ID:

dvi_7770

 Coordinate:

scaffold_12875:18542542-18542692 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.2 -9.1 -9.0 -9.0

Flybase annnotation

CDS [Dvir\GJ22359-cds]; exon [dvir_GLEANR_7650:6]; intron [Dvir\GJ22359-in]

Repeatable elements

NameClassFamilyStrand
Helitron-2_DVirRCHelitron-
Hopers2DNAhAT-hobo+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCGTGCCAGCTAACACGGAATTCGAGTATCTGCGCAACATCATGTTCCAGGTAGGCAGCAGCACCAAGCTGCACACAAGAAGAATGGCTTAATCGCCTTAAAGGGTTGTAGGCTGTCTACTCCTGTATCTGATGTCGATAAGATTTGGGTCATGTGGTTGAACTGGTAAATGCCCAGTTTGGTCAGGTTATCTTAGACAGACGGACAGACGGGCAAACAGGCAGACTTGTCTACATCGACTCGGCTGTTGA
****************************************************************************************************............((.......(((..(((..((....))..)))..)))......))********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060676
9xArg_ovaries_total
 SRR060679
140x9_testes_total
 V116
male body		 SRR060655
9x160_testes_total
 SRR060658
140_ovaries_total
 SRR060670
9_testes_total
 SRR060674
9x140_ovaries_total
 SRR060678
9x140_testes_total
 M028
head
 M027
male body		 SRR060654
160x9_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060681
Argx9_testes_total
 SRR060689
160x9_testes_total
 SRR060659
Argentina_testes_total
 SRR060667
160_females_carcasses_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 V047
embryo
...............................................................................................................................TCTGATGTCGATAAGATTTGGGC..................................................................................................... 23 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................CATCATGTTCCAGGTGGGCAG................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................GTTGAACTGGTCAATGCCCGG.......................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GATAAGATTTGGGTCATGTGG.............................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TCTTAAACAGTCGGACAGCCG........................................ 21 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TGGGTCATGTTGTTGAACTGG..................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............CACGGAATTCGAGTATCTGCG......................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GGTTATCTTAGACAGACGGACA............................................ 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TCTACTCCTGCATCTGATGTC................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GGTTATCTTAGACAGACGGACAGA.......................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................AAGGGTTGTAGGCTGTCTACTC................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................ATCTGCGCAACATCATGTTCCAGT........................................................................................................................................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TTAAAGGGTTGTAGGCTGT....................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................TTAAAGGGTTGTAGGCTGTCT..................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................TCTGATGTCGATAAGATTTGGG...................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......AGCTAACACGGAATTCGAGT................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................ATGGCTAAATCGCCTTAAAGG................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTGAACTGGTAAATGCCCAGT......................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GGTTATCTTAGACAGACGGACATA.......................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTTGTCTACATCGACTCGGCTGT... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTGTAGGCTGTCTACTCCTGC............................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTGATGTCGATGGGATTTGGG...................................................................................................... 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GACAGACCGACAGACGGGCAA................................... 21 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CTACATCGACTCGGCTGTTGA 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................ACCCAAGAAGAATCGCTT................................................................................................................................................................. 18 2 6 0.33 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0
......................................................................................................................ACTGCTGTATCTGATGCCGT................................................................................................................. 20 3 13 0.15 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GCAGACTTATCGACATCG............. 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................GATGTGGTAGAACTGGTA................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................GATTTGGGGCATGGGGTT............................................................................................ 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................ACCCAAGAAGAATCGCTTG................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....GCCAGCTAGCAAGGAAGTC.................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................ACATCCCAGGTAGGCAGCA............................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGCACGGTCGATTGTGCCTTAAGCTCATAGACGCGTTGTAGTACAAGGTCCATCCGTCGTCGTGGTTCGACGTGTGTTCTTCTTACCGAATTAGCGGAATTTCCCAACATCCGACAGATGAGGACATAGACTACAGCTATTCTAAACCCAGTACACCAACTTGACCATTTACGGGTCAAACCAGTCCAATAGAATCTGTCTGCCTGTCTGCCCGTTTGTCCGTCTGAACAGATGTAGCTGAGCCGACAACT
**********************************************************************************************............((.......(((..(((..((....))..)))..)))......))**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060675
140x9_ovaries_total
 SRR060656
9x160_ovaries_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 SRR060683
160_testes_total
 V116
male body		 GSM1528803
follicle cells		 SRR060658
140_ovaries_total
 SRR060667
160_females_carcasses_total
 SRR060673
9_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060680
 9xArg_testes_total
 SRR060661
160x9_0-2h_embryos_total
 M028
head
 V047
embryo
 V053
head
 SRR060687
9_0-2h_embryos_total
..........................ATAGACGCGTTGTAGTACAAG............................................................................................................................................................................................................ 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GTCTGTCTGAACAGATGTAGCTGA.......... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................CGTGGTTCGACGTGTGTT............................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...CCGGTCGATTGTGCCTTGAG.................................................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..CACGGTCGGTTGTGCCTTAAG.................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................CTAGTGCAAGGTCCATCCGTCGTCGT............................................................................................................................................................................................ 26 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AGTCCGATAGAATCTGTCTGC................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................AGACGCGTTGTAGTGCAAGGTC......................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................TGTGTTCTTCTTACCGATTTA.............................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................CTCGTAGACGCGTTGTAGTAC............................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...ACGGTCGGTTGTGCCTTAAGC................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TGTAGTACAAGGTCCATCCGTCGTCGT............................................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTCCCAACATCCGACAGATGAGGACGT............................................................................................................................ 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................CCGACAGATGAGGACGTAGAC........................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........TTGTGCCTTAAGCTCATAGAC........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CAGCTATTCTAAACCCGGT................................................................................................... 19 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CTGTCTGCCTGTCTGCCCGTT................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CGTGTGTTCTTCTTACCGAAT................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TGGTTCGACGTGTGTTCTTCT........................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGGACGTAGACTACAGCTAT............................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GATGAGGACGTAGACTACAGC.................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................CCAGTACACCAACTTGACCAT................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................GTGGTTCGTCGGGTGTTC............................................................................................................................................................................ 18 2 12 0.25 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0
..................................................................................................................CAGATGCTGCCATAGACTA...................................................................................................................... 19 3 14 0.14 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................CTGATGATGCCATAGACTA...................................................................................................................... 19 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTTCTCCCTGTCTGCCCGATT.................................. 21 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................CTGATGCGGCCATAGACTA...................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................TTTTTCGTACCGAATTAG............................................................................................................................................................. 18 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................CCTTGTCGTGGTTAGACGTG................................................................................................................................................................................. 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................TGTCTGGACAGGTGTAGCTG........... 20 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................CGACGTGTGCCGTTCTTAC..................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................ACCAGACAACTAGAATCTG..................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:18542492-18542742 + dvi_7770 GCGTGCCAGCTAACACGGAATTCGAGTATCTGCGCAACATCATGTTCCAGGTAGGCAGCAGCACCAAGCTGCACACAAGAAGAATGGCTTAATCGCCTTAAA--GGGTTGTAGGCTGTCTACTCCTGTATCTGAT--------GTC-----------------GA-------------------------------------------------------------T-----------------AAGATTTGGGTCATGTGGTTGAACTGGTAAATGCCCAGTTTGGTCAG-----------------------------------------------------------------------GTTATCTTAGACAGACGGACAGACGGGCAAACAG----------------GCAGACT------TGTCTACATCGACTCGGCTGTTGA
droMoj3 scaffold_6496:12194562-12194616 + GCGTGCCAGCTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGAGTTCG----------------AGTATCT------GCGCAACATCATGTTCCAGGTAAG
droGri2 scaffold_14906:13837888-13838000 + ATGAG----------------------------------------------------------------------------------------------------------------------A-----AT-----------------------------------------------------------------------------------------------------------------ACGATTTGGTTAATAT----------------------------------------------------------------------ACGAAAATGTATATTCACAATTTGAAAACAATGAGG----GTG----TATTCACACAGACGGATAG----------------ACGGACA------CGTCTAAATCATTTCAGCTGTTAA
droWil2 scf2_1100000004521:9617959-9618111 + TGACT-----------------------------------------------------------------------------AT---------------------------------------TTTTTGTCCGAT--------TTTGATCAAATTTGGTATTTTGT----TGGA-----------T-----ATTAGTAAC---------------------------AAATTTAAGT------------------------GTACCAAATTTGATTGAA----TTAGGTAG---------------------------------------------AAAA----------------------ATGC----GGA----CAGACGGGCGGACGGGCAG----------------ACGGACA------TGGCTAGATCGACTCGGCTGTAGA
dp5 2:733844-733993 - CTGCA----------------------------------------------------------------------------------------------------------------------------TCTTGA--------ATGTA---------------GG-------------------------------------------------------------A-----------------TAGATTTTCGTCTGGAAGCT--------GGACTAATAA---ATAATT-----------------------TCCATATGCTTTGATTACGCAGGCCTACTTGGACAGGCAGAAAT----CAAC----CAC----------CACGTGGAAACAG----------------ACAGACA------TCGCTATATCGACTCGGCTATTGA
droPer2 scaffold_3:737098-737232 + CTGTT----------------------------------------------------------------------------------------------------------------------T-----TCTCGT--------AT-----------------------CTGGGAA--ATTGTGGATGCCAC------------------------------------------------------AGATTTTCGCC------CTTTGTGGTGGCGGAAGTGGTCGGGGCAA----------------------------------------------AGT-----------TTTG-------A--------AA----CGGACGGACGGCCTGACAG----------------ACAGACA------TGGCTCAATCGACTAAGCTATTGA
droAna3 scaffold_13230:1322383-1322495 - GATGT----------------------------------------------------------------------------------------------------------------------G---------------------------------------GG-------------------------------------------------------------C-----------------AAAGTTTCGACTCGATAGCTCTAAAACTGAGAGACTAGTTTGCGTAG-----------------------------------------------------------------------AAAC----CGA----CAGACAGACAGACGGACAG----------------GCGGACA------TGCTCATATCGATTCAGGAGGTGA
droBip1 scf7180000394922:2834-2944 + AAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAGTCGATTGCTTTAAAACTGAGAGACTAGTTCGCTTAG-----------------------------------------------------------------------AAACTGACAGA----CAGACTGACAGACGGACAG----------------ACGGACATGCT--CATATGTATCAATTCAGGAGGTGA
droKik1 scf7180000302405:7797-7911 + CCTGT----------------------------------------------------------------------------------------------------------------------A-----TA--------------------------------TG-------------------------------------------------------------C-----------------AAAGTTTCAGTCAGATAGCTTTAAAACTGAGGGACTAGTTTGCGTAG-----------------------------------------------------------------------AAAC----GGA----CAGGTGGACAGACGGACAG----------------ACGGACT------TGGCTAGATCGACTCGGCTGTTGA
droFic1 scf7180000453804:27198-27306 + TTGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGTTTCAGCAAGATAGCTTTAAAAATGAGAGACTAGTTTGGGCAG-----------------------------------------------------------------------AAAC----GGA----CAGGAGGACAGACGGACAG----------------ACGTACA------GACGTATTTCGATTCAGATGGTGA
droEle1 scf7180000490971:477852-478025 + AGAAA-----------------------------------------------------------------------------AATCTTTTAGTTCTTTTAAAAAAATTTCCGACTTGTATA----------------------------------------------------C-----------T-----ACCTGTAACATATCATGAAGACAACTTTTGG----G-----------------AAAGTTTCATGCTGAAAGTTTTAAAACTTACAAACCAGTTTGCGTAG---------------------------------------------------------------------------------------AAACGGACCGACGGTCAG----------------ACGGTCA------TGGCTAGATCGACTCTCCTATTGA
droRho1 scf7180000763754:1490-1621 + CTGTC----------------------------------------------------------------------------------------------------------------------TGTCTGTCTGTCTGTCTATAAGT--------CGGCCGTTCCG--------------------------------------------------------------------------------------------------TTTAAAACTGAGAGACTAGTTCGCTTAG-----------------------------------------ACACAGAC----------------------AGAC----GGA----CAGACCGACGGACAGACAG----------------ACGGACA------TGCTTATATCAACTCAGGACGCGA
droBia1 scf7180000299930:12339-12484 + GTTGTCTGATCCA---------------------------------------------------------------------------------------GA--TGGTT---------------------CCGAC--------ATGGA--------------TGA-------------------------------------------------------------G-----------------AAAGTTTCAGCCAGATAGCTTTAAAACTGAAAGACTAGTTTGCGTAG-----------------------------------------------------------------------AAACAAGCGGACAAAAGGACAGACGGAAGGATAG----------------ACGGACA------TAGCTAGATCCACTCGTCTAGTAA
droTak1 scf7180000413928:14264-14413 + GCTTACTTGCCCA--------------------------------------------------------------------------------------AAA--CGGTT----------------------TAGGGCTCCGCGCGT--------AACAAGCTTTGCTTGG-------------------------------TGTCGTAAGGGCCACTTGTTTGTAC-TAACCATAGT--------------------------------------------------GCAT-----------------------------------------------------------------------CAAC----GTC--CAAGTATATACAGACGGACAG----------------ACGGACA------TGGCTAGATCGACTTGGCTAGTGA
droEug1 scf7180000407821:1096-1219 - TTTTG----------------------------------------------------------------------------------------------------------------------T----ATCTCTT--------ATAGA----------------------------------------------------------------------------------------------------------TGATACAGCGTTCATACGGACAGACGAACAGACGAAC-----------------------------------------------------------------------AGAT----GGA----CAGACGGACAGACGGACAGACGGACAAACGG----ACGGACA------TGGCTCATTCGTCTTCGCTATTCA
dm3 chr2RHet:1008644-1008706 + AAATT----------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT----GTA----CAGTCGGACAGACAGTTAG----------------ACAGGCA------TGTCTAGATCGACTCGGCAATTGA
droSim2 node_115087:502-632 + CCTGC----------------------------------------------------------------------------------------------------------------------G-----TCTTTGCCTATAGAATT--------TGTATTTTTTGCTTAATCTCAACCTTCTAGCTTTAAT-------------------------------------------AGTTTCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----CATACGGACAGATGGACAG----------------ACGGACA------TGGCTAGATCGACTCGGCTATTGA
droSec2 scaffold_108:43358-43459 + GTGGC----------------------------------------------------------------------------------------------------------------------C-----ACATGA--------GT-----------------------AAACACA--CCTGTAGCTTTTTT-------------------------------------------AGTTTTTGAT----------------------------------------------------------------------------------------------------------------------ATTC----TGA----CGTTCATACGGACGGGCAG----------------ACGGAAA------TGATCAGATCGACTCGGCTATTGA
droYak3 2L:22164104-22164241 + TTGTGGT-----------------------------------------------------------------------------GC-------------------------------------G-----TCTATGTCTCTGGAGTC--------GGTA-----TGCTTTATCTCAACTTTCTAGCTTTTGT-------------------------------------------AGATCCTGAG-------------------------------ATCTTA----GCGTTA-----------------------------------------------------------------------ATAC----GAA----CGAACAGACGGACGGACAG----------------AAGGACA------TGGCCAGATCGACTCGGCTATTGA
droEre2 scaffold_4929:22409642-22409797 - GCTTA----------------------------------------------------------------------------------------------------------------------A-----TC-----------------------------------------TCCTTATTCTAGCTTTTGT---------------------------------AC-TA----TAGTTCCTGAG-------------------------------A------------TCGAGGCGTTCATACGGACAGACGGA--CAAAC-------GGAC------------------------------GGAC----GGA----CAAACGGACAGACGGACAAACGGACAGACGGGCTGACGGACAGACTGAT-GACAGTTCGACACGGCTATTGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GCGTGCCAGCTAACACGGAATTCGAGTATCTGCGCAACATCATGTTCCAGGTAGGCAGCAGCACCAAGCTGCACACAAGAAGAATGGCTTAATCGCCTTAAA--GGGTTGTAGGCTGTCTACTCCTGTATCTGAT--------GTC-----------------GA-------------------------------------------------------------T-----------------AAGATTTGGGTCATGTGGTTGAACTGGTAAATGCCCAGTTTGGTCAG-----------------------------------------------------------------------GTTATCTTAGACAGACGGACAGACGGGCAAACAG----------------GCAGACT------TGTCTACATCGACTCGGCTGTTGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................TCTGAT--------GTC-----------------GA-------------------------------------------------------------T-----------------AAGATTTGGGC..................................................................................................................................................................................................2312.002000002000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GA-------------------------------------------------------------T-----------------AAGATTTGGGTCATGTGG...........................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.............CACGGAATTCGAGTATCTGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................G-----------------------------------------------------------------------GTTATCTTAGACAGACGGACA..................................................................2211.001000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................G-----------------------------------------------------------------------GTTATCTTAGACAGACGGACAGA................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................AA--GGGTTGTAGGCTGTCTACTC.....................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
...........................ATCTGCGCAACATCATGTTCCAGT..............................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
.................................................................................................TTAAA--GGGTTGTAGGCTGT...........................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000010000000000000000000000000000000
.................................................................................................TTAAA--GGGTTGTAGGCTGTCT.........................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
.................................................................................................................................TCTGAT--------GTC-----------------GA-------------------------------------------------------------T-----------------AAGATTTGGG...................................................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
.......AGCTAACACGGAATTCGAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................TTGAACTGGTAAATGCCCAGT......................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CT------TGTCTACATCGACTCGGCTGT...2311.001000000001000000000000000000000000000000000000000000000000000000
...........................................................................................................TTGTAGGCTGTCTACTCCTGC.................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTACATCGACTCGGCTGTTGA2120.501100000000000000000000000000000000000000000000000000000000000000
droMoj3
GCGTGCCAGCTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGAGTTCG----------------AGTATCT------GCGCAACATCATGTTCCAGGTAAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ATGAG----------------------------------------------------------------------------------------------------------------------A-----AT-----------------------------------------------------------------------------------------------------------------ACGATTTGGTTAATAT----------------------------------------------------------------------ACGAAAATGTATATTCACAATTTGAAAACAATGAGG----GTG----TATTCACACAGACGGATAG----------------ACGGACA------CGTCTAAATCATTTCAGCTGTTAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TGACT-----------------------------------------------------------------------------AT---------------------------------------TTTTTGTCCGAT--------TTTGATCAAATTTGGTATTTTGT----TGGA-----------T-----ATTAGTAAC---------------------------AAATTTAAGT------------------------GTACCAAATTTGATTGAA----TTAGGTAG---------------------------------------------AAAA----------------------ATGC----GGA----CAGACGGGCGGACGGGCAG----------------ACGGACA------TGGCTAGATCGACTCGGCTGTAGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................GCAG----------------ACGGACA------TGGCTAGAT...............20140.07101000
...................................................................................................................................................................................................................................................................................................................................................................................................GACGGGCAG----------------ACGGACA------TGG.....................19160.06100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGATCGACTCGGCTGTA..20190.05100010
....................................................................................................................................GAT--------TTTGATCAAATTTGGT..................................................................................................................................................................................................................................................................................................19200.05100010
......................................................................................................................................T--------TTTGATCAAATTTGGTATTT..............................................................................................................................................................................................................................................................................................21200.05110000
dp5
CTGCA----------------------------------------------------------------------------------------------------------------------------TCTTGA--------ATGTA---------------GG-------------------------------------------------------------A-----------------TAGATTTTCGTCTGGAAGCT--------GGACTAATAA---ATAATT-----------------------TCCATATGCTTTGATTACGCAGGCCTACTTGGACAGGCAGAAAT----CAAC----CAC----------CACGTGGAAACAG----------------ACAGACA------TCGCTATATCGACTCGGCTATTGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................GATTTTCGTCTGGAAGCT--------GG...............................................................................................................................................................................2011.0010000000010
droPer2
CTGTT----------------------------------------------------------------------------------------------------------------------T-----TCTCGT--------AT-----------------------CTGGGAA--ATTGTGGATGCCAC------------------------------------------------------AGATTTTCGCC------CTTTGTGGTGGCGGAAGTGGTCGGGGCAA----------------------------------------------AGT-----------TTTG-------A--------AA----CGGACGGACGGCCTGACAG----------------ACAGACA------TGGCTCAATCGACTAAGCTATTGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................AC------------------------------------------------------AGATTTTCGCC------CTTTGTGGT..................................................................................................................................................................................2260.171010000
droAna3
GATGT----------------------------------------------------------------------------------------------------------------------G---------------------------------------GG-------------------------------------------------------------C-----------------AAAGTTTCGACTCGATAGCTCTAAAACTGAGAGACTAGTTTGCGTAG-----------------------------------------------------------------------AAAC----CGA----CAGACAGACAGACGGACAG----------------GCGGACA------TGCTCATATCGATTCAGGAGGTGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................AAAACTGAGAGACTAGTTTGCGTAG-----------------------------------------------------------------------AAAC----...............................................................................29200.408080000
......................................................................................................................................................................................................................................................................................CTAGTTTGCGTAG-----------------------------------------------------------------------AAAC----CGA----........................................................................20200.255500000
...........................................................................................................................................................................................................................................................CGACTCGATAGCTCTAAAACTGAGA.............................................................................................................................................................................2540.251010000
...........................................................................................................................................................................................................................................................................................................................................................................................GACAGACAGACGGACAG----------------GCGGA................................22130.152000002
...........................................................................................................................................................................................................................................................................................................................................................................................................G----------------GCGGACA------TGCTCATATC..............18200.051010000
..........................................................................................................................................................................................................................................................................................TTTGCGTAG-----------------------------------------------------------------------AAAC----CGA----CAGACAGACAGA............................................................28200.051001000
...............................................................................................................................................................................................................................................................................................................................................................................................GACAGACGGACAG----------------GCGGACA------TT......................22200.051000001
droBip1
AAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAGTCGATTGCTTTAAAACTGAGAGACTAGTTCGCTTAG-----------------------------------------------------------------------AAACTGACAGA----CAGACTGACAGACGGACAG----------------ACGGACATGCT--CATATGTATCAATTCAGGAGGTGASizeHit CountTotal NormTotal
No Reads
droKik1
CCTGT----------------------------------------------------------------------------------------------------------------------A-----TA--------------------------------TG-------------------------------------------------------------C-----------------AAAGTTTCAGTCAGATAGCTTTAAAACTGAGGGACTAGTTTGCGTAG-----------------------------------------------------------------------AAAC----GGA----CAGGTGGACAGACGGACAG----------------ACGGACT------TGGCTAGATCGACTCGGCTGTTGASizeHit CountTotal NormTotal
No Reads
droFic1
TTGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGTTTCAGCAAGATAGCTTTAAAAATGAGAGACTAGTTTGGGCAG-----------------------------------------------------------------------AAAC----GGA----CAGGAGGACAGACGGACAG----------------ACGTACA------GACGTATTTCGATTCAGATGGTGASizeHit CountTotal NormTotal
No Reads
droEle1
AGAAA-----------------------------------------------------------------------------AATCTTTTAGTTCTTTTAAAAAAATTTCCGACTTGTATA----------------------------------------------------C-----------T-----ACCTGTAACATATCATGAAGACAACTTTTGG----G-----------------AAAGTTTCATGCTGAAAGTTTTAAAACTTACAAACCAGTTTGCGTAG---------------------------------------------------------------------------------------AAACGGACCGACGGTCAG----------------ACGGTCA------TGGCTAGATCGACTCTCCTATTGASizeHit CountTotal NormTotal
No Reads
droRho1
CTGTC----------------------------------------------------------------------------------------------------------------------TGTCTGTCTGTCTGTCTATAAGT--------CGGCCGTTCCG--------------------------------------------------------------------------------------------------TTTAAAACTGAGAGACTAGTTCGCTTAG-----------------------------------------ACACAGAC----------------------AGAC----GGA----CAGACCGACGGACAGACAG----------------ACGGACA------TGCTTATATCAACTCAGGACGCGASizeHit CountTotal NormTotal
No Reads
droBia1
GTTGTCTGATCCA---------------------------------------------------------------------------------------GA--TGGTT---------------------CCGAC--------ATGGA--------------TGA-------------------------------------------------------------G-----------------AAAGTTTCAGCCAGATAGCTTTAAAACTGAAAGACTAGTTTGCGTAG-----------------------------------------------------------------------AAACAAGCGGACAAAAGGACAGACGGAAGGATAG----------------ACGGACA------TAGCTAGATCCACTCGTCTAGTAASizeHit CountTotal NormTotal
No Reads
droTak1
GCTTACTTGCCCA--------------------------------------------------------------------------------------AAA--CGGTT----------------------TAGGGCTCCGCGCGT--------AACAAGCTTTGCTTGG-------------------------------TGTCGTAAGGGCCACTTGTTTGTAC-TAACCATAGT--------------------------------------------------GCAT-----------------------------------------------------------------------CAAC----GTC--CAAGTATATACAGACGGACAG----------------ACGGACA------TGGCTAGATCGACTTGGCTAGTGASizeHit CountTotal NormTotal
No Reads
droEug1
TTTTG----------------------------------------------------------------------------------------------------------------------T----ATCTCTT--------ATAGA----------------------------------------------------------------------------------------------------------TGATACAGCGTTCATACGGACAGACGAACAGACGAAC-----------------------------------------------------------------------AGAT----GGA----CAGACGGACAGACGGACAGACGGACAAACGG----ACGGACA------TGGCTCATTCGTCTTCGCTATTCASizeHit CountTotal NormTotal
No Reads
dm3
AAATT----------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT----GTA----CAGTCGGACAGACAGTTAG----------------ACAGGCA------TGTCTAGATCGACTCGGCAATTGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................GACAGACAGTTAG----------------ACAGGCA------T.......................2126.001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000
............................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCA------TGTCTAGATCGACT..........2125.501100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCA------TGTCTAGATCGACTC.........2122.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000
....T----------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT----GTA----CAGTCGGACAGA............................................................2122.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000003000
..ATT----------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT----GTA----CAGTCGGACA..............................................................2122.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000002100
..........................................................................................................................................................................................................................................................................................................................................................................TTTT----GTA----CAGTCGGACAGACA..........................................................2122.0040000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000002000
.AATT----------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT----GTA----CAGTCGGACAGACAGT........................................................2821.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGATCGACTCGGCAATTGA2131.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000003000
.................................................................................................................................................................................................................................................................................................................................................................................................CAGACAGTTAG----------------ACAGGCA------TGT.....................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGATCGACTCGGCAATTGA2221.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................GTA----CAGTCGGACAGACAGTTA......................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
...........................................................................................................................T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT----GTA----CAGTCGGACAGA............................................................2021.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
..................................................................................................................................................................................................................................................................................................................................................................................................AGACAGTTAG----------------ACAGGCA------TGTC....................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000001000
...TT----------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT----GTA----CAGTCGGACAG.............................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GGCA------TGTCTAGATCGACTCGG.......2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................CAGACAGTTAG----------------ACAGGCA------TGTCT...................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................TA----CAGTCGGACAGACAGTTAG----------------.....................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTAGATCGACTCGGCAAT...2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GGACAGACAGTTAG----------------ACAGG................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...TT----------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT----GTA----CAGTCGGAC...............................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................TA----CAGTCGGACAGACAGTTAG----------------ACAGGC...............................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TTT----GTA----CAGTCGGACAGACAG.........................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................TA----CAGTCGGACAGACAGTTAG----------------ACAGG................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------TGTCTAGATCGACTCGG.......2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................................................................................................................................................TT----GTA----CAGTCGGACAGACAGTTAG----------------A....................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AGGCA------TGTCTAGATCGACTCG........2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.AATT----------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT----GTA----CAGTCGGAC...............................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................AGACAGTTAG----------------ACAGGCA------TG......................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................TTT----GTA----CAGTCGGACAGACAGT........................................................2220.5010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AATT----------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT----GTA----CAGTCGGACAGAC...........................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
AAATT----------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT----GTA----CAGTCGGA................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGATCGACTCGGCAATTG.2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................TTTT----GTA----CAGTCGGACAGA............................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................TTTT----GTA----CAGTCGGACAGACAGTTA......................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................TTTT----GTA----CAGTCGGACAGACAGTTAG----------------A....................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....T----------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT----GTA----CAGTCGGACAGACAGTTA......................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...........................................................................................................................T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT----GTA----CAGTCGGACA..............................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GACAGTTAG----------------ACAGGCA------TGTCTAGATCGAC...........2920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................GACAGACAGTTAG----------------ACAGG................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CA------TGTCTAGATCGACTCGA.......1970.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CA------TGTCTAGATCGACTCGGCT.....21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CCTGC----------------------------------------------------------------------------------------------------------------------G-----TCTTTGCCTATAGAATT--------TGTATTTTTTGCTTAATCTCAACCTTCTAGCTTTAAT-------------------------------------------AGTTTCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----CATACGGACAGATGGACAG----------------ACGGACA------TGGCTAGATCGACTCGGCTATTGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................T-------------------------------------------AGTTTCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----CATA....................................................................2626.001200000003061020000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGGACA------TGGCTAGATCGACTCGGCTA....26203.7074000000230010653000
...........................................................................................................................................................................................................................................................................................................................................................................................................G----------------ACGGACA------TGGCTAGATCGACTCGGC......26202.6052000000110000491000
................................................................................................................................................................................................................................................TGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----CATACGGACAGA............................................................2792.5623002000108210000000
.............................................................................................................................................................................................AT-------------------------------------------AGTTTCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----........................................................................2322.50500000000000050000
..............................................................................................................................................................................................T-------------------------------------------AGTTTCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----C.......................................................................2321.50300000000000021000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGGACA------TGGCTAGATCGACTCGGC......24201.1022000000130000180000
.........................................................................................................................................TATAGAATT--------TGTATTTTTTGCTTAATC.....................................................................................................................................................................................................................................................................................2711.00100000010000000000
.............................................................................................................................................................................................................................................TTCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----CATACGGACA..............................................................2821.00200200000000000000
.............................................................................................................................................................................................................................................TTCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GT.............................................................................1731.00300000000003000000
..............................................................................................................................................................................................T-------------------------------------------AGTTTCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----CAT.....................................................................2521.00200000000001010000
...................................................................................................................................................................................................................................................................................................................................................................................TT----CATACGGACAGATGGACAG----------------ACGGACA------........................2821.00200000001000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGGACA------TGGCTAGATCGACTCGGCT.....25200.9519000000610003000000
................................................................................................................................................................................................................................................TGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----CATACGGACA..............................................................25100.80800000004120010000
...................................................................................................................................................................................................................................................................................................................................................................................TT----CATACGGACAGATGGACAG----------------ACGG.................................2550.80400000000000040000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGGACA------TGGCTAGATCGACTCGG.......23200.701400000053001041000
................................................................................................................................................................................................................................................................................................TAT-----------------------------------------------------------------------CGAC----GTT----CATACGGACAGAT...........................................................2330.67200000000002000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TGGACAG----------------ACGGACA------TGGCTAGATCGACT..........2830.67200000002000000000
..............................................................................................................................................................................................................................................TCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----G..............................................................................1530.67200000000002000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TGGACAG----------------ACGGACA------TGGCTAGATCGACTC.........2930.67200000002000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TGGACAG----------------ACGGACA------TGGCTAGATCGA............2630.67200000010000010000
.............................................................................................................................................................................................................................................TTCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----CATACGGAC...............................................................2720.50100000001000000000
.............................................................................................................................................................................................................................................TTCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----CATACGGA................................................................2620.50100010000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GATGGACAG----------------ACGGACA------TGGCTAGAT...............2520.50100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................CATACGGACAGATGGACAG----------------ACGGACA------........................2620.50100000000000010000
..............................................................................................................................................................................................T-------------------------------------------AGTTTCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GT.............................................................................2120.50100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................ATACGGACAGATGGACAG----------------ACGGACA------........................2520.50100000001000000000
.............................................................................................................................................................................................................................................TTCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----CATACG..................................................................2420.50100000000001000000
..............................................................................................................................................................................................T-------------------------------------------AGTTTCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----CATACGG.................................................................2920.50100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TACGGACAGATGGACAG----------------ACGGACA------........................2420.50100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AG----------------ACGGACA------TGGCTAGATCGACTCGGC......27200.5010000000000000100000
.............................................................................................................................................................................................AT-------------------------------------------AGTTTCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----CAT.....................................................................2620.50100000000000010000
..............................................................................................................................................................................................................................................TCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----CATACGG.................................................................2420.50100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................T----CATACGGACAGATGGACAG----------------ACGGACA------........................2720.50100000010000000000
.............................................................................................................................................................................................AT-------------------------------------------AGTTTCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----CATA....................................................................2720.50100000000010000000
............................................................................................................................................................................................................................................TTTCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----CATACGGA................................................................2720.50100000001000000000
..............................................................................................................................................................................................T-------------------------------------------AGTTTCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----CA......................................................................2420.50100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................TACGGACAGATGGACAG----------------ACGGACA------TGG.....................2720.50100000000010000000
..........................................................................................................................................................................................................................................................................................................................................................................................ATACGGACAGATGGACAG----------------ACGGAC...............................2420.50100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................TACGGACAGATGGACAG----------------ACGGA................................2250.40200000000000020000
............................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACA------TGGCTAGATCGACTCGGCT.....26200.40800000062000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTAGATCGACTCGGCTATTGA24200.40800000020300030000
.........................................................................................................................................................................................................................................................................................................................................................................................................CAG----------------ACGGACA------TGGCTAGATCGACTCGGC......28200.40800000010000070000
.........................................................................................................................................................................................................................................................................................................................................................................................................CAG----------------ACGGACA------TGGCTAGATCGACTC.........25200.40800000001102040000
..........................................................................................................................................................................................................................................................................................................................................................................................ATACGGACAGATGGACAG----------------ACGGTAT------........................2550.40200000000000020000
...................................................................................................................................................................................................................................................................................................................................................................................TT----CATACGGACAGATGGACAG----------------ACGGA................................2650.40200000000000011000
................................................................................................................................................................................................................................................................................................TAT-----------------------------------------------------------------------CGAC----GTT----CATACGGACAGA............................................................22180.39700000000016000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGACTCGGCTATT..16200.35700000000007000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TGGACAG----------------ACGGACA------TGGCTAGATCGAC...........2730.33100000010000000000
...........................................................................................................................................................................................................................................GTTTCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----...............................................................................1730.33100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TGGACAG----------------ACGGACA------TGGCTAGATC..............2430.33100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TGGACAG----------------ACGGACA------TGGCTAGATCGT............2630.33100000000000010000
............................................................................................................................................................................................................................................TTTCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----........................................................................1930.33100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTAGATCGACTCGGCTATT..22200.30600000000000042000
...........................................................................................................................................................................................................................................................................................................................................................................................................G----------------ACGGACA------TGGCTAGA................16200.30600000006000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................G----------------ACGGACA------TGGCTAGATCGACTCGT.......25200.25500000041000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACA------TGGCTAGATCGACTCGGCTA....27200.25500000010000040000
.........................................................................................................................................................................................................................................................................................................................................................................................................CAG----------------ACGGACA------TGGCTAGATCGACT..........24200.25500000000000050000
......................................................................................................................................................................................................................................................................................................................................................................................................GGACAG----------------ACGGACA------TGGCTAGATCGAC...........26200.25500000000000050000
...................................................................................................................................................................................................................................................................................................................................................................................TT----CATACGGACAGATGGACAG----------------ACGGT................................2650.20100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................ATACGGACAGATGGACAG----------------ACGG.................................2250.20100000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................GTT----CATACGGACAGATGGACAG----------------ACGG.................................2650.20100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................C----GTT----CATACGGACAGATGGACAG----------------ACGGA................................2850.20100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................TACGGACAGATGGACAG----------------ACGGAAC------........................2450.20100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTAGATCGACTCGGCTATTG.23200.20400000000002020000
..........................................................................................................................................................................................................................................................................................................................................................................................ATACGGACAGATGGACAG----------------ACGGA................................2350.20100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................CGAC----GTT----CATACGGACAGATGGACAG----------------.....................................2650.20100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................T----CATACGGACAGATGGACAG----------------ACG..................................2350.20100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................CGAC----GTT----CATACGGACAGATGGACAG----------------A....................................2750.20100000000000010000
................................................................................................................................................................................................................................................TGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----CATACGGA................................................................23110.18200000010010000000
...................................................................................................................................................................................................................................................................................................................................................................................................GATGGACAG----------------ACGGACA------TGG.....................1960.17100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................GGACAG----------------ACGGACA------TGGCTAGATCGACT..........27200.15300000002000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GACA------TGGCTAGATCGACTCGG.......21200.15300000002000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------TGGCTAGATCGACTCGG.......20200.15300000000000003000
.........................................................................................................................................................................................................................................................................................................................................................................................................CAG----------------ACGGACA------TGGCTAGATCGACTCGGCT.....29200.15300000003000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTAGATCGACTCGGCT.....19200.15300000000003000000
...........................................................................................................................................................................................................................................................................................................................................................................GAC----GTT----CATACGGACAGATGGACA......................................................2480.13100000000000001000
..............................................................................................................................................................................................T-------------------------------------------AGTTTCTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTA----A.......................................................................2380.13100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACA------TGGCTAGATCGACTCGGC......25200.10200000000000020000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTAGATCGACTCGG.......16200.10200000011000000000
........................................................................................................................................................................................................................................................................................................................................................................................................ACAG----------------ACGGACA------TGGCTAGATCGACT..........25200.10200000002000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AG----------------ACGGACA------TGGCTAGATCGACTCGG.......26200.10200000000000020000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGGACA------TGGCTAGATCG.............17200.10200000000020000000
...........................................................................................................................................................................................................................................................................................................................................................................................................G----------------ACGGACA------TGGCTAGATCGACTCGGCTA....28200.10200000011000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................A------TGGCTAGATCGACTCGGCTAT...22200.10200000000002000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGGACA------TGGCTAGATCGACTCGGCTAT...27200.10200000020000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGATCGACTCGGCTATTT.21200.10200000000000002000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTAGATCGACTCGGCTAT...21200.10200000000000020000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTAGATCGACTCGGCTA....20200.10200000000002000000
........................................................................................................................................................................................................................................................................................................................................................................................................ACAG----------------ACGGACA------TGGCTAGATCGAC...........24200.10200000000000020000
........................................................................................................................................................................................................................................................................................................................................................................................................ACAG----------------ACGGACA------TGGCT...................16200.10200000000002000000
................................................................................................................................................................................................................................................TGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----CATACGGAC...............................................................24110.09100000001000000000
.................................................................................................................................................................................................................................................GAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----CATACGG.................................................................21130.08110000000000000000
................................................................................................................................................................................................................................................TGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----CATACGGACAGG............................................................27130.08100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TGGACAG----------------ACGGACA------TGGCTAGATCGAAAA.........29150.07100000000100000000
...................................................................................................................................................................................................................................................G-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GTT----CAT.....................................................................15150.07100000000001000000
...............................................................................................................................................................................................................................................CTGAG-------------------------------A------------TAT-----------------------------------------------------------------------CGAC----GT.............................................................................15180.06100000000001000000
......................................................................................................................................................................TTAATCTCAACCTTCTAGCTTT.....................................................................................................................................................................................................................................................................22190.05100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGGACA------TGGCTAGATCGAC...........19200.05100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................G----------------ACGGACA------TGGCTAGATCGACTCGGCT.....27200.05100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGACA------TGGCTAGATCGACTCGG.......22200.05100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------TGGCTAGATCGACTCGGCT.....22200.05100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................ACAG----------------ACGGACA------TGGCTAGATCGACTCGG.......28200.05100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................A------TGGCTAGATCGACTCGGCTA....21200.05100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTAGATCGACTCGG.......17200.05100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................GGACAG----------------ACGGACA------TGGCTAGA................21200.05100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................ACAG----------------ACGGACA------TGGCTAGATCGACA..........25200.05100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................CAG----------------ACGGACA------TGGCTAGA................18200.05100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................ACAG----------------ACGGACA------TGGCTAGATCGACTCGGCT.....30200.05100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTAGATCGACTCGGT......18200.05100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................CGAC----GTT----CATACGGACA..............................................................17200.05100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACA------TGGCTAGATCGACTCGG.......24200.05100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AG----------------ACGGACA------TGGCTAGATCGA............21200.05100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGGACA------TGGCTAGATCGACTCG........22200.05100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GACAG----------------ACGGACA------TGGCTAGATCG.............23200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AG----------------ACGGACA------TGGCTAGATCGACT..........23200.05100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................G----------------ACGGACA------TGGCTAGATCGA............20200.05100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGATCGACTCGGC......15200.05100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GACAG----------------ACGGACA------TGGCTA..................18200.05100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................GGACAG----------------ACGGACA------TGGCTA..................19200.05100000000001000000
............................................................................................................................................................................TCAACCTTCTAGCTT......................................................................................................................................................................................................................................................................15200.05100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CAG----------------ACGGACA------TGGCTAGATCGACA..........24200.05100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................G----------------ACGGACA------TGGCTAGATCGACTCGG.......25200.05100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................ACAG----------------ACGGACA------TGGCTAGA................19200.05100000000001000000
droSec2
GTGGC----------------------------------------------------------------------------------------------------------------------C-----ACATGA--------GT-----------------------AAACACA--CCTGTAGCTTTTTT-------------------------------------------AGTTTTTGAT----------------------------------------------------------------------------------------------------------------------ATTC----TGA----CGTTCATACGGACGGGCAG----------------ACGGAAA------TGATCAGATCGACTCGGCTATTGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATCGACTCGGCTATTGT20200.0510100
droYak3
TTGTGGT-----------------------------------------------------------------------------GC-------------------------------------G-----TCTATGTCTCTGGAGTC--------GGTA-----TGCTTTATCTCAACTTTCTAGCTTTTGT-------------------------------------------AGATCCTGAG-------------------------------ATCTTA----GCGTTA-----------------------------------------------------------------------ATAC----GAA----CGAACAGACGGACGGACAG----------------AAGGACA------TGGCCAGATCGACTCGGCTATTGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................GACGGACGGACAG----------------AAGGACA------TGGC....................2450.20100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................G----------------AAGGACA------TGGCCAGATCGACTCGGC......2680.13100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................G----------------AAGGACA------TGGCCAGATCGACTCGGCTA....2880.13100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................GACGGACAG----------------AAGGACA------TGGCCAGATC..............26120.08101000000000
..................................................................................................................................CTATGTCTCTGGAGTC--------GGTA-----TGC...........................................................................................................................................................................................................................................................................................23140.07100010000000
......................................................................................................................................................................................AGCTTTTGT-------------------------------------------AGATCCTGAG-------------------------------..............................................................................................................................................................................19170.06100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CA------TGGCCAGATCGACTCGGCT.....21200.05100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................CGGACAG----------------AAGGACA------TGGCCAGG................22200.05101000000000
.......................................................................................................................................................................TTATCTCAACTTTCTAGCTTTTGC-------------------------------------------.......................................................................................................................................................................................................................24200.05100100000000
............................................................................................................................................................TA-----TGCTTTATCTCAACTTTCT...........................................................................................................................................................................................................................................................................21200.05100100000000
droEre2
GCTTA----------------------------------------------------------------------------------------------------------------------A-----TC-----------------------------------------TCCTTATTCTAGCTTTTGT---------------------------------AC-TA----TAGTTCCTGAG-------------------------------A------------TCGAGGCGTTCATACGGACAGACGGA--CAAAC-------GGAC------------------------------GGAC----GGA----CAAACGGACAGACGGACAAACGGACAGACGGGCTGACGGACAGACTGAT-GACAGTTCGACACGGCTATTGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................GGCGTTCATACGGACAGACG.........................................................................................................................................20200.0510000100

Generated: 05/16/2015 at 09:32 PM