ID:

dvi_7755

 Coordinate:

scaffold_12875:18437384-18437534 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.8 -7.4 -7.1 -7.0

Flybase annnotation

CDS [Dvir\GJ19994-cds]; exon [dvir_GLEANR_5458:3]; intron [Dvir\GJ19994-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-
mature
star
  1. dvi_7755  scaffold_12875:18437437-18437457 -
  2. scaffold_12963:20104529-20104549 -
  3. scaffold_12970:4694735-4694755 +
  4. scaffold_12970:9637274-9637294 -
  5. scaffold_13047:13981894-13981914 -
  6. scaffold_13049:6326915-6326935 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGAGCGATTGCAATTGTGTGGGTGCGGGCGTGGGGGCGGCTGCGAGTGCGGGTGCGGCCGCACTAATGATGGGCAGGGCGGCCAGACAAATGCACGCCGTTGAGGCAGAAGCAGGAACAACAACAACAACAGCAGCAGCAACAACACCCACAGCACCAGCTATAACAACAACAACACCAACAACACCAACAGCATCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACACGAACAACT
*******************************************************************************((.................((((..((.........................))..)))).......))******************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060672
9x160_females_carcasses_total
 M047
female body
 V116
male body		 SRR060681
Argx9_testes_total
 SRR060655
9x160_testes_total
 SRR060658
140_ovaries_total
 SRR060660
Argentina_ovaries_total
 SRR060679
140x9_testes_total
 SRR060689
160x9_testes_total
 SRR060661
160x9_0-2h_embryos_total
 V053
head
 V047
embryo
 SRR1106729
mixed whole adult body
 SRR060663
160_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 M061
embryo
 SRR060654
160x9_ovaries_total
 SRR060671
9x160_males_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060683
160_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
..................TGGGTGCGGGCGTGGGGGCG..................................................................................................................................................................................................................... 20 0 1 3.00 3 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................GTGGGTGCGGGCGTGGGGGCGGCTG................................................................................................................................................................................................................. 25 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................GTGGGTGCGGGCGTGGGGGCGG.................................................................................................................................................................................................................... 22 0 1 2.00 2 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................GTGGGTGCGGGCGTGGGGGCG..................................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GGCCAGACAAATGCACGCCGTT...................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................TGTGGGTGCGGGCGTGGGCGCG..................................................................................................................................................................................................................... 22 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................CGCCGTTTAGTCAGAAGCA.......................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TTGAGGCAGGAGCAGGAAAAA................................................................................................................................... 21 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AACAGCAGCAGCAACAACACC....................................................................................................... 21 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AACAGCATCAACAGCAGCAGCAG......................................... 23 0 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................AGCATCAACAGCAGCAGCAGCAGC..................................... 24 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CGGGCATGCGGGCGGCTGC................................................................................................................................................................................................................ 19 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AACAGCATCAACAGCAGCAGC........................................... 21 0 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......ATTGCGATCGTGTGGGTTC.................................................................................................................................................................................................................................. 19 3 19 0.11 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................CAGCATCAACAGCAGCAGCA.......................................... 20 0 20 0.10 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................GCGGGCGTGGGGTCTGCTGG................................................................................................................................................................................................................ 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................ACAGCATCAACAGCAGCAG............................................ 19 0 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AACAGCATCAACAGCAGCA............................................. 19 0 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................GTTGTGGGTGTGGGGGCGGCT.................................................................................................................................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AGCAGCAGCAACAACAACAACA......... 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CATCAACAGCAGCAGCAGC........................................ 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................ACAACAAGACCAACAGCATCAAC.................................................... 23 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......ATTGCGATCGTGTGGGT.................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AACAGCAGCAGCAGCAGCAGCA................................. 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATCAACAGCAGCAGCAGCAGCAGCAGC............................... 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CATCAACAGCAGCAGCAGCAGCAGCA................................. 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................GCATCAACAGCAGCAGCAG......................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................GGATCAACAGCAGCAGCAGC........................................ 20 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATCAACAGCAGCAGCGGCAGCAGCAGCA.............................. 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CAACAACACCCACAGCAGCAG............................................................................................ 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................ACAACAGCAGCAGCAACAACA......................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................TCAACAGCAGCAGCAGCAGCA.................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

TCTCGCTAACGTTAACACACCCACGCCCGCACCCCCGCCGACGCTCACGCCCACGCCGGCGTGATTACTACCCGTCCCGCCGGTCTGTTTACGTGCGGCAACTCCGTCTTCGTCCTTGTTGTTGTTGTTGTCGTCGTCGTTGTTGTGGGTGTCGTGGTCGATATTGTTGTTGTTGTGGTTGTTGTGGTTGTCGTAGTTGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTTGTTGTTGTTGTGCTTGTTGA
*******************************************************************************************************((.................((((..((.........................))..)))).......))******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060672
9x160_females_carcasses_total
 V053
head
 M027
male body		 SRR060659
Argentina_testes_total
 SRR060681
Argx9_testes_total
 SRR060689
160x9_testes_total
 SRR060667
160_females_carcasses_total
 M047
female body
 SRR060662
9x160_0-2h_embryos_total
 SRR060678
9x140_testes_total
 V116
male body
...........................................................................................CGTGCGGCAACTCCGTCTTCG........................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................CCGTCGTGATTGCTACCCGGC............................................................................................................................................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TCGTTGTTGTTGTTGTGCTTG.... 21 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................GGTTTCGTGGTCGATCTCGTTG.................................................................................. 22 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................GTTGTTGTTGTCGTCGTCGTT.............................................................................................................. 21 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................................GCCGTTGTTGTGGGTGACGGG............................................................................................... 21 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTGTGGTTGTTGTGGTTGT............................................................ 19 0 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................TGTGGTTGTTGTGGTTGT............................................................ 18 0 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................GTCGTTGTAGTGGGTGCGGTG............................................................................................... 21 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0
............................................TCGCGCGCACGCCGGCTTG............................................................................................................................................................................................ 19 3 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................GTTTCGTGGTCGATCTCGTTG.................................................................................. 21 3 19 0.05 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................TTGTTGTCGTCGTCGTTGTTG.......................................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGTTGTCGTCGTCGTCGTC...................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................GTTGTTGTTGTCGTCGTCGT............................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................TCGTCGTCGTTGTTGTTGTT........... 20 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................TCGTCGTTGCTGTGGGTA.................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................TCGTCGTCGTCGTTGTTG................ 18 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................TGTCGTCGTTGCTGTGGGT..................................................................................................... 19 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:18437334-18437584 - dvi_7755 AGAGCG----ATTGCAATTGTGTGGGTGCGGGCGTGGGG----------------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCT----------GCGAGTGCGGGTGCGG--------------CCGCACTAATGATGGGCAGGGCGGCCAGACAAAT------------------------------------------------------------------GCACGCCGTTGAGGCAGAAGCAGGAACAACA-----ACAA---------------CAA---CA---GC---AGCAG---------------------------------------CAACA----ACACCCAC-AGCACC---AGCT---------------------------------------------------------------ATAACA----------------------ACAACA---ACACCAACAACACCAACAGCA---TCAACAGCAGC------------AGCA------------GCAGCAGCAGCAGCAGCAGCAACAACAACAACACGAAC---------------------AACT
droMoj3 scaffold_6680:11147908-11148156 - GAG-CA----ATTGCGACATTGTGATTGTTGCCGCGCAA----------------CCGCAGA-------------------------------------------------------------------------------------------------------------------------------------------------------CCACGAGCGCCAACAACAACAACAATGACACTGTTA------CA----C-----A----GGC-------------------------------------------------CAGCCATGTCAGC----CATGT------------------------------------------------------------------G---GCAGCTGTGGC---------------------------GCATGCACAGCACCAACA------GCAACAGC---------------AGCAGCA---ACAACA----------------------ACAGC-AG---CAGCAACAACAGCAGCAGCAACAA---------------------------------------------------------CAACA-------------------------------GCAGCAG---CAGCAACAACAACAGC---------------------------------AGCAGCAGCAACAACAACAACAGCAGCAGCAGC---------------------AGCA
droGri2 scaffold_15245:4551947-4552161 - AAAGCG----ATTGCAACTGTGTTGGTGCGGGGGCGGTG----------------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGGG----------GCGGGGGCGGTGGCGT--------------CCAATCTAAAGATGGGCAGGGCGGCCAGACAAATTCAAAC------------------------------------------------------------GCACGCCGTGGAG-----------------------------GCAGAA------------ATA---AC---AACAACACC---------AACACCA---ACAACA----------------------ACAGC-TA------------------------------------------------------------------------------------CAACAACAACAGCT-------------------------ACA---------ACAACAACAGC---------------------------------TACAACAACAGCTACAACAACAGCCATAGCAAC---------------------AACT
droWil2 scf2_1100000004852:682170-682433 - GGAGCG----AGAGCTGCTGAGGTGGGAAAGGGCCC--AACAGGAGGAGGAGCGGCTGAAACGGGCAAG-----AGAACGGCTG-------------GCGATGGCAAT--------------------------------G---------------------------------------------------------------CTGCAA---------------------------------------CAACAACAGCAGCAACA------------------------------------------------ATT------------GCAGCATC---------AGCAAC---------AGC------------------AACAACGA--------------------------------------------------------------------------ATGCAA---CA---GCAACAGC---------------AGCAACA---ATT---GCA-------------------GCAAC-AG---T---AGCA------------------------AC---------------------------------------AATTGCAGCAACAGCAACA----------GC------------AGCAACAA---T------GGCAGCAAC------------AGCA------------ACAGCAGCAACAATTGCAGCAACAGCAACAGCAGCAAC---------------------AATT
dp5 2:21904637-21904880 + TCAGCA----GTGG-AGCGGCGCT--------------------------------TG---------------------------------------GCGGGGGCGGAGGAGCG-----GCCGC----CACGGCACC-CAGCAGCAGTGCA------GCGCGACGCGGAGCCAGGC--------------------------AG----AGTGCGCAGCAGCAACAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CA-----------------------------------ACAGC---AGC---AACAACAGCAGCAGCA---ACA---ACA---------------------------------------------------------------------------------------------------------------------------------GCAGCA---------------GCATCATCA---AGCGCAGCAGCAACAACAACAGCAGCAGAGGCAGGTGTACCAGCAGCAGCAGCAACAGTTGCGTCAGCAGCACCAAC---------------------AAAT
droPer2 scaffold_2:5826710-5826942 - ACAGCC----ACAGCCACTGC-------------------------------------------------------------------------------CACTGCAACAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGACGTCGACAAGTGCTGATA---AAATGCAAATGCAAATGAA------------GCAACGCC---------AGCAGA---------AGC---------------------AGC------------------------------------------------AGCAGCAACAGC-----AGC---------AGAAA---CAGCAGCAGC---AGC---AAC------A------------------GCAGCA-------------ACAAC-AGCAAC---AGCA------------------------GC-------------------------------------------------------------AACAGCAGCAACAGCAACAGCAGCAACAG---CAACAGCAGCAGCAGC---------------------------------AACAACAGCAACAGCAACAACAGCAACAGCAGC---------------------AGCA
droAna3 scaffold_13337:8965783-8965996 - TGGGT------------------------------------------------------------------------------------------GCTGCGAGCGGTAGCAGTGTGGGTG--AATCGCTGT---------G---------------------------------------------------------GAGCAGTAGCGAAGCGCAGCAGTTCCAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CAACAGC-----AGCAGGCCCAACA------------GCAGCAG---------------------------CA---ACAGCAACACCACCA----CCACCAGC-AACAAC---AACA------------------------GC------------------------------------------------TCCA----------GCAGCAGC------------A---GCAGCAACA---GGCGCAGCAGC---------------------------------AGCAGCAACAGCAGCACCATCACCACCACCAGC---------------------AACA
droBip1 scf7180000396360:488638-488877 - TATGTT----GGCG------------------------------------------TGGTC--------CTGGCAACATC-----------------------------------------------------------------------------------------GTCAGCAAGTAGAAATGCGACGGCTGCAGCAGCAGCAGCAA---------------------------------------CAGCAGTATCAGCAGCT---------------------------------------------------------------------------------GCAGCAGCATCAACAAC------------------TGCAGCAG-----------------------------------------------------------------------CATCAACA---------ACAGCAAC---------------AGCATCA---ACAACA----------------------GCAGC-AG---CATCAACAACAGCAGCATCAACAA---------------------------------------------------------CAGCA----------------ACA---------GCATCAGC------------AACTGCAGC------------AGCA------------TCAGCAACAGCAACAGCATCAACATCAGCAGCATCAAC---------------------AACA
droKik1 scf7180000302344:1389489-1389728 + AAAAAG----ACGGCTACAAC--AG---------------------------------------------------------------------------------CAGCAACGG--------------------------------------------------------------------------------------------------------------------------------------------------------T----GGCAACAGCTACAACTGCAGCTGCAG--------------TGGTA------------TAAACAGCCACAGAAACTGCAACAGTTAC------------------------------------------------------------------------------AA--------------CAACAGGTACAACAACTACACCA---GC---AGCAGC------------------------------------TCCACCA----ACTCATAC-AGCAGC---AGCT---------------------------------------------------------------ACAAAAACTGCAACAACAAGTGCT----ACAACA---------ACTGCAACAG---GTGCAGCTAC---------------------A------------GCAGCAACTACAGCAGCAGCTACAAGAACTGCATCAAC---------------------AACT
droFic1 scf7180000454104:1161787-1162019 + AGAGCG----GCAGCAG--------------------------------------------AGCGA---------------------------CGGAGCGGCGACGGAGCAGCGTTGATGCCGTTGCAGCT---------GCTGCTGCGCA------------------GC-------------------------------------------CAGCGACGACAGCAGCAACAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCAGC-----AAC---------ACGAG---CAGCAGCAGC---AA------------------------CA---ACAGCAACA-------------G---A-AACAAG---ACAA---------------------------------------------------------------------GCAGCAACGCCAGCAGCA-GC---AACA---------GCAGCAGCAA---CAGCAGCAGC---------------------A------------GCAGCGGCAGCAGCAGCAGCAGCTAAGGCAGCAGCAAC---------------------AATC
droEle1 scf7180000491047:337977-338215 - ATTGCAAACGGTGGATACGGT--GA---------AAG----TGGAGGAGGTTCAGCTGCAGA---------------------------TAATGAACG------------AACGGAAGCA--GCGGCCTAG---------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATATAA------------GCCACGGC---------TGCAAT---------ATC------------------AGC---------------------------------------------------AGCAGCA--------------ATTGCAACCACTGCTGCA---GC---AGCAGC---AAC---------------------A---GCAGCA-------------GCAAG-AGCAAC---AGCA------------------------AC-------------------------------------------------------------AACAGCAGCA---------------AGAGCAACA---GCAACAACAGC------------AGCA------------ACAGCAGCAGCAGCAGCAACAACAGCAGCAACAACAAC---------------------AGC-
droRho1 scf7180000777865:82606-82858 + AG--CA----ATTGCAAC----------------------------------------------------------------------------------------------------------CACATTT---------G---------------------------------------------------------CAGCAGCAACAA-------CAGTTG--------------------------------------------CAGCA----------------------G--------------------------------------CAAC---------AACAGT---------TGC-----------------------------------------------------------------------------------------------AGCAGCAACAACTAGA---GC---AGCAGC------------------------------------AACAACA----ACAACAGC-AG------------------------CAGCAGCAACAACTACAGCAGCAGCAACAACAACTACAGCAGCAGCAGCAGCAAAAACTGCAGCAACAACCAGT----GCAACA---------GCAACAGCAA---GT---------GCAGC------------AACT------------CCATCAACCGCAACAGCAGCAGCAACA---------TGTGCTGCAAACGCAACAGCCACAACA
droBia1 scf7180000302428:2498189-2498422 + CGGGCG----TCGGCAC---------------------------------------TGGAG--------CGGGCAACTCGGCTGGCAGCCTGGGTGCAGCCAGTGGCAGCAGCGTGGGCG--ACTCCCTGT---------G---------------------------------------------------------GAGCAGCAGCGAGGCCCAGCAGTTCCAGCAGCAGCAGC--------------------------------------------------------------------------------------------------AAC---------------------------------------------------------------------------------------------------AA--------------CAGCAGGCCCAGCAACAGGCGCA---GC---AGCAGC------------------------------------ACCATCA----CCACCAGC-AA------------------------CAA---------------------------------------------------------CAGCA---GCAGC-TTCAGCAGCA---------------GCAGCAACA---GGCTCAGCAGC------------------------------------------AG------CAACAACAGCAGCAGC---------------------AGC-
droTak1 scf7180000414445:283343-283554 + GCAGCC----GCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTC-AGGGGCC--G------------------------------------------T----CTCAGCAACATCAGCAGCAGCAGCAG-----------CAAAATAT------------GCATCATC---------ACCAAC---------AGC------------------AGCAGCAG---------------------------------------------------CA-----CCAA---------------CA---------ACAGCAGC---------------AGCAGCATATGCAACA---GCAGCA--------------------G---CAACACCAACAGCAGCAGCAACAA---------------------------------------------------------CA-------------------------------------TCAACAGCA---GCAGCAGCAAC------------ATCA------------ACAGCAGCAGCAGCAGCATCAACAACAGCAGCAGCAAC---------------------AAC-
droEug1 scf7180000409462:3312801-3313042 + AGCGAA----TATGCTTGTGC--GG------------------------------CAGCAAACAGT---------------------------GGGTGCAACAACTAT---GCG-----GCCAC----TATGGCACAACAATGACAGCATTGGGCAAACATATCACGCGATCAATT---------------------------------------TGTCAAACAAGCTGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------CATC---------------AGCTGCT---ACAATA----------------------GATGC-TG---CAGCACCAATAGCAGCAGCAACAT---------------------------------------------------------CGCCA---GTAAA-ATC------------------AGCAATAA---GA----GCACAGCAGC---------------------------------AGCAGCAGCAGCAGCAACAGCAACAACAACAAC---------------------AGTT
dm3 chr3L:3394242-3394511 + GTGACT----GCAACTG---TGTGG--------------------------------------------------------------------GTTAGTCCCGCGTTCTCAGTGTGAGTG--TATATATGT---------GCAGCAACACG------------------ATCAATA---------------------------------------AACGAGACAAGCAGCAACAAC-----------------AACACCAGCAAGC------------------------------------------------------------------------------ACTACACCAATAACAACAAC------------------GACAACAA---------CAGTAAA------GAACAC-------------------------------------------------------CA---AC---AACATT------------GACAACC---ACA---CCA----------------------AC-AAC------AATC------------------------------------------------------------ACAACAAACACTACACCAACAATAGCA----------------------------A---CA---ACACCAATATC---------------------------------AACAACAACAGAAACAACAACAGAAACAACAAC-------AACA-TACACGCACAACG
droSim2 3l:3008638-3008871 + GGGT--------GGCAG-----------------------------------------------------------------------CCTGGGAGCCGCCAGTGGAAGCAGCGTGGGCG--ACTCCCTGT---------G---------------------------------------------------------GAGTAGCAGCGAGGCCCAGCAGTTCCAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------CAGCAGGCCCAGCAACAAGCACA---GC---AGCAGC------------------------------------ACCATCA----CCACCAGC-AGCAGC---AGCA------------------------GT-------------------------------------------------------------TACAGCAGCA---------------ACAACAACA---GGCGCAGCAGCAGCAACAACAGCAGCAGC---------------ACCATCACCACCACCATCAGCAGCAGCAGAGTG---------------------GACA
droSec2 scaffold_0:18971658-18971894 + AG--CA----GTTGCAACTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGCAGCAGTTGC------------------------------------------------T------------GCAGCGTC---------GCCGCC---------TGC------------------AACAGCAACTGCTGCAACAG---GGCGTGCCCTCGCCTCC--GGC---------AA--------------CAGCAAATG---------------------------------------------------CA---ACAACAACAACGGCAGGTCTCACCTGCAATCAAC---AGTA------------------------TT-------------------------------------------------------------TGCGACAGCA---------------GCAGCAACA---ACTGCAGCAGCAACAGCAGCAGCAGCAGCAATATGTGG----ACCACAACAGCAACAATGACAATGACTATTTGAAC---------------------AACT
droYak3 2L:3403316-3403548 + GCAAAA----TGCG------------------------------------------TGGCA--------TGAACAATATGATTCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCA----------------------G--------------------------------------CAAC---------AACGGA---------AGCTGCAACATAAATAAATACCA-TTCAG---------CACAAAT------GGACAT--------CAGCAGCAGTAGCAACA-----GCAG---------------CA---------ACAGCAGC---------------A--------------------------------------------G---CAGCAACCGCAGCAGCAGCAGCA------------------------------------------------ACAGCAGCAACA-------------------------GCAGCAGCAGCAGCAGCAACA---GCAGCAGAAGC------------AGCA------------ACAGCATCAGCAGCAGCATCCCCCGCAGCAACACAAAA---------------------AGC-
droEre2 scaffold_4784:3159547-3159808 + CGGGAG----TGGGCAC---------------------------------------TGGAG--------CGGGCAACTCGGCTGGAAGCCTTGGGGCTGCCAGTGGAAGCAGCGTGGGCG--ACTCCCTGT---------G---------------------------------------------------------GAGCAGCAGCGAGGCCCAGCAGTTCCAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------CAGCAGGCCCAGCAACAGGCACA---GC---AGCAGC------------------------------------ACCATCA----CCACCAAC-AGCAGC---AGCA------------------------GT-------------------------------------------------------------TGCAGCAGCA---------------ACAGCAACA---GGCGCAGCAACAGCAACAACAGCAGCAGC---------------ATCATCACCACCACCATCAGCAGCAGCAGGGCG---------------------GACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AGAGCG----ATTGCAATTGTGTGGGTGCGGGCGTGGGG----------------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCT----------GCGAGTGCGGGTGCGG--------------CCGCACTAATGATGGGCAGGGCGGCCAGACAAAT------------------------------------------------------------------GCACGCCGTTGAGGCAGAAGCAGGAACAACA-----ACAA---------------CAA---CA---GC---AGCAG---------------------------------------CAACA----ACACCCAC-AGCACC---AGCT---------------------------------------------------------------ATAACA----------------------ACAACA---ACACCAACAACACCAACAGCA---TCAACAGCAGC------------AGCA------------GCAGCAGCAGCAGCAGCAGCAACAACAACAACACGAAC---------------------AACTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................TGGGTGCGGGCGTGGGG----------------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003000000000010000000000010000000010000000000000000000000000000000
.....................GTGGGTGCGGGCGTGGGG----------------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCT----------G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000000000000000000000010000000000000000000000000000000000000010
.....................GTGGGTGCGGGCGTGGGG----------------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002001000000000000000000000000000000000000100000000000000000000000
.....................GTGGGTGCGGGCGTGGGG----------------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000001001000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................GGCCAGACAAAT------------------------------------------------------------------GCACGCCGTT..........................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---CA---GC---AGCAG---------------------------------------CAACA----ACACC...................................................................................................................................................................................................................................................2160.171001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA---TCAACAGCAGC------------AGCA------------G..............................................................2370.141000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---TCAACAGCAGC------------AGCA------------GCAGC..........................................................2470.141001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA---TCAACAGCAGC------------AGC............................................................................2190.111000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---TCAACAGCAGC------------AGCA------------...............................................................20200.102000000000000000000000000000000000001000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCA---TCAACAGCAGC------------AG.............................................................................19120.081000000000000010000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA---TCAACAGCAGC------------A..............................................................................19160.061000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACAACAACA..............................22200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---TCAACAGCAGC------------AGCA------------GC.............................................................19200.051000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGC------------AGCA------------GCAGCAGCA......................................................22200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---TCAACAGCAGC------------AGCA------------GCAGCAGCAGC....................................................27200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---TCAACAGCAGC------------AGCA------------GCAGCAGCA......................................................26200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---TCAACAGCAGC------------AGCA------------G..............................................................19200.051000000000000000000000000000000000100000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------CAA---CA---GC---AGCAG---------------------------------------CAACA----ACA.....................................................................................................................................................................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAGCAGC------------AGCA------------GCAGCA.........................................................21200.051000010000000000000000000000000000000000000000000000000000000000
droMoj3
GAG-CA----ATTGCGACATTGTGATTGTTGCCGCGCAA----------------CCGCAGA-------------------------------------------------------------------------------------------------------------------------------------------------------CCACGAGCGCCAACAACAACAACAATGACACTGTTA------CA----C-----A----GGC-------------------------------------------------CAGCCATGTCAGC----CATGT------------------------------------------------------------------G---GCAGCTGTGGC---------------------------GCATGCACAGCACCAACA------GCAACAGC---------------AGCAGCA---ACAACA----------------------ACAGC-AG---CAGCAACAACAGCAGCAGCAACAA---------------------------------------------------------CAACA-------------------------------GCAGCAG---CAGCAACAACAACAGC---------------------------------AGCAGCAGCAACAACAACAACAGCAGCAGCAGC---------------------AGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................................................................................................................................CAGC----CATGT------------------------------------------------------------------G---GCAGCTGTGGC---------------------------GCATGCAC..................................................................................................................................................................................................................................................................................................................................2911.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCAACA------GCAACAGC---------------AGCAGCA---ACA..............................................................................................................................................................................................................................................................................2720.501100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACA----------------------ACAGC-AG---CAGCAAC...................................................................................................................................................................................................................................20200.102200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------GCAACAGC---------------AGCAGCA---AC...............................................................................................................................................................................................................................................................................19200.102000020
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------GCAACAGC---------------AGCAGCA---.................................................................................................................................................................................................................................................................................20200.051000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG---CAGCAACAACAACAGC---------------------------------A.........................................................22200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACAACAACAGC..................................21200.051000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------------AGCAGCA---ACAACA----------------------ACAGC-AG---CA........................................................................................................................................................................................................................................25200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA----------------------ACAGC-AG---CAGCAACAACAGC.............................................................................................................................................................................................................................24200.051000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-------------------------------GCAGCAG---CAGCAACAACAACAGC---------------------------------..........................................................27200.051000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGC---------------AGCAGCA---ACAACA----------------------ACA..................................................................................................................................................................................................................................................22200.051010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGC---------------AGCAGCA---ACAACA----------------------ACA..................................................................................................................................................................................................................................................21200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGC---------------AGCAGCA---ACAACA----------------------A....................................................................................................................................................................................................................................................21200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAACAA---------------------------------------------------------CAAC.....................................................................................................................................................20200.051000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC-AG---CAGCAACAACAGCAGCA.........................................................................................................................................................................................................................23200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------------------------------AGCAGCAGCAACAACAACAACAGCA.................................28200.051100000
droGri2
AAAGCG----ATTGCAACTGTGTTGGTGCGGGGGCGGTG----------------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGGG----------GCGGGGGCGGTGGCGT--------------CCAATCTAAAGATGGGCAGGGCGGCCAGACAAATTCAAAC------------------------------------------------------------GCACGCCGTGGAG-----------------------------GCAGAA------------ATA---AC---AACAACACC---------AACACCA---ACAACA----------------------ACAGC-TA------------------------------------------------------------------------------------CAACAACAACAGCT-------------------------ACA---------ACAACAACAGC---------------------------------TACAACAACAGCTACAACAACAGCCATAGCAAC---------------------AACTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................................................................................................................................................................................................................................................................................................GATGGGCAGGGCGGCCAGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCT-------------------------ACA---------ACAACAACA.............................................................................................19200.05110
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------ACAGC-TA------------------------------------------------------------------------------------CAACAACAACA..............................................................................................................................................19200.05110
droWil2
GGAGCG----AGAGCTGCTGAGGTGGGAAAGGGCCC--AACAGGAGGAGGAGCGGCTGAAACGGGCAAG-----AGAACGGCTG-------------GCGATGGCAAT--------------------------------G---------------------------------------------------------------CTGCAA---------------------------------------CAACAACAGCAGCAACA------------------------------------------------ATT------------GCAGCATC---------AGCAAC---------AGC------------------AACAACGA--------------------------------------------------------------------------ATGCAA---CA---GCAACAGC---------------AGCAACA---ATT---GCA-------------------GCAAC-AG---T---AGCA------------------------AC---------------------------------------AATTGCAGCAACAGCAACA----------GC------------AGCAACAA---T------GGCAGCAAC------------AGCA------------ACAGCAGCAACAATTGCAGCAACAGCAACAGCAGCAAC---------------------AATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................ACGGGCAAG-----AGAACGGCTG-------------GCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23158.331250125000
............................................................ACGGGCAAG-----AGAACGGCTG-------------GCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22155.2779075220
............................................................ACGGGCAAG-----AGAACGGCTG-------------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20154.9374068240
............................................................ACGGGCAAG-----AGAACGGCTG-------------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21152.6039036210
............................................................ACGGGCAAG-----AGAACGGCTG-------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19151.6024020040
............................................................ACGGGCAAG-----AGAACGGCTG-------------GCGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25151.3320117020
............................................................ACGGGCAAG-----AGAACGGCTG-------------GCGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24151.1317015020
............................................................ACGGGCAAG-----AGAACGGCTG-------------GCGATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26151.0716016000
.............................................................CGGGCAAG-----AGAACGGCTG-------------GCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22150.8713013000
.............................................................CGGGCAAG-----AGAACGGCTG-------------GCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.8012012000
............................................................ACGGGCAAG-----AGAACGGCTG-------------GCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.731108030
............................................................ACGGGCAAG-----AGAACGGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18150.671007030
..................................CC--AACAGGAGGAGGAGCGGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50101000
.................................CCC--AACAGGAGGAGGAGCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50101000
.............................................................CGGGCAAG-----AGAACGGCTG-------------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19150.47707000
...............................................................GGCAAG-----AGAACGGCTG-------------GCGATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.40606000
...........................AAAGGGCCC--AACAGGAGGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22130.31404000
.............................................................CGGGCAAG-----AGAACGGCTG-------------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.27404000
.................................................................CAAG-----AGAACGGCTG-------------GCGATGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22150.20303000
..............................................................GGGCAAG-----AGAACGGCTG-------------GCGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.20303000
...................GAGGTGGGAAAGGGCCC--AACAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23110.18202000
..................TGAGGTGGGAAAGGGCCC--AACAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24110.18200020
.......................TGGGAAAGGGCCC--AACAGGAGGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25120.17202000
...........................AAAGGGCCC--AACAGGAGGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23120.17202000
...........................AAAGGGCCC--AACAGGAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.15200020
...............................................................GGCAAG-----AGAACGGCTG-------------GCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19150.13202000
...............................................................GGCAAG-----AGAACGGCTG-------------GCGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22150.13202000
.............................................................CGGGCAAG-----AGAACGGCTG-------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18150.13202000
.................................................................CAAG-----AGAACGGCTG-------------GCGATGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.13202000
.........................................................GAAACGGGCAAG-----AGAACGGCTG-------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22150.13202000
............................................................ACGGGCAAG-----AGAACGGCTG-------------GCGATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25150.13202000
...........................................................................................................................................................................................................................................................ACAACAGCAGCAACA------------------------------------------------ATT------------GCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2280.13101000
..AGCG----AGAGCTGCTGAGGTGGGAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2590.11101000
.............................................................................................................................................................................................................TGCAA---------------------------------------CAACAACAGCAGCAACA------------------------------------------------ATT------------GCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2890.11100010
.GAGCG----AGAGCTGCTGAGGTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.11101000
..AGCG----AGAGCTGCTGAGGTGGGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2590.11101000
.GAGCG----AGAGCTGCTGAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18100.10101000
....................AGGTGGGAAAGGGCCC--AACAGGAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26110.09100100
...................GAGGTGGGAAAGGGCCC--AACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23110.09100010
....................AGGTGGGAAAGGGCCC--AACAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.09101000
..................TGAGGTGGGAAAGGGCCC--AACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.09101000
..................TGAGGTGGGAAAGGGCCC--AACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23110.09101000
..................TGAGGTGGGAAAGGGCCC--AACAGGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27110.09100010
...........................AAAGGGCCC--AACAGGAGGAGGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24120.08101000
..............................GGGCCC--AACAGGAGGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20120.08101000
...........................AAAGGGCCC--AACAGGAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20130.08101000
.............................AGGGCCC--AACAGGAGGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.08101000
.........................................................GAAACGGGCAAG-----AGAACGGCTG-------------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.07101000
...............................................................GGCAAG-----AGAACGGCTG-------------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18150.07101000
..........................................................AAACGGGCAAG-----AGAACGGCTG-------------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.07101000
............................................................ACGGGCAAG-----AGAACGGCTG-------------GCGATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25150.07101000
..........................................................AAACGGGCAAG-----AGAACGGCTG-------------GCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25150.07101000
............................................................ACGGGCAAG-----AGAACGGCTT-------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19150.07101000
.................................................................CAAG-----AGAACGGCTG-------------GCGATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.07101000
..........................................................AAACGGGCAAG-----AGAACGGCTG-------------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22150.07101000
................................................................GCAAG-----AGAACGGCTG-------------GCGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.07101000
..................................................................AAG-----AGAACGGCTG-------------GCGATGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22150.07100100
.........................................................GAAACGGGCAAG-----AGAACGGCTG-------------GCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26150.07101000
...................................................................AG-----AGAACGGCTG-------------GCGATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19150.07100010
............................................................ACGGGCAAG-----AGAACGGCTG-------------GCGATGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27150.07101000
.............................................................CGGGCAAG-----AGAACGGCTG-------------GCGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24150.07101000
............................................................ACGGGCAAG-----AGAACGGCTG-------------GCGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24150.07101000
...............................................................GGCAAG-----AGAACGGCTG-------------GCGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.07101000
.................................................................CAAG-----AGAACGGCTG-------------GCGATGGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24150.07100100
.............................................................CGGGCAAG-----AGAACGGCTG-------------GCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.07101000
................................................................GCAAG-----AGAACGGCTG-------------GCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18150.07101000
.............................................................CGGGCAAG-----AGAACGGCTG-------------GCGATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25150.07101000
.............................................................CGGGCAAG-----AGAACGGCTG-------------GCGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.07101000
................................................................GCAAG-----AGAACGGCTG-------------GCGATGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.07101000
...................................................................AG-----AGAACGGCTG-------------GCGATGGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22150.07101000
..............................................................GGGCAAG-----AGAACGGCTG-------------GCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.07101000
..............................................................GGGCAAG-----AGAACGGCTG-------------GCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.07101000
................................................................GCAAG-----AGAACGGCTG-------------GCGATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22150.07101000
..........................................................AAACGGGCAAG-----AGAACGGCTG-------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.07101000
............................................................ACGGGCAAG-----AGAACGGCTG-------------TA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.07100010
............................................................ACGGGCAAG-----AGAACGGCTG-------------GCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.07101000
................................................................GCAAG-----AGAACGGCTG-------------GCGATGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24150.07101000
..........................................................................................................................................................................................................................................................AACAACAGCAGCAACA------------------------------------------------ATT------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.06101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC------------AGCA------------ACAGCAGCAACAATT................................................25160.06100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAGCAGCAAC---------------------AATT25160.06100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAACA----------GC------------A.....................................................................................................................18200.05100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACA----------GC------------AGCAACAA---T------GGCAG...............................................................................................23200.05101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACA----------GC------------AGCAACAA---T------GG..................................................................................................24200.05100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC------------AGCA------------ACAGCAGCAACA...................................................20200.05100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------------ACAGCAGCAACAATTG...............................................20200.05101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAGCAGCA...........................19200.05101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACA----------GC------------AGCAACA...............................................................................................................20200.05100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACA----------GC------------AGCA..................................................................................................................19200.05101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GCAACAGC---------------AGCAACA---ATT---G..........................................................................................................................................................................................................................................................................20200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAGCAAC---------------------A...20200.05100010
dp5
TCAGCA----GTGG-AGCGGCGCT--------------------------------TG---------------------------------------GCGGGGGCGGAGGAGCG-----GCCGC----CACGGCACC-CAGCAGCAGTGCA------GCGCGACGCGGAGCCAGGC--------------------------AG----AGTGCGCAGCAGCAACAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CA-----------------------------------ACAGC---AGC---AACAACAGCAGCAGCA---ACA---ACA---------------------------------------------------------------------------------------------------------------------------------GCAGCA---------------GCATCATCA---AGCGCAGCAGCAACAACAACAGCAGCAGAGGCAGGTGTACCAGCAGCAGCAGCAACAGTTGCGTCAGCAGCACCAAC---------------------AAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................A------GCGCGACGCGGAGCCAGGC--------------------------AG----AGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000002
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAGCAGCAGCAGCAACAGTT..........................................2412.0020200000000
.....................................................................................................................................................................CGGAGCCAGGC--------------------------AG----AGTGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGAGGCAGGTGTACC.............................................................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------GCATCATCA---AGCGCAGCA.............................................................................................2011.0010100000000
.........................................................................................................GGAGGAGCG-----GCCGC----CACGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................GTGCA------GCGCGACGCGGAGCCAGGC--------------------------AG----AG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGTTGCGTCAGCA.................................1911.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGTTGCGTCAGC..................................2011.0010100000000
......................................................................................................................................ACC-CAGCAGCAGTGCA------GCGCGACGCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------GCATCATCA---AGCGCAGCA.............................................................................................1911.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ACA---------------------------------------------------------------------------------------------------------------------------------GCAGCA---------------GCATCATCA---AGCGC.................................................................................................2511.0010000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---------------------------------------------------------------------------------------------------------------------------------GCAGCA---------------GCATCATCA---AGCGCT................................................................................................2411.0010000100000
.......................................................................................................................................................................................................................................GCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CA-----------------------------------ACAGC---AGC---AAC.................................................................................................................................................................................................................................................................................................20200.1020200000000
......................................................................................................................................................................................................................CAGCAGCAACAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A...........................................................................................................................................................................................................................................................................................................................................................23200.1020001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AGC---AACAACAGCAGCAGCA---.................................................................................................................................................................................................................................................................................21200.1020200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ACA---------------------------------------------------------------------------------------------------------------------------------GCAGCA---------------GCATCATC..........................................................................................................19110.0910000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---------------------------------------------------------------------------------------------------------------------------------GCAGCA---------------GCATCATCA---......................................................................................................18120.0810100000000
.............................................................................................................................................................................................................................AACAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CA-----------------------------------ACAGC---AGC---A...................................................................................................................................................................................................................................................................................................28140.0710100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-----------------------------------ACAGC---AGC---AACAACAGCAGCA.......................................................................................................................................................................................................................................................................................23200.0510000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AACAACAGCAGCAGCA---ACA---A..........................................................................................................................................................................................................................................................................22200.0510000100000
.........................................................................................................................................................................................................................................AGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CA-----------------------------------ACAGC---AGC---AACAACA.............................................................................................................................................................................................................................................................................................22200.0510100000000
...................................................................................................................................................................................................................................AGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CA-----------------------------------ACAGC---A.........................................................................................................................................................................................................................................................................................................19200.0510000100000
.....................................................................................................................................................................................................................GCAGCAGCAACAGCAGCAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
..................................................................................................................................................................................................................................CAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CA-----------------------------------ACAGC---AGC---....................................................................................................................................................................................................................................................................................................22200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---AACAACAGCAGCAGCA---.................................................................................................................................................................................................................................................................................19200.0510100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCA---ACA---ACA---------------------------------------------------------------------------------------------------------------------------------.......................................................................................................................................20200.0510000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGC---AGC---AACAACAGCAGC........................................................................................................................................................................................................................................................................................20200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................A---CA-----------------------------------ACAGC---AGC---AACAACAGC...........................................................................................................................................................................................................................................................................................20200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---AACAACAGCAGCAGCA---A................................................................................................................................................................................................................................................................................20200.0510000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCAGCAGCAGCAACAG............................................20200.0510100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAGCAG..........................................................................18200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAACAGT...........................................19200.0510000000010
...............................................................................................................................................................................................................................CAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CA-----------------------------------ACAGC---AG........................................................................................................................................................................................................................................................................................................24200.0510100000000
................................................................................................................................................................................................................................AGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CA-----------------------------------ACAGC---AGC---A...................................................................................................................................................................................................................................................................................................25200.0510100000000
................................................................................................................................................................................................................................AGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CA-----------------------------------ACAGC---AG........................................................................................................................................................................................................................................................................................................23200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCA---ACA---ACA---------------------------------------------------------------------------------------------------------------------------------GCAGC..................................................................................................................................22200.0510010000000
....................................................................................................................................................................................................................................GCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CA-----------------------------------ACAGC---AGC---A...................................................................................................................................................................................................................................................................................................21200.0510010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCA---ACA---ACA---------------------------------------------------------------------------------------------------------------------------------G......................................................................................................................................21200.0510000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCA---ACA---ACA---------------------------------------------------------------------------------------------------------------------------------GCAGCA---------------G.................................................................................................................24200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCA---ACA---ACA---------------------------------------------------------------------------------------------------------------------------------GCAGCA---------------..................................................................................................................23200.0510000010000
........................................................................................................................................................................................................................................CAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CA-----------------------------------ACAGC---AGC---AACAA...............................................................................................................................................................................................................................................................................................21200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---ACA---ACA---------------------------------------------------------------------------------------------------------------------------------GCAGCA---------------GCA...............................................................................................................19200.0510100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-----------------------------------ACAGC---AGC---AACAACAGC...........................................................................................................................................................................................................................................................................................19200.0510100000000
.....................................................................................................................................................................................................................................CAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CA-----------------------------------ACAGC---AGC---AACA................................................................................................................................................................................................................................................................................................23200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA---ACA---ACA---------------------------------------------------------------------------------------------------------------------------------GCAGCA---------------GC................................................................................................................24200.0510100000000
droPer2
ACAGCC----ACAGCCACTGC-------------------------------------------------------------------------------CACTGCAACAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGACGTCGACAAGTGCTGATA---AAATGCAAATGCAAATGAA------------GCAACGCC---------AGCAGA---------AGC---------------------AGC------------------------------------------------AGCAGCAACAGC-----AGC---------AGAAA---CAGCAGCAGC---AGC---AAC------A------------------GCAGCA-------------ACAAC-AGCAAC---AGCA------------------------GC-------------------------------------------------------------AACAGCAGCAACAGCAACAGCAGCAACAG---CAACAGCAGCAGCAGC---------------------------------AACAACAGCAACAGCAACAACAGCAACAGCAGC---------------------AGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAACAGCAGC---------------------AGC.21200.051001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAACAGCAGCAGCAGC---------------------------------AACA......................................................21200.051001000
droAna3
TGGGT------------------------------------------------------------------------------------------GCTGCGAGCGGTAGCAGTGTGGGTG--AATCGCTGT---------G---------------------------------------------------------GAGCAGTAGCGAAGCGCAGCAGTTCCAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CAACAGC-----AGCAGGCCCAACA------------GCAGCAG---------------------------CA---ACAGCAACACCACCA----CCACCAGC-AACAAC---AACA------------------------GC------------------------------------------------TCCA----------GCAGCAGC------------A---GCAGCAACA---GGCGCAGCAGC---------------------------------AGCAGCAACAGCAGCACCATCACCACCACCAGC---------------------AACASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................GTG--AATCGCTGT---------G---------------------------------------------------------GAGCAGTAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002100010
.................................................................................................TGCGAGCGGTAGCAGTGTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...........................................................................................................................................................................................................................................C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CAACAGC-----AGCAGGCCCAAC...............................................................................................................................................................................................................................................................................................................................2211.001010000
...........................................................................................................AGCAGTGTGGGTG--AATCGCTGT---------G---------------------------------------------------------GAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
....................................................................................................GAGCGGTAGCAGTGTGGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AACAAC---AACA------------------------GC------------------------------------------------TCCA----------GCAGCAGC------------A---GT................................................................................................................2811.001100000
....................................................................................................................GGTG--AATCGCTGT---------G---------------------------------------------------------GAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
.................................................................................................................................GT---------G---------------------------------------------------------GAGCAGTAGCGAAGCGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.................................................................................................................GTGGGTG--AATCGCTGT---------G---------------------------------------------------------GAGCAGTAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
............................................................................................................GCAGTGTGGGTG--AATCGCTGT---------G---------------------------------------------------------GAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
................................................................................................................................TGT---------G---------------------------------------------------------GAGCAGTAGCGAAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
...........................................................................................................................................................................................................GTAGCGAAGCGCAGCAGTTCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
................................................................................................................TGTGGGTG--AATCGCTGT---------G---------------------------------------------------------GAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.............................................................................................................................................................................................................................TCCAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CAAC...................................................................................................................................................................................................................................................................................................................................................2120.501010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCACCATCAC...................................2220.501010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCACCATCACCAC................................2220.501010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACCACCA----CCACCAGC-AACAAC---......................................................................................................................................................................................................................................2520.501010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC------------A---GCAGCAACA---GGCGCAGC..............................................................................................2420.501000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA---GGCGCAGCAGC---------------------------------A.........................................................2130.331010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACACCACCA----CCACCAG.................................................................................................................................................................................................................................................1930.331100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC------------A---GCAGCAACA---GGCGCA................................................................................................2140.251010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAGCACCAT......................................1840.251000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC------------A---GCAGCAACA---GGCG..................................................................................................2060.171000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---------------------------------AGCAGCAACAGCAGCACCA.......................................2360.171010000
......................................................................................................................................................................................................................................AGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CAACAGC-----AGCAGGC....................................................................................................................................................................................................................................................................................................................................2260.171010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA------------GCAGCAG---------------------------CA---ACAGCAACA..................................................................................................................................................................................................................................................................22200.153100002
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG---------------------------CA---ACAGCAACACCACCG----........................................................................................................................................................................................................................................................2270.141100000
.......................................................................................................................................................................................................................................GCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CAACAGC-----AGCAGG.....................................................................................................................................................................................................................................................................................................................................2080.131010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC------------A---GCAGCAACA---GGCG..................................................................................................1980.131100000
.........................................................................................................................................................................................................................................AGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CAACAGC-----AGCAGG.....................................................................................................................................................................................................................................................................................................................................1890.111000001
........................................................................................................................................................................................................................................CAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CAACAGC-----AGCAGG.....................................................................................................................................................................................................................................................................................................................................1990.111010000
...............................................................................................................................................................................................................................CAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---CAACAGC-----...........................................................................................................................................................................................................................................................................................................................................22200.102200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC------------A---GCAGCAACA---GGC...................................................................................................18190.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA------------GCAGCAG---------------------------CA---ACAGCAA....................................................................................................................................................................................................................................................................20200.051000001
droBip1
TATGTT----GGCG------------------------------------------TGGTC--------CTGGCAACATC-----------------------------------------------------------------------------------------GTCAGCAAGTAGAAATGCGACGGCTGCAGCAGCAGCAGCAA---------------------------------------CAGCAGTATCAGCAGCT---------------------------------------------------------------------------------GCAGCAGCATCAACAAC------------------TGCAGCAG-----------------------------------------------------------------------CATCAACA---------ACAGCAAC---------------AGCATCA---ACAACA----------------------GCAGC-AG---CATCAACAACAGCAGCATCAACAA---------------------------------------------------------CAGCA----------------ACA---------GCATCAGC------------AACTGCAGC------------AGCA------------TCAGCAACAGCAACAGCATCAACATCAGCAGCATCAAC---------------------AACASizeHit CountTotal NormTotal
No Reads
droKik1
AAAAAG----ACGGCTACAAC--AG---------------------------------------------------------------------------------CAGCAACGG--------------------------------------------------------------------------------------------------------------------------------------------------------T----GGCAACAGCTACAACTGCAGCTGCAG--------------TGGTA------------TAAACAGCCACAGAAACTGCAACAGTTAC------------------------------------------------------------------------------AA--------------CAACAGGTACAACAACTACACCA---GC---AGCAGC------------------------------------TCCACCA----ACTCATAC-AGCAGC---AGCT---------------------------------------------------------------ACAAAAACTGCAACAACAAGTGCT----ACAACA---------ACTGCAACAG---GTGCAGCTAC---------------------A------------GCAGCAACTACAGCAGCAGCTACAAGAACTGCATCAAC---------------------AACTSizeHit CountTotal NormTotal
No Reads
droFic1
AGAGCG----GCAGCAG--------------------------------------------AGCGA---------------------------CGGAGCGGCGACGGAGCAGCGTTGATGCCGTTGCAGCT---------GCTGCTGCGCA------------------GC-------------------------------------------CAGCGACGACAGCAGCAACAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCAGC-----AAC---------ACGAG---CAGCAGCAGC---AA------------------------CA---ACAGCAACA-------------G---A-AACAAG---ACAA---------------------------------------------------------------------GCAGCAACGCCAGCAGCA-GC---AACA---------GCAGCAGCAA---CAGCAGCAGC---------------------A------------GCAGCGGCAGCAGCAGCAGCAGCTAAGGCAGCAGCAAC---------------------AATCSizeHit CountTotal NormTotal
No Reads
droEle1
ATTGCAAACGGTGGATACGGT--GA---------AAG----TGGAGGAGGTTCAGCTGCAGA---------------------------TAATGAACG------------AACGGAAGCA--GCGGCCTAG---------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATATAA------------GCCACGGC---------TGCAAT---------ATC------------------AGC---------------------------------------------------AGCAGCA--------------ATTGCAACCACTGCTGCA---GC---AGCAGC---AAC---------------------A---GCAGCA-------------GCAAG-AGCAAC---AGCA------------------------AC-------------------------------------------------------------AACAGCAGCA---------------AGAGCAACA---GCAACAACAGC------------AGCA------------ACAGCAGCAGCAGCAGCAACAACAGCAGCAACAACAAC---------------------AGC-SizeHit CountTotal NormTotal
No Reads
droRho1
AG--CA----ATTGCAAC----------------------------------------------------------------------------------------------------------CACATTT---------G---------------------------------------------------------CAGCAGCAACAA-------CAGTTG--------------------------------------------CAGCA----------------------G--------------------------------------CAAC---------AACAGT---------TGC-----------------------------------------------------------------------------------------------AGCAGCAACAACTAGA---GC---AGCAGC------------------------------------AACAACA----ACAACAGC-AG------------------------CAGCAGCAACAACTACAGCAGCAGCAACAACAACTACAGCAGCAGCAGCAGCAAAAACTGCAGCAACAACCAGT----GCAACA---------GCAACAGCAA---GT---------GCAGC------------AACT------------CCATCAACCGCAACAGCAGCAGCAACA---------TGTGCTGCAAACGCAACAGCCACAACASizeHit CountTotal NormTotal
No Reads
droBia1
CGGGCG----TCGGCAC---------------------------------------TGGAG--------CGGGCAACTCGGCTGGCAGCCTGGGTGCAGCCAGTGGCAGCAGCGTGGGCG--ACTCCCTGT---------G---------------------------------------------------------GAGCAGCAGCGAGGCCCAGCAGTTCCAGCAGCAGCAGC--------------------------------------------------------------------------------------------------AAC---------------------------------------------------------------------------------------------------AA--------------CAGCAGGCCCAGCAACAGGCGCA---GC---AGCAGC------------------------------------ACCATCA----CCACCAGC-AA------------------------CAA---------------------------------------------------------CAGCA---GCAGC-TTCAGCAGCA---------------GCAGCAACA---GGCTCAGCAGC------------------------------------------AG------CAACAACAGCAGCAGC---------------------AGC-SizeHit CountTotal NormTotal
No Reads
droTak1
GCAGCC----GCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTC-AGGGGCC--G------------------------------------------T----CTCAGCAACATCAGCAGCAGCAGCAG-----------CAAAATAT------------GCATCATC---------ACCAAC---------AGC------------------AGCAGCAG---------------------------------------------------CA-----CCAA---------------CA---------ACAGCAGC---------------AGCAGCATATGCAACA---GCAGCA--------------------G---CAACACCAACAGCAGCAGCAACAA---------------------------------------------------------CA-------------------------------------TCAACAGCA---GCAGCAGCAAC------------ATCA------------ACAGCAGCAGCAGCAGCATCAACAACAGCAGCAGCAAC---------------------AAC-SizeHit CountTotal NormTotal
No Reads
droEug1
AGCGAA----TATGCTTGTGC--GG------------------------------CAGCAAACAGT---------------------------GGGTGCAACAACTAT---GCG-----GCCAC----TATGGCACAACAATGACAGCATTGGGCAAACATATCACGCGATCAATT---------------------------------------TGTCAAACAAGCTGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------CATC---------------AGCTGCT---ACAATA----------------------GATGC-TG---CAGCACCAATAGCAGCAGCAACAT---------------------------------------------------------CGCCA---GTAAA-ATC------------------AGCAATAA---GA----GCACAGCAGC---------------------------------AGCAGCAGCAGCAGCAACAGCAACAACAACAAC---------------------AGTTSizeHit CountTotal NormTotal
No Reads
dm3
GTGACT----GCAACTG---TGTGG--------------------------------------------------------------------GTTAGTCCCGCGTTCTCAGTGTGAGTG--TATATATGT---------GCAGCAACACG------------------ATCAATA---------------------------------------AACGAGACAAGCAGCAACAAC-----------------AACACCAGCAAGC------------------------------------------------------------------------------ACTACACCAATAACAACAAC------------------GACAACAA---------CAGTAAA------GAACAC-------------------------------------------------------CA---AC---AACATT------------GACAACC---ACA---CCA----------------------AC-AAC------AATC------------------------------------------------------------ACAACAAACACTACACCAACAATAGCA----------------------------A---CA---ACACCAATATC---------------------------------AACAACAACAGAAACAACAACAGAAACAACAAC-------AACA-TACACGCACAACGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------A---CA---ACACCAATATC---------------------------------AACAACA...................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATAGCA----------------------------A---CA---ACACCAATA.............................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
............................................................................................................TCAGTGTGAGTG--TATATATGT---------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................GCAAGC------------------------------------------------------------------------------ACTACACCAATA............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................ACCAATAACAACAAC------------------GACAACAA---------CAGT.............................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ACACCAATATC---------------------------------AACAACAAC.................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................CAA---------CAGTAAA------GAACAC-------------------------------------------------------CA---GG---T............................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACCAACAATAGCA----------------------------A---CA---A.....................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.................................................................................................................................................................................................................................GCAGCAACAAC-----------------AACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAAACAACAACAGAAAAG..............................21110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................AACAACAAC------------------GACAACAA---------CA...............................................................................................................................................................................................................................................................................................................................................................................................19180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................ACAACAAC------------------GACAACAA---------CA...............................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GGGT--------GGCAG-----------------------------------------------------------------------CCTGGGAGCCGCCAGTGGAAGCAGCGTGGGCG--ACTCCCTGT---------G---------------------------------------------------------GAGTAGCAGCGAGGCCCAGCAGTTCCAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------CAGCAGGCCCAGCAACAAGCACA---GC---AGCAGC------------------------------------ACCATCA----CCACCAGC-AGCAGC---AGCA------------------------GT-------------------------------------------------------------TACAGCAGCA---------------ACAACAACA---GGCGCAGCAGCAGCAACAACAGCAGCAGC---------------ACCATCACCACCACCATCAGCAGCAGCAGAGTG---------------------GACASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................AGCGAGGCCCAGCAGTTCCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000200000000000
.................................................................................................CGCCAGTGGAAGCAGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
...............................................................................................................GCGTGGGCG--ACTCCCTGT---------G---------------------------------------------------------GAGTAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGC---------------ACCATCACCACC..............................................2320.50100000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGC---------------ACCATC....................................................1860.50300000300000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---GC---AGCAGC------------------------------------ACCATCA----CCACC...................................................................................................................................................................................................................................................2320.50100000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAACA.................................................................................17200.10200000000002000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---GC---AGCAGC------------------------------------ACCA...............................................................................................................................................................................................................................................................15200.10200000000002000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAACAGCAGCAGC---------------..........................................................25200.05100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACAGCAGCAGC---------------A.........................................................22200.05100010000000000000
..................................................................................................................................................................................................................................CAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------CAGCAGG.....................................................................................................................................................................................................................................................................................................................................19200.05100000000000100000
...............................................................................................................................................................................................................................CAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------CAGC........................................................................................................................................................................................................................................................................................................................................19200.05100100000000000000
droSec2
AG--CA----GTTGCAACTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGCAGCAGTTGC------------------------------------------------T------------GCAGCGTC---------GCCGCC---------TGC------------------AACAGCAACTGCTGCAACAG---GGCGTGCCCTCGCCTCC--GGC---------AA--------------CAGCAAATG---------------------------------------------------CA---ACAACAACAACGGCAGGTCTCACCTGCAATCAAC---AGTA------------------------TT-------------------------------------------------------------TGCGACAGCA---------------GCAGCAACA---ACTGCAGCAGCAACAGCAGCAGCAGCAGCAATATGTGG----ACCACAACAGCAACAATGACAATGACTATTTGAAC---------------------AACTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................GCAGCAGCAGTTGC------------------------------------------------T------------GCAGCGTC---------......................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTA------------------------TT-------------------------------------------------------------TGCGACAGCA---------------GCA...............................................................................................................1911.0011000
........................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAACAG---GGCGTGCCCTC................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................CTCC--GGC---------AA--------------CAGCAAATG---------------------------------------------------TT---T..........................................................................................................................................................................................................................................................................21100.1010100
droYak3
GCAAAA----TGCG------------------------------------------TGGCA--------TGAACAATATGATTCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCA----------------------G--------------------------------------CAAC---------AACGGA---------AGCTGCAACATAAATAAATACCA-TTCAG---------CACAAAT------GGACAT--------CAGCAGCAGTAGCAACA-----GCAG---------------CA---------ACAGCAGC---------------A--------------------------------------------G---CAGCAACCGCAGCAGCAGCAGCA------------------------------------------------ACAGCAGCAACA-------------------------GCAGCAGCAGCAGCAGCAACA---GCAGCAGAAGC------------AGCA------------ACAGCATCAGCAGCAGCATCCCCCGCAGCAACACAAAA---------------------AGC-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC---------------A--------------------------------------------G---CAGCAACCGCAGCAGC..........................................................................................................................................................................................................................2514.00400000000004
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAGCAACCGCAGCAGCAGC.......................................................................................................................................................................................................................2040.50200200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA-------------------------GCAGCAGCAGC...................................................................................................................20200.25505000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---------------CA---------ACAGCAGC---------------A--------------------------------------------G---CAGC......................................................................................................................................................................................................................................20200.25505000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------------AGCA------------ACAGCATCAGCAGCA................................................21140.07101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA-------------------------GCAGCAGCAGCAGCAGC.............................................................................................................26200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA-----GCAG---------------CA---------ACAGCAGC---------------...........................................................................................................................................................................................................................................................................................19200.05100010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------ACAGCAGC---------------A--------------------------------------------G---CAGCAAC...................................................................................................................................................................................................................................18200.05100000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------------------------GCAGCAGCAGCAGCAGCAAC..........................................................................................................22200.05101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------ACAGCAGCAACA-------------------------GCAGCAGCAGC...................................................................................................................24200.05101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCA------------------------------------------------ACAGCAGCAAC........................................................................................................................................................25200.05100000000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAACA---GC....................................................................................................20200.05101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCAACA---GC....................................................................................................23200.05101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------ACAGCATCAGCAGCAGC..............................................19200.05101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------------------------------------------------ACAGCAGCAACA-------------------------GCAGCA........................................................................................................................22200.05101000000000
droEre2
CGGGAG----TGGGCAC---------------------------------------TGGAG--------CGGGCAACTCGGCTGGAAGCCTTGGGGCTGCCAGTGGAAGCAGCGTGGGCG--ACTCCCTGT---------G---------------------------------------------------------GAGCAGCAGCGAGGCCCAGCAGTTCCAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------CAGCAGGCCCAGCAACAGGCACA---GC---AGCAGC------------------------------------ACCATCA----CCACCAAC-AGCAGC---AGCA------------------------GT-------------------------------------------------------------TGCAGCAGCA---------------ACAGCAACA---GGCGCAGCAACAGCAACAACAGCAGCAGC---------------ATCATCACCACCACCATCAGCAGCAGCAGGGCG---------------------GACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................CAGCAGTTCCAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............................................................................................................................................................................................................................................................................................................................................................2211.0010100000
........................................................................................................................................................................................................GCAGCAGCGAGGCCCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.............................................................................................................................CCCTGT---------G---------------------------------------------------------GAGCAGCAGCGAGGCCCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
.................................................................................................................GTGGGCG--ACTCCCTGT---------G---------------------------------------------------------GAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
..................................................................................................GCCAGTGGAAGCAGCGTGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGC---------------ATCATCACCACC..............................................2311.0011000000
.............................................................................................................................CCCTGT---------G---------------------------------------------------------GAGCAGCAGCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA---------------ACAGCAACA---GGCGC.................................................................................................2320.5011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GC---AGCAGC------------------------------------ACCATCA----CCACCA..................................................................................................................................................................................................................................................2220.5011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGC---------------ATCATCACCACC..............................................2220.5010000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------CAGCAGGCCCAGCAACA...........................................................................................................................................................................................................................................................................................................................1930.3310001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAACAACAGCAGC............................................................................20200.1021100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAGCAGCAGC---------------A.........................................................22200.1020001010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAACAACAGCAGCA...........................................................................24110.0910100000
...................................................................................................................................................................................................................................AGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------CAGCAGGC....................................................................................................................................................................................................................................................................................................................................19170.0610100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCAAC-AGCAGC---AGCA------------------------..........................................................................................................................................................................................................18200.0510000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAACAGCAG.............................................................................20200.0511000000

Generated: 05/16/2015 at 09:24 PM