dvi_7513

Name	Class	Family	Strand
(CATA)n	Simple_repeat	Simple_repeat	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAAGTGCGCCAGAAAAGGCTGACGATGACAATGACGATGATGATGATGAGGTATTTACACGCCTTTCTCTGTTAACTTTACATAGAAGCTAACATACATATGTACATACATACATACATGCATGCATGCATACATACGTACGTACGTACATACATACATACATACATACATACATACATACCTACATACATACATACATACATACATACATACATACATACATACCTACATACCTACATACCTACATACCT ******************************************************************************************************************************************.(((.(((......))).)))........................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V116 male body	M047 female body	M061 embryo	V047 embryo	SRR060664 9_males_carcasses_total	SRR060667 160_females_carcasses_total	SRR060678 9x140_testes_total	SRR060687 9_0-2h_embryos_total	SRR060682 9x140_0-2h_embryos_total	SRR060684 140x9_0-2h_embryos_total	SRR060668 160x9_males_carcasses_total
............AAAAGGCTGTCGATGACGA............................................................................................................................................................................................................................	19	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........................................ATGATGAGGTGTTTACAGG..............................................................................................................................................................................................	19	2	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
...................................GATGATGATGATGAGGTA......................................................................................................................................................................................................	18	0	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0
.......................GATGACAATGACGATGATGAT...............................................................................................................................................................................................................	21	0	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
...........................ACAATGACGATGATGCTGA.............................................................................................................................................................................................................	19	1	7	0.14	1	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CGTACGTACATACATACATA...........................................................................................	20	0	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
...............................TGATGATGATGATGATGATGTATTTA..................................................................................................................................................................................................	26	2	7	0.14	1	0	0	0	0	0	0	1	0	0	0	0
...........GACAAGGCTGACGAGGAC..............................................................................................................................................................................................................................	18	2	9	0.11	1	0	0	0	0	0	0	0	0	1	0	0
.............................AATGACGATGATGATGAT............................................................................................................................................................................................................	18	0	10	0.10	1	0	0	0	0	0	1	0	0	0	0	0
...........GAAATGGCTCACGATGATA.............................................................................................................................................................................................................................	19	3	20	0.10	2	0	0	0	0	0	0	0	0	0	1	1
.............AAAGGCTTACCAAGACAATG..........................................................................................................................................................................................................................	20	3	12	0.08	1	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................ATACCTACATACATACATACATAC..................................................	24	0	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................ATACATACATGCATGCATGC..........................................................................................................................	20	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................CATACATACCTACATACATAC..........................................................	21	0	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.........................................GATGATCAGGTAGATACAC...............................................................................................................................................................................................	19	3	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................CATACATACATGCATGCATGC..........................................................................................................................	21	0	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................CATACATACATACATACATACATACC.....................................................................	26	0	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................CATACATACATACATACATACATACC.........................	26	0	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................ATACATACATACATACATACATAC......................................................................	24	0	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................ACATACATACATACATACA.................................	19	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................ACATACATGCATGCATGCAT........................................................................................................................	20	0	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0
................................AACGATGATGATGATGAGG........................................................................................................................................................................................................	19	1	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0
.....................AGGATGACAATGACGATGAG..................................................................................................................................................................................................................	20	2	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................TACATACATACATACATGC..................................................................................................................................	19	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TACATACATACATACATACA.....................................................................................	20	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................ATACCTACATACATACATACAT....................................................	22	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................ATACATACATACATACATACC.....................................................................	21	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

TTTCACGCGGTCTTTTCCGACTGCTACTGTTACTGCTACTACTACTACTCCATAAATGTGCGGAAAGAGACAATTGAAATGTATCTTCGATTGTATGTATACATGTATGTATGTATGTACGTACGTACGTATGTATGCATGCATGCATGTATGTATGTATGTATGTATGTATGTATGTATGGATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGGATGTATGGATGTATGGATGTATGGA ************************************************.(((.(((......))).)))........................................******************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060678 9x140_testes_total	SRR060673 9_ovaries_total	SRR060683 160_testes_total	SRR1106722 embryo_10-12h	M028 head	SRR060664 9_males_carcasses_total	M047 female body	SRR060681 Argx9_testes_total	SRR060689 160x9_testes_total
............................................................CGGAAAGAGACAATTGAAATGTATCTT....................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0
................................................................................................................................................................GTATGTATGTATGTATGTAT.......................................................................	20	0	20	0.20	4	4	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................GTATGTATGTATGTATGTAT...........................	20	0	20	0.20	4	4	0	0	0	0	0	0	0	0
.....................................................AAATGTGCGGAGAGTGACTA..................................................................................................................................................................................	20	3	8	0.13	1	0	1	0	0	0	0	0	0	0
..........................................................................................TTGTATGTATACATGTCTGTA............................................................................................................................................	21	1	9	0.11	1	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................GTATGTATGTATGTATGGATGTATGT.............................................................	26	0	17	0.06	1	0	0	0	1	0	0	0	0	0
.....................CGCTACTGTTACTGCTAC....................................................................................................................................................................................................................	18	1	19	0.05	1	0	0	0	0	1	0	0	0	0
.......................................TACTACTATTGCATCAATG.................................................................................................................................................................................................	19	3	19	0.05	1	0	0	0	0	0	1	0	0	0
.............................................................................................TATGTATACATGTATGTATGT.........................................................................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................TGTATGTATGTATGGATGTAT...............................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	1
............................................................................................................GTATGTATGTACGTACGTACGTA........................................................................................................................	23	0	20	0.05	1	0	0	0	0	0	0	1	0	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12875:17463546-17463796 +	dvi_7513	AAAGTGC------------------------------------------------------------------------------------GCCAGAAAAGGCTGACGATGACAATGACGATGATGATGATGAGG--TATTTAC------------------------------------------------------------------------------------------------ACGCCTT----------------------TCTCTGTTAA---------------------------------CTTTACATAGAAGCTAACATACATATGTAC----ATACATACATACATGCATGCATGCATACATACGTACGTACGTACATACATACATACATACATACATACATACATACCTACATACATACATACATACATACATACATACATACATACATACCTA----CATA----CCTACATACCT----ACATACCT
droMoj3	scaffold_6496:3578954-3579184 +		ATA---------------------------------------------ACAA-------------------TACAA---------------------------------------------------------TA--GAT------------------------------------------------------------------------------------------------------------ACTTATGTAGATATTTACTTA--------------------------CATATATAAATATATAGCTATAAATAGTCACATAGATACATAGATAC----ATAGATACATAGATACATAGATATATAGATATATAGATATATAGATACATAGATACATAGATACATAGATACATAGATACATAGATACATAGATACATAGATACATAGATACATAGATACATA----GATA----CATAGATACAT----AGATACAT
droGri2	scaffold_3797:485-715 -		AATA---------------------A--------------------TAATAA-------------------TA-----------------------------------------------------ATAATAATA--TAT------------------------------------------------------------------------------------------------------------ACATATACATAT--------A--------------------------CATATACATATATACATATATACATATATACATATATACATATATAC----ATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATA----TATA----CATATATACAT----ATATACAT
droWil2	scf2_1100000000957:13566-13778 +		GAAG---------------------A-----------------------------------------------GAAGATAGAGACAAGTCCTTCATC-----------------------------AGAATAATG--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATACATATATACATATATAC----ATATATACAT--ATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATAT----AT----ACATATAT
dp5	Unknown_group_26:26373-26576 +		AAAGTCC------------------------------------------------------------------------------------GTCTGCGAGCATTGGCTGT------------------------------------GCCGTCCCC----------------------------------------------TGAT------------------------------------------------------------------------------------------GAT--------------ATTTATGTATGTACGTGTACCGCAGTC------------CACGT-----TATGACTATGTATATGTAAATATATACGTATGCAAAAATATTTATGCATATATGTATGTTTATTCTTACATACATACATACATATGTACATATTTATGAGCATGCGAG----CAGA----CAAG-AAATGC----ACACAGAC
droPer2	scaffold_58:50707-50914 -		GATG---------------------A-----------------------------------------------------------------------------------------------------------TA--TATATAT----------------------------------------------------------------------------------------------------------------------------A--------------------------CATATATATATACATATACATATACATATACATATACATATACATAT----ACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACA----TATA----CACATACATAT----ACATATAC
droAna3	scaffold_863:263-494 +		GATA---------------------A--------------------TAAAAA-------------------TAAAAGATAGAGA-------------------------TGAAGAT------------------A--GATT---------------------------------------------------------------------------------------------------AAAACTTT---------------------TTATTTC-AT-AATTAATCAAAGTTT--------------------------------TATAAATATAT-CACGTATGGCCATACATAAATACATAAATACATAAATACATAAATACATAAATACATAAATACATAAATACATAAACACATAAATACATAAATACATAAATACATAAATACATAAATACATAAATACATA----AATA----CATAAATACAT----AAATACAT
droBip1	scf7180000396733:477763-477945 -		CTCC---------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAG----------------------------------------TCCTTATACATACATATATACATATATAC----ATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATATATATATACATATATACATA----TATA----TATATATACAT----ATATACAT
droKik1	scf7180000301155:1270-1489 +		CGGTGTTGTTGATGAATCATCGATGACATTCCATACAAACTACTGATAAAAT-------------------TAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATAC--ATATATATATATAC----ATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATA----TATA----CATATATAC--------ATATAT
droFic1	scf7180000449809:5740-5885 -		ATA---------------------------------------------AT------------------------------------------------------------------------------GATAAGG--TATATATATATTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATAT----ATATATATATATATATATATATATATACATATATATATATATATATACATATATATATATATATACATATATATATATACATACATAC-----------------TATTTATA-----------------A----CATCTATGCAG----ACGTA---
droEle1	scf7180000489882:152-334 -		CTGT----------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------ATATACATATATACATATATACATATATAC----ATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATA----TATA----CATATATACAT----ATATACAT
droRho1	scf7180000770833:559-772 +		TGAT----------------------------------------------------------------------------------------------------------------------------GAAAATGTATACATCT----------------------------------------------------------------------------------------------------------------------------A--------------------------TACATCTATACAT----ATATACATATATACATATATACATATATAC----ATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATA----TATA----CATATATACATATATACATATAT
droBia1	scf7180000302126:917276-917473 -		AGAT--------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAGATACATTGATACGTTGATAAAGATGCATAGATACAAAGATAC----AAAGATACTTAGATACAAAGATAAAAAGATACTTAGATACAAAGATACAAAGATACTTAGATACAAAGATACTTAGATACAATGATACAAAGATACTTAGATACAAAGATACATATATACAGA----GATA----CAAAGATACAA----AGATACTT
droTak1	scf7180000413969:47611-47782 -		TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTACATAAATACATAAATAC----ATAAATACATAAATACATAAATACATAAATACATAAATACATAAATACATAAATACATAAATACATAAATACTTAAATACATAAATACATAAATACATAAATACATAAATACATAAATACTTA----AATA----CATAAATACAT----AAATACAT
droEug1	scf7180000407462:561-779 -		TGGAGGTGACGAGG--TTATTG---------------------------------------------------------------------------------------------------------------------TAGATATGTCACTATA----------------------------------------------TATA------------------------------------------------------------------------------------------CAT--------------ATATACATATATACATATATACATATATAC----ATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATA----TATA----CATATATACAT----ATATACAT
dm3	chrUextra:3249424-3249644 -		CTG---------------------------------------------ACGACGACAGTATCGCAAGACGGTGCGA---------------------------------------------------------TC--TA----------------------------------------------------------------------------------------------------------------------------------TCTTTAGTTA---------------------------------ATTTACATATATACATATATACATATATAC----ATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATA----TATA----CATATATACAT----ATATACAT
droSim2	2r:5337437-5337609 -		T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGACATACTGACATACGGACAGAC----GGACATACGGACATACGGACATACGGACATACGGACATACGGACATACGGACATACGGACATACGGACATACGGACATACGGACATACGGACATACGGACATACGGACATACGGACATACTGA----CATA----CGGACATACGG----ACATACGG
droSec2	scaffold_1246:5192-5382 +		CCTC---------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGCTATTTTTTTAACACAGCTG--------------------------------TACATATATATATAC----ATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATA----TATA----CATATATACAT----ATATACAT
droYak3	2L:2721893-2722179 +		AAAGCAC------------------------------------------------------------------------------------GCAGGAAAACGCTGCCGAC------------------------------------GGAGCCGCTGACTTCGACGTCGATTTGTGGCTGCCTTTCGCTGATAAGCCACAAT-----------------------------------------------TCGTACTCATCT--------A--------------------------AATATATCATGAAATATGCATACATAGATACAAAGATACATAGATAC----AAAAATAGAAAGATACATAGATACAAAAATAAATAGATATAAAAATTCATAAATACAAAGATACATAGTTACAAAGATACATAGATACATAGATAAATAGATACAATGATACAAAGATACAAA----GATA----CAAAGATACAA----AAATACAT
droEre2	scaffold_4929:3735951-3736196 -		AAATATT------------------------------------------------------------------------------------AAAAGCG-GCAATAACTAT------------------------------------GTGTTCCGA----------------------------------------------CAGTAAGTTAAACTTTGAGACAATTTTTACTACTTTGTG-------------------------------------------------------CA---------------CGTAGCATATACAC-----TACATGCAAAC----AGACATGCAAACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATA----CATA----CATACATACAT----ACATACAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

AAAGTGC------------------------------------------------------------------------------------GCCAGAAAAGGCTGACGATGACAATGACGATGATGATGATGAGG--TATTTAC------------------------------------------------------------------------------------------------ACGCCTT----------------------TCTCTGTTAA---------------------------------CTTTACATAGAAGCTAACATACATATGTAC----ATACATACATACATGCATGCATGCATACATACGTACGTACGTACATACATACATACATACATACATACATACATACCTACATACATACATACATACATACATACATACATACATACATACCTA----CATA----CCTACATACCT----ACATACCT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................................................................................GATGATGATGATGAGG--TA.............................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................GATGACAATGACGATGATGAT........................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................CGTACGTACATACATACATA.......................................................................................................	20	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................AATGACGATGATGATGAT.....................................................................................................................................................................................................................................................................................................................................................................................	18	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTACATACATACATACATAC..............................................................	24	19	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................ATACATACATGCATGCATGC......................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................CATACATACCTACATACATAC......................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CATACATACATGCATGCATGC......................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................CATACATACATACATACATACATACC.................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACATACATACATACATACATACC.....................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................ATACATACATACATACATACATAC..................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATACATACATACATACA.............................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................ACATACATGCATGCATGCAT....................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TAC----ATACATACATACATGC..............................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................TACATACATACATACATACA.................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTACATACATACATACAT................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................ATACATACATACATACATACC.................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATA---------------------------------------------ACAA-------------------TACAA---------------------------------------------------------TA--GAT------------------------------------------------------------------------------------------------------------ACTTATGTAGATATTTACTTA--------------------------CATATATAAATATATAGCTATAAATAGTCACATAGATACATAGATAC----ATAGATACATAGATACATAGATATATAGATATATAGATATATAGATACATAGATACATAGATACATAGATACATAGATACATAGATACATAGATACATAGATACATAGATACATAGATACATA----GATA----CATAGATACAT----AGATACAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

AATA---------------------A--------------------TAATAA-------------------TA-----------------------------------------------------ATAATAATA--TAT------------------------------------------------------------------------------------------------------------ACATATACATAT--------A--------------------------CATATACATATATACATATATACATATATACATATATACATATATAC----ATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATA----TATA----CATATATACAT----ATATACAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

GAAG---------------------A-----------------------------------------------GAAGATAGAGACAAGTCCTTCATC-----------------------------AGAATAATG--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATACATATATACATATATAC----ATATATACAT--ATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATAT----AT----ACATATAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................ATAGAGACAAGTCCTTCATC-----------------------------AGAAT.....................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
...............................................................................AGAGACAAGTCCTTCATC-----------------------------AGA.......................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0

dp5

AAAGTCC------------------------------------------------------------------------------------GTCTGCGAGCATTGGCTGT------------------------------------GCCGTCCCC----------------------------------------------TGAT------------------------------------------------------------------------------------------GAT--------------ATTTATGTATGTACGTGTACCGCAGTC------------CACGT-----TATGACTATGTATATGTAAATATATACGTATGCAAAAATATTTATGCATATATGTATGTTTATTCTTACATACATACATACATATGTACATATTTATGAGCATGCGAG----CAGA----CAAG-AAATGC----ACACAGAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCATGCGAG----CAGA----CAAG-A.................	21	1	3.00	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................ATGTATGTACGTGTACCGCA........................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................TGGCTGT------------------------------------GCCGTCCCC----------------------------------------------TGAT------------------------------------------------------------------------------------------G................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................GAGCATTGGCTGT------------------------------------GCCGTCCC..............................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
......C------------------------------------------------------------------------------------GTCTGCGAGCATTGGCTGT------------------------------------G.....................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0
...............................................................................................GCGAGCATTGGCTGT------------------------------------GCCGTCCA..............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................TTGGCTGT------------------------------------GCCGTCCCC----------------------------------------------TGAT------------------------------------------------------------------------------------------.................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....TCC------------------------------------------------------------------------------------GTCTGCGAGCATTGGCT............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................TCTGCGAGCATTGGCTGT------------------------------------GC....................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................ATTGGCTGT------------------------------------GCCGTCCCC----------------------------------------------TG.............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................TGCGAGCATTGGCTGT------------------------------------GCC...................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTTATGAGCATGCGAA----...............................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................................................................................CGAGCATTGGCTGT------------------------------------GCCGTC................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TGTATGTACGTGTACCGCA........................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....TCC------------------------------------------------------------------------------------GTCTGCGAGCATTGGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTATGAGCATGCGAG----CA.............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................GCGAGCATTGGCTGT------------------------------------GCCGTCCCC----------------------------------------------...............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................GCATTGGCTGT------------------------------------GCCGTCCC..............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCATGCGAG----CAGA----CAA....................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTATGAGCATGCGAG----CAG............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................GCATTGGCTGT------------------------------------GCCGTCCCC----------------------------------------------...............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................GTCTGCGAGCATTGGCTGT------------------------------------G.....................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCATGCGAG----CAGA----CAAG-..................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................CATTGGCTGT------------------------------------GCCGTCCCC----------------------------------------------TG.............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGAGCATGCGAG----CAGA----.......................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................AT--------------ATTTATGTATGTACGTGTA.............................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TGTATGTACGTGTACCGCAGT......................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................AGCATTGGCTGT------------------------------------GCCGTCCCC----------------------------------------------...............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGAGCATGCGAG----CAGA----.......................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TGTACGTGTACCGCAGTC------------CAC......................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................TATGTATGTTTATTCTTACAT........................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................TTGGCTGT------------------------------------GCCGTCCCC----------------------------------------------TTTC------------------------------------------------------------------------------------------.................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	1	0	0	0	0
..AGTCC------------------------------------------------------------------------------------GTCTGCGAGCATTGG..............................................................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCGAG----CAGA----CAAG-AAATGC----A.......	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGAG----CAGA----CAAG-AAATGC----........	21	3	0.33	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGAG----CAGA----CAAG-AAATGC----AA......	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.AAGTCC------------------------------------------------------------------------------------GTCTGCGAGCATTG...............................................................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0

droPer2

GATG---------------------A-----------------------------------------------------------------------------------------------------------TA--TATATAT----------------------------------------------------------------------------------------------------------------------------A--------------------------CATATATATATACATATACATATACATATACATATACATATACATAT----ACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACA----TATA----CACATACATAT----ACATATAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

GATA---------------------A--------------------TAAAAA-------------------TAAAAGATAGAGA-------------------------TGAAGAT------------------A--GATT---------------------------------------------------------------------------------------------------AAAACTTT---------------------TTATTTC-AT-AATTAATCAAAGTTT--------------------------------TATAAATATAT-CACGTATGGCCATACATAAATACATAAATACATAAATACATAAATACATAAATACATAAATACATAAATACATAAACACATAAATACATAAATACATAAATACATAAATACATAAATACATAAATACATA----AATA----CATAAATACAT----AAATACAT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................................................................................................................................................................................................AATATAT-CACGTATGGCCATA.......................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................CATAAATACATAAATACATAAATACATA...........................................................................................	28	20	0.05	1	0	1	0	0	0	0

droBip1

CTCC---------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAG----------------------------------------TCCTTATACATACATATATACATATATAC----ATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATATATATATACATATATACATA----TATA----TATATATACAT----ATATACAT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGGTGTTGTTGATGAATCATCGATGACATTCCATACAAACTACTGATAAAAT-------------------TAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATAC--ATATATATATATAC----ATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATA----TATA----CATATATAC--------ATATAT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATA---------------------------------------------AT------------------------------------------------------------------------------GATAAGG--TATATATATATTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATAT----ATATATATATATATATATATATATATACATATATATATATATATATACATATATATATATATATACATATATATATATACATACATAC-----------------TATTTATA-----------------A----CATCTATGCAG----ACGTA---	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTGT----------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------ATATACATATATACATATATACATATATAC----ATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATA----TATA----CATATATACAT----ATATACAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGAT----------------------------------------------------------------------------------------------------------------------------GAAAATGTATACATCT----------------------------------------------------------------------------------------------------------------------------A--------------------------TACATCTATACAT----ATATACATATATACATATATACATATATAC----ATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATA----TATA----CATATATACATATATACATATAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGAT--------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAGATACATTGATACGTTGATAAAGATGCATAGATACAAAGATAC----AAAGATACTTAGATACAAAGATAAAAAGATACTTAGATACAAAGATACAAAGATACTTAGATACAAAGATACTTAGATACAATGATACAAAGATACTTAGATACAAAGATACATATATACAGA----GATA----CAAAGATACAA----AGATACTT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTACATAAATACATAAATAC----ATAAATACATAAATACATAAATACATAAATACATAAATACATAAATACATAAATACATAAATACATAAATACTTAAATACATAAATACATAAATACATAAATACATAAATACATAAATACTTA----AATA----CATAAATACAT----AAATACAT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TGGAGGTGACGAGG--TTATTG---------------------------------------------------------------------------------------------------------------------TAGATATGTCACTATA----------------------------------------------TATA------------------------------------------------------------------------------------------CAT--------------ATATACATATATACATATATACATATATAC----ATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATA----TATA----CATATATACAT----ATATACAT	Size	Hit Count	Total Norm	Total
No Reads

dm3

CTG---------------------------------------------ACGACGACAGTATCGCAAGACGGTGCGA---------------------------------------------------------TC--TA----------------------------------------------------------------------------------------------------------------------------------TCTTTAGTTA---------------------------------ATTTACATATATACATATATACATATATAC----ATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATA----TATA----CATATATACAT----ATATACAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.TG---------------------------------------------ACGACGACAGTATCGCAAGACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	75.15	1503	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	18	0	0	0	23	0	0	0	0	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	9	0	5	0	0	0	0	0	5	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	23	0	35	0	0	0	0	0	1	69	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44	172	0	0	12	0	26	95	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	115	0	0	0	0	0	0	0	0	0	253	0	312	0	0	0	0	0	0	0	0	0	0	0	0	0	0	82	0	0	163	0	0	0	0	0	0
.TG---------------------------------------------ACGACGACAGTATCGCAAGACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	35.65	713	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39	0	0	0	10	0	0	0	0	0	0	0	0	0	31	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	8	4	0	0	0	6	0	0	3	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	81	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	22	0	55	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43	144	0	20	0	0	0	0	0	0	73	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	69	78	0	0	0	0	0	0
.TG---------------------------------------------ACGACGACAGTATCGCAAGACGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	18.70	374	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	4	0	4	0	0	0	2	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	14	15	0	0	5	0	0	0	0	0	0	0	0	20	0	0	0	5	0	0	0	1	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	138	0	96	0	0	0	0	0	0
.TG---------------------------------------------ACGACGACAGTATCGCAAGACGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	4.00	80	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	1	0	43	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................GACGACAGTATCGCAAGACGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	2.90	58	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................GACAGTATCGCAAGACGGTGCGA---------------------------------------------------------T..................................................................................................................................................................................................................................................................................................................................................................................	24	20	2.80	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
..................................................GACGACAGTATCGCAAGACGGTGCGA---------------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................	26	20	2.60	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	3	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	2	6	1	0	0	0	0	0
..................................................GACGACAGTATCGCAAGACGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	1.25	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
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..................................................GACGACAGTATCGCAAGACGGTTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TG---------------------------------------------ACGACGACAGTATCGCAAGACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................TCGCAAGACGGTGCGA---------------------------------------------------------TC--TA----------------------------------------------------------------------------------------------------------------------------------TCTTT......................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.................................................CGACGACAGTATCGCAAGACGGTGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................CGACGACAGTATCGCAAGACGGTGCGC---------------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGACATACTGACATACGGACAGAC----GGACATACGGACATACGGACATACGGACATACGGACATACGGACATACGGACATACGGACATACGGACATACGGACATACGGACATACGGACATACGGACATACGGACATACGGACATACTGA----CATA----CGGACATACGG----ACATACGG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................................................................................................................................................................................................TACGGACAGAC----GGACATACGGACATA...............................................................................................................................................	26	2	1.50	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGACATACTGA----CAT............................	18	2	1.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................ATACGGACAGAC----GGACATAC......................................................................................................................................................	20	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CGGACATACGGACATACGGAC..................................................................................................................	21	20	0.10	2	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................CGGACATACGGACATACGGAC..................................................................................................	21	20	0.10	2	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................CGGACATACGGACATACGGAC..........................................................................................	21	20	0.10	2	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................CGGACATACGGACATACGGAC..........................................................................................................	21	20	0.10	2	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................CGGACATACGGACATACGGAC..........................................................................	21	20	0.10	2	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................CGGACATACGGACATACGGAC..................................................................................	21	20	0.10	2	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................CGGACATACGGACATACGGAC..........................................................................................................................	21	20	0.10	2	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGGACA.........................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGGACA.................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................AC----GGACATACGGACATACGGA...........................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................ACGGACATACGGACATACGGA...................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGGACA.........................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGGACA.................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGGACATACGGA...................................................	30	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................ATACGGACATACGGACATACGGAC..........................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGGACATACGGA...........................................................	30	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGGACATACGGA...........................................................................	30	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................ATACGGACATACGGACATACGGAC..................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGGACATACGGA...........................................	30	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGGACATACGGA...................................................................	30	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACATACGGACATACGGA...................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGACATACGGACATACGGAC..........................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGACATACGGACATACGGAC..................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................ATACGGACATACGGACATACGGAC..................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................ACGGACATACGGACATACGGA...........................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGG....................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................ACGGACATACGGACATACGGA...................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGACATACGGACATACGGAC..................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGGACATACGGA...................................................................................................................	30	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGACATACGGACATACGGAC..........................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGGACATACGGA...........................................................................................................................	30	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGACATACGGACATACGGAC..........................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGG............................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACATACGGACATACGGA...................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACATACGGACATACGGA...................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................ATACGGACAGAC----GGAC..........................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGG............................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................ATACGGACATACGGACATACGGAC..................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGG....................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACATACGGACATACGGA...........................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGG....................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGGACATACGGA...................................................................................................	30	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACATACGGACATACGGA...........................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGGACATACGGA...........................................................................................................	30	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGGACATACGGA...........................................................................................	30	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................ATACGGACATACGGACATACGGAC..........................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGGACA.........................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACATACGGACATACGGA...........................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGGACATACGGA...................................................................................	30	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CGGACATACGGACATACGGAC..................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TACGGACATACGGACATACGG............................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................ATACGGACATACGGACATACGGAC..........................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................C----GGACATACGGACATACGGAC..........................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

droSec2

CCTC---------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGCTATTTTTTTAACACAGCTG--------------------------------TACATATATATATAC----ATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATA----TATA----CATATATACAT----ATATACAT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
CCTC---------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGCTATTTTTTTAACACAGC...................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0

droYak3

AAAGCAC------------------------------------------------------------------------------------GCAGGAAAACGCTGCCGAC------------------------------------GGAGCCGCTGACTTCGACGTCGATTTGTGGCTGCCTTTCGCTGATAAGCCACAAT-----------------------------------------------TCGTACTCATCT--------A--------------------------AATATATCATGAAATATGCATACATAGATACAAAGATACATAGATAC----AAAAATAGAAAGATACATAGATACAAAAATAAATAGATATAAAAATTCATAAATACAAAGATACATAGTTACAAAGATACATAGATACATAGATAAATAGATACAATGATACAAAGATACAAA----GATA----CAAAGATACAA----AAATACAT

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

AAATATT------------------------------------------------------------------------------------AAAAGCG-GCAATAACTAT------------------------------------GTGTTCCGA----------------------------------------------CAGTAAGTTAAACTTTGAGACAATTTTTACTACTTTGTG-------------------------------------------------------CA---------------CGTAGCATATACAC-----TACATGCAAAC----AGACATGCAAACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATA----CATA----CATACATACAT----ACATACAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................TACATACATACATACATACATACATACA.................................................................................................	28	20	0.05	1	1	0	0	0	0	0	0

dvi_7513

scaffold_12875:17463596-17463746 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads