ID:

dvi_7858

 Coordinate:

scaffold_12875:19028836-19028986 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.5 -13.0 -12.8 -12.6

Flybase annnotation

exon [dvir_GLEANR_5433:10]; CDS [Dvir\GJ19968-cds]; intron [Dvir\GJ19968-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGGTGGTGGGGCTAGGTTCTACAATCAACAAAGCTTGGCTGCGCGTTCAGGTTCCATTGCTGATGAGCTGCTGATCGAGCCCATGACGCCCTATACAAAGGTGCCCATGGTGGTGGTGGTGCCCAACACAGATCAAATCTATGATGATACCAAATTATGAATCGCCACCAAAAAAGACGACCATTTCGACTATCTTTATAAATGTACACTATATACTAACAAACATATCTGTATTCAAAATGAGCTTCCTA
***********************************************************(((..................(((((..(((((......))).)).))))))))****************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 M027
male body		 SRR060683
160_testes_total
 SRR060689
160x9_testes_total
 SRR060655
9x160_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060659
Argentina_testes_total
 SRR060680
 9xArg_testes_total
 SRR060681
Argx9_testes_total
 SRR060664
9_males_carcasses_total
 M028
head
 SRR060656
9x160_ovaries_total
 SRR060671
9x160_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 V053
head
 M061
embryo
 SRR060663
160_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR1106728
larvae
 SRR060667
160_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 V047
embryo
 SRR060657
140_testes_total
 SRR060685
9xArg_0-2h_embryos_total
...........................................................CTGATGAGCTGCTGATCGAGC........................................................................................................................................................................... 21 0 1 6.00 6 2 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CTGATCGAGCCCATGACGCCC................................................................................................................................................................ 21 0 1 4.00 4 0 1 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CAAGGGTGCCCATGGTGGTGG....................................................................................................................................... 21 1 1 4.00 4 1 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TTGGCTGCGCGTTCAGGTTCC.................................................................................................................................................................................................... 21 0 1 3.00 3 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................AAAGCTTGGCTGCGCGTTCAG......................................................................................................................................................................................................... 21 0 1 3.00 3 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................GCTGATGAGCTGCTGATCGAG............................................................................................................................................................................ 21 0 1 3.00 3 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGCTGATCGAGCCCATGACGC.................................................................................................................................................................. 21 0 1 3.00 3 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTTCCATTGCTGATGAGCTGC.................................................................................................................................................................................... 21 0 1 3.00 3 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................TTCTACAATCAACAAAGCTTG...................................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CTACAATCAACAAAGCTTGG..................................................................................................................................................................................................................... 20 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TGATGAGCTGCTGATCGAGCC.......................................................................................................................................................................... 21 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TTGGCTGCGCGTTCGGGTTCC.................................................................................................................................................................................................... 21 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................ATTGCTGATGAGCTGCTGATT............................................................................................................................................................................... 21 1 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................CAATCAACAAAGCTTGGCTGC................................................................................................................................................................................................................. 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TTCCATTGCTGATGAGCTGCT................................................................................................................................................................................... 21 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TACAAAGGTGCCCATGGTGG.......................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................ACAAAGCTTGGCTGCGCGTTC........................................................................................................................................................................................................... 21 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................GATGAGCTGCTGATCGAGCCC......................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................CTGATGAGCTGCTGATCG.............................................................................................................................................................................. 18 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TGAGCTGCTGATCGAGCCCAT....................................................................................................................................................................... 21 0 1 2.00 2 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TGATGAGCTGCTGATCGAG............................................................................................................................................................................ 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................TTCTACAATCAACAAAGCTTGG..................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TCAGGTTCCATTGCTGATGAGCTGCT................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................TTCAGGTTCCATTGCTGATGA......................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TCCATTGCTGATGAGCTGC.................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GTATTCAAAATGAGCTTCCTA 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CTGCTGATCGGGCCCATGACG................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................GATGAGCTGCTGATCGGGCCC......................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................GATGGGCTGCTGATCGAGCC.......................................................................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TTCCATTGCTGATGAGCTGCTT.................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TATAAATGTACACTATATACT.................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................GCGTTCAGGTTCCATTGCTGA............................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATACAAGGGTGCCCATGGTGG.......................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................ATGAGCTGCTGATCGAGC........................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TGAGCTGCTGATCGAGCCCATG...................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................ACACAGATCAAATCTATGATG......................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................ACGACCATTTCGACTATCTT....................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CTGCGCGTTCGGGTTCCATTG................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TGATACCAAATTATGAGTCGC...................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................CTGATGAGCTGCTGATCAAG............................................................................................................................................................................ 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TGCTGATGAGCTGCTGATCGA............................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CACAGATCAAATCTATGATGA........................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTTCCATTGCTGATGAGCTG..................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................GATGAGCTGCTGATCGAGT........................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TGTCTGTATTCAGAATGAGC...... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................ATACCAAATTATGAATCGCCA.................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATACAAATGTGCCCATGGTGG.......................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GGTTCCATTGCTGATGAGCT...................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................AACAGAGCTTGGCTGCGCGTT............................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GCCACCAAAAAAGACGACCAT................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CTACAATCAACAAAGCTTGGC.................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................AAAGCTTGGCTGCGCGTTCAT......................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TTCCATTGCTGATGAGCTGCTG.................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TATCTGTATTCAAAATGAGCTT.... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TGGGTTCTACAATCAACAAAGCT........................................................................................................................................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................ATGAGCTGCTGATCGAGCCC......................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TGTATTCAAGATGAGCTTCCT. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AAGCTTGGCTGCGCGTTCAGG........................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AGGCTTGGCTGCGCGTTCAGG........................................................................................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TGATGAGCTGCTGATCGAGC........................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................GCCCATGACGCCCTATACAAAGGT..................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................ATTGCTGATGAGCTGCTGATC............................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TATACAAGGGTGCCCATGGTG........................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................AGCTGCTGATCGAGCCCATG...................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................GGGTTCCATTGCTGATGAGCT...................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................AGGTTCCATTGCTGATGAGCT...................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AAAGACGACCATTTCGACTAT.......................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GGGCTGGGTTCTGCAATCAACA............................................................................................................................................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TACCAAATTATGAATCGCCAC................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TGTATTCAAAATGAGCTTCCTT 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GGTGGGGCTAGGTTCTACAAT.................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CTGCGCGTTCGGGTTCCATTGC............................................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CAAAGGTGCCCATGGTGGTGG....................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATACAAAGGTGCCCATGGC............................................................................................................................................ 19 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................GTGCCCATGGTGGTGGTGGTGCCCAAC............................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AGGGTGCCCATGGTGGTGGTG..................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GTGGTGGGGCTAGGTTCTACAATC................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................TACAATCAACAAGGCTTGGC.................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TGCGCGTTCAGGTTCCATTGC............................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................CCGTTGCTGATGAGCTGCTG.................................................................................................................................................................................. 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................ATGATGATACCAAATTATGAATCGCC..................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................CTGATGAGCCGCCGATCGAGC........................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CTGATCGAGCCCATGACGC.................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TACAATCAACAAAGCTTGGCT................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TGTCTGTATTCAAAATGAGCT..... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TCTACAATCAACAAGGCTTGG..................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................AATTATGAATCGCCACCAAAA.............................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................TGGCTGAGCGGTCAGGTTCC.................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................TTGCTGATGAGCTGCTGATCG.............................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TACAATCAACAAAGCTTGGCTG.................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................GCTGATCGAGCCCATGAC.................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................GATCGAGCCCATGACGCCCTAT............................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CTGCTGATCGAGCCCATGACGCCCT............................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................CTGATGAGCTGCTGATCGAGCT.......................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TGCTGATGAGCTGCTGATCGT............................................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TGCTGATGAGCTGCTGATCT.............................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TATCTGTATTCAAAATGAGCT..... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................ATCGCCACCAGGAAAGACGA....................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATACAGGGGTGCCCATGGTGG.......................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................GGGTGCCCATGGTGGTGGTGG.................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GTTCTACAATCAACAAAGTTT....................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TCAGGTTCCATTGCTGATGAG........................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TGATGAGCTGCTGATCGGGCCT......................................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TGCGCATGGGGGTGGTAGTGCC................................................................................................................................ 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GTGCAAGGGTGCCCATGGTGG.......................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................ATTGCTGATGAGCTGCTGTT................................................................................................................................................................................ 20 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TCGCCACCAAAGGAGACGACC..................................................................... 21 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................GGGCTTGGCTGCGCGTTCAG......................................................................................................................................................................................................... 20 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................AGGTGCCCGTGGTGAGGGTGG.................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GTGCGCATGGGGGTGGTAGT................................................................................................................................... 20 3 11 0.18 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GTGGGGAAAGGTTCTACG.................................................................................................................................................................................................................................... 18 3 20 0.15 3 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TACGTATCGCCTCCAAAAAA............................................................................ 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................ACTATCTTCTTAAATGTAC............................................ 19 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................GGTTCCCACGCTGGTGGTG..................................................................................................................................... 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GGTTCCATTGCCGTTGTGCTG..................................................................................................................................................................................... 21 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................TAAAAACTAGGATGATACCA................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................TGGCAGCGCGTTTAGGTTGC.................................................................................................................................................................................................... 20 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................GTCGCCACCAAGAAGGACG........................................................................ 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACCACCACCCCGATCCAAGATGTTAGTTGTTTCGAACCGACGCGCAAGTCCAAGGTAACGACTACTCGACGACTAGCTCGGGTACTGCGGGATATGTTTCCACGGGTACCACCACCACCACGGGTTGTGTCTAGTTTAGATACTACTATGGTTTAATACTTAGCGGTGGTTTTTTCTGCTGGTAAAGCTGATAGAAATATTTACATGTGATATATGATTGTTTGTATAGACATAAGTTTTACTCGAAGGAT
******************************************************************************************************************************************(((..................(((((..(((((......))).)).))))))))*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 M027
male body		 SRR060683
160_testes_total
 SRR060655
9x160_testes_total
 SRR060657
140_testes_total
 SRR060689
160x9_testes_total
 SRR060659
Argentina_testes_total
 M028
head
 V053
head
 SRR060654
160x9_ovaries_total
 SRR060666
160_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060678
9x140_testes_total
 SRR060668
160x9_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060670
9_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060687
9_0-2h_embryos_total
 V047
embryo
.....................................................................................................................CCACGGGTTGTGTCTAGTTTA................................................................................................................. 21 0 1 9.00 9 2 0 6 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................CCGACGCGCAAGTCCAAGGTA.................................................................................................................................................................................................. 21 0 1 7.00 7 0 2 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GGTGGTTTTTTCTGCTGGTAA.................................................................. 21 0 1 7.00 7 5 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CGGGTACTGCGGGATATGTTT........................................................................................................................................................ 21 0 1 6.00 6 4 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................ACCACGGGTTGTGTCTAGTTT.................................................................................................................. 21 0 1 6.00 6 1 1 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CGGGATGTGTTTCCACGGGTA............................................................................................................................................... 21 1 1 5.00 5 2 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGGTGGTTTTTTCTGCTGGTA................................................................... 21 0 1 5.00 5 1 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................CGACGCGCAAGTCCAAGGTAA................................................................................................................................................................................................. 21 0 1 4.00 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GGGTTGTGTCTAGTTTAGATA............................................................................................................. 21 0 1 3.00 3 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................CGGGTTGTGTCTAGTTTAGAT.............................................................................................................. 21 0 1 3.00 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GGTAAAGCTGATAGAAATATT.................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CGGGATATGTTTCCACGGGTA............................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CACGGGTTGTGTCTAGTTTAG................................................................................................................ 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................GAACCGACGCGCAAGTCCAAG..................................................................................................................................................................................................... 21 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................GGGATATGTTTCCACGGGTA............................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................CGGGTTGTGTCTAGTTTAGGT.............................................................................................................. 21 1 1 2.00 2 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............ATCCAAGATGTTAGTTGTTTC.......................................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........CCGATCCAAGATGTTAGTTG.............................................................................................................................................................................................................................. 20 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CCCCGATCCAAGATGTTAGTT............................................................................................................................................................................................................................... 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................GTGGTTTTTTCTGCTGGTAAA................................................................. 21 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TGCTGGTAAAGCTGATAGAAA...................................................... 21 0 1 2.00 2 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TTCGAACCGACGCGCAAGTCC........................................................................................................................................................................................................ 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GCTGGTAAAGCTGGTAGAAAT..................................................... 21 1 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TGGGTTGTGTCTAGTTTAGA............................................................................................................... 20 1 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTAGCGGTGGTTTTTTCTGCT....................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................CCGCGGGTTGTGTCTAGTTTA................................................................................................................. 21 1 1 2.00 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GGGTTGTGTCTAGTTTAGGTA............................................................................................................. 21 1 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................CGGGTACTGCGGGATGTGTTT........................................................................................................................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CGAACCGACGCGCAAGTCCAA...................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GCTGGTAAAGCTGGTAGAAATG.................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................GTCCAAGGTAACGACTACTCG....................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................GCGGGATATGTTTCCACGGGT................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................GTTTAATACTTAGCGGTGGTT................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ACGGGTACCACCACCGCCACG................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CGGGTACTGCGGGGTATGTT......................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TTCGACGACTAGCTCGGGTACT..................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GCTGTGGTTTTTTCTGCTGGT.................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TCTGCTGGTAAAGCTGGTAGA........................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CCCCGGTCCAAGATGTTAGTT............................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................TCGGCGACTAGCTCGGGTACT..................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GGTTGTGTCTAGTTTAGATAC............................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TAGATACTACTATGGTTTAA............................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTCTGCTGGTCAGGCTGGTAG......................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTCGGGTACTGCGGGGTATGTT......................................................................................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TACTTAGCGGTGGTTTTTT............................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TTGTTTCGAACCGACGCGCAA............................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................CGACGACTAGCTCGGGTACTG.................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.CCACCACCCCGATCCAAGGTG..................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................GACCGACGCGCAAGTCCAAGG.................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GTGATATATGATTGTTTGTAT........................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GGTCCAAGGTGTTAGTTGTTT........................................................................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CACGGGTTGTGTCTAGTTTA................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GGATATGTTTCCACGGGTACC............................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TGCTGGTAAAGCTGGTAGAAA...................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CCAAGGTGACGACTACTCGAC..................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GGTACTGCGGGATATGTTTCC...................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................GCTCGGGTACTGCGGGATATG........................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....CACCCCGATCCAAGGTGTTAG................................................................................................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GCGGTGGTTTTTTCTGCTGGT.................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GGTTTTTTCTGCTGGTAAAGCT.............................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TGAACCGACGCGCAAGTCCAAG..................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................GGCGACTAGCTCGGGTACTGC................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GGTAAAGCTGGTAGAAATATT.................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TAATGCTTAGCGGTGGTTT............................................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................GGTTTAATACTTAGCGGTGGT................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................GACGCGCAAGTCCAAGGTAAC................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGGTGGTTTTTTCTGCTGGT.................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CGGGATGTGTTTCCGCGGGTA............................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TAATACTTAGCGGTGGTTTTT............................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGGTAAAGCTGATAGAAATAT................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TGATAGAAATATTTACATGTG.......................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGGTGGTTTTTTCTGCTGGTAA.................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TCCAAGATGTTAGTTTTTTC.......................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TTCGAACCGACGCGCAAGTCCA....................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGGTAAAGCTGATAGAAATGT................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CATAAGTTTTACTCGAAGGGT 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CTGGTAAAGCTGATAGAAATG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CCACCCCGGTCCAAGGTGTTA.................................................................................................................................................................................................................................. 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................TGCGCAAGTCCAAGGTAACGA.............................................................................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........CCCGATCCAAGATGTTAGTT............................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................ACGGGTTGTGTCTAGTTTAGA............................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ATAGAAATATTTACATGTGAT........................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TCTGCTGGTAAAGCTGATAGA........................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTCGGGTACTGCGGGGTATGTTT........................................................................................................................................................ 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GGTGGTTTTTTCTGTTGGTAA.................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GGTTGTGTCTAGTTTAGA............................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................CCGACGCGCAAGTCCAAGGTGA................................................................................................................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCGGGATGTGTTTCCACGGG................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CGGGGTATGTTTCCACGGGTA............................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CCACCCCGATCCAAGATGTTA.................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................CGGCGCGCAAGTCCAAGGTAA................................................................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GGTACTGCGGGATATGTTT........................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................ACGCGCAAGTCCAAGGTAACG............................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GGGTACTGCGGGATATGTTTC....................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GGGTTGTGTCTAGTTTAGG............................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCGGGTACTGCGGGGTATG........................................................................................................................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................GACGCGCAAGTCCAAGGTAA................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TTAGTTGTTTCGAACCGACGC................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GCTGGTGAAGCTGATAGAAAT..................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................GACTACTCGACGACTGGCTC............................................................................................................................................................................ 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................CCGACGCGCAAGTCCGAGGTA.................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GGTTTTTTCTGCTGGTAAAGC............................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AGCTGATAGAAATATTTACA.............................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TTAGATACTACTGTGGTTTGGT.............................................................................................. 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATGTGATATATGATTGTTTGT.......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GGTTGTGTCTAGTTTAGAT.............................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTTTCTGCTGGTAAAGCTGA............................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ACCACCACGGGTTGTGTCTA...................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GGTACTGCGGGATGTGTTT........................................................................................................................................................ 19 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCGGGTACTGCGGGATATGTT......................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................GCGCAAGTCCAAGGTAACGAC............................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TAGCTCGGGTACTGCGGGGTA............................................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GGGTACTGCGGGGTATGTTTC....................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CGGGATATGTTTCCACGGGT................................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GGATATGTTTCCACGGGTA............................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CGGTACTGCGGGGTATGTTTC....................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GCTGGTAAGGCTGATAGAAAT..................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................GGGTACTGCGGGATATGTTT........................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................ATGGTGGTTTTTTCTGCTGGTAAA................................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CACCACGGGTTGTGTCTAGTT................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GCTGGTAAAGCTGATAGAAAT..................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................GTTGTTTCGAACCGACGCGCA............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CGGGGTGTGTTTCCACGGGTA............................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..CACCACCCCGATCCAAGATGTT................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................TGTTTCGAACCGACGCACAAG........................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................CACCACCGCTGGTTGTGTCTA...................................................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GGGTTGTGTCTAGTTTAGA............................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ACCGCCACGGGTTGTGTCTAG..................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.CCACCACCCCGATCCAAGATG..................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................GGGATATGTTTCCACGGGT................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................ACCACGGGTTGTGTCTAGTT................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TAGTCTTAAGTTTTACTCGAGG... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................CGGGTTGTCTCAAGTTTAG................................................................................................................ 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................TTTACCACGGGTTGTGTCTAGT.................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CACCACCCCCAGGGGTTG............................................................................................................................ 18 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................AAGAAGTTAGTTCTTTCGA........................................................................................................................................................................................................................ 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................CTAGCTTGGCTACTGGGGGA............................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CCCCACCACCAGGGGTTGTA.......................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............CAAGAAGCTAGTTCTTTCGA........................................................................................................................................................................................................................ 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................CCGGGTTGTCTCAAGTTTAG................................................................................................................ 20 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ACCATCACCAGGGGTTGTA.......................................................................................................................... 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................TGCCACCGCCGCCACGGGTTG............................................................................................................................ 21 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................CACAAGTCCTAGGTAACAAC............................................................................................................................................................................................. 20 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TTCACCACCACGGGTTGT........................................................................................................................... 18 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ACCACCACCAGGGGAGGTG.......................................................................................................................... 19 3 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TTAACACCTAGCGGCGGTT................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................ACCACCACAGGTTGTAGCT....................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................TTGTATAGACAGAAGCTTTC.......... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:19028786-19029036 - dvi_7858 TGGTGGTGG---GGCTAGGTTCTACAATCAACAAAGCTTGG------CTGCGCGTTCAGGTTCCATTGCTGATGAGCTGCTGATCGAGCCCA-T--GA---------CGCCCTATACAAAGGTGCCCATGGTGGTGGTGGTGCCCAACA---------CAGA---------TCAAATCTATGATGATACCAAATTATGAATCGCCACCAAAAAAGACGACCATTTCGACTATCTTTA-TAAATGTACACTATATA------C-TAACAAACATATCTGTATTC--AAAATGAGCTTCCT------A
droMoj3 scaffold_6496:12712107-12712336 - TGGTGTTGG---TAGTATGTTCTATAATCAGCATGGCTTGGCGCACGGTGCGCGTCCAAGGTCGATTGCCGATGAGCTGCTGATCGAACCCA-TGACG-----------CCCTACACCCAGGTGCCAACGGTGGTGGTGATGCCCAA------CTCA---GA---------TAAGATTTACGATGATACCAAATTATAAAATTCC----------------------------TCTACTATATGTTTACCATATA------C-TAACAAACATATCTGTATTA--CAAAAGAGCTTCCT------A
droGri2 scaffold_15245:5090238-5090474 - TGCTGGTAGTAGTTAT------TATAGTCAACATAG---TT------TAAAGCGTCCAACATCCATTGGTGATGAGCTCCTGATCGAGCCCA-T--GG---------CGGCATTTATGACGTTGCCAACGGTGGTGGTGGTGCCCAA---------CAGTGA---------TATAATCTATGACGATACCAAATTATAAACCGAT------------------------CATCTCTACTAGATGAATACTATATTTATACACTTACCAAACATATCTGTATTAAGAAAATGAGCTTCCTTCACTTA
droWil2 scf2_1100000004513:950053-950210 - TTTCGGTTT---ATCT------------------------C------CTTCGCATCGTAATTCCCTAGGTGATGAATTCATAATCGAACCGA-A--TCTTGGGGCATCGCCATAT---ATAGTGCCCATGGTTGTGGTAGTACCAAATG---GCAATGGTGATGGTCATCATCATCCGTACAATGATACCAAATTATAAA----------------------------------------------------------------------------------------------------------
dp5 3:3665481-3665613 + TCGTGCTG---------------------------------------CGGCACGACAAATCTCGATTAGCAGCGAGCGACTAACCGAACCCA-G--CT-----------C----TCTGCCCCTGCCCCTGGTGGTGGTCATACCCAATGGCTCCTCGGGGGA---------GCAGCACTACGACGACACAAAGCTGTGA-----------------------------------------------------------------------------------------------------------
droPer2 scaffold_2:3855341-3855473 + TCGTGCTG---------------------------------------CGGCACGACAAATCTCGATTAGCAGCGAGCGACTAACCGAACCCA-G--CT-----------C----TCTGCCCCTGCCCCTGGTGGTGGTCATACCCAATGGCTCCTCGGGGGA---------GCAGCTCTACGACGACACAAAGCTGTGA-----------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:4997498-4997640 + TGTTGGTGGCGCCTAT---------------CATCA---CA------CCTCGCGCCAGATCTCGATCAGCAGTGAGCTGCTGAACGAGCCCA-G--CT---------------------CCCTGCCCCTGGTGGTGGTCATACCCAATA---GCTCCGGTGA---------ACAGACTTACGACGATACCCCGCTGTGAGCCG-------------------------------------------------------------------------------------------------------
droBip1 scf7180000395751:807483-807608 + TGGTGGCGA---CTAT---------------CACCG---CA------CGTCGCGCCAGATCTCGATCAGCAGTGAGCTGCTGAGCGAGCCCA-G--CT---------------------CCCTGCCCCTGGTGGTGGTCATACCCAATA---CCTCCGGTGA---------ACAGACCTACGACGACAC---------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302682:23687-23840 - CGGCAGTGG---TTAT------CATCATAATCATCG---GG------CATCGCGCCAGATATCAATAAGTAGCGAGCTGCTGAGCGAGACAGCTAGCA-----------GC----CTGCCCCTGCCCCTGGTGGTGGTCATACCCAATA---TCTCCGGCGA---------ACAGAGCTACGATGACACCAAGCTGTGA-----------------------------------------------------------------------------------------------------------
droFic1 scf7180000453811:73259-73378 - C----------------------------------G---GG------CGTCGCGCCAGATCTCGATAAGCAGCGAGCTGCTGAACGAGTCCA-G--CT---------------------CCCTGCCCATGGTGGTGGTCATTCCCAATG---CCTCCGGCGA---------ACAGGCCTACGACGACACCAAGCTGTGA-----------------------------------------------------------------------------------------------------------
droEle1 scf7180000488036:718-859 - CGGTGGCGG---TTAT---------------CATCG---GG------CATCGCGTCAGGTCTCGATTAGCAGCGAGCTGATCAACGACTCCA-G--TT---------------------GCCTGCCCATGGTGGTGGTCATTCCCAATG---CCTCTGGCGA---------ACAGGCCTACGACGACACCAAGCTATGAGAGGCC-----------------------------------------------------------------------------------------------------
droRho1 scf7180000780265:174376-174515 - TGGTGG------TTAT---------------CATCG---GG------CATCACGCCAAATCTCGATTAGCAGCGAGCTGCTGAACGAGCCCA-G--TT---------------------CCCTGCCCATGGTGGTGGTCATTCCCAATG---CCTCTGGTGA---------ACAGGCCTACGACGACACCAAGCTGTGAAAGGCCA----------------------------------------------------------------------------------------------------
droBia1 scf7180000302143:1211335-1211470 - TGGTGGTGG---TTAT---------------CATCG---GG------CATCGCGCCAGATCTCGGTGAGCAGCGAGCTGCTGCACGAGTCCA-G--CT---------------------CCCTGCCCTTGGTGGTGGTCATACCCAATG---CCTCCGGCGA---------ACAGGCCTACGACGACACCAAGCTGTGA-----------------------------------------------------------------------------------------------------------
droTak1 scf7180000415722:84849-84992 + TGGTGG------TTAT---------------CATCG---GG------CCTCGCGCCAAATCTCGATTAGCAGCGAGCTGCTGCACGAGTCCA-G--TT---------------------CGCTGCCCATGGTGGTGGTCATTCCCAATG---CCTCCGGCGA---------ACAGACCTACGACGACACCAAGCTGTGAGAGGCCCTCA------------------------------------------------------------------------------------------------A
droEug1 scf7180000409474:746411-746552 - TGGTGGTGG---TTAT---------------CATCG---GG------CATCACGCCAGATCTCGATAAGCAGCGAGTTGCTGCACGAGTCCA-G--TT---------------------CCCTGCCAATGGTGGTGGTCATTCCCAATG---CCTCCGGCGA---------ACAGGCCTATGACGACACCAAGCTGTGAGAGGCC-----------------------------------------------------------------------------------------------------
dm3 chr2R:17196373-17196502 + TGG---------TTAT---------------CATCG---GG------CATCGCGCCAGATCTCGATAAGCAGCGAGCTGCTGCACGAGTCCA-G--TT---------------------CCTTGCCCATGGTGGTGGTCATTCCCAATG---CCTCGGGCGA---------ACAGGCCTACGACGACACCAAGCTCTGA-----------------------------------------------------------------------------------------------------------
droSim2 2r:17750708-17750842 + TGG---------TTAT---------------CATCG---GG------CATCGCGCCAGATCTCGATAAGCAGCGAGCTGCTGCACGAGTCCA-G--TT---------------------CCTTGCCCATGGTGGTGGTCATTCCCAATG---CCTCGGGCGA---------GCAGGCCTACGATGACACCAAGCTCTGAGTGGC------------------------------------------------------------------------------------------------------
droSec2 scaffold_9:526155-526284 + TGG---------TTAT---------------CATCG---GG------CATCGCGCCAGATCTCGATAAGCAGCGAGCTGCTGCACGAGTCCA-G--TT---------------------CCTTGCCCATGGTGGTGGTCATTCCCAATG---CCTCGGGCGA---------ACAGGCCTACGACGACACTAAGCTCTGA-----------------------------------------------------------------------------------------------------------
droYak3 2R:11991868-11992010 - TGGTGGTGG---TTAT---------------CATCG---GG------CATCGCGCCAGATCTCGATAAGCAGCGAGCTGCTGCACGAGTCTA-G--TT---------------------CCTTGCCCATGGTGGTGGTCATTCCCAATG---CCTCTGGCGA---------ACAGGCCTACGACGACACCAAGCTCTGAGAAGCCA----------------------------------------------------------------------------------------------------
droEre2 scaffold_4845:11340183-11340325 + TGGTGGTGG---TTAT---------------CATCG---GG------CATCACGCCAGATCTCCATAAGCAGCGAGCTGCTGCACGAGTCCA-G--TT---------------------CCTTGCCCATGGTGGTGGTCATTCCCAATG---CCTCCGGCGA---------ACAGGCCTATGACGACACCAAGCTCTAATTGGCCA----------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGGTGGTGG---GGCTAGGTTCTACAATCAACAAAGCTTGG------CTGCGCGTTCAGGTTCCATTGCTGATGAGCTGCTGATCGAGCCCA-T--GA---------CGCCCTATACAAAGGTGCCCATGGTGGTGGTGGTGCCCAACA---------CAGA---------TCAAATCTATGATGATACCAAATTATGAATCGCCACCAAAAAAGACGACCATTTCGACTATCTTTA-TAAATGTACACTATATA------C-TAACAAACATATCTGTATTC--AAAATGAGCTTCCT------ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................CTGATGAGCTGCTGATCGAGC.........................................................................................................................................................................................................................2116.006302000000000000000000000000000000000000000000000000000000000010
...............................................................................CTGATCGAGCCCA-T--GA---------CGCCC..................................................................................................................................................................................................2114.004120000000000000000000000000000000000000000000000000000000000010
.....................................TTGG------CTGCGCGTTCAGGTTCC..................................................................................................................................................................................................................................................2113.003000001000000000000000000000000000100000000000000000000000000010
................................AAAGCTTGG------CTGCGCGTTCAG.......................................................................................................................................................................................................................................................2113.003000000000100000000000010000000000000000000000000000000000000010
...................................................................GCTGATGAGCTGCTGATCGAG..........................................................................................................................................................................................................................2113.003000000000000000000000000000001000000000000000000000000000000020
.............................................................................TGCTGATCGAGCCCA-T--GA---------CGC....................................................................................................................................................................................................2113.003100000000000000000000000000000000100000000000000000000000000010
...........................................................GTTCCATTGCTGATGAGCTGC..................................................................................................................................................................................................................................2113.003100000000000000000000000000000000100000000000000000000000000010
...................TTCTACAATCAACAAAGCTTG..........................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000020000000000000000000000000000
.....................CTACAATCAACAAAGCTTGG------...................................................................................................................................................................................................................................................................2012.002001000000000000000000010000000000000000000000000000000000000000
.....................................................................TGATGAGCTGCTGATCGAGCC........................................................................................................................................................................................................................2112.002000000000000000000000000000000000100000000000000000000000000010
................................................................ATTGCTGATGAGCTGCTGATT.............................................................................................................................................................................................................................2112.002001000000000000010000000000000000000000000000000000000000000000
........................CAATCAACAAAGCTTGG------CTGC...............................................................................................................................................................................................................................................................2112.002000000000000000000000100000000100000000000000000000000000000000
............................................................TTCCATTGCTGATGAGCTGCT.................................................................................................................................................................................................................................2112.002000001000000000000000000000000000000000000000000000000000000010
..................................................................................................................TACAAAGGTGCCCATGGTGG............................................................................................................................................................................2012.002002000000000000000000000000000000000000000000000000000000000000
..............................ACAAAGCTTGG------CTGCGCGTTC.........................................................................................................................................................................................................................................................2112.002001000000000000000000000000000000100000000000000000000000000000
......................................................................GATGAGCTGCTGATCGAGCCC.......................................................................................................................................................................................................................2112.002000000100000000000000000000000000000000000000000000000001000000
....................................................................CTGATGAGCTGCTGATCG............................................................................................................................................................................................................................1812.002000000000200000000000000000000000000000000000000000000000000000
........................................................................TGAGCTGCTGATCGAGCCCA-T--..................................................................................................................................................................................................................2112.002000000000000000000000000000001000000000000000000000000000000010
.....................................................................TGATGAGCTGCTGATCGAG..........................................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000020
...................TTCTACAATCAACAAAGCTTGG------...................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.......................................................TCAGGTTCCATTGCTGATGAGCTGCT.................................................................................................................................................................................................................................2611.001000000000000000100000000000000000000000000000000000000000000000
......................................................TTCAGGTTCCATTGCTGATGA.......................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
.............................................................TCCATTGCTGATGAGCTGC..................................................................................................................................................................................................................................1911.001000001000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................GTATTC--AAAATGAGCTTCCT------A2111.001000000000000000000000000000000000000000000000000000000000000010
............................................................TTCCATTGCTGATGAGCTGCTT................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TA-TAAATGTACACTATATA------C-T..........................................2111.001100000000000000000000000000000000000000000000000000000000000000
...................................................GCGTTCAGGTTCCATTGCTGA..........................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
.......................................................................ATGAGCTGCTGATCGAGC.........................................................................................................................................................................................................................1811.001100000000000000000000000000000000000000000000000000000000000000
........................................................................TGAGCTGCTGATCGAGCCCA-T--G.................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................ACA---------CAGA---------TCAAATCTATGATG.........................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................ACGACCATTTCGACTATCTT.......................................................................2011.001000000000000000000000000000000000000000100000000000000000000000
..................................................................TGCTGATGAGCTGCTGATCGA...........................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................CA---------CAGA---------TCAAATCTATGATGA........................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
...........................................................GTTCCATTGCTGATGAGCTG...................................................................................................................................................................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
......................................................................GATGAGCTGCTGATCGAGT.........................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................ATACCAAATTATGAATCGCCA....................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..........................................................GGTTCCATTGCTGATGAGCT....................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................GCCACCAAAAAAGACGACCAT...................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................CTACAATCAACAAAGCTTGG------C..................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
................................AAAGCTTGG------CTGCGCGTTCAT.......................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
............................................................TTCCATTGCTGATGAGCTGCTG................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................TATCTGTATTC--AAAATGAGCTT..........2211.001000000000000000000000000000000000000000100000000000000000000000
.......................................................................ATGAGCTGCTGATCGAGCCC.......................................................................................................................................................................................................................2011.001000000000000000000000000000000000000001000000000000000000000000
.................................AAGCTTGG------CTGCGCGTTCAGG......................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................TGATGAGCTGCTGATCGAGC.........................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
.......................................................................................GCCCA-T--GA---------CGCCCTATACAAAGGT.......................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
................................................................ATTGCTGATGAGCTGCTGATC.............................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
..........................................................................AGCTGCTGATCGAGCCCA-T--G.................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
.........................................................AGGTTCCATTGCTGATGAGCT....................................................................................................................................................................................................................................2111.001000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................AAAGACGACCATTTCGACTAT..........................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................TACCAAATTATGAATCGCCAC...................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................TGTATTC--AAAATGAGCTTCCT------T2211.001001000000000000000000000000000000000000000000000000000000000000
....GGTGG---GGCTAGGTTCTACAAT......................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................CAAAGGTGCCCATGGTGGTGG.........................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................ATACAAAGGTGCCCATGGC..............................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................GTGCCCATGGTGGTGGTGGTGCCCAAC..............................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..GTGGTGG---GGCTAGGTTCTACAATC.....................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000100000000000000000000000000
................................................TGCGCGTTCAGGTTCCATTGC.............................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................ATGATGATACCAAATTATGAATCGCC.....................................................................................................2611.001000000000000001000000000000000000000000000000000000000000000000
...............................................................................CTGATCGAGCCCA-T--GA---------CGC....................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
......................TACAATCAACAAAGCTTGG------CT.................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................AATTATGAATCGCCACCAAAA..............................................................................................2111.001000000000000000000000000000000000000001000000000000000000000000
.................................................................TTGCTGATGAGCTGCTGATCG............................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
......................TACAATCAACAAAGCTTGG------CTG................................................................................................................................................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
..............................................................................GCTGATCGAGCCCA-T--GA---------C......................................................................................................................................................................................................1811.001000000000000010000000000000000000000000000000000000000000000000
.................................................................................GATCGAGCCCA-T--GA---------CGCCCTAT...............................................................................................................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
............................................................................CTGCTGATCGAGCCCA-T--GA---------CGCCCT.................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
....................................................................CTGATGAGCTGCTGATCGAGCT........................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
..................................................................TGCTGATGAGCTGCTGATCGT...........................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..................................................................TGCTGATGAGCTGCTGATCT............................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TATCTGTATTC--AAAATGAGCT...........2111.001000000000000000000000000000000000000000000000000000000000000010
.......................................................TCAGGTTCCATTGCTGATGAG......................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
TGGTGTTGG---TAGTATGTTCTATAATCAGCATGGCTTGGCGCACGGTGCGCGTCCAAGGTCGATTGCCGATGAGCTGCTGATCGAACCCA-TGACG-----------CCCTACACCCAGGTGCCAACGGTGGTGGTGATGCCCAA------CTCA---GA---------TAAGATTTACGATGATACCAAATTATAAAATTCC----------------------------TCTACTATATGTTTACCATATA------C-TAACAAACATATCTGTATTA--CAAAAGAGCTTCCT------ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................GATTGCCGATGAGCTGCTG................................................................................................................................................................................................................................1911.001001000
.......................................................................ATGAGCTGCTGATCGAACCCA-T....................................................................................................................................................................................................................2211.001100000
droGri2
TGCTGGTAGTAGTTAT------TATAGTCAACATAG---TT------TAAAGCGTCCAACATCCATTGGTGATGAGCTCCTGATCGAGCCCA-T--GG---------CGGCATTTATGACGTTGCCAACGGTGGTGGTGGTGCCCAA---------CAGTGA---------TATAATCTATGACGATACCAAATTATAAACCGAT------------------------CATCTCTACTAGATGAATACTATATTTATACACTTACCAAACATATCTGTATTAAGAAAATGAGCTTCCTTCACTTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TTTCGGTTT---ATCT------------------------C------CTTCGCATCGTAATTCCCTAGGTGATGAATTCATAATCGAACCGA-A--TCTTGGGGCATCGCCATAT---ATAGTGCCCATGGTTGTGGTAGTACCAAATG---GCAATGGTGATGGTCATCATCATCCGTACAATGATACCAAATTATAAA----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................TAATCGAACCGA-A--TCTTGGGG..........................................................................................................................................................................................................2111.00101000
dp5
TCGTGCTG---------------------------------------CGGCACGACAAATCTCGATTAGCAGCGAGCGACTAACCGAACCCA-G--CT-----------C----TCTGCCCCTGCCCCTGGTGGTGGTCATACCCAATGGCTCCTCGGGGGA---------GCAGCACTACGACGACACAAAGCTGTGA-----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................CGGCACGACAAATCTCGATTAGCAGC.........................................................................................................................................................................................................................................2611.0010100000000
......................................................................................................................CCCCTGCCCCTGGTGGTGGCT.......................................................................................................................................................................2120.5010100000000
droPer2
TCGTGCTG---------------------------------------CGGCACGACAAATCTCGATTAGCAGCGAGCGACTAACCGAACCCA-G--CT-----------C----TCTGCCCCTGCCCCTGGTGGTGGTCATACCCAATGGCTCCTCGGGGGA---------GCAGCTCTACGACGACACAAAGCTGTGA-----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TGTTGGTGGCGCCTAT---------------CATCA---CA------CCTCGCGCCAGATCTCGATCAGCAGTGAGCTGCTGAACGAGCCCA-G--CT---------------------CCCTGCCCCTGGTGGTGGTCATACCCAATA---GCTCCGGTGA---------ACAGACTTACGACGATACCCCGCTGTGAGCCG-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................CATCA---CA------CCTCGCGCCAGATCTCGATCA..............................................................................................................................................................................................................................................2811.001100000
......................................................................................................................................TGGTCATACCCAATA---GCTCCG....................................................................................................................................................2111.001100000
droBip1
TGGTGGCGA---CTAT---------------CACCG---CA------CGTCGCGCCAGATCTCGATCAGCAGTGAGCTGCTGAGCGAGCCCA-G--CT---------------------CCCTGCCCCTGGTGGTGGTCATACCCAATA---CCTCCGGTGA---------ACAGACCTACGACGACAC---------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CGGCAGTGG---TTAT------CATCATAATCATCG---GG------CATCGCGCCAGATATCAATAAGTAGCGAGCTGCTGAGCGAGACAGCTAGCA-----------GC----CTGCCCCTGCCCCTGGTGGTGGTCATACCCAATA---TCTCCGGCGA---------ACAGAGCTACGATGACACCAAGCTGTGA-----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
C----------------------------------G---GG------CGTCGCGCCAGATCTCGATAAGCAGCGAGCTGCTGAACGAGTCCA-G--CT---------------------CCCTGCCCATGGTGGTGGTCATTCCCAATG---CCTCCGGCGA---------ACAGGCCTACGACGACACCAAGCTGTGA-----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CGGTGGCGG---TTAT---------------CATCG---GG------CATCGCGTCAGGTCTCGATTAGCAGCGAGCTGATCAACGACTCCA-G--TT---------------------GCCTGCCCATGGTGGTGGTCATTCCCAATG---CCTCTGGCGA---------ACAGGCCTACGACGACACCAAGCTATGAGAGGCC-----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TGGTGG------TTAT---------------CATCG---GG------CATCACGCCAAATCTCGATTAGCAGCGAGCTGCTGAACGAGCCCA-G--TT---------------------CCCTGCCCATGGTGGTGGTCATTCCCAATG---CCTCTGGTGA---------ACAGGCCTACGACGACACCAAGCTGTGAAAGGCCA----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TGGTGGTGG---TTAT---------------CATCG---GG------CATCGCGCCAGATCTCGGTGAGCAGCGAGCTGCTGCACGAGTCCA-G--CT---------------------CCCTGCCCTTGGTGGTGGTCATACCCAATG---CCTCCGGCGA---------ACAGGCCTACGACGACACCAAGCTGTGA-----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TGGTGG------TTAT---------------CATCG---GG------CCTCGCGCCAAATCTCGATTAGCAGCGAGCTGCTGCACGAGTCCA-G--TT---------------------CGCTGCCCATGGTGGTGGTCATTCCCAATG---CCTCCGGCGA---------ACAGACCTACGACGACACCAAGCTGTGAGAGGCCCTCA------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droEug1
TGGTGGTGG---TTAT---------------CATCG---GG------CATCACGCCAGATCTCGATAAGCAGCGAGTTGCTGCACGAGTCCA-G--TT---------------------CCCTGCCAATGGTGGTGGTCATTCCCAATG---CCTCCGGCGA---------ACAGGCCTATGACGACACCAAGCTGTGAGAGGCC-----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TGG---------TTAT---------------CATCG---GG------CATCGCGCCAGATCTCGATAAGCAGCGAGCTGCTGCACGAGTCCA-G--TT---------------------CCTTGCCCATGGTGGTGGTCATTCCCAATG---CCTCGGGCGA---------ACAGGCCTACGACGACACCAAGCTCTGA-----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................GCCCATGGTGGTGGT........................................................................................................................................................................1514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004
..G---------TTAT---------------CATCG---GG------CATCGCGCC..........................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
.................................................................................................................................................AATG---CCTCGGGCGA---------ACAGGCCTAC.............................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................CTACGACGACACCAAGCTCTG............................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GG---------TTAT---------------CATCG---GG------CATCGCGC...........................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
........................................................................CGAGCTGCTGCACGAGTCCA-G--..................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000
.............TAT---------------CATCG---GG------CATCGCGCCAGAT......................................................................................................................................................................................................................................................2311.0010000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TCGGGCGA---------ACAGGCCTACGACGA........................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GG---------TTAT---------------CATCG---GG------CATCGC.............................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
................................................................................................TT---------------------CCTTGCCCATGGTGGTGGT........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................ACGAGTCCA-G--TT---------------------CCTTGCCC...................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TGGTGGTGGTCATTCCCAATG---..........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................CG---GG------CATCGCGCCAGATCTCGA.................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................ATCGCGCCAGATCTCGATAAGCAGC.........................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.................................................................................................T---------------------CCTTGCCCATGGTGGTGGTCATTC...................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................CAGCGAGCTGCTGCACGAGTC........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..G---------TTAT---------------CATCG---GG------CATCGCGCCAG........................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................CTGCACGAGTCCA-G--TT---------------------CCTTG......................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
................................................................................................................................................CAATG---CCTCGGGCGA---------ACAGGC.................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGG---------TTAT---------------CATCG---GG------CATCGCG............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GG------CATCGCGCCAGATCTCGATAAGCAGCG........................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........................................................................................CCA-G--TT---------------------CCTTGCCCATGGTGG............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................CCTTGCCCATGGTGGTGGTCA......................................................................................................................................................................2111.0010000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................GAGTCCA-G--TT---------------------CCTTGCCCATGGTG.............................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................AGCAGCGAGCTGCTGCACGAGTCCA-G--..................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
TGG---------TTAT---------------CATCG---GG------CATCGC.............................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................GAGCTGCTGCACGAGTCC.......................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................CATCGCGCCAGATCTCGATA...............................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................TCGATAAGCAGCGAGCTGCTG................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................CGCCAGATCTCGATAAGCAGC.........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..................................................CGCGCCAGATCTCGATAAGC............................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................G---GG------CATCGCGCCAGATCTCGATAAGC............................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGG---------TTAT---------------CATCG---GG------CATCGCGCCAGATCTCGATAAGCAGCGAGCTGCTGCACGAGTCCA-G--TT---------------------CCTTGCCCATGGTGGTGGTCATTCCCAATG---CCTCGGGCGA---------GCAGGCCTACGATGACACCAAGCTCTGAGTGGC------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................CCAGATCTCGATAAGCAGCGA.......................................................................................................................................................................................................................................2111.00110000000000000000
......................................................CCAGATCTCGATAAGCAGCG........................................................................................................................................................................................................................................2011.00110000000000000000
........................................................................................................................................................................................GACACCAAGCTCTGAGTG........................................................................................................1811.00100000100000000000
.......................................................................................................................................GGTCATTCCCAATG---CCTCGGGC..................................................................................................................................................2211.00100100000000000000
droSec2
TGG---------TTAT---------------CATCG---GG------CATCGCGCCAGATCTCGATAAGCAGCGAGCTGCTGCACGAGTCCA-G--TT---------------------CCTTGCCCATGGTGGTGGTCATTCCCAATG---CCTCGGGCGA---------ACAGGCCTACGACGACACTAAGCTCTGA-----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.GG---------TTAT---------------CATCG---GG------CATCGC.............................................................................................................................................................................................................................................................1911.0010010
................................................................................................................................................................................CCTACGACGACACTAAGCTCT.............................................................................................................2111.0010001
droYak3
TGGTGGTGG---TTAT---------------CATCG---GG------CATCGCGCCAGATCTCGATAAGCAGCGAGCTGCTGCACGAGTCTA-G--TT---------------------CCTTGCCCATGGTGGTGGTCATTCCCAATG---CCTCTGGCGA---------ACAGGCCTACGACGACACCAAGCTCTGAGAAGCCA----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....GGTGG---TTAT---------------CATCG---GG------CATCGC.............................................................................................................................................................................................................................................................2211.00101000000000
.................................................TCGCGCCAGATCTCGATAAGCAGCGAGC.....................................................................................................................................................................................................................................2811.00100100000000
.....................................................GCCAGATCTCGATAAGCAGC.........................................................................................................................................................................................................................................2011.00100000010000
...........................................................................................................................................ATTCCCAATG---CCTCTGGCGA---------ACA....................................................................................................................................2311.00101000000000
........................................................AGATCTCGATAAGCAGCGAGCT....................................................................................................................................................................................................................................2211.00100000010000
.....................................................GCCAGATCTCGATAAGCAG..........................................................................................................................................................................................................................................1911.00100000010000
..............................................................................................................................................................................GGCCTACGACGACACCAAGCTCT.............................................................................................................2311.00101000000000
........................................................AGATCTCGATAAGCAGCGAGCTGCT.................................................................................................................................................................................................................................2511.00101000000000
................................................................................TGCACGAGTCTA-G--TT---------------------CCTTGC.....................................................................................................................................................................................2111.00100001000000
................................................................................................TT---------------------CCTTGCCCATGGTGGTGGTCATTCC..................................................................................................................................................................2711.00101000000000
droEre2
TGGTGGTGG---TTAT---------------CATCG---GG------CATCACGCCAGATCTCCATAAGCAGCGAGCTGCTGCACGAGTCCA-G--TT---------------------CCTTGCCCATGGTGGTGGTCATTCCCAATG---CCTCCGGCGA---------ACAGGCCTATGACGACACCAAGCTCTAATTGGCCA----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................TCCGGCGA---------ACAGGCCTATGACGACACCAA..................................................................................................................2914.0040000004
................................................ATCACGCCAGATCTCCATAAGC............................................................................................................................................................................................................................................2211.0010000010
.................................................TCACGCCAGATCTCCATAAGC............................................................................................................................................................................................................................................2111.0010000010
.................................................................................GCACGAGTCCA-G--TT---------------------CCTTGCCCATG................................................................................................................................................................................2511.0011000000
..................................................................................................................................................................................TATGACGACACCAAGCTCTAATTGGCC.....................................................................................................2711.0011000000

Generated: 05/16/2015 at 11:24 PM