dvi_784

Name	Class	Family	Strand
Helitron-2N1_DVir	RC	Helitron	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AGGATAGCTTTAGAAGTGAGGCACTGATCAGGAATATATAAACTTTATGGGGTCGGAGATGTCTCCTTCGCTGCGTTAAATATTGCGAGACCAAATTATATAATACCCTCTGCAAGGGTATAAAAATGCGCGCCGACAGCAGCTGCGTCATGCACCCTACTCGTGTATACCCTACTTTAACCGCATTTCACCCCATTGCAGACATTCGCAAGTCCTTTGGCCAGTCGCCCACCTCGTTGCGCCTGGAGCTG ************************************************((((((((....)))).((((.............)))))))).................(((((((((.....(((((((....(((.((....)))))((((((.......)))))).............)))))))...))).))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V053 head	SRR060674 9x140_ovaries_total	SRR060675 140x9_ovaries_total	SRR060682 9x140_0-2h_embryos_total	V116 male body	SRR060685 9xArg_0-2h_embryos_total	SRR060684 140x9_0-2h_embryos_total	SRR060657 140_testes_total	SRR060658 140_ovaries_total	SRR060659 Argentina_testes_total
...........................TCAGGAATATATAAACTTTATGGGG.......................................................................................................................................................................................................	25	0	2	1.00	2	0	1	1	0	0	0	0	0	0	0
...........................TCAGGAATATATAAACTTTATGGGGTC.....................................................................................................................................................................................................	27	0	2	0.50	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................AGCACCTGCGTCATTCACGCT.............................................................................................	21	3	2	0.50	1	0	0	0	0	1	0	0	0	0	0
............GGAGGGAGGCACTGATCAGGG..........................................................................................................................................................................................................................	21	3	2	0.50	1	1	0	0	0	0	0	0	0	0	0
...........................TCAGGAATATATAAAGTTTATGGGG.......................................................................................................................................................................................................	25	1	3	0.33	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................CAAGTCCGTTGGACAGTGGCC......................	21	3	3	0.33	1	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GTTAACCGGATTTCATCCC.........................................................	19	3	6	0.17	1	0	0	0	0	0	0	1	0	0	0
...............................GAATATATAAACTTTATGGGGTCGGA..................................................................................................................................................................................................	26	0	17	0.06	1	0	1	0	0	0	0	0	0	0	0
.........................................ACTTTATGGGGTCGGAGATGTCT...........................................................................................................................................................................................	23	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.................................ATATATAAACTTTATGGGGTC.....................................................................................................................................................................................................	21	0	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..........................................CTTTATGGGGTCGGAGATGTCT...........................................................................................................................................................................................	22	0	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...........................................TTTATGGGGTCGGAGATGTCT...........................................................................................................................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0

TCCTATCGAAATCTTCACTCCGTGACTAGTCCTTATATATTTGAAATACCCCAGCCTCTACAGAGGAAGCGACGCAATTTATAACGCTCTGGTTTAATATATTATGGGAGACGTTCCCATATTTTTACGCGCGGCTGTCGTCGACGCAGTACGTGGGATGAGCACATATGGGATGAAATTGGCGTAAAGTGGGGTAACGTCTGTAAGCGTTCAGGAAACCGGTCAGCGGGTGGAGCAACGCGGACCTCGAC ************************************************((((((((....)))).((((.............)))))))).................(((((((((.....(((((((....(((.((....)))))((((((.......)))))).............)))))))...))).))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	SRR060682 9x140_0-2h_embryos_total	SRR060666 160_males_carcasses_total	SRR060667 160_females_carcasses_total	V053 head	M027 male body
......CGAAATCTTCACTCCGTGACTAGTCCTT.........................................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................GGGATGCCATTGGCATAAAG..............................................................	20	3	2	0.50	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................CCGGACAGCCGGTGGAGCAG.............	20	3	8	0.13	1	1	0	0	0	0	0
...................................................................AGCGACGCTACTAATAACGC....................................................................................................................................................................	20	3	10	0.10	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................CGGGTGGAGGAACGCGCACG.....	20	3	10	0.10	1	0	0	0	1	0	0
..............................................................................................................................................................................................................CCGTTCAGGAATCCGGTAAG.........................	20	3	14	0.07	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................GCGGGTCTAGCAATGCGG........	18	3	20	0.05	1	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_10324:792193-792443 -	dvi_784	AGGATAGCTTTAGAAGTGA-------------------------------GGCACTGATCAGGAATATATAAACTTTATGGGGTCGGAGATGTCTCCTTCGCTGCGTTAAATATTGCGAGACCAAATTATATAATACCCTCT------GCAAGGGTATA----AA--AATGCGCGCCGA---------------------------------------------------------------------------------------------------------------------------CAG---------------------CAGC--TGCGTCA--------------------------------------------------------------------------------------T-------GCACCCT----------------------------------------------------------------------------------ACTCGTGTATACCCTACTTT--AACCGCAT---------TTCACC-------CC--ATT-------GC-AGACATTCG-----CAAGT-------CCTTTGGCCAGTCGCCCACCTCGTTGCGCCTGGAGC-TG
droMoj3	scaffold_6664:3571-3829 +		------------------------------------------------------CTGATCAAGAATATATATACTTTATGGGGTCTGCGATGATTCCTTCTGCCTGTTACATACTTTTCA-C-AAAACC-ATTATACCCTGA------TTT------------------------------------------------------------------------------------------------------------------CCCATTTTCAATGGGTTCAGGGTATAAGAATGGG---A----------------GCTGGGCC--------------------CAGATGCCATGGTGTGCACTCCCATGGCGTGTCCCGACGCGCCTGACACCAATACTAATGCGTGCG--------------------------------------------------------------ATTA----ACATTCGCAATGG-------------------------------------TC------------CTCCG----TTCGCA-------CAATTCG--AG----------A------------------------------------------CTGTGAGCTGTAGCTGGAGC-TG
droGri2	scaffold_13713:70-213 -		A---------------------------------------CTCGGTTAGTTGTGCTGATAAAAAATATAGATATTTTACGTAGTCGGCGCTGTCTATTTAAATGCATTACAAGCTTGATGAC-AAAATT-AGAATACCCTCT------ACAATGGGGTA----AAAAAATGCCGTCCAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGAGCAGCTGCG-CC
droWil2	scf2_1100000004511:7634250-7634482 -		G---------------------------------------------------TGCTGATCAAGAATATATATACTTTATATGGTCGGAGATGCTTCCTTCTATGCGTTGCACACTTTTGACC-AAAATT-AATATACCCTTTT----TGCAAGGGTATA----AA--AATGCAATACA------------------------------------------------------------------------------------------------------------------------------GAAA-----------------CCGAC--TGTGT-------------------------ATA------------------------------------------------------------T-------GTGT----------------------------------------------ATG-----------------------------------------------TATGTATGTGCAAATATATTTAATACATT-------TGTTTCT--GTT-------TC-AGCCAACCG-----CAAAT-------GCAGCCGCAAAGCCTTTCTTTTGTTGTGCGTGTGTG-TG
dp5	Unknown_singleton_3797:394-535 +		G--------------------------------------------------ATGCTGATCAAGAATATATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCCA---------------------------------------------------------------------------------------------------------------------CTTTTACCACAAATCTAAATACCCCAATACTCATTT----TGAGTATCGGGTATAAAAATCGA---CAGAA----------------------T--TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTC-AT
droPer2	scaffold_3421:258-425 +		G--------------------------------------------------ATGCTGATCAAGAATATATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACGC---------AAATCT-AATATACCCCAATACTC-------------------------------------------------------------------------------------------------------------------------ATTT----TGAGTATCGGGTATAAAAAGCG----------------------------------TG-----------------------------------------------------------------------------CGTCA-------------------------------------------------------------------ACTTT----------GTGAGCCGTTGCAA--GGGCCACG---------------------------------------------------------------------------------------------------------------CATATTCGTGTACCCGGTA--CT
droAna3	scaffold_12911:2474347-2474606 -		C----------------------------------------TCAGGAGGTGATCCAGATCAAGAATATATATAATTTATAGGGTCGGTGATGTCTCCATCACTGCGTTGCACACTTTTGACC-AAAATT-ATAATACCCTCT------GCAAGGGTATT----AA--AAGG-----------------------------------------------------------------------------------------------------------------------------GTTT-------------AGAT--G--------A---AGGACCACAGGACGGCAGAGACCATG-CGTGCAGTGTTAG-GGATAGCTTACTGTACCTAATAGTTTGACAAAACCGTACGT--------------------------------------------------------CCGTTATAA----ACATT--------------------------------------------------------------------------------------------------------------CA-----TAA---------CTTTTTGCCAAGCGCCCACC----TGTTTTTGCAAC-AT
droBip1	scf7180000391942:27016-27233 +		AA--------------------------------------CTCAGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCAGAGATGTCTCCTTCACTGCGTTGCACACTTTTGGAC-AAAATT-ATAATACCCTCT------GCAAGGGTATA----AA--AATATCATCCAAA------------------AATAATAGCATTACAAGAAACCCACATACAAACATCCACTTATATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCAC----CCCAAT-------TAATTAT--AT---------------------------------------------------CCCAATTCACTATAACAGTCAC-TC
droKik1	scf7180000302471:11151-11330 -		G--------------------------------------------------ATGCTGATCAAGAATATATATACTTTATAGGGTGGGAAACGTCTCCTTCACTGCGTTGCAAACTTCTGACT-GAAATT-ATAATACCCT--------GCAAGGGTATA----AA--------------------------------------------------------------------------------------------------------------------------------AATAAC----------TTGTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------TTATC--ACCACA---CATGCAAATC------------CTCTT---------TTTACT-------CG--AAT-------GC-A----------------------------GG-----------AACATTTCAATCATTTTGGCAGT
droFic1	scf7180000449830:8264-8488 +		G--------------------------------------------------ATGCTGATCAAGAATATATATACTTTATGGGGTCTGAGGTGTCTCCTTCACTGCGTTGCAAACTTCTGGAC-AAAATT-ATAATACCCTTT-GCTCTGCAAGGGTATA----AA--------------------------------------------------------------------------------------------------------------------------------AATACA------------------------------------------------------------------------------------------------------------------TCAGCTCTCACATTGAAATCGAACCCA---------------------------------AT--------A--------------------------------------TCTAGTGTGAAGCTGACATTGAAAACACAC---------TTAAGC-------AC--ATA-------AC-AGA---------------TGTGATGTCCT-----CAGCTGCCAAACACTCTACAC------C-TG
droEle1	scf7180000491107:193648-193879 -		AGCATAATTCAA-----------------------------------------AAGAATAAAGAATGTATATACTTTATAGGGTCGGAAATGTCTTCTTCACTGTGTTGCAAACTTCTGACT-CGAATT-ATAATACCCTCT------GCAAGGGTATA----AA--AATATACCTCGACTTGTTTTAATTTTCTGTGGTAGACAATATTATTTACAACTTGAAAAGGGTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACACTT---------TTCACT-------TC--ATT-------------------------------------CCCTGGATAATTGCCAAGTTCATTGCACTTAGAGC-TG
droRho1	scf7180000769831:49431-49641 -		AA--------------------------------------CTCAGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTTTTGACC-AAAATT-ATAATTCCCTCT------GCAAGGGTATA----AA--------------------------------------------------------------------------------------------------------------------------------AATAGC---C----------------TTTAAGTTCAACATGCGT-------------------------------------------------------------------CACTGTA------------------------------------------------------------------------------------------------------------------TGTGCATACATTCACAT--ACATATATTTTATGCAAT-------TGTTAATTTAC-----------CCACATTCG-----C----------------------------------------CAGTT-A-TT
droBia1	scf7180000302422:1188862-1189047 -		TG-----------------------------------------------TGACGCTGACCAAGAATATATATACTCTATGGGGTCGGAAACGTCTCCTTCACTGCGTTGCAAGCTTCTGACT-GAAATC-ATTATACCCTCT------GCGAGAA--------AA--------------------------------------------------------------------------------------------------------------------------------AATGAG---A----------------G--------------------------------------GTAT----------------------------------------------GCATGC--------------------------------------------------------CCGTCACATATGCTCATTTCTACAG-----------------------------------------------------------------------------T-----------------------TCCG-----AAAGT--------------CCATTCTCCCTCCCCGTTGTGGTCAGTCG-CA
droTak1	scf7180000414445:193342-193588 +		G--------------------------------------------------ACCCTGATCAAAAATATATATACTTTATGGGGTCGGAAACGCTTCCTTCTCCCTGTTACATACTTTTGCAC-GAATAC-AATATACCCTTTTACCCTA-------------------------------------------------------------------------------------------------------------------------------CGAGTAACGGGTATAATAATGTA----------GTACGTT-GCCTAAAACTCAC--CGTAGAA--------------------------------------------------------------------------------------T-------ATATCCT----------------------------------------------------------------------------------TCTCCT---TATCCTCCTCC--AGCCGCTC---------TTCGGTGCTGTCGAT--ATCCGACAAG--A------CTGCCGGTTCTAT-------GCAGC-----------CACCGCTCTGTGCTTTCAGCTCG
droEug1	scf7180000408987:378634-378785 +		------------------------------------------------------CTGATCAAGAATATATATACTTTATGGGGTCGGAAACGTCTCCTTCACTGCGTTACGAACTTCCGACC-AAAATT-ATAATACCCTCT------GCAAGGGTATA----AA--------------------------------------------------------------------------------------------------------------------------------AAGATGCCACTGCAACTTGT------------------------CA--------------------------------------------------------------------------------------C-------GA------------------------------------------------------------ATTT----------TCATCCGGCCACG------------CCTACTCT--A-------------------------------------------------------------------------------------------------------------AC
dm3	chr2R:11245498-11245563 +		CGTTTAACCCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-AGATATTCG-----CAAGT-------CCTTCAACCAGTCGCCCACCTCGCTGCGCCTGGAGC-TG
droSim2	2l:13676787-13676927 -		AGAAAAGTTTAAAGAATAT-------------------GGCTTGACTGTTTATACCAAT--ATAATTTATATACTTTATATGGTCGTAGATGTCTTCCTTATTGCGTTACAATCTTCTGACT-GCCATCGATAAAACCCTCT------GCAAGGATATACTCTAA--AATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_31:513131-513282 +		AGGATGG----AGAAGGGACAGTCAGTCATGTTACATAGACTCGGGTTTTGATACTGATCAAGAATATATATACTGTTTAAGGTTGTAAATGTCTCCTTTACTACGTTGCGAAATACTGACT-GAAATC-AATGTATCCTGT------GCAAGGGTATA----AA--------------------------------------------------------------------------------------------------------------------------------TAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	X:362257-362456 -		------------------------------------------------------CTGATCAAGAATATATATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTTTCAAC-GAATCT-AGTATACCCTTTTACTCTA-------------------------------------------------------------------------------------------------------------------------------CGAGTAACGGGTATAAACACATGT-------------GGCC--G--------A---CACACCA--------------------------------------------------------------------------------------C-------ACACCACACTTCACACACCACACTGCACACACCACACTGCACACACATGCACATTCACAAGGG---------------------------------------------------------------------------------------------------------------------------------------------------------TTTC-GG
droEre2	scaffold_4820:6297989-6298131 -		AGAAAAACTTTAAAATTGA--------------------------TCA--AGAACTGATCAAGAATATATATACTTTATATAGTCGGAAATGTTTCCTTCTGCCTGTTACATACTTTTCAAC-AAGTCT-AGTATACCCTTTTACTCTA-------------------------------------------------------------------------------------------------------------------------------CGAGTAAGGGGTATAAAAACAGG---C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

AGGATAGCTTTAGAAGTGA-------------------------------GGCACTGATCAGGAATATATAAACTTTATGGGGTCGGAGATGTCTCCTTCGCTGCGTTAAATATTGCGAGACCAAATTATATAATACCCTCT------GCAAGGGTATA----AA--AATGCGCGCCGA---------------------------------------------------------------------------------------------------------------------------CAG---------------------CAGC--TGCGTCA--------------------------------------------------------------------------------------T-------GCACCCT----------------------------------------------------------------------------------ACTCGTGTATACCCTACTTT--AACCGCAT---------TTCACC-------CC--ATT-------GC-AGACATTCG-----CAAGT-------CCTTTGGCCAGTCGCCCACCTCGTTGCGCCTGGAGC-TG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................................................TCAGGAATATATAAACTTTATGGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................TCAGGAATATATAAACTTTATGGGGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................GAATATATAAACTTTATGGGGTCGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................ACTTTATGGGGTCGGAGATGTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................ATATATAAACTTTATGGGGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................CTTTATGGGGTCGGAGATGTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................TTTATGGGGTCGGAGATGTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

------------------------------------------------------CTGATCAAGAATATATATACTTTATGGGGTCTGCGATGATTCCTTCTGCCTGTTACATACTTTTCA-C-AAAACC-ATTATACCCTGA------TTT------------------------------------------------------------------------------------------------------------------CCCATTTTCAATGGGTTCAGGGTATAAGAATGGG---A----------------GCTGGGCC--------------------CAGATGCCATGGTGTGCACTCCCATGGCGTGTCCCGACGCGCCTGACACCAATACTAATGCGTGCG--------------------------------------------------------------ATTA----ACATTCGCAATGG-------------------------------------TC------------CTCCG----TTCGCA-------CAATTCG--AG----------A------------------------------------------CTGTGAGCTGTAGCTGGAGC-TG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................TCCTTCTGCCTGTTACATACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.25	5	5	0	0	0	0	0
..................................................................ATATATACTTTATGGGGTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	4	0	0	0	0	0
...........................................................................................................TACATACTTTTCA-C-AAAACC-ATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0
.....................................................................TATACTTTATGGGGTCTGCGATGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
....................................................................ATATACTTTATGGGGTCTGCGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
.............................................................................................TTCCTTCTGCCTGTTACATACTTTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
....................................................................................CTGCGATGATTCCTTCTGCCTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0

droGri2

A---------------------------------------CTCGGTTAGTTGTGCTGATAAAAAATATAGATATTTTACGTAGTCGGCGCTGTCTATTTAAATGCATTACAAGCTTGATGAC-AAAATT-AGAATACCCTCT------ACAATGGGGTA----AAAAAATGCCGTCCAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGAGCAGCTGCG-CC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

G---------------------------------------------------TGCTGATCAAGAATATATATACTTTATATGGTCGGAGATGCTTCCTTCTATGCGTTGCACACTTTTGACC-AAAATT-AATATACCCTTTT----TGCAAGGGTATA----AA--AATGCAATACA------------------------------------------------------------------------------------------------------------------------------GAAA-----------------CCGAC--TGTGT-------------------------ATA------------------------------------------------------------T-------GTGT----------------------------------------------ATG-----------------------------------------------TATGTATGTGCAAATATATTTAATACATT-------TGTTTCT--GTT-------TC-AGCCAACCG-----CAAAT-------GCAGCCGCAAAGCCTTTCTTTTGTTGTGCGTGTGTG-TG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................TCCTTCTATGCGTTGCACACTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	3	0	0	0
......................................................................................GAGATGCTTCCTTCTATGCGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0

dp5

G--------------------------------------------------ATGCTGATCAAGAATATATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCCA---------------------------------------------------------------------------------------------------------------------CTTTTACCACAAATCTAAATACCCCAATACTCATTT----TGAGTATCGGGTATAAAAATCGA---CAGAA----------------------T--TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTC-AT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................................................................................................................................................................................................................TTACCACAAATCTAAATACCCCAATAC......................................................................................................................................................................................................................................................................................................................................................................................................	27	2	2.50	5	0	5	0	0	0	0	0	0	0	0
..........................................................TCAAGAATATATATACTTTATGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	1.45	29	0	29	0	0	0	0	0	0	0	0
..........................................................................................CGATTCCTTCTGGACGTTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	1.40	28	0	28	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................T----TGAGTATCGGGTATAAAAATCGA---CA................................................................................................................................................................................................................................................................................................................................................................	26	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................TACTCATTT----TGAGTATCGGGT................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.95	19	0	19	0	0	0	0	0	0	0	0
.............................................................................................TTCCTTCTGGACGTTACACACATCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.60	12	0	0	12	0	0	0	0	0	0	0
........................................................................ACTTTATGGGGTCGGAAACGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.55	11	0	11	0	0	0	0	0	0	0	0
...............................................................................................CCTTCTGGACGTTACACACATCCA---------------------------------------------------------------------------------------------------------------------CTT.................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.55	11	0	11	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................TACTCATTT----TGAGTATCGGGTA...............................................................................................................................................................................................................................................................................................................................................................................	22	20	0.55	11	0	11	0	0	0	0	0	0	0	0
...................................................................TATATACTTTATGGGGTCGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.50	10	0	0	0	0	0	0	0	0	10	0
..............................................................................................TCCTTCTGGACGTTACACACAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.45	9	0	9	0	0	0	0	0	0	0	0
.............................................................................................TTCCTTCTGGACGTTACACACATCCA---------------------------------------------------------------------------------------------------------------------CT..................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.40	8	0	0	8	0	0	0	0	0	0	0
.................................................................TATATATACTTTATGGGGTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.35	7	0	0	0	0	0	0	7	0	0	0
...........................................................................................................................................................................................................................................................TAAATACCCCAATACTCATTT----............................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................CTGGACGTTACACACATCCA---------------------------------------------------------------------------------------------------------------------C...................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.30	6	0	6	0	0	0	0	0	0	0	0
...............................................................................................CCTTCTGGACGTTACACAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.30	6	0	6	0	0	0	0	0	0	0	0
....................................................TGCTGATCAAGAATATATATACTTTATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.30	6	0	6	0	0	0	0	0	0	0	0
....................................................................ATATACTTTATGGGGTCGGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.30	6	0	6	0	0	0	0	0	0	0	0
...................................................................................TCGGAAACGATTCCTTCTGGACGTTACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.25	5	0	0	0	0	0	0	0	0	5	0
...................................................................TATATACTTTATGGGGTCGGAAACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.25	5	0	5	0	0	0	0	0	0	0	0
............................................................................TATGGGGTCGGAAACGATTCCTTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.......................................................................TACTTTATGGGGTCGGAAACGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.............................................................................................TTCCTTCTGGACGTTACAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.20	4	0	4	0	0	0	0	0	0	0	0
....................................................TGCTGATCAAGAATATATATACTTTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	0	4	0	0	0	0	0	0	0
............................................................................................ATTCCTTCTGGACGTTACACACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0
........................................................................................................CGTTACACACATCCA---------------------------------------------------------------------------------------------------------------------CTTTTA..............................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
G--------------------------------------------------ATGCTGATCAAGAATATATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................T----TGAGTATCGGGTATAAAAATCGA---..................................................................................................................................................................................................................................................................................................................................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................AAACGATTCCTTCTGGACGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.................................................................TATATATACTTTATGGGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................................................GGGGTCGGAAACGATTCCTTCTGGACGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.10	2	0	2	0	0	0	0	0	0	0	0
................................................................ATATATATACTTTATGGGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................ACACATCCA---------------------------------------------------------------------------------------------------------------------CTTTTACCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TCATTT----TGAGTATCGGGTATAAA...........................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	2	0
............................................................................................................ACACACATCCA---------------------------------------------------------------------------------------------------------------------CTTTTACCA...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................GTTACACACATCCA---------------------------------------------------------------------------------------------------------------------CTTTTACCA...........................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................TATACTTTATGGGGTCGGAAACGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.......................................................TGATCAAGAATATATATACTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................CACACATCCA---------------------------------------------------------------------------------------------------------------------CTTTTACCACAA........................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................GAAACGATTCCTTCTGGACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TCATTT----TGAGTATCGGGTATAAAAATC.......................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..................................................................ATATATACTTTATGGGGTCGGAAACGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.............................................................................ATGGGGTCGGAAACGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.......................................................TGATCAAGAATATATATACTTTATGGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................TATATACTTTATGGGGTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.................................................................................................TTCTGGACGTTACACACATCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................CTCATTT----TGAGTATCGGGTAT..............................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0

droPer2

G--------------------------------------------------ATGCTGATCAAGAATATATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACGC---------AAATCT-AATATACCCCAATACTC-------------------------------------------------------------------------------------------------------------------------ATTT----TGAGTATCGGGTATAAAAAGCG----------------------------------TG-----------------------------------------------------------------------------CGTCA-------------------------------------------------------------------ACTTT----------GTGAGCCGTTGCAA--GGGCCACG---------------------------------------------------------------------------------------------------------------CATATTCGTGTACCCGGTA--CT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................CGC---------AAATCT-AATATACCCCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................ATTT----TGAGTATCGGGTATAAAAAGCG----------------------------------....................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
.................................................................................GGTCGGAAACGATTCCTTCTGGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
....................................................TGCTGATCAAGAATATATATACTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0	0

droAna3

C----------------------------------------TCAGGAGGTGATCCAGATCAAGAATATATATAATTTATAGGGTCGGTGATGTCTCCATCACTGCGTTGCACACTTTTGACC-AAAATT-ATAATACCCTCT------GCAAGGGTATT----AA--AAGG-----------------------------------------------------------------------------------------------------------------------------GTTT-------------AGAT--G--------A---AGGACCACAGGACGGCAGAGACCATG-CGTGCAGTGTTAG-GGATAGCTTACTGTACCTAATAGTTTGACAAAACCGTACGT--------------------------------------------------------CCGTTATAA----ACATT--------------------------------------------------------------------------------------------------------------CA-----TAA---------CTTTTTGCCAAGCGCCCACC----TGTTTTTGCAAC-AT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................................................................AGAT--G--------A---AGGACCACAGGACGGCA...................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TT-------------AGAT--G--------A---AGGACCACAGGAC.......................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.....................................................................TATAATTTATAGGGTCGGTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	1	0	0	0	0	0
..............................................................................................TCCATCACTGCGTTGCACACTTTTGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................TTTGACAAAACCGTACGT--------------------------------------------------------CCGTTATA..................................................................................................................................................................................	26	12	0.08	1	1	0	0	0	0	0
..............................................................................................TCCATCACTGCGTTGCACACTTTTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
................................................................................................CATCACTGCGTTGCACACTTTTGACC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
..............................................................................................TCCATCACTGCGTTGCACAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
..................................................................ATATATAATTTATAGGGTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0

droBip1

AA--------------------------------------CTCAGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCAGAGATGTCTCCTTCACTGCGTTGCACACTTTTGGAC-AAAATT-ATAATACCCTCT------GCAAGGGTATA----AA--AATATCATCCAAA------------------AATAATAGCATTACAAGAAACCCACATACAAACATCCACTTATATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCAC----CCCAAT-------TAATTAT--AT---------------------------------------------------CCCAATTCACTATAACAGTCAC-TC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

G--------------------------------------------------ATGCTGATCAAGAATATATATACTTTATAGGGTGGGAAACGTCTCCTTCACTGCGTTGCAAACTTCTGACT-GAAATT-ATAATACCCT--------GCAAGGGTATA----AA--------------------------------------------------------------------------------------------------------------------------------AATAAC----------TTGTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------TTATC--ACCACA---CATGCAAATC------------CTCTT---------TTTACT-------CG--AAT-------GC-A----------------------------GG-----------AACATTTCAATCATTTTGGCAGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

G--------------------------------------------------ATGCTGATCAAGAATATATATACTTTATGGGGTCTGAGGTGTCTCCTTCACTGCGTTGCAAACTTCTGGAC-AAAATT-ATAATACCCTTT-GCTCTGCAAGGGTATA----AA--------------------------------------------------------------------------------------------------------------------------------AATACA------------------------------------------------------------------------------------------------------------------TCAGCTCTCACATTGAAATCGAACCCA---------------------------------AT--------A--------------------------------------TCTAGTGTGAAGCTGACATTGAAAACACAC---------TTAAGC-------AC--ATA-------AC-AGA---------------TGTGATGTCCT-----CAGCTGCCAAACACTCTACAC------C-TG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGCATAATTCAA-----------------------------------------AAGAATAAAGAATGTATATACTTTATAGGGTCGGAAATGTCTTCTTCACTGTGTTGCAAACTTCTGACT-CGAATT-ATAATACCCTCT------GCAAGGGTATA----AA--AATATACCTCGACTTGTTTTAATTTTCTGTGGTAGACAATATTATTTACAACTTGAAAAGGGTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACACTT---------TTCACT-------TC--ATT-------------------------------------CCCTGGATAATTGCCAAGTTCATTGCACTTAGAGC-TG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AA--------------------------------------CTCAGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTTTTGACC-AAAATT-ATAATTCCCTCT------GCAAGGGTATA----AA--------------------------------------------------------------------------------------------------------------------------------AATAGC---C----------------TTTAAGTTCAACATGCGT-------------------------------------------------------------------CACTGTA------------------------------------------------------------------------------------------------------------------TGTGCATACATTCACAT--ACATATATTTTATGCAAT-------TGTTAATTTAC-----------CCACATTCG-----C----------------------------------------CAGTT-A-TT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TG-----------------------------------------------TGACGCTGACCAAGAATATATATACTCTATGGGGTCGGAAACGTCTCCTTCACTGCGTTGCAAGCTTCTGACT-GAAATC-ATTATACCCTCT------GCGAGAA--------AA--------------------------------------------------------------------------------------------------------------------------------AATGAG---A----------------G--------------------------------------GTAT----------------------------------------------GCATGC--------------------------------------------------------CCGTCACATATGCTCATTTCTACAG-----------------------------------------------------------------------------T-----------------------TCCG-----AAAGT--------------CCATTCTCCCTCCCCGTTGTGGTCAGTCG-CA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

G--------------------------------------------------ACCCTGATCAAAAATATATATACTTTATGGGGTCGGAAACGCTTCCTTCTCCCTGTTACATACTTTTGCAC-GAATAC-AATATACCCTTTTACCCTA-------------------------------------------------------------------------------------------------------------------------------CGAGTAACGGGTATAATAATGTA----------GTACGTT-GCCTAAAACTCAC--CGTAGAA--------------------------------------------------------------------------------------T-------ATATCCT----------------------------------------------------------------------------------TCTCCT---TATCCTCCTCC--AGCCGCTC---------TTCGGTGCTGTCGAT--ATCCGACAAG--A------CTGCCGGTTCTAT-------GCAGC-----------CACCGCTCTGTGCTTTCAGCTCG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

------------------------------------------------------CTGATCAAGAATATATATACTTTATGGGGTCGGAAACGTCTCCTTCACTGCGTTACGAACTTCCGACC-AAAATT-ATAATACCCTCT------GCAAGGGTATA----AA--------------------------------------------------------------------------------------------------------------------------------AAGATGCCACTGCAACTTGT------------------------CA--------------------------------------------------------------------------------------C-------GA------------------------------------------------------------ATTT----------TCATCCGGCCACG------------CCTACTCT--A-------------------------------------------------------------------------------------------------------------AC	Size	Hit Count	Total Norm	Total
No Reads

dm3

CGTTTAACCCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-AGATATTCG-----CAAGT-------CCTTCAACCAGTCGCCCACCTCGCTGCGCCTGGAGC-TG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGT-------CCTTCAACCAGTCGCC.......................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTGCGCCTGGAGC-T.	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCGCTGCGCCTGGAGC-..	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGAAAAGTTTAAAGAATAT-------------------GGCTTGACTGTTTATACCAAT--ATAATTTATATACTTTATATGGTCGTAGATGTCTTCCTTATTGCGTTACAATCTTCTGACT-GCCATCGATAAAACCCTCT------GCAAGGATATACTCTAA--AATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................GTAGATGTCTTCCTTATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AGGATGG----AGAAGGGACAGTCAGTCATGTTACATAGACTCGGGTTTTGATACTGATCAAGAATATATATACTGTTTAAGGTTGTAAATGTCTCCTTTACTACGTTGCGAAATACTGACT-GAAATC-AATGTATCCTGT------GCAAGGGTATA----AA--------------------------------------------------------------------------------------------------------------------------------TAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

------------------------------------------------------CTGATCAAGAATATATATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTTTCAAC-GAATCT-AGTATACCCTTTTACTCTA-------------------------------------------------------------------------------------------------------------------------------CGAGTAACGGGTATAAACACATGT-------------GGCC--G--------A---CACACCA--------------------------------------------------------------------------------------C-------ACACCACACTTCACACACCACACTGCACACACCACACTGCACACACATGCACATTCACAAGGG---------------------------------------------------------------------------------------------------------------------------------------------------------TTTC-GG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................TACTCTA-------------------------------------------------------------------------------------------------------------------------------CGAGTAACGGGTATAAACACA.......................................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TACTCTA-------------------------------------------------------------------------------------------------------------------------------CGAGTAACGGGTATAAACA.........................................................................................................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TACTCTA-------------------------------------------------------------------------------------------------------------------------------CGAGTAACGGGTATAAACAC........................................................................................................................................................................................................................................................................................................................................................................	27	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TA-------------------------------------------------------------------------------------------------------------------------------CGAGTAACGGGTATAAAC..........................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAC-GAATCT-AGTATACCCTTTTAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................CGCTTCCTTCTGCCTGTTACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

AGAAAAACTTTAAAATTGA--------------------------TCA--AGAACTGATCAAGAATATATATACTTTATATAGTCGGAAATGTTTCCTTCTGCCTGTTACATACTTTTCAAC-AAGTCT-AGTATACCCTTTTACTCTA-------------------------------------------------------------------------------------------------------------------------------CGAGTAAGGGGTATAAAAACAGG---C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_784

scaffold_10324:792243-792393 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads