPer2	scaffold_4:6727552-6727721 +		CAAAGAGATGCGAATTCTCATG---------------------------------------------------------------------------------------------------------------CTCGGGCTGGACGCGGCGGGCAAAACAAGTAAGCAG--G------------------------------------------------------------------------------CCGCTAGCCGGCGA------------------TCGACATTACAAGGTGCAAGAACTAATTTACTA--------TCCAAT---------------------TCTCGCAGCGATCCTGTACAGACTCAAACTAGGGCAATCGGTTACAACGATACCCACT----------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13337:22595019-22595187 -		AAAAGAAATGAGAATATTAATG---------------------------------------------------------------------------------------------------------------GTCGGATTAGATGCCGCTGGTAAAACAACCA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAATTGTTACAACGATACCTACTATTGGTAAGTTTA-----------------------------TGGGCTCCTCTTCATTATTTTACCCTTT-----TTT--TTATT-AATCAATTATT---GT---TCGCTTT
droBip1	scf7180000395637:8561-8723 +		AAAACAAATGCGCATTCTTATGGGTACGTCATTG----------------------------ACATTATTGTAATTA----------------AACTTTTATACATGTTGATTAAAATTTAAC----TACACAGTTGGTTTGGATGCAGCTGGAAAGACAACCA---------T----ACTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTTAAACTTGGAGAAATTGTGACAACTATTCCAACT----------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302695:156632-156819 +		AAAGGAAATGAGAATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGGTAAAACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAATTGTTACAACGATACCTACCATTGGTGAGTGGATGTGAATATGATTGTGGTGCAGCGTTTCTCC------------------C-----TATCTTGAAGCAGAGTCTCATATCTCTTTGTGTTTTTTC-CCCG
droFic1	scf7180000453342:710288-710521 -		CAAAGAAATGCGAATTTTAATG---------------------------------------------------------------------------------------------------------------CTTGGACTGGACGCGGCTGGAAAAACAAGTGAGTAT--AATTAAAGATTTAATAAATT--ATTTTTTGCCCATAA-------------AACCTACTACGATTGCCATAAAATTAAACTAACCAGG-ACTTTTGTACATAAAGCCAATCAACTT--------AATACCTGA----------------------------------TCTTTTGA-C--TTCTCACAGCGATCCTGTACAAACTGAAACTCGGGCAGTCAGTTACAACGATACCCACT----------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491214:4074551-4074677 +		CAAAGAAATGCGAATTCTCATG---------------------------------------------------------------------------------------------------------------CTCGGACTGGACGCGGCTGGAAAAACAAGTGAGCAT-CAATGAAGGGTTTTCGAAATTCGATTT-------------------------------------------------------------------------------------------------------------------TTG--------ACCTAT---------------------TTTTGT----------------------------------------AGGATATTTACTCTAG------------------------------------------------------------------------------------------------AAACAA-CTTCG
droRho1	scf7180000772369:16829-17039 -		AAAACAAATGCGTATTCTAATGGGTACGTTGTTCGATAAGTTACTAATGGCTATATACAAAAATGGTCTTGTAAATATTTGCTTATAAATTATAACTCATGTATATGTTCTCCAACATATATTTTTATACACAGTTGGATTGGATGCTGCCGGAAAAACAACTA---------T----ATTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAGTTGGGGGAAATAGTAACCACTATCCCAACA----------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302377:343922-344084 +		AAAGGAAATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGGTAAAACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAATTGTTACAACGATACCTACTATTGGTGAGTGTT-----------------------------ATAGAGCGCC-----CACAGCACCCTCT------TT--ATATTAACTCTTTCCTG---AT----CTTTCC
droTak1	scf7180000415879:82821-82924 +		AAAGGAAATGAGGATACTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGGTAAAACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAATTGTTACAACGATACCTACCATTG------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409490:1022286-1022447 -		AA-GGAGGCACGCATCCTGCTG---------------------------------------------------------------------------------------------------------------CTGGGCCTGGACAATGCGGGCAAGACCACAA---------T----ACTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCAACTGGCATCGGAGGAT---ATAACCACGGTGCGTATTAAAGCGGCGAACT--------------------------TCTTC------------------CGTTTTCCCCATAAAATACGGAGTGAAATCCCGCAG-GTAACGC-CCACG
dm3	chr3L:22862879-22863045 -		AAAGGAAATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGGTAAAACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAATTGTTACAACGATACCTACCATTGGTAAGTATC--------------------------TTATTAGCACCTT-----TAATGTATCTTGT------CC--AAATCTAATATCTAATG---GT---TGTCCCC
droSim2	3l:22349184-22349347 -		AAAGGAAATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGGTAAAACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAATTGTTACAACGATACCTACCATTGGTAAGTATA----------------------------ATTAGCACCTT-----TAATGTATCTTTT------CC--ACATCTAATATCTTATG---GT---TC-CCCC
droSec2	scaffold_11:2763661-2763824 -		AAAGGAAATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGGTAAAACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAATTGTTACAACGATACCTACCATTGGTAAGTATT----------------------------ATTAGCACCTT-----TAATGTATCTTTT------CC--ATGTCTAATATCTTATG---GT---TC-CCCC
droYak3	3L:23337293-23337456 -		AAAGGAAATGAGAATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGGTAAAACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAATTGTTACAACGATACCTACCATTGGTAAGTATC-----------------------------TTGGCCCCTT-----TACTGCCTCTTTC------CC--AAATCTAACATCCTATG---GT---TCTCCCT
droEre2	scaffold_4784:22504500-22504663 -		AAAGGAAATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGGTAAAACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAATTGTTACAACGATACCTACCATTGGTAAGTATC-----------------------------TCAGTCCCTC-----TAATGTCTCTTTC------CC--ATATCAAACATCTTATG---GT---TCTCCCC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CAAAGAAATGCGAATTCTTATG---------------------------------------------------------------------------------------------------------------CTCGGCTTGGACGCTGCTGGCAAAACAAGTGAGTGGTCAAT----GCTTATCTAAAT-CG-TTA-------------------------------------------------------------------------------------------------------------------TTT--------ATATAATTTTTATGTATATTGAAACGTTTTCGCAGCGATCCTCTATAAACTGAAACTGGGTCAATCGGTTACAACGATACCCACG----------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................CTGGGTCAATCGGTTACAACG.........................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCTTATG---------------------------------------------------------------------------------------------------------------CTCGGCTTGGA........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AGAAATGCGAATTCTTATG---------------------------------------------------------------------------------------------------------------CTCGGCTT...........................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCTTATG---------------------------------------------------------------------------------------------------------------CTCGGCTTGGAC.......................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCTTATG---------------------------------------------------------------------------------------------------------------CTCGGCTTGGACGCTGCTGGC..............................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................TGAAACTGGGTCAATCGGTTACAACG.........................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..AAGAAATGCGAATTCTTATG---------------------------------------------------------------------------------------------------------------CT.................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................GGGTCAATCGGTTACAAC..........................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CTTATG---------------------------------------------------------------------------------------------------------------CTCGGCTTGGAC.......................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AGAAATGCGAATTCTTATG---------------------------------------------------------------------------------------------------------------CTT................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AA-GTAAACTTGAATTTAATTC------------------------------------------ATT------------------------------------------------------------------ATTG---TAAATAT---------------------------------------------------TTCCCCTTAG-TAAATAAGAATTAAATTGTTATGAT-----------------TGTCACTTGATCA------------------ACTTCATTCAATGATATATGA----------------------------------TATATTTA-ATACTTTTGCAGCGATTCTCTATAAACTGAAACTAGGTCAATCAGTAACAACGATACCAACG----------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

CAAAGAAATGCGAATTCTTATG---------------------------------------------------------------------------------------------------------------CTCGGCTTGGACGCTGCTGGCAAAACAAGTGAGT-------------------------------------------------------------------------------------------------------------------TCAAAATTGAAATATTTGATGAATGGCTTATTAAATTAAAACTCAAT---------C---------TCCTTTACAGCGATCCTCTATAAACTGAAACTGGGGCAATCAGTGACAACGATACCCACG----------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....................................................................................................................................................................................................................................................................................................................................................................................CTGAAACTGGGGCAATCA..................................................................................................................................	18	1	1.00	1	1	0
.......................................................................................................................................CGGCTTGGACGCTGCTGGC..............................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0

droWil2

CAAGGAAATGCGAATCCTTATG---------------------------------------------------------------------------------------------------------------CTCGGTTTAGATGCAGCCGGCAAGACAAGTGAGTAT--AC-------------------------TCCCCCTTTTTTA-----------------------------------------------------------------------------AAGAAAAAAATGATCATTAACTTTATGTACTTATATTTTGT---------------------TCCCTCAGCGATTCTTTATAAACTTAAACTAGGGCAATCAGTGACAACGATACCCACA----------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................................................................................................................................................................................................................................................................................TAAACTAGGGCAATCAGTGACAACGA........................................................................................................................	26	1	2.00	2	0	0	0	2	0
.........................................................................................................................................................................................................................................................................................................................................................................................ACTAGGGCAATCAGTGACAACGATAC.....................................................................................................................	26	1	1.00	1	0	0	1	0	0
.......ATGCGAATCCTTATG---------------------------------------------------------------------------------------------------------------CTCGGT.............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................ATTCTTTATAAACTTAAACTAGGGC.......................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................TATAAACTTAAACTAGGGCAATCAGT................................................................................................................................	26	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................ATAAACTTAAACTAGGGCAATCAGT................................................................................................................................	25	1	1.00	1	0	1	0	0	0
...........................................................................................................................................TTAGATGCAGCCGGCAAGA..........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................AGGGCAATCAGTGACAACG.........................................................................................................................	19	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................TTAAACTAGGGCAATCAGT................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.......ATGCGAATCCTTATG---------------------------------------------------------------------------------------------------------------CTCGGTT............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................CTAGGGCAATCAGTGACAACGATAC.....................................................................................................................	25	1	1.00	1	0	0	0	1	0
.............ATCCTTATG---------------------------------------------------------------------------------------------------------------CTCGGTTTAGA........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................TAAACTAGGGCAATCAGTGAC.............................................................................................................................	21	1	1.00	1	0	0	0	1	0
...........................................................................................................................................TTAGATGCAGCCGGCAAGACAACGA....................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...............CCTTATG---------------------------------------------------------------------------------------------------------------CTCGGTTTAGA........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TAAACTAGGGCAATCAGT................................................................................................................................	18	1	1.00	1	0	0	0	1	0

dp5

CAAAGAGATGCGAATTCTCATG---------------------------------------------------------------------------------------------------------------CTCGGGCTGGACGCGGCGGGCAAAACAAGTAAGCAG--G------------------------------------------------------------------------------CCGCTAGCCGGCGA------------------TCGACATTACAAGGTGCAAGAACTAATTTACTC--------CCCAAT---------------------TCTCGCAGCGATCCTGTACAGACTCAAACTAGGGCAATCGGTTACAACGATACCCACT----------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................TCCTGTACAGACTCAAACTAGGG........................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................GATCCTGTACAGACTCAAACTAGG.........................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................TCCTGTACAGACTCAAACTAGGGCAATCG..................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................GTACAGACTCAAACTAGGGC.......................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................CGGGCTGGACGCGGCG.................................................................................................................................................................................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	1

droPer2

CAAAGAGATGCGAATTCTCATG---------------------------------------------------------------------------------------------------------------CTCGGGCTGGACGCGGCGGGCAAAACAAGTAAGCAG--G------------------------------------------------------------------------------CCGCTAGCCGGCGA------------------TCGACATTACAAGGTGCAAGAACTAATTTACTA--------TCCAAT---------------------TCTCGCAGCGATCCTGTACAGACTCAAACTAGGGCAATCGGTTACAACGATACCCACT----------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............ATTCTCATG---------------------------------------------------------------------------------------------------------------CTCGGGCTGGACGCGGCG.................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................GTACAGACTCAAACTAGGGC.......................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................GATCCTGTACAGACTCAAACTAGGGC.......................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0

droAna3

AAAAGAAATGAGAATATTAATG---------------------------------------------------------------------------------------------------------------GTCGGATTAGATGCCGCTGGTAAAACAACCA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAATTGTTACAACGATACCTACTATTGGTAAGTTTA-----------------------------TGGGCTCCTCTTCATTATTTTACCCTTT-----TTT--TTATT-AATCAATTATT---GT---TCGCTTT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............ATTAATG---------------------------------------------------------------------------------------------------------------GTCGGATTAGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	25	1	5.00	5	0	0	0	0	5	0
......................................................................................................................................................................................................................................................................................................................................................................................................GTTACAACGATACCTACTATTG............................................................................................................	22	1	2.00	2	0	0	2	0	0	0
...............ATTAATG---------------------------------------------------------------------------------------------------------------GTCGGATTAGATGCC....................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	1	0	0	0	1	0
..............TATTAATG---------------------------------------------------------------------------------------------------------------GTCGGATTAGATGCC....................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	0	0	1	0
...................................................................................................................................................................A---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGC........................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................AAACTCAAATTAGGCGAAATTGTTACAA...........................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAATT..................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................AATTAGGCGAAATTGTTACAACGATAC.....................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................ATTAGATGCCGCTGGTAAAACAAC......................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................AAAACAACCA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACA......................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................AGATGCCGCTGGTAAAACAACCA---------...........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.AAAGAAATGAGAATATTAATG---------------------------------------------------------------------------------------------------------------GTCGG..............................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................GATTAGATGCCGCTGGTAAA...........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..................AATG---------------------------------------------------------------------------------------------------------------GTCGGATTAGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................GATTAGATGCCGCTGGTAAAACAAC......................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.............ATATTAATG---------------------------------------------------------------------------------------------------------------GTCGGATTAGAT.......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...............ATTAATG---------------------------------------------------------------------------------------------------------------GTCGGATTAGATGA.....................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.......ATGAGAATATTAATG---------------------------------------------------------------------------------------------------------------GTC................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TTACAACGATACCTACTAC..............................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.........GAGAATATTAATG---------------------------------------------------------------------------------------------------------------GTCGGA.............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................TTAGATGCCGCTGGTAAAACAACCA---------...........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
....GAAATGAGAATATTAATG---------------------------------------------------------------------------------------------------------------GTCG...............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................AAACTCAAATTAGGCGAAATTGTTAC.............................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
....GAAATGAGAATATTAATG---------------------------------------------------------------------------------------------------------------GTCGGA.............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................ACTCAAATTAGGCGAAATTGTTACAAC..........................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................TAGATGCCGCTGGTAAAAC.........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................ACAAACTCAAATTAGGCGA......................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................GGATTAGATGCCGCTGGTAAAAC.........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0

droBip1

AAAACAAATGCGCATTCTTATGGGTACGTCATTG----------------------------ACATTATTGTAATTA----------------AACTTTTATACATGTTGATTAAAATTTAAC----TACACAGTTGGTTTGGATGCAGCTGGAAAGACAACCA---------T----ACTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTTAAACTTGGAGAAATTGTGACAACTATTCCAACT----------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAAGGAAATGAGAATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGGTAAAACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAATTGTTACAACGATACCTACCATTGGTGAGTGGATGTGAATATGATTGTGGTGCAGCGTTTCTCC------------------C-----TATCTTGAAGCAGAGTCTCATATCTCTTTGTGTTTTTTC-CCCG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAAAGAAATGCGAATTTTAATG---------------------------------------------------------------------------------------------------------------CTTGGACTGGACGCGGCTGGAAAAACAAGTGAGTAT--AATTAAAGATTTAATAAATT--ATTTTTTGCCCATAA-------------AACCTACTACGATTGCCATAAAATTAAACTAACCAGG-ACTTTTGTACATAAAGCCAATCAACTT--------AATACCTGA----------------------------------TCTTTTGA-C--TTCTCACAGCGATCCTGTACAAACTGAAACTCGGGCAGTCAGTTACAACGATACCCACT----------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAAAGAAATGCGAATTCTCATG---------------------------------------------------------------------------------------------------------------CTCGGACTGGACGCGGCTGGAAAAACAAGTGAGCAT-CAATGAAGGGTTTTCGAAATTCGATTT-------------------------------------------------------------------------------------------------------------------TTG--------ACCTAT---------------------TTTTGT----------------------------------------AGGATATTTACTCTAG------------------------------------------------------------------------------------------------AAACAA-CTTCG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAAACAAATGCGTATTCTAATGGGTACGTTGTTCGATAAGTTACTAATGGCTATATACAAAAATGGTCTTGTAAATATTTGCTTATAAATTATAACTCATGTATATGTTCTCCAACATATATTTTTATACACAGTTGGATTGGATGCTGCCGGAAAAACAACTA---------T----ATTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAGTTGGGGGAAATAGTAACCACTATCCCAACA----------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAAGGAAATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGGTAAAACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAATTGTTACAACGATACCTACTATTGGTGAGTGTT-----------------------------ATAGAGCGCC-----CACAGCACCCTCT------TT--ATATTAACTCTTTCCTG---AT----CTTTCC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAAGGAAATGAGGATACTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGGTAAAACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAATTGTTACAACGATACCTACCATTG------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AA-GGAGGCACGCATCCTGCTG---------------------------------------------------------------------------------------------------------------CTGGGCCTGGACAATGCGGGCAAGACCACAA---------T----ACTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCAACTGGCATCGGAGGAT---ATAACCACGGTGCGTATTAAAGCGGCGAACT--------------------------TCTTC------------------CGTTTTCCCCATAAAATACGGAGTGAAATCCCGCAG-GTAACGC-CCACG	Size	Hit Count	Total Norm	Total
No Reads

dm3

AAAGGAAATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGGTAAAACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAATTGTTACAACGATACCTACCATTGGTAAGTATC--------------------------TTATTAGCACCTT-----TAATGTATCTTGT------CC--AAATCTAATATCTAATG---GT---TGTCCCC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............TATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGC..................................................................................................................................................................................................................................................................................................................................................................................	25	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	0	1	0	0	0
.............ATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	27	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................GGTTTGGATGCCGCTGGT..............................................................................................................................................................................................................................................................................................................................................................................	18	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	25	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	1	0	0	0	0	0	0	0
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....................................................................................................................................................................................................................................................................................................................................................................................................TTGTTACAACGATACCTACCATTGGT..........................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................CTCAAATTAGGCGAAATTGTTACAACGA........................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCATC.................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AAAGGAAATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGGTAAAACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAATTGTTACAACGATACCTACCATTGGTAAGTATA----------------------------ATTAGCACCTT-----TAATGTATCTTTT------CC--ACATCTAATATCTTATG---GT---TC-CCCC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	25	1	12.00	12	0	3	8	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	27	1	10.00	10	0	2	6	1	0	0	0	0	0	0	0	1	0	0	0	0	0
............GATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	28	1	5.00	5	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........TGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGA........................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................AATTAGGCGAAATTGTTACAACG.........................................................................................................................	23	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTG................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......ATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGG.........................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAA....................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................A---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGA......................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................TGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCC....................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................AAAACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACA......................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCC.................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................AA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATT............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............TATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GAAATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTG..........................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......ATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGAT.......................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................A---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAA.....................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................AACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAAT.............................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................TGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCG...................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......ATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCG...............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......ATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGC.....................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................AA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCA................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................A---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGC........................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......ATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGA........................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAATT..................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGC.....................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......ATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGG..............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................ATTAGGCGAAATTGTTACAACGA........................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................AAAACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAA....................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......AATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGC.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......AATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGT.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAAT...................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................AAAACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTC.................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......AATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTT............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAA.....................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............TATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGC.....................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTT...........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............ATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCG.................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGTTACAACGATACCTACCATT.............................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AAAGGAAATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGGTAAAACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAATTGTTACAACGATACCTACCATTGGTAAGTATT----------------------------ATTAGCACCTT-----TAATGTATCTTTT------CC--ATGTCTAATATCTTATG---GT---TC-CCCC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	25	1	20.00	20	0	5	15	0
.............ATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	27	1	19.00	19	1	7	10	1
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTG................................................................................................................................................................................................................................................................................................................................................................................	26	1	10.00	10	0	2	8	0
.......ATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCG...............................................................................................................................................................................................................................................................................................................................................................................................	19	1	6.00	6	2	1	3	0
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGAT.......................................................................................................................................................................................................................................................................................................................................................................................	19	1	6.00	6	0	0	6	0
................TTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	1	3	0
.............ATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTG................................................................................................................................................................................................................................................................................................................................................................................	28	1	4.00	4	0	3	1	0
..............TATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	1	2	0
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGA........................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0
.................TGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	1	1
.......ATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGG.........................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0
.................TGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGC.....................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGGT..............................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	2	0	0
..................GATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGGT..............................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0
............GATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	2	0
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGC.....................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	1	0
.................................................................................................................................................................................................................................................................................................................................................................................AAACTCAAATTAGGCGAAA....................................................................................................................................	19	1	1.00	1	0	0	1	0
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCG...................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1
.......ATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATG......................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0
.AAGGAAATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
....................................................................................................................................................................................TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGC........................................................................................................................................	20	1	1.00	1	1	0	0	0
...............................................................................................................................................ATGCCGCTGGTAAAACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T.........................................................................................................................................................	27	1	1.00	1	0	0	1	0
........TGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCG...............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................ACAAACTCAAATTAGGCGAAATTGT................................................................................................................................	25	1	1.00	1	0	1	0	0
.............ATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGAT.......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................TCAAATTAGGCGAAATTGTTACAA...........................................................................................................................	24	1	1.00	1	0	0	0	1
.................TGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCC....................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.............ATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGC..................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................ATTAGGCGAAATTGTTACAAC..........................................................................................................................	21	1	1.00	1	0	0	1	0
..................GATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTG................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
...........................................................................................................................................TTGGATGCCGCTGGTAAA...........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
...................................................................................................................................................CGCTGGTAAAACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T.........................................................................................................................................................	23	1	1.00	1	0	0	1	0
.................TGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGC..................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
......AATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGG.........................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
................TTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCC....................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
..................GATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
..........AGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGA........................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
.....................................................................................................................................GTCGGTTTGGATGCCGCTGGTAAA...........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
.............ATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCG...................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.............ATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGG.........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.AAGGAAATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------TC.................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
.......ATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTT............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................AAACTCAAATTAGGCGAA.....................................................................................................................................	18	1	1.00	1	0	0	1	0
.................TGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATG......................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGC..................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCC....................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
.AAGGAAATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GT.................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................TGTTACAACGATACCTACCATT.............................................................................................................	22	1	1.00	1	1	0	0	0
.............ATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCC....................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
..............TATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTG................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
..................................................................................................................................................................AA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGC........................................................................................................................................	25	1	1.00	1	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................TCAAATTAGGCGAAATTGT................................................................................................................................	19	1	1.00	1	0	0	0	1

droYak3

AAAGGAAATGAGAATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGGTAAAACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAATTGTTACAACGATACCTACCATTGGTAAGTATC-----------------------------TTGGCCCCTT-----TACTGCCTCTTTC------CC--AAATCTAACATCCTATG---GT---TCTCCCT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................GATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	22	1	9.00	9	0	1	0	0	0	0	8	0	0	0	0
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	25	1	7.00	7	0	1	0	0	0	0	6	0	0	0	0
.............ATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	27	1	5.00	5	0	0	0	0	0	0	5	0	0	0	0
..............TATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGG...............................................................................................................................................................................................................................................................................................................................................................................	28	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3
............AATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	28	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
.................TGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................AATTAGGCGAAATTGTTACA............................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTG................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
............AATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCC....................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGC..................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................TCAAATTAGGCGAAATTGTTACAACG.........................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............ATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGAT.......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................GATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCC....................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................TAGGCGAAATTGTTACAACGATAC.....................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................ATTAGGCGAAATTGTTACAA...........................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................AAACTCAAATTAGGCGAAATTGT................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................AAATTAGGCGAAATTGTTA..............................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................GGCGAAATTGTTACAACGATACCTACC................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............TATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGA........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGGT..............................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................ATTAGGCGAAATTGTTACAAC..........................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................GTTACAACGATACCTACCATTGGTTT........................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
................TTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATG......................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TACAACGATACCTACCATTG............................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......ATGAGAATATTGATG---------------------------------------------------------------------------------------------------------------GTC................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGC.....................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
......AATGAGAATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGAT.......................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...........GAATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGAT.......................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................ATTAGGCGAAATTGTTACAACGA........................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................GTTACAACGATACCTACCATT.............................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........GAGAATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGC.....................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............TATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................TGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCC....................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................CAAATTAGGCGAAATTGTTACAACGA........................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCG...................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................TTGTTACAACGATACCTACCATT.............................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......AATGAGAATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGT.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTACAACGATACCTACC................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCC....................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................CTCAAATTAGGCGAAATTGT................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............AATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTG................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............ATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGG.........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............ATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTG................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............ATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGC.....................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................AAATTAGGCGAAATTGTTACAAC..........................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...GGAAATGAGAATATTGATG---------------------------------------------------------------------------------------------------------------GT.................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGC........................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........GAATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCG...................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
AAAGGAAATGAGAATATTGATG---------------------------------------------------------------------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......AATGAGAATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTG..........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................GATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGGT..............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................TGTTACAACGATACCTACCATT.............................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................AAACTCAAATTAGGCGAAAT...................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

AAAGGAAATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGGTAAAACCACAA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAAATTGTTACAACGATACCTACCATTGGTAAGTATC-----------------------------TCAGTCCCTC-----TAATGTCTCTTTC------CC--ATATCAAACATCTTATG---GT---TCTCCCC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............ATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	27	1	5.00	5	0	0	0	0	3	2	0
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	25	1	5.00	5	0	0	0	2	2	1	0
..................GATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	2	2	0
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCC....................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	2	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................ATTAGGCGAAATTGTTACAACGA........................................................................................................................	23	1	2.00	2	0	0	1	0	1	0	0
.......ATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGT.............................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	1	1	0	0
....GAAATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GT.................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................TAGGCGAAATTGTTACAACGATACC....................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.......ATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTT...........................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
..................GATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGC.....................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................AAACTCAAATTAGGCGAAATTGT................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................GGTTTGGATGCCGCTGGTAAAACC........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................AAATTAGGCGAAATTGTTACAACGAT.......................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................AAACTCAAATTAGGCGAAAT...................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTGGT..............................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................TTTGGATGCCGCTGGTAAAA..........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.............ATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGC.....................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0
................TTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGC..................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................CTCAAATTAGGCGAAATTGTTACAAC..........................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
.......ATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTT............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................GTTTGGATGCCGCTGGTAAAACCACA.....................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTACAACGATACCTACC................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTG................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................TTGTTACAACGATACCTACCATTGGTT.........................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0
.............ATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCTG................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................GGTTTGGATGCCGCTGGT..............................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
..............TATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
.......ATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGAT.......................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................ACAAACTCAAATTAGGCGAAATTGTTAC.............................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
..AGGAAATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
...............ATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGAT.......................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
....GAAATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCG...............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
...........GGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGG.........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
................TTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGC.....................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
......AATGAGGATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTT...........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TTAGGCGAAATTGTTACAACGAT.......................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................AGGCGAAATTGTTACAACGATAC.....................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................CGAAATTGTTACAACGATACCTACCA...............................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................CTCAAATTAGGCGAAATTGTTACAACGA........................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................AA---------T----TCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACTCAAATTAGGCGAA.....................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
............GATATTGATG---------------------------------------------------------------------------------------------------------------GTCGGTTTGGATGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0

dvi_791

scaffold_10324:827044-827111 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads