ID:

dvi_7771

 Coordinate:

scaffold_12875:18542938-18543088 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.8 -7.1 -7.1 -6.8

Flybase annnotation

exon [dvir_GLEANR_7650:7]; CDS [Dvir\GJ22359-cds]; intron [Dvir\GJ22359-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTGGTGTATTCACATACCTAAATCCTATTTTCTCTGTCTTAGAATTATACAACAATCGGACAACAAAGAATCATATTTTCTTATTTTTTGTTGGAAAAACTGAGCAAAGTAGCAAATATGCATTTCCTAGCAATTGGTTACTAAATCTTTATCTATTTGTAGTATGTAACACTTTGTTAATTTATCTCTTTATGTTTGCAGTATTTGACCGGGAATACAAACAACGAAACTTTGGTTAAAGTCATATCGGC
***********************************************************************************......((((..........(((............))).........))))********************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060679
140x9_testes_total
 V116
male body		 M061
embryo
 SRR060667
160_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060673
9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060688
160_ovaries_total
 SRR060663
160_0-2h_embryos_total
 V047
embryo
 M047
female body
 SRR060661
160x9_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060659
Argentina_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
.............................................................................................................................................................................................................TGACCGGGAATACAAACAACGAAAC..................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTATGTTTGCAGTATTTGA........................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TATACAACAATCGGACAACAAAGAAT.................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTTTTTGTTGGAAAAACTGAGC.................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AACGAAACTTTGGTTAAAGT......... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATACAAACAACGAAACTTTGGTTAAA........... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TATTGCAGTATTTGACCGGGA..................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GAAAAACTGAGCAAAGTGGCA......................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTGCAGTATTTGACCGGGAAT................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................AAATATGCATTTCCTAGCAAT..................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................ACTAAATCTTTATCTATTTGT........................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GAATACAAACCACGAAAGTGT.................. 21 3 7 0.86 6 0 1 0 0 0 0 0 0 0 0 1 0 0 2 0 1 1 0 0 0
..................................................................................................................................................................TCTGAAACACTTTGTTAATTTTTCT................................................................ 25 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AATACAAACCACGAAAGTGTGG................ 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ACGAAGATTTGGGTAAAGTCAT...... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GAATACAAACCATGAAACTGT.................. 21 3 7 0.29 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................AGTATTTGACCGGGAATTT................................. 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................AATACAAACCACGAAAGTGT.................. 20 3 20 0.25 5 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GAATACAAACCACGAAAGT.................... 19 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTTCCTAGGTATTGGTTGC.............................................................................................................. 19 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GAATACAAACAATGAAAGT.................... 19 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................CTTCTTTGTTGTTGGAAAA......................................................................................................................................................... 19 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................TGAATACAAACCACGAAA...................... 18 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
....................................................................................................................................................................................................................GAATACAAACAATGAAAGTAT.................. 21 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GAATACAAACAAAGAAAGTGT.................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AACCACATAAGTGTATGGATTTAGGATAAAAGAGACAGAATCTTAATATGTTGTTAGCCTGTTGTTTCTTAGTATAAAAGAATAAAAAACAACCTTTTTGACTCGTTTCATCGTTTATACGTAAAGGATCGTTAACCAATGATTTAGAAATAGATAAACATCATACATTGTGAAACAATTAAATAGAGAAATACAAACGTCATAAACTGGCCCTTATGTTTGTTGCTTTGAAACCAATTTCAGTATAGCCG
*********************************************************************************************************************......((((..........(((............))).........))))*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060656
9x160_ovaries_total
 V047
embryo
 M047
female body
 SRR060676
9xArg_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060681
Argx9_testes_total
 M028
head
 SRR060668
160x9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060677
Argx9_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060666
160_males_carcasses_total
 V053
head
 SRR060659
Argentina_testes_total
 SRR060670
9_testes_total
 SRR060685
9xArg_0-2h_embryos_total
........................................................................................................................................................................................................................TGTTTGTTGCTTTGAAACCAG.............. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTTGGTGGTTTGAAGCCAATT............ 21 3 2 1.50 3 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0
..........................TAAAAGAGACAGAATCTTAAT............................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGGCCCTTATGTTTGTTGCTT....................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGGCCCTTATGTTTGTTGCT........................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............TGGATTTAGGATAAAAGAGAC....................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................ATACGTAAAGGATCGTTAACCA................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................CCTGTTGTTTCTTAGTATAAA............................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TTGGGAATACATAAACATCAT....................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTTAGCCTGTTGTTTCTTAGT.................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TTAGCAATGGATATACATCAT....................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ACTGGCCCTTATGTTTGTTGC......................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTTGTTGCTTTGAAACCAGTT............ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................TGTGAAACAATTAAATAGAGAA............................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TTAATATGTTGTTAGCCTGTT............................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................AACCTTTTGGACTCGTTTCTT............................................................................................................................................ 21 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TTAGCCTTTTCTTTCTTAGTCTA............................................................................................................................................................................... 23 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CCTTAAGTATATTGCTTTGAA................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................CTGTTGTTTAGTAGTATA............................................................................................................................................................................... 18 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1
.....................TAGAATAAGAGCGACAGAAT.................................................................................................................................................................................................................. 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................CTGTTGTTTCGTAGTATAGT............................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................GAACAAAAGAGACAGAAT.................................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:18542888-18543138 + dvi_7771 TTGGTGTATTCACATACCTAA--------ATCCT---------------------------------------AT--TTTCTCTGTCTTAGAATTATACAACAAT------CGGACAACAAAGAATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTTCTTATT------TTTTGTTGGAAAAAC------------------------------------------------------------------------------------------TGAGCAA----------------------------------------------------------------------------------------------------AG-----TAGCAAATATGCATTTCCTAGCAATTGGTTACTAAATCTTTATCTATTTGT-AGTATGTAACACTTTGTTAA------------------------------------TTTATCTCTTTATGTTTGC-AGTATTTGACCGGGAATACAAACA----------------------------------------------------------------ACGAAACTTTGGTTAAAGT--CATATCG-GC----------
droMoj3 scaffold_6680:23031537-23031732 + TTAGAAAAACTAATTTCT------------------------------------TCAGTAAA-------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------TTTTA-----------------------------------------------------------------------------------------------------TAAAATAATT-CCATAATATTACGTTATTTTTCA-AA-----AGGAGGGAGATGTAGTATGCATACATATTGAGTATC--CACTGTACCAAGAGTACTTAAAGAATACACACT----------------------------------------------------------------------------------------------------GTAACACTTTGTTGAAAGTGTTT---------------------------------------------------------------ATGTAAACA----------------------------------------------------------------GAGTCCCGGTCTTTAACCC--GAAATAT-GA----------
droGri2 scaffold_15126:2993643-2993873 + GAAGTATTTTTTCCGACTTCG--------ATTTA---------------------------------------TT--TT---T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTATTATAGATTTTCGGGGGAGCA---TT------ATGTTTTTTTATTTGATT----------------------------------------ATGT---------TA---------TTGTTAGGTG-T----------------------ATAAATCGAC-----A---------------------------------------------------------A-------------------------------------------CAAACTAAAGACAACAAATTTAACGGCAATT----------------------------------------CGTTAATAATGTTTAGCTATAAGCCAACTTGTAAAAGGAGAAATAAGCTTGTTACATTTGA-GGCAATTGATT-------------------------------------------------GAAATAAGGGAAA----------------TGA--------------------GAGT-TT----------
droWil2 scf2_1100000004955:165394-165629 + CTTAAATTAA--CATATCAAA--------AC------------------TCT--TCACTAAT-------------------------------------------------------------------------------------------------------------------------------------------A----TTAAATAATACTCGTATGAAATCAGAATTTAGGGTGAAAAAAAATCTGTCAAATTT--------TTTCCCGTCACTGTATATAACATCAGTTTGCATTTGTTTTTTAAAACCTTGGATTATAAAGGACGTAA-ATT------TTATTTATTTATTTATTT----------------------------------------ACGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACTAACACAGCAGTCG-----------------------ACGAAAAAGCTTA----------------------------AGCTAAAG-----ACAGCC--AATGTGG-TC----------
dp5 Unknown_group_801:3708-3819 - CTTATGAACACACATATCTATATACCCTT----------------------------CCT-------------TTTT-T---T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT-TCTTTAAAATTTCATCAATATA---TTTTTTTT-----TTTATAT--ATAT----------------------------------------ATATTTTTT-TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTTGACCAAA-------------------------------------------------------------------------------------------------------AT----------
droPer2 scaffold_3703:2097-2213 - CTCATGGACACACATATCTATATACCCTT----------------------------CCTTTTT---------TT--TT---T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC-TCTTTAAAATTTCATCAATATAAAATT------CTTTTTTTATATA--T----A---------------------------------------------------------------------------------------TTTGATCAAAA-----TGAAGGA----------------------------------------------------------------------------------------------------AG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--AAAAAAA-TG----------
droAna3 scaffold_5997:233-384 + TTGTCACACAAACTTTA------------TTTTACCTATCAAAGTATAGATTTCCCAACAAA-------------------------------------------------------------------------------------------------------------------------------------------ATTTT--------------------------------------------------------AGGTTTCA------------------------------------TAATTT--------------------------------------------------TATAAG--TATTGGAATAAATAACA-----------------------------------------------------------------------------------------------------------------------ATTCAGC-----------------AGGAATGCAAAATTTAAAATTTTATATATCCT----TTAAGAATTCAA------------------------------------------------------------AG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAT-AA----------
droBip1 scf7180000396710:175041-175220 - ATAATGTTTACAAATAACATTA-------A--------------------------------TTAAATTAACTTTAT-T---T-----A---ATTAAATAAAATT----------------------------------------------------------------------------------------------------T--------------------------------------------------------AGGTTTTA------------------------------------ACCTTT--------------------------------------------------AATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAATTAAGGTTAATAATTAAAAAATAAATTTCTTAG------A---------------------------------TAAAAAAATTAAAA-------------TTAATAATTTAAATTATAATTTATG-TCATTTGACAAATTTTTAATT--TATATCA-TT----------
droKik1 scf7180000299191:29533-29733 - GTGGCGATTCAATTCTTCA----------TT-TTACTAGCAGTTAAAGCATTTCCTAACAA-------------------------------------------------------------------------------------------------------------------------------------------------CAATGCTATATTTGTATACAAATGAATTT--------------------------------------------------------------------------------TCTTTGGAAAAACATGAACAAT---TTTTTTTT-----TTTGTAT--AAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT------------GCTAATTTATTTTAGGACTCATTTATTTATTTATTATGT-ATTATTTGTTTGGTACAAGAACCA-----------------------ATTA--------------------------------------CAACA------------------TTTT-GG----------
droFic1 scf7180000454096:1515357-1515552 - ATGGCACATTCGCATACGGAC--------TT---------------------------------------------------T------------------------------------------------------AGTTCT----CTGTGGTTGCATAATAATAATACCCAAATGCCGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAAATTTTGTAG-----------------------------------------------------------------------------TCTGCACAAATGACGAGCGATTTTGT-----------------CGCAACA-AAAAGTTAAATCTATATGC--------------------------------------------------------------------------ATTTACGAGTATATGGCACT-----------------------------------------------------------TAA-ATCAATTGCTT-------------------------------------------------TAATTAACC-------------------------------------AAAAAAAAAAACATTTAAATTTT
droEle1 scf7180000489342:4783-5061 + TTTCTGTTTTAAAATTTTTTT------------------------------------GTTAATT---------AT--TT---TG-------ACTTAT-TAATAAT------TTGACAGTTCAGAATT--ACGCTTTTAATTTT---ATTGACATCGGAAAACGATATCATATAGCTGCCATTGGAACTATCAAATAATTAAGCTGC--------------------------------------------------------A-----AAT-------------------------------CA--------------------------------------------TCATAGCTTCAAT------G--TTTTTAAACATTTACGCAATCTAATGTGTTT-AAGAATGTTTAGTTTTTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATCTGGAAGGGTATATAAACTTCGGCTTGCCGAAGTTTGCTTCC-------------TTTCTTGTTG-------------------------------AAGACA--AGTATCG-GC----------
droRho1 scf7180000780164:85716-85897 - TTGTTTTTTTTAAATACATAG--------TTTCT---------------------------------------AC--TT---T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTCTTAC-------------------------------------------------------------------------------------------------------------------------------------------CATTA-ATTTC---------TAATCAGGTGTT----------------------ATAAAAATAA-----A---------------------------------------------------------A-------------------------------------------CAAAAATAGGACTATCAATTTGACATTGACCATTTGT--GATCTTTAT-TATTCGC-AGT--------TGTCATTAAAACTGTTTTTGTATGTTAG-------------------------------------AGCTTTCAACT-----------------------------------------------------------------------------------------------GAAAACACAATCA----------
droBia1 scf7180000299429:38371-38597 + TTATTTTATAAAAATGTATTTTAA-----A--------------------------------TTAAATTGA------AT---TA-------AATTAT-AAATAAA------TGAATATTAGTGAATATTACTTTTTTTTGTTTCTTTTTTGTATTA-ATAAATGTTTAATATAACC-TTAAAATAACTAATAAC-TACTAATTTTT--------------------------------------------------------A-----AAT-------------------------------TTTGTTTTTT--------------------------------------------TAATT------T--TTTGTTAATAAATAACTAATTTAATTTTTAT-AACTATATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTTTCTATAT--TATTACA-AT----------
droTak1 scf7180000414477:20210-20433 - TCAGAGAATTGATCATCAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-------------------------------CT--------------------------------------------TCTTTTCTTCATT------TTTTGATC------------GGTCT---ACGTGT-AAAAATGTTACCTTTTTAATATATCTTATAAACTAATT-C----------------------AAA-----AGAAGGAA---------------------------------------------------------G-------------------------------------------GAAACTTAAGCCAGCAAAT----------------------------------------------------------------------------TA--TTAACTACTTAATAATAATATTTTCAC------A---------------------------------TTAATTTTGTTAAC-------------CTTCTTACGGTAGCTATATAATATATTCGTCTGAGGGTGGTTAAATT--TATTTCG-G-----------
droEug1 scf7180000409694:65503-65607 + CGTATTTAGCTAT--------AAATTCC--------------------------CCAACTTA------------G--CATCTCCACCTCAGAAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------GAAAACATAAATATTTATATATTCCTATTTTAAATACTGAAAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACA------------------AACT-TG----------
dm3 chr2R:19259513-19259568 - TTTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACCTAACTGGGAACACGAACA----------------------------------------------------------------ACGAGACGCTTGTCAAGGT--GATATCG-GC----------
droSim2 2r:19782271-19782351 - ACACCCTACTAACTGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-------------------------------------------------------------------------------------------------------------------------------------------CTTCC-ATTCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTACCTAACTGGGAACACGAACA----------------------------------------------------------------ACGAGACGCTTGTCAAGGT--GATATCG-GC----------
droSec2 scaffold_9:2553873-2553953 - ACACCCTACTAACTGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-------------------------------------------------------------------------------------------------------------------------------------------CTTCC-ATTCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTATCTAACTGGGAACACGAACA----------------------------------------------------------------ACGAGACGCTTGTCAAGGT--GATATCG-GC----------
droYak3 3R:2729332-2729460 + AAAATTATAAAAAAT-----------------------------------------------------------------------------------------TAAGGTATGGACAATTCAAAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTTTTCATT------TTTTGATGGAAAAAATATCTACCATTATGCGAAAAATCTATATTT-----------------------------------------------------------------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACC---TTCGGTACCGCAACA----------------------------------------------------------------TTAATATATT-------------------TG----------
droEre2 scaffold_4845:20629814-20629887 - TAATTGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-------------------------------------------------------------------------------------------------------------------------------------------CTTCC-ATTTC---------TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTACCTAACTGGGAACACGAACA----------------------------------------------------------------ACGAGACACTTGTCAAGGT--GATATCG-GC----------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTGGTGTATTCACATACCTAA--------ATCCT---------------------------------------AT--TTTCTCTGTCTTAGAATTATACAACAAT------CGGACAACAAAGAATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTTCTTATT------TTTTGTTGGAAAAAC------------------------------------------------------------------------------------------TGAGCAA----------------------------------------------------------------------------------------------------AG-----TAGCAAATATGCATTTCCTAGCAATTGGTTACTAAATCTTTATCTATTTGT-AGTATGTAACACTTTGTTAA------------------------------------TTTATCTCTTTATGTTTGC-AGTATTTGACCGGGAATACAAACA----------------------------------------------------------------ACGAAACTTTGGTTAAAGT--CATATCG-GC----------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCGGGAATACAAACA----------------------------------------------------------------ACGAAAC..................................2511.001000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTTGC-AGTATTTGA........................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................TATACAACAAT------CGGACAACAAAGAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................TT------TTTTGTTGGAAAAAC------------------------------------------------------------------------------------------TGAGC..............................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------------ACGAAACTTTGGTTAAAGT--....................2011.001000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAAACA----------------------------------------------------------------ACGAAACTTTGGTTAAA........................2611.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGC-AGTATTTGACCGGGAAT................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATGCATTTCCTAGCAAT........................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAAATCTTTATCTATTTGT-.............................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATTTGACCGGGAATTT..............................................................................................................1940.251000000000000000000000000000000010000000000000000000000000000000
droMoj3
TTAGAAAAACTAATTTCT------------------------------------TCAGTAAA-------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------TTTTA-----------------------------------------------------------------------------------------------------TAAAATAATT-CCATAATATTACGTTATTTTTCA-AA-----AGGAGGGAGATGTAGTATGCATACATATTGAGTATC--CACTGTACCAAGAGTACTTAAAGAATACACACT----------------------------------------------------------------------------------------------------GTAACACTTTGTTGAAAGTGTTT---------------------------------------------------------------ATGTAAACA----------------------------------------------------------------GAGTCCCGGTCTTTAACCC--GAAATAT-GA----------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTATC--CACTGTACCAAGAGTAC............................................................................................................................................................................................................................................................................................................................2531.675200030
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACT----------------------------------------------------------------------------------------------------GTAACACTTTGTTGAAAGT.....................................................................................................................................................................................2571.007600010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTGAGTATC--CACTGTACC....................................................................................................................................................................................................................................................................................................................................2341.004300010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTATC--CACTGTACCAAGAG...............................................................................................................................................................................................................................................................................................................................2240.753100020
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACT----------------------------------------------------------------------------------------------------GTAACACTTTGTTGAAAGTGT...................................................................................................................................................................................2770.715310010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTATC--CACTGTACCAAGAGTACTT..........................................................................................................................................................................................................................................................................................................................2730.672000020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTTCA-AA-----AGGAGGGAGA.........................................................................................................................................................................................................................................................................................................................................................................21200.60121100001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTATC--CACTGTACCAAGAGT..............................................................................................................................................................................................................................................................................................................................2340.502100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTATTTTTCA-AA-----AGGAGG.............................................................................................................................................................................................................................................................................................................................................................................21200.50101000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTCA-AA-----AGGAGGGAGAT........................................................................................................................................................................................................................................................................................................................................................................21200.50101000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTATTTTTCA-AA-----AGGAGGG............................................................................................................................................................................................................................................................................................................................................................................21200.408800000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTATC--CACTGTACCAAGAGTACTTA.........................................................................................................................................................................................................................................................................................................................2730.331100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTGAGTATC--CACTGTACCAAGA................................................................................................................................................................................................................................................................................................................................2740.251100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC--CACTGTACCAAGAGTACTTAA........................................................................................................................................................................................................................................................................................................................2440.251100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATTGAGTATC--CACTGTACCAA..................................................................................................................................................................................................................................................................................................................................2440.251100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTGAGTATC--CACTGTACCAA..................................................................................................................................................................................................................................................................................................................................2540.251100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTATC--CACTGTACCAAGAGTACTTC.........................................................................................................................................................................................................................................................................................................................2840.251100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTATC--CACTGTACCAAGAGT..............................................................................................................................................................................................................................................................................................................................2240.251100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTGAGTATC--CACTGTACCA...................................................................................................................................................................................................................................................................................................................................2440.251100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA-AA-----AGGAGGGAGATGTAGT...................................................................................................................................................................................................................................................................................................................................................................21200.255400001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCA-AA-----AGGAGGGAGATG.......................................................................................................................................................................................................................................................................................................................................................................21200.255500000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTATC--CACTGTACCAAGAGTA.............................................................................................................................................................................................................................................................................................................................2440.251010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTGAGTATC--CACTGTAC.....................................................................................................................................................................................................................................................................................................................................2240.251100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----AGGAGGGAGATGTAGTATG................................................................................................................................................................................................................................................................................................................................................................21200.204400000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------------------ATGTAAACA----------------------------------------------------------------GAGTCCCGGTCTT............................2360.171100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAAACA----------------------------------------------------------------GAGTCCCGGTCT.............................2160.171100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---------------------------------------------------------------ATGTAAACA----------------------------------------------------------------GAGTCCCGGTCTTTAAC........................2860.171000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------------------ATGTAAACA----------------------------------------------------------------GAGTCCCGGTC..............................2160.171000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------------------ATGTAAACA----------------------------------------------------------------GAGTCCCGGTCTTT...........................2460.171000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTTTCA-AA-----AGGAGGGAGA.........................................................................................................................................................................................................................................................................................................................................................................22200.153300000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACT----------------------------------------------------------------------------------------------------GTAACACTTTGTTGAAAGT.....................................................................................................................................................................................2470.141100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT----------------------------------------------------------------------------------------------------GTAACACTTTGTTGAAAGTGTTT---------------------------------------------------------------ATG...............................................................................................................2870.141100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTATGCATACATATTGAGTAT................................................................................................................................................................................................................................................................................................................................................2470.141100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTATGCATACATATTGAGTATC--CACT.........................................................................................................................................................................................................................................................................................................................................2970.141100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCA-AA-----AGGAGGGAGATGTA.....................................................................................................................................................................................................................................................................................................................................................................20200.102200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTTTCA-AA-----AGGAGGGA...........................................................................................................................................................................................................................................................................................................................................................................21200.102000002
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTTTCA-AA-----AGGAGGGAGATG.......................................................................................................................................................................................................................................................................................................................................................................24200.102100001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACT----------------------------------------------------------------------------------------------------GTAACACTTTGTTG..........................................................................................................................................................................................20190.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-AA-----AGGAGGGAGATGTAGT...................................................................................................................................................................................................................................................................................................................................................................20200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-AA-----AGGAGGGAGATGTAGTA..................................................................................................................................................................................................................................................................................................................................................................21200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----AGGAGGGAGATGTAGTATGC...............................................................................................................................................................................................................................................................................................................................................................22200.051000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTTCA-AA-----AGGAGGGAGAT........................................................................................................................................................................................................................................................................................................................................................................22200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTTATTTTTCA-AA-----AGGA...............................................................................................................................................................................................................................................................................................................................................................................20200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCA-AA-----AGGAGGGAGATGTAGT...................................................................................................................................................................................................................................................................................................................................................................25200.051000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTACGTTATTTTTCA-AA-----AGG................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGTTATTTTTCA-AA-----AGGAGGGAGAT........................................................................................................................................................................................................................................................................................................................................................................28200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTCA-AA-----AGGAGGGAGATG.......................................................................................................................................................................................................................................................................................................................................................................22200.051100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA-AA-----AGGAGGGAGATGTAG....................................................................................................................................................................................................................................................................................................................................................................20200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTTATTTTTCA-AA-----AGGAGGGAGA.........................................................................................................................................................................................................................................................................................................................................................................26200.051100000
droGri2
GAAGTATTTTTTCCGACTTCG--------ATTTA---------------------------------------TT--TT---T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTATTATAGATTTTCGGGGGAGCA---TT------ATGTTTTTTTATTTGATT----------------------------------------ATGT---------TA---------TTGTTAGGTG-T----------------------ATAAATCGAC-----A---------------------------------------------------------A-------------------------------------------CAAACTAAAGACAACAAATTTAACGGCAATT----------------------------------------CGTTAATAATGTTTAGCTATAAGCCAACTTGTAAAAGGAGAAATAAGCTTGTTACATTTGA-GGCAATTGATT-------------------------------------------------GAAATAAGGGAAA----------------TGA--------------------GAGT-TT----------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CTTAAATTAA--CATATCAAA--------AC------------------TCT--TCACTAAT-------------------------------------------------------------------------------------------------------------------------------------------A----TTAAATAATACTCGTATGAAATCAGAATTTAGGGTGAAAAAAAATCTGTCAAATTT--------TTTCCCGTCACTGTATATAACATCAGTTTGCATTTGTTTTTTAAAACCTTGGATTATAAAGGACGTAA-ATT------TTATTTATTTATTTATTT----------------------------------------ACGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACTAACACAGCAGTCG-----------------------ACGAAAAAGCTTA----------------------------AGCTAAAG-----ACAGCC--AATGTGG-TC----------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACAGCAGTCG-----------------------ACGAAAAAGCT.......................................................................24203.1563063000
.............................................................................................................................................................................................................................ATGAAATCAGAATTTAGGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAACACAGCAGTCG-----------------------ACGAAAAAGCT.......................................................................27200.15300030
.........................................................................................................................................................................................................................................................................................................................................................................TATTT----------------------------------------ACGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACTAACACAG...............................................................................................................21200.10201010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTAACACAGCAGTCG-----------------------ACG...............................................................................20200.10202000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGTCG-----------------------ACGAAAAAGCT.......................................................................21200.05101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCG-----------------------ACGAAAAAGCTTA----------------------------AGCTAAAG-----A...........................27200.05100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCG-----------------------ACGAAAAAGCTTA----------------------------AGC......................................21200.05100010
...........................................................................................................................................................................................................................................................................................................................................................................TTT----------------------------------------ACGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACTAACACAGCAG............................................................................................................22200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACACAGCAGTCG-----------------------ACGA..............................................................................18200.05110000
dp5
CTTATGAACACACATATCTATATACCCTT----------------------------CCT-------------TTTT-T---T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT-TCTTTAAAATTTCATCAATATA---TTTTTTTT-----TTTATAT--ATAT----------------------------------------ATATTTTTT-TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTTGACCAAA-------------------------------------------------------------------------------------------------------AT----------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................T----------------------------------------ATATTTTTT-TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTTGACCA.....................................................................................................................2722.5050000000500
.....................................................................................................................................................................................................................................................................................................................................................................TAT--ATAT----------------------------------------ATATTTTTT-TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATT...........................................................................................................................2721.5030000000210
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTTT-TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTTGACCAAA-------------------------------------------------------------------------------------------------------AT----------2551.4070200000320
...........................................................................................................................................................................................................................................................................................................................................................................TAT----------------------------------------ATATTTTTT-TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATT...........................................................................................................................2321.0020000000200
.............................................................................................................................................................................................................................................................................................................................................................................T----------------------------------------ATATTTTTT-TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTTG.........................................................................................................................2321.0020000000200
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTTT-TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTTGACCAAA-------------------------------------------------------------------------------------------------------A...........2450.6030000000300
.......................................................................................................................................................................................................................................................................................................................................................................T--ATAT----------------------------------------ATATTTTTT-TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATT...........................................................................................................................2520.5010000000010
...........................................................................................................................................................................................................................................................................................................................................................................TAT----------------------------------------ATATTTTTT-TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTTGA........................................................................................................................2620.5010000000100
.......................................................................................................................................................................................................................................................................................................................................................................T--ATAT----------------------------------------ATATTTTTT-TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTT..........................................................................................................................2620.5010000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTT-TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTTGACCAAA-------------------------------------------------------------------------------------------------------AT----------2750.4020000000020
.......ACACACATATCTATATACCCTT----------------------------CCT-------------TTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2860.3320000000200
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTTGACCAAA-------------------------------------------------------------------------------------------------------AT----------2150.2010000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................TTT-TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTTGACC......................................................................................................................1950.2010000000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTT-TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTTGACCAAA-------------------------------------------------------------------------------------------------------A...........2650.2010000000100
............................................................................................................................................................................................................................................................................................................................................................................................................................TTT-TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTTGACCAAA-------------------------------------------------------------------------------------------------------AT----------2450.2010000000100
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTTGACCA.....................................................................................................................1750.2010000000100
........CACACATATCTATATACCCTT----------------------------CCT-------------TTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2760.1710000000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTTT-TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATA.............................................................................................................................17200.1020000000200
..........................................................................................................................................................................................................................................................................................................................................................................................................................TTTTT-TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATT...........................................................................................................................16200.0510000000010
droPer2
CTCATGGACACACATATCTATATACCCTT----------------------------CCTTTTT---------TT--TT---T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC-TCTTTAAAATTTCATCAATATAAAATT------CTTTTTTTATATA--T----A---------------------------------------------------------------------------------------TTTGATCAAAA-----TGAAGGA----------------------------------------------------------------------------------------------------AG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--AAAAAAA-TG----------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TTGTCACACAAACTTTA------------TTTTACCTATCAAAGTATAGATTTCCCAACAAA-------------------------------------------------------------------------------------------------------------------------------------------ATTTT--------------------------------------------------------AGGTTTCA------------------------------------TAATTT--------------------------------------------------TATAAG--TATTGGAATAAATAACA-----------------------------------------------------------------------------------------------------------------------ATTCAGC-----------------AGGAATGCAAAATTTAAAATTTTATATATCCT----TTAAGAATTCAA------------------------------------------------------------AG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAT-AA----------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ATAATGTTTACAAATAACATTA-------A--------------------------------TTAAATTAACTTTAT-T---T-----A---ATTAAATAAAATT----------------------------------------------------------------------------------------------------T--------------------------------------------------------AGGTTTTA------------------------------------ACCTTT--------------------------------------------------AATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAATTAAGGTTAATAATTAAAAAATAAATTTCTTAG------A---------------------------------TAAAAAAATTAAAA-------------TTAATAATTTAAATTATAATTTATG-TCATTTGACAAATTTTTAATT--TATATCA-TT----------SizeHit CountTotal NormTotal
No Reads
droKik1
GTGGCGATTCAATTCTTCA----------TT-TTACTAGCAGTTAAAGCATTTCCTAACAA-------------------------------------------------------------------------------------------------------------------------------------------------CAATGCTATATTTGTATACAAATGAATTT--------------------------------------------------------------------------------TCTTTGGAAAAACATGAACAAT---TTTTTTTT-----TTTGTAT--AAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT------------GCTAATTTATTTTAGGACTCATTTATTTATTTATTATGT-ATTATTTGTTTGGTACAAGAACCA-----------------------ATTA--------------------------------------CAACA------------------TTTT-GG----------SizeHit CountTotal NormTotal
No Reads
droFic1
ATGGCACATTCGCATACGGAC--------TT---------------------------------------------------T------------------------------------------------------AGTTCT----CTGTGGTTGCATAATAATAATACCCAAATGCCGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAAATTTTGTAG-----------------------------------------------------------------------------TCTGCACAAATGACGAGCGATTTTGT-----------------CGCAACA-AAAAGTTAAATCTATATGC--------------------------------------------------------------------------ATTTACGAGTATATGGCACT-----------------------------------------------------------TAA-ATCAATTGCTT-------------------------------------------------TAATTAACC-------------------------------------AAAAAAAAAAACATTTAAATTTTSizeHit CountTotal NormTotal
No Reads
droEle1
TTTCTGTTTTAAAATTTTTTT------------------------------------GTTAATT---------AT--TT---TG-------ACTTAT-TAATAAT------TTGACAGTTCAGAATT--ACGCTTTTAATTTT---ATTGACATCGGAAAACGATATCATATAGCTGCCATTGGAACTATCAAATAATTAAGCTGC--------------------------------------------------------A-----AAT-------------------------------CA--------------------------------------------TCATAGCTTCAAT------G--TTTTTAAACATTTACGCAATCTAATGTGTTT-AAGAATGTTTAGTTTTTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATCTGGAAGGGTATATAAACTTCGGCTTGCCGAAGTTTGCTTCC-------------TTTCTTGTTG-------------------------------AAGACA--AGTATCG-GC----------SizeHit CountTotal NormTotal
No Reads
droRho1
TTGTTTTTTTTAAATACATAG--------TTTCT---------------------------------------AC--TT---T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTCTTAC-------------------------------------------------------------------------------------------------------------------------------------------CATTA-ATTTC---------TAATCAGGTGTT----------------------ATAAAAATAA-----A---------------------------------------------------------A-------------------------------------------CAAAAATAGGACTATCAATTTGACATTGACCATTTGT--GATCTTTAT-TATTCGC-AGT--------TGTCATTAAAACTGTTTTTGTATGTTAG-------------------------------------AGCTTTCAACT-----------------------------------------------------------------------------------------------GAAAACACAATCA----------SizeHit CountTotal NormTotal
No Reads
droBia1
TTATTTTATAAAAATGTATTTTAA-----A--------------------------------TTAAATTGA------AT---TA-------AATTAT-AAATAAA------TGAATATTAGTGAATATTACTTTTTTTTGTTTCTTTTTTGTATTA-ATAAATGTTTAATATAACC-TTAAAATAACTAATAAC-TACTAATTTTT--------------------------------------------------------A-----AAT-------------------------------TTTGTTTTTT--------------------------------------------TAATT------T--TTTGTTAATAAATAACTAATTTAATTTTTAT-AACTATATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTTTCTATAT--TATTACA-AT----------SizeHit CountTotal NormTotal
No Reads
droTak1
TCAGAGAATTGATCATCAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-------------------------------CT--------------------------------------------TCTTTTCTTCATT------TTTTGATC------------GGTCT---ACGTGT-AAAAATGTTACCTTTTTAATATATCTTATAAACTAATT-C----------------------AAA-----AGAAGGAA---------------------------------------------------------G-------------------------------------------GAAACTTAAGCCAGCAAAT----------------------------------------------------------------------------TA--TTAACTACTTAATAATAATATTTTCAC------A---------------------------------TTAATTTTGTTAAC-------------CTTCTTACGGTAGCTATATAATATATTCGTCTGAGGGTGGTTAAATT--TATTTCG-G-----------SizeHit CountTotal NormTotal
No Reads
droEug1
CGTATTTAGCTAT--------AAATTCC--------------------------CCAACTTA------------G--CATCTCCACCTCAGAAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------GAAAACATAAATATTTATATATTCCTATTTTAAATACTGAAAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACA------------------AACT-TG----------SizeHit CountTotal NormTotal
No Reads
dm3
TTTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACCTAACTGGGAACACGAACA----------------------------------------------------------------ACGAGACGCTTGTCAAGGT--GATATCG-GC----------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------------ACGAGACGCTTGTCAAGGT--GAT.................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACACGAACA----------------------------------------------------------------ACGAGACGCT...............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGACGCTTGTCAAGGT--....................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTGGGAACACGAACA----------------------------------------------------------------ACGAGA...................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGACGCTTGTCAAGGT--....................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTGGGAACACGAACA----------------------------------------------------------------ACGAGACGC................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAACA----------------------------------------------------------------ACGAGACGCTTG.............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACTGGGAACACGAACA----------------------------------------------------------------ACGAGA...................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGGAACACGAACA----------------------------------------------------------------ACGAGACG.................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------------ACGAGACGCTTGTCAAGGT--GA..................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACCTAACTGGGAACA...............................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA----------------------------------------------------------------ACGAGACGCTTGTCAAGGT--GATAT...............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA----------------------------------------------------------------ACGAGACGCTTGTCAAG........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTAACTGGGAACACGAACA----------------------------------------------------------------ACGA.....................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACA----------------------------------------------------------------ACGAGACGCTTGTCAAGGT--....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGAACACGAACA----------------------------------------------------------------ACGAGA...................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGACGCTTGTCAAGGT--GATATC..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.TTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACCTAACTGGAGG.................................................................................................................19110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACACCCTACTAACTGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-------------------------------------------------------------------------------------------------------------------------------------------CTTCC-ATTCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTACCTAACTGGGAACACGAACA----------------------------------------------------------------ACGAGACGCTTGTCAAGGT--GATATCG-GC----------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTGGGAACACGAACA----------------------------------------------------------------ACGAGACGC................................2711.00100000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTGGGAACACGAACA----------------------------------------------------------------ACGAGA...................................2411.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------------ACGAGACGCTTGTCAAGGT--GAT.................2311.00100010000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGAACACGAACA----------------------------------------------------------------ACGAGACGCTTGTCAA.........................3111.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAACACGAACA----------------------------------------------------------------ACGAGA...................................1911.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAACTGGGAACACGAACA----------------------------------------------------------------ACGAG....................................2511.00101000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTGGGAACACGAACA----------------------------------------------------------------ACGAGACG.................................2611.00100000000000010000
droSec2
ACACCCTACTAACTGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-------------------------------------------------------------------------------------------------------------------------------------------CTTCC-ATTCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTATCTAACTGGGAACACGAACA----------------------------------------------------------------ACGAGACGCTTGTCAAGGT--GATATCG-GC----------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCTAACTGGGAACAC..............................................................................................................1911.0011000
droYak3
AAAATTATAAAAAAT-----------------------------------------------------------------------------------------TAAGGTATGGACAATTCAAAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTTTTCATT------TTTTGATGGAAAAAATATCTACCATTATGCGAAAAATCTATATTT-----------------------------------------------------------------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACC---TTCGGTACCGCAACA----------------------------------------------------------------TTAATATATT-------------------TG----------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................AATATCTACCATTATGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50101000000000
droEre2
TAATTGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-------------------------------------------------------------------------------------------------------------------------------------------CTTCC-ATTTC---------TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTACCTAACTGGGAACACGAACA----------------------------------------------------------------ACGAGACACTTGTCAAGGT--GATATCG-GC----------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACACGAACA----------------------------------------------------------------ACGAGACACTTGTC...........................2511.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA----------------------------------------------------------------ACGAGACACTTGTCAAGGT--GA..................2511.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACA----------------------------------------------------------------ACGAGACACTTGT............................1811.0010000010

Generated: 05/16/2015 at 09:32 PM