ID:

dvi_7480

 Coordinate:

scaffold_12875:17355599-17355859 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-76.5 -76.4 -76.4

Flybase annnotation

CDS [Dvir\GJ20084-cds]; exon [dvir_GLEANR_5542:1]; exon [dvir_GLEANR_5542:2]; CDS [Dvir\GJ20084-cds]; intron [Dvir\GJ20084-in]

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+

Sense Strand Reads

-----#############################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CACTAATGTCGGACAACCAGGACAAAGAAGAAACATTGGCCAGTTTCCAGGTAAGAAACGCAGCATCGATATCCCGCTAGACGCTGCAAACTTCTGTTATTATTTGTGGCCCAAACGAGTGCTGAGTGCGCACATTTTCAATGCGTATGTTGTGTGTATGTGTGTGTGTGTGTGTATGAGCTTGCAAGTGCGAAAGTGTGTGTGGGTGTGCGAGTATGGGGGTGTGTGTGCGTGTGTGTGTGGGTGTCTGCGTCTTGGAATTGCAATCATTTTGAATGCAAACAAAACTCAATTGATATTCAATGTCACAGATGATAACTGGAATAGAGGATGTTGGCGAAGCCTTCTCCCACCTGGAGGC
**************************************************.(((((..((((.....((((((((((((.((((((((.((((((((....((((((.(((((.(((...(((..((((((((((.....((((((((.......))))))))....)))))))))).)))((((....)))).....))).)))))..)))))))))))))).)))).)))).)).))).))))))))))))))))...(((((.(((...))).)))))............((((((...))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060657
140_testes_total
 GSM1528803
follicle cells		 M047
female body
 SRR060659
Argentina_testes_total
 SRR060669
160x9_females_carcasses_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060678
9x140_testes_total
 SRR060680
 9xArg_testes_total
 SRR1106729
mixed whole adult body
 V116
male body		 SRR060672
9x160_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 M061
embryo
 V047
embryo
 SRR060655
9x160_testes_total
 SRR060683
160_testes_total
 SRR060665
9_females_carcasses_total
......................................................................................................................................................................................................................................................................................................................GATGATAACTGGAATAGAGGATGTT.......................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................GTTGGCGAAGCCTTCTCCCAC........ 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CATTGGCCAGTTTCCAGGTAA................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................GATGATAACTGGAATAGAGGAT............................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................ATAGAGGATGTTGGCGAAGCCTTCT............. 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................AGATGATAACTGGAATAG.................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGTGCGTGTGTGTGTGGGTGTC................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................GTCTTGGAATTGCAATCATTTTGAATGC.................................................................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................TTGTCATTCGATGTCACAGATGA.............................................. 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................AGATGATAACTGGAATAGAGGATGTT.......................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................CAAAGAAGAAACATTGGCCAGT............................................................................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................CAAAGAAGAAACATTGGCCAGTTTCCA........................................................................................................................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................TTTCCAGGTAAGAAACGCAGC......................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................ACTGGAAAAGAGGGTGTTG......................... 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........GGACATCCAGGAGAAAGAA............................................................................................................................................................................................................................................................................................................................................ 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................TGCGATCATTTTGAATGCTGAC.............................................................................. 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........GACCACCAGGAGAAAGAA............................................................................................................................................................................................................................................................................................................................................ 18 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........AGGACAACCAAGAAAAAGAAGAA......................................................................................................................................................................................................................................................................................................................................... 23 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TGCCTGTGTGTGTGGGTGTC................................................................................................................. 20 1 16 0.13 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0
.........................................................................................................................................................................................AAGTGGGAAAGTATGTGTG............................................................................................................................................................. 19 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................GGTGTGTGTGCGTGTGTGTGT........................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AACCAAGACAAAGAATAAA........................................................................................................................................................................................................................................................................................................................................ 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTGATTACAGCCTGTTGGTCCTGTTTCTTCTTTGTAACCGGTCAAAGGTCCATTCTTTGCGTCGTAGCTATAGGGCGATCTGCGACGTTTGAAGACAATAATAAACACCGGGTTTGCTCACGACTCACGCGTGTAAAAGTTACGCATACAACACACATACACACACACACACACATACTCGAACGTTCACGCTTTCACACACACCCACACGCTCATACCCCCACACACACGCACACACACACCCACAGACGCAGAACCTTAACGTTAGTAAAACTTACGTTTGTTTTGAGTTAACTATAAGTTACAGTGTCTACTATTGACCTTATCTCCTACAACCGCTTCGGAAGAGGGTGGACCTCCG
**************************************************.(((((..((((.....((((((((((((.((((((((.((((((((....((((((.(((((.(((...(((..((((((((((.....((((((((.......))))))))....)))))))))).)))((((....)))).....))).)))))..)))))))))))))).)))).)))).)).))).))))))))))))))))...(((((.(((...))).)))))............((((((...))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR060686
Argx9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
................................................................................................................................................................................................................................................................................................................................................CGCTGCGGAAGAGGATGGCC..... 20 3 3 0.33 1 1 0 0
..............................................................CGTAGCCATAGGGCGACCTGT...................................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 1 0
........................................................TCGTGTCGTAGCTAAAGGGC............................................................................................................................................................................................................................................................................................. 20 3 9 0.11 1 1 0 0
................................................................................TGCGAAGTTTGGAGACTAT...................................................................................................................................................................................................................................................................... 19 3 15 0.07 1 0 0 1
.........................................................TTCGTCATAGTTATAGGGC............................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0
.........................................................GTCGTCGTAGCTACAGGGC............................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:17355549-17355909 - dvi_7480 CAC-----------------TAATGTCGGACAACCAGGACAAAGAAGAAACATTGGCCAGTTTCCAGGTAAGAAACGCAGCATCGATA--TCCCGC--T---------AGACGCTGCAAACTTCTGTTATTATTTGTG-GCCCA--AACGA--GTGCTG----------AGTGCGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTT----CAATGCGTATGTTGTGTGT--------------------------------------------------------------------------ATGTG----------T---------GT------------------------------------GTGTGTGTGT--ATGAGCTTGCAAGTGCGAAAGTGT--GTGTG--------------G-----------------GTGTGC-----------GAGTATGGGGG------TGTGTGTGCGTGTGTGTG-------------TGGG-------------------------------------TGTCTGCGTCTTGG---AATTGCAATCATTTTGA-ATGCAAACAA-----------------AACTCAATTGA-------------------------TATTCAATG----TCACAGATGATAACTGGAATAGAGGATGTTGGCGAAG--------------------------------------------------------------CCTTCTCCCACCTGGAGGC
droMoj3 scaffold_6496:10654781-10655129 + CAC-----------------TAATGTCGGACAACCAGGACAAAGAAGAAACATTGGCCAGTTTCCAGGTAAGAAATACAGCATCAATT----GACCA-TC--------AGACGCAGCAAACTTCTGTTATTATTTGTG-GCCCA--AACGA--GTGCTG----------AGTGCGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTC----CAATGCGTGTGTTGTG--------------------------------------------------------------------------------------------T---------GTGTC----------------------------------TCA--------CTCTGTGTGTGT---------------------------------------------------GTGTGC-----------AAGTAAGGGAGTACACGTATGTGTGT------GT-------------GTGCTTATGTGCCTATGTG-------------------TAGATGTCTGCGTCTTGG---ACTTGCAATCAGTTTGA-ATGCAAACAAA-----------------ACTACATTTT-------------------------AATTCAATG----TCATAGATCATAACTGGAATAGAGGATGTTGGCGAGG--------------------------------------------------------------CCTTCTCCCACCTGGAGTC
droGri2 scaffold_15245:16873197-16873599 - CAC-----------------TAATGTCGGACAACCAAGACAAAGAAGAAACATTGGCCAGTTTCCAGGTAAGGAACGCATCATCGATA--TTGCCCA-----------AGACGCTGCAAACTTCTGTTATTATTTGTGGGCCCAAAAACGAGAGTGCTG----------AGTGCGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTT----CAATGCGTATGT---------------TTTTCT--------------------------------------------------------GTGTATGTATGTATGAGTGT---------TT----GTC------------------------------TCT--CTC----------TATGAGT------------------------GTGTGTGTTT---------------G-----CGAGTCACTGTGAGGGTGTGCG------TGTGTGTGT--GTCTGTG-----------TGTGCATATG---TTTTATGTGT-----------TTGTGTAGGTGTCTACGTCTTGG---GCTTGCAATCATTTCCAAATGCAAACAAAAA-AAGA---------AACTCAATTG--------------------AA----TTTTCAATG----TCACAGATCATAACTGGCATAGACGATGTCGGCGAGG--------------------------------------------------------------CCTTCTCTCACCTGGAGGC
droWil2 scf2_1100000004401:342314-342506 + GGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGATTGAATAAGCATGCCGCCAGCCACCGCCACCGACATCAACTTTTGCTTGTGCCATG-AATC-----------------GTTTG----TGTGTGTGTGTG-------------------------------------------------------------------------------------T----G-----------TGT--------------------------------------------------------------------GTGTGTGTGTG----------T---------GT------------------------------------------GTG--TGTGTGTGTGTGTGTGTGT--GTGTGTGT--G-----T-----------GTGTGTGTGTGTGTG------TGT------------------G------TGTGTGTGTGTGTGTGTGTGTGTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGT
dp5 3:16349592-16349884 - GGCACCCCCGCAAGCACGTATAATGTCGGAGAA------CAAGGACGAGACCCTGGCCAGTTTCCAGGTAAATTACTCTGGCCA--CGTCCC-CCCGAGAATCACGAG---------AAACTTCTGTGATTATTT----------------------------------TATGCGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTT----CGGTGCGTGTGTGCTGTG------TGT--TC--GCTGTGTGTGGGTGACGTTGTGTGGGATATTT---TTCTCGGACTAACTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGTAATG-------CGAG------------------TGTTC---CCCCTTT-CATGGTATTCGCAGAACATAACTGGCATCGACGATGTCGGAGAGG--------------------------------------------------------------CCTTCTCCCACCTGGAGGC
droPer2 scaffold_4:413541-413833 + GGCAGCCCCGCAACCACTTATAATGTCGGAGAA------CAAGGACGAGACCCTGGCCAGTTTCCAGGTAAAGTACTCTGGCCA--CGTCCC-CCCGAGAATCACGAG---------AAACTTCTGTGATTATTT----------------------------------TATGCGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTT----CGGTGCGTGTGTGCTGTG------TGT--TC--GCTGTGTGTGGGTGACGTTGTGTGGGATAGTT---TTCTCGGATTAACTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGTAATG-------CGAG------------------TGTTC---CCCCTTT-CATGGTATTCGCAGAACATAACTGGCATCGACGATGTCGGAGAAG--------------------------------------------------------------CCTTCTCCCACCTGGAGGC
droAna3 scaffold_13266:15477439-15477685 + CC-------------------AATGTCGGAGAA------TAAGGAAGAAACACTCGCCAGTTTTCAGGTAAAGTAA--TGCATAAATG--CCCT----GCATAAACAG--------------------------------------------AGAACTCAGCCAGATTCGCTGCGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATT-------GATGCGTAT-------------------TTTTG--GTGTATGGGTGACTTTAAG-GGGATAAACTCT-ATTCGTACTAAT----AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACATT--------------A------TTTTGATTTAAAC----------TATGTG--------TTTTTAGAACATCACAGGCATTGACGATGTCGGCGAAG--------------------------------------------------------------CCTTCTCCCATCTGGAGGC
droBip1 scf7180000396547:1569886-1570137 - TGTC----------------CAATGTCGGAGAA------CAAGGAAGAAACACTCGCCAGTTTTCAGGTAAGGCCA--TCCATAAATG--CCCA----GCATAAACAG--------------------------------------------AGAACTCAGCAAGATTCGCTGCGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATT-------GATGCGTAT-------------------TGTTC--GTGTATGGGTGACTTTCTG-GGAATAAACTCTTTTTCGTACTAAT----AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAG--------------TACTA------TTTTGTTTTAAAC----------TATGTG------TA-TTTTAGAACATCACAGGCATTGACGATGTCGGCGAAG--------------------------------------------------------------CCTTCTCCCATCTGGAGGC
droKik1 scf7180000302621:392403-392603 + TTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTGTGTG----TGTGTG-------------------------------------------------------------------------------------T----G-----------TGT--------------------------------------------------------------------GTGTGTGTGTG----------T---------GT--------------------------------------------GTGTGTGTGTGTGTGTGTGTGT--GTGTGTGT--G-----T-----------GTGTGTGTGTGTGTG------TGT------------------G------TGTGTGTGTGTGTGTGTGTGTGTGTGTGT-----------------GTGTGT-----------GTG-------------------------------------------------------------------------------------------------------------------------------------------------------CAG-----TAATAACAGGCAGTATCAACATTTTCCAGCTCTATAGAATGCAATGAATACCCACTGTATATATATGCTAA-----
droFic1 scf7180000453829:294766-294938 - ATTTAA---------------------------------------------------------------------------------A--TTGCGC--T---------AAAAATCGCACGCTATTATTATTATTTATT-ATGTA--AGCAA--TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC----------TG--------------------------------------------------------GCATTTTTGTGCACACTGTTGT---------TG----GTT------------------------------T----------ATGTG--TGTGTGT------------------------GTGTGTGTGT---------------G-----TGTGTGTGTACGAGTATGTGCG------CCTGTGTGTGTGTTTTTG-------------TGGGTGGC---CTTTGTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTG
droEle1 scf7180000491006:298132-298350 - CATTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGCACCTGTGCAGGAAGCCCAGCAGCGGCGCTAGCAAACTCATGCAGCCAAAATGGGAGCAACGTGCCGTATGCGTAATATTAGCGCATT-AATAT----G--T--GCCACAGTCAT------------------------------------------------------------------GTGTGTTTGTA----------T---------GTGTTTGG------------------------------------------CTCAGTGTGTGTGTGTGT----GCGTGC--G-----TG---------TGTGGCT--------------------------TAGTGTGCGTG------CTTGTGGGAGTGTGTGTGTGTGTGTGTGT-----------------GTGAGT-----------CTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779872:341200-341367 - GTGACCAACAC---------TTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTATGTAC--------------------------------------------------------------------GTATTTGCGGGTT-GATGT----G-----------TGT--------------------------------------------------------------------GTGTGTGTGTG----------T---------GT------------------------------------------GTGT--GTGTGTGTGTGTGTGTGT--GTGTGTGTGTG--------------T----GTGTGTGTGTGTG------TGT------------------G------TGTGTGTGTGTGTGTGTGTGTGTGTGTG---------------------CGT-----------GTG--------------G-GTACTCTGATTA-----------------------------------------------------------------------------------------------------------------------------GAGCAGCA-------------------------------------------------------------------------A
droBia1 scf7180000301760:297550-297744 - CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTAAGAAAACACCAACAACATGGCACAGCGGTAAGTTATTG-------------------------------------------TTGTT----GT--TCCGATCAAGATCAAGGCTTTCAGTTTATGTGT----GTG-------------------------------------------------------------------------------------T----T-----------CGA--------------------------------------------------------------------TGGCGTGGGCG----------T---------GT--------------------------------------------GTGTGTGTGTGTGTGTGTGTGT--GTGTGTGT--G-----T-----------GTGTGTGTGTGTGTG------TGT------------------A------TGTGTGTGTGTGTGTGTGTGTGTGTGTGT-----------------GTGTGT-----------GTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415795:647363-647527 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATT-G----CGATGCGTGTGC---------------GTTTTTGACGTGTGTGGGTGACTTTG--GCAGATAGTTTCAATATCGAGCTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAACTATT------------------------------------------------------------------------------------------------------------------------------TATTTT-------A-----------TA-----------ATG---TCTTTATCCT------CATCTGCAGAACATCACGGGCATCGACGATGTGGGCGAGG--------------------------------------------------------------CCTTCTCCCACCTGGAGGC
droEug1 scf7180000409110:388444-388597 - ATCCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----------------------------------------------------------------------------------------AG-T----CTATGTGTGTG-----TGT----------------------------------------------------------------------------GTG----------T---------TT----GT------------------------------GTGTGTGTG------------TGTGT--------GT--GT--G------------TGT-----------------GTGTGT-----------GAGTGTGCGGG------TGTTTGAGTGTGAGGGT-------------GTGCTTG------------TGT-----------GTG--------------A-TTGGCACGCTTGAAAATACTTTGACAGGTCACCACAAA---------AATT-AATTGATA--------------------------------------------------------------------------------------------------------------------------------------------------------------T
dm3 chrUextra:26944325-26944520 + TGTGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG----TGTGTG-------------------------------------------------------------------------------------T----G-------------T--------------------------------------------------------------------GTGTGTGTGTG----------T---------GT------------------------------------------GTGTGTGTGTGTGTGTGTGTGTGT--GTGT--GTGTG--------------T--GTGTGTGT------------------GTGTGTGT--------G------TGTGTGTGTGTGTGTGTGTGTGTGTGTG---------------------TGT-----------GTG--------------G-TTGGTGTGGTTA----------------TAAATATAAT---------A------ATTAA------------------TGTTT---TTCTCTC-TATG----TTCTAGAACTTAATTGC--TTAAGGACGCTGCTGAAG---------------------------------------------------------------------------------
droSim2 2r:12580957-12581111 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATT-G----CGATGCGTGTGC---------------GTTTTTG--GTGTATGGGTGACTTTG--GCAGATAGCTCCAATATCGAACTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGG---------TACTAAATG-----------------G---TCTTTATGCT------CATCCGCAGAGCATTACGGGCATCGACGATGTGGGCGAAG--------------------------------------------------------------CCTTTTCACACTTGGAGGC
droSec2 scaffold_8:2562263-2562418 - TGTTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------------------------------------------------------------------------------TG-T----T-----------------------------------------------------------------------------------------------------------TACTCCAAAAGTGTTTGG-TTTGTTTATTCATTCTGGATCCGCTGGTG-T----GTGTGTGTGTGTGTGTGTGTGTGT--GTGT--GTGTG--------------T--GTGTGTGT------------------------GTGTGTGT--G------TGTGTGTGTGTGTGTGTG-----------TGTGCCTTTC----------TTTTTTGGAGGTATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droYak3 X:11994262-11994437 + ACAT---------------------------------------------------------------------------------------------------------------------TTTTGTTGTTGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTGGCTATGTGT--GCTG-----------------------------------------------------------------TT----------T---------GTGT------------------------------------------GT--GGGCGGAAGTTCGCGTGCCATTGTGTGT--GTGTAT--GTGTGTGTGT---------------G-----CGGGTGTGTGCGGGTGTGTGCG------GGTGTGTGC--GTGGGTG-----------TGTGCAAAAG---TTTTACG-----------------------------------------------------------AGCAAACCG-----------------AACTGACATGT-------------------------TAATTATTT----T--------------------------------------------------------------------------------------------------------------------C
droEre2 scaffold_4845:13942913-13943176 + AAGCGAACCACAAACGTTTCCAATGTCGGAGAA------CAAGGAAGAGACCCTGGCCAGTTTTCAGGTAATG--CTCTTCATAGATC--TCCCCCGAAAA-CACCCT---------CAATTTC---------------------------------------------GCTGCGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATT-G----CGATGCGTGTGC---------------GTTTTTG--GTGTGTGGGTGACTTTG--GCAGATAGTTCCAATATCGAACTATTACTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGGT-------A-----------TA-----------TGG---TCTTTATGCT------CATCCGCAGAGCATCACGGGAATTGACGATGTGGGTGAAG--------------------------------------------------------------CCTTTGCCCACTTGGAGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAC-----------------TAATGTCGGACAACCAGGACAAAGAAGAAACATTGGCCAGTTTCCAGGTAAGAAACGCAGCATCGATA--TCCCGC--T---------AGACGCTGCAAACTTCTGTTATTATTTGTG-GCCCA--AACGA--GTGCTG----------AGTGCGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTT----CAATGCGTATGTTGTGTGT--------------------------------------------------------------------------ATGTG----------T---------GT------------------------------------GTGTGTGTGT--ATGAGCTTGCAAGTGCGAAAGTGT--GTGTG--------------G-----------------GTGTGC-----------GAGTATGGGGG------TGTGTGTGCGTGTGTGTG-------------TGGG-------------------------------------TGTCTGCGTCTTGG---AATTGCAATCATTTTGA-ATGCAAACAA-----------------AACTCAATTGA-------------------------TATTCAATG----TCACAGATGATAACTGGAATAGAGGATGTTGGCGAAG--------------------------------------------------------------CCTTCTCCCACCTGGAGGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATAACTGGAATAGAGGATGTT........................................................................................2512.002000000020000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCGAAG--------------------------------------------------------------CCTTCTCCCAC........2112.002000000000000000000000000000000000000000000000000000000000000002
..................................................CATTGGCCAGTTTCCAGGTAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATAACTGGAATAGAGGAT...........................................................................................2211.001000000000100000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAGGATGTTGGCGAAG--------------------------------------------------------------CCTTCT.............2511.001000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATAACTGGAATAG................................................................................................1811.001000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCGTGTGTGTG-------------TGGG-------------------------------------TGTC.................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGG---AATTGCAATCATTTTGA-ATGC..............................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATAACTGGAATAGAGGATGTT........................................................................................2611.001000000000001000000000000000000000000000000000000000000000000000
.......................................CAAAGAAGAAACATTGGCCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
.......................................CAAAGAAGAAACATTGGCCAGTTTCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
............................................................TTTCCAGGTAAGAAACGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------TGTGTGTGCGTGTGTGTG-------------T.............................................................................................................................................................................................................................................................................21200.051000000010000000000000000000000000000000000000000000000000000000
droMoj3
CAC-----------------TAATGTCGGACAACCAGGACAAAGAAGAAACATTGGCCAGTTTCCAGGTAAGAAATACAGCATCAATT----GACCA-TC--------AGACGCAGCAAACTTCTGTTATTATTTGTG-GCCCA--AACGA--GTGCTG----------AGTGCGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTC----CAATGCGTGTGTTGTG--------------------------------------------------------------------------------------------T---------GTGTC----------------------------------TCA--------CTCTGTGTGTGT---------------------------------------------------GTGTGC-----------AAGTAAGGGAGTACACGTATGTGTGT------GT-------------GTGCTTATGTGCCTATGTG-------------------TAGATGTCTGCGTCTTGG---ACTTGCAATCAGTTTGA-ATGCAAACAAA-----------------ACTACATTTT-------------------------AATTCAATG----TCATAGATCATAACTGGAATAGAGGATGTTGGCGAGG--------------------------------------------------------------CCTTCTCCCACCTGGAGTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CAC-----------------TAATGTCGGACAACCAAGACAAAGAAGAAACATTGGCCAGTTTCCAGGTAAGGAACGCATCATCGATA--TTGCCCA-----------AGACGCTGCAAACTTCTGTTATTATTTGTGGGCCCAAAAACGAGAGTGCTG----------AGTGCGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTT----CAATGCGTATGT---------------TTTTCT--------------------------------------------------------GTGTATGTATGTATGAGTGT---------TT----GTC------------------------------TCT--CTC----------TATGAGT------------------------GTGTGTGTTT---------------G-----CGAGTCACTGTGAGGGTGTGCG------TGTGTGTGT--GTCTGTG-----------TGTGCATATG---TTTTATGTGT-----------TTGTGTAGGTGTCTACGTCTTGG---GCTTGCAATCATTTCCAAATGCAAACAAAAA-AAGA---------AACTCAATTG--------------------AA----TTTTCAATG----TCACAGATCATAACTGGCATAGACGATGTCGGCGAGG--------------------------------------------------------------CCTTCTCTCACCTGGAGGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGATTGAATAAGCATGCCGCCAGCCACCGCCACCGACATCAACTTTTGCTTGTGCCATG-AATC-----------------GTTTG----TGTGTGTGTGTG-------------------------------------------------------------------------------------T----G-----------TGT--------------------------------------------------------------------GTGTGTGTGTG----------T---------GT------------------------------------------GTG--TGTGTGTGTGTGTGTGTGT--GTGTGTGT--G-----T-----------GTGTGTGTGTGTGTG------TGT------------------G------TGTGTGTGTGTGTGTGTGTGTGTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................TGT--------------------------------------------------------------------GTGTGTGTGTG----------T---------GT------------------------------------------GTG--...............................................................................................................................................................................................................................................................................................................................................................................................................20200.20404000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG----------T---------GT------------------------------------------GTG--TGTGTGTGTGTGTGT................................................................................................................................................................................................................................................................................................................................................................................................24200.15300003
..................................................................................................................................................................................................................................................................................................GTTTG----TGTGTGTGTGTG-------------------------------------------------------------------------------------T----G-----------TGT--------------------------------------------------------------------GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100100
dp5
GGCACCCCCGCAAGCACGTATAATGTCGGAGAA------CAAGGACGAGACCCTGGCCAGTTTCCAGGTAAATTACTCTGGCCA--CGTCCC-CCCGAGAATCACGAG---------AAACTTCTGTGATTATTT----------------------------------TATGCGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTT----CGGTGCGTGTGTGCTGTG------TGT--TC--GCTGTGTGTGGGTGACGTTGTGTGGGATATTT---TTCTCGGACTAACTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGTAATG-------CGAG------------------TGTTC---CCCCTTT-CATGGTATTCGCAGAACATAACTGGCATCGACGATGTCGGAGAGG--------------------------------------------------------------CCTTCTCCCACCTGGAGGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................ATAATGTCGGAGAA------CAAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000020
...............ACGTATAATGTCGGAGAA------CAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000020
.....................AATGTCGGAGAA------CAAGGACGAGACCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001000000
............................GAGAA------CAAGGACGAGACCCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
.........GCAAGCACGTATAATGTCGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
............................GAGAA------CAAGGACGAGACCCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000010
..................TATAATGTCGGAGAA------CAAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACGATGTCGGAGAGG--------------------------------------------------------------CCT................2211.0010100000000
.......................................CAAGGACGAGACCCTGGCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000000
...................ATAATGTCGGAGAA------CAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGATGTCGGAGAGG--------------------------------------------------------------C..................1811.0010100000000
.................GTATAATGTCGGAGAA------CAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
...................ATAATGTCGGAGAA------CAAGGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
........................................AAGGACGAGACCCTGGCCAGTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAACTGGCATCGACGATGTC........................................................................................2211.0010100000000
....................TAATGTCGGAGAA------CAAGGACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
....................TAATGTCGGAGAA------CAAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000010
.............................AGAA------CAAGGACGAGACCCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
droPer2
GGCAGCCCCGCAACCACTTATAATGTCGGAGAA------CAAGGACGAGACCCTGGCCAGTTTCCAGGTAAAGTACTCTGGCCA--CGTCCC-CCCGAGAATCACGAG---------AAACTTCTGTGATTATTT----------------------------------TATGCGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTT----CGGTGCGTGTGTGCTGTG------TGT--TC--GCTGTGTGTGGGTGACGTTGTGTGGGATAGTT---TTCTCGGATTAACTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGTAATG-------CGAG------------------TGTTC---CCCCTTT-CATGGTATTCGCAGAACATAACTGGCATCGACGATGTCGGAGAAG--------------------------------------------------------------CCTTCTCCCACCTGGAGGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................AAGGACGAGACCCTGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003300000
........................GTCGGAGAA------CAAGGACGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
....................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGCTGTG------TGT--TC--GCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...............................AA------CAAGGACGAGACCCTGGCCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.......................TGTCGGAGAA------CAAGGACGAGACCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
droAna3
CC-------------------AATGTCGGAGAA------TAAGGAAGAAACACTCGCCAGTTTTCAGGTAAAGTAA--TGCATAAATG--CCCT----GCATAAACAG--------------------------------------------AGAACTCAGCCAGATTCGCTGCGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATT-------GATGCGTAT-------------------TTTTG--GTGTATGGGTGACTTTAAG-GGGATAAACTCT-ATTCGTACTAAT----AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACATT--------------A------TTTTGATTTAAAC----------TATGTG--------TTTTTAGAACATCACAGGCATTGACGATGTCGGCGAAG--------------------------------------------------------------CCTTCTCCCATCTGGAGGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TGTC----------------CAATGTCGGAGAA------CAAGGAAGAAACACTCGCCAGTTTTCAGGTAAGGCCA--TCCATAAATG--CCCA----GCATAAACAG--------------------------------------------AGAACTCAGCAAGATTCGCTGCGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATT-------GATGCGTAT-------------------TGTTC--GTGTATGGGTGACTTTCTG-GGAATAAACTCTTTTTCGTACTAAT----AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAG--------------TACTA------TTTTGTTTTAAAC----------TATGTG------TA-TTTTAGAACATCACAGGCATTGACGATGTCGGCGAAG--------------------------------------------------------------CCTTCTCCCATCTGGAGGCSizeHit CountTotal NormTotal
No Reads
droKik1
TTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTGTGTG----TGTGTG-------------------------------------------------------------------------------------T----G-----------TGT--------------------------------------------------------------------GTGTGTGTGTG----------T---------GT--------------------------------------------GTGTGTGTGTGTGTGTGTGTGT--GTGTGTGT--G-----T-----------GTGTGTGTGTGTGTG------TGT------------------G------TGTGTGTGTGTGTGTGTGTGTGTGTGTGT-----------------GTGTGT-----------GTG-------------------------------------------------------------------------------------------------------------------------------------------------------CAG-----TAATAACAGGCAGTATCAACATTTTCCAGCTCTATAGAATGCAATGAATACCCACTGTATATATATGCTAA-----SizeHit CountTotal NormTotal
No Reads
droFic1
ATTTAA---------------------------------------------------------------------------------A--TTGCGC--T---------AAAAATCGCACGCTATTATTATTATTTATT-ATGTA--AGCAA--TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC----------TG--------------------------------------------------------GCATTTTTGTGCACACTGTTGT---------TG----GTT------------------------------T----------ATGTG--TGTGTGT------------------------GTGTGTGTGT---------------G-----TGTGTGTGTACGAGTATGTGCG------CCTGTGTGTGTGTTTTTG-------------TGGGTGGC---CTTTGTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTGSizeHit CountTotal NormTotal
No Reads
droEle1
CATTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGCACCTGTGCAGGAAGCCCAGCAGCGGCGCTAGCAAACTCATGCAGCCAAAATGGGAGCAACGTGCCGTATGCGTAATATTAGCGCATT-AATAT----G--T--GCCACAGTCAT------------------------------------------------------------------GTGTGTTTGTA----------T---------GTGTTTGG------------------------------------------CTCAGTGTGTGTGTGTGT----GCGTGC--G-----TG---------TGTGGCT--------------------------TAGTGTGCGTG------CTTGTGGGAGTGTGTGTGTGTGTGTGTGT-----------------GTGAGT-----------CTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GTGACCAACAC---------TTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTATGTAC--------------------------------------------------------------------GTATTTGCGGGTT-GATGT----G-----------TGT--------------------------------------------------------------------GTGTGTGTGTG----------T---------GT------------------------------------------GTGT--GTGTGTGTGTGTGTGTGT--GTGTGTGTGTG--------------T----GTGTGTGTGTGTG------TGT------------------G------TGTGTGTGTGTGTGTGTGTGTGTGTGTG---------------------CGT-----------GTG--------------G-GTACTCTGATTA-----------------------------------------------------------------------------------------------------------------------------GAGCAGCA-------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droBia1
CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTAAGAAAACACCAACAACATGGCACAGCGGTAAGTTATTG-------------------------------------------TTGTT----GT--TCCGATCAAGATCAAGGCTTTCAGTTTATGTGT----GTG-------------------------------------------------------------------------------------T----T-----------CGA--------------------------------------------------------------------TGGCGTGGGCG----------T---------GT--------------------------------------------GTGTGTGTGTGTGTGTGTGTGT--GTGTGTGT--G-----T-----------GTGTGTGTGTGTGTG------TGT------------------A------TGTGTGTGTGTGTGTGTGTGTGTGTGTGT-----------------GTGTGT-----------GTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATT-G----CGATGCGTGTGC---------------GTTTTTGACGTGTGTGGGTGACTTTG--GCAGATAGTTTCAATATCGAGCTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAACTATT------------------------------------------------------------------------------------------------------------------------------TATTTT-------A-----------TA-----------ATG---TCTTTATCCT------CATCTGCAGAACATCACGGGCATCGACGATGTGGGCGAGG--------------------------------------------------------------CCTTCTCCCACCTGGAGGCSizeHit CountTotal NormTotal
No Reads
droEug1
ATCCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----------------------------------------------------------------------------------------AG-T----CTATGTGTGTG-----TGT----------------------------------------------------------------------------GTG----------T---------TT----GT------------------------------GTGTGTGTG------------TGTGT--------GT--GT--G------------TGT-----------------GTGTGT-----------GAGTGTGCGGG------TGTTTGAGTGTGAGGGT-------------GTGCTTG------------TGT-----------GTG--------------A-TTGGCACGCTTGAAAATACTTTGACAGGTCACCACAAA---------AATT-AATTGATA--------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
dm3
TGTGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG----TGTGTG-------------------------------------------------------------------------------------T----G-------------T--------------------------------------------------------------------GTGTGTGTGTG----------T---------GT------------------------------------------GTGTGTGTGTGTGTGTGTGTGTGT--GTGT--GTGTG--------------T--GTGTGTGT------------------GTGTGTGT--------G------TGTGTGTGTGTGTGTGTGTGTGTGTGTG---------------------TGT-----------GTG--------------G-TTGGTGTGGTTA----------------TAAATATAAT---------A------ATTAA------------------TGTTT---TTCTCTC-TATG----TTCTAGAACTTAATTGC--TTAAGGACGCTGCTGAAG---------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGC--TTAAGGACGCTGCTGAAG---------------------------------------------------------------------------------2421.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTAATTGC--TTAAGGACGCTG.......................................................................................2221.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTG---------------------TGT-----------GTG--------------G-T..........................................................................................................................................................................................................................20200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGC--TTAAGGACGCTGC......................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------A------ATTAA------------------TGTTT---TTCTCTC-TATG----TTC...................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAA------------------TGTTT---TTCTCTC-TATG----TTCTA.................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC--TTAAGGACGCTGCTGAA..................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTAATTGC--TTAAGGACGCTGC......................................................................................2420.5010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGC--TTAAGGACGCTGCTGAA..................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAT---------A------ATTAA------------------TGTTT---TTCTCTC-TA............................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTG---------------------TGT-----------GTG--------------G-TTGGTG.....................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTT---TTCTCTC-TATG----TTCTAGAACT............................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA------------------TGTTT---TTCTCTC-TATG----TT....................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAT---------A------ATTAA------------------TGTTT---TTCTCTC-TATG----......................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------GTG--------------G-TTGGTGTGGTTA----------------TAA............................................................................................................................................................................................2020.5010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAGAACTTAATTGC--TTAAGGACGCT........................................................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG---------------------TGT-----------GTG--------------G-TTGGTGTG...................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG---------------------TGT-----------GTG--------------G-TTGGTGTGG..................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATAAT---------A------ATTAA------------------TGTTT---TTCTCTC-TA............................................................................................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTG---------------------TGT-----------GTG--------------G-TTGGTGTGGT.................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--------------G-TTGGTGTGGTTA----------------TAAATATAAT---------A------AT...................................................................................................................................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACGATGTGGGCGAAG--------------------------------------------------------------C..................2012.00202000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTTTG--GCAGATAGCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200200000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAATATCGAACTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A...................................................................................................................................................................................1811.00110000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTGACTTTG--GCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1690.22200000000020000000
droSec2
TGTTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------------------------------------------------------------------------------TG-T----T-----------------------------------------------------------------------------------------------------------TACTCCAAAAGTGTTTGG-TTTGTTTATTCATTCTGGATCCGCTGGTG-T----GTGTGTGTGTGTGTGTGTGTGTGT--GTGT--GTGTG--------------T--GTGTGTGT------------------------GTGTGTGT--G------TGTGTGTGTGTGTGTGTG-----------TGTGCCTTTC----------TTTTTTGGAGGTATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--G------TGTGTGTGTGTGTGTGTG-----------TGTGCC..........................................................................................................................................................................................................................................................................2690.3330210
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTGTGTGTGTGT--GT........................................................................................................................................................................................................................................................................................................................................................................................24200.1020200
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGTGTGTG-----------TGTGCC..........................................................................................................................................................................................................................................................................24160.0611000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTG-T----GTGTGTGTGTGTGTGTGTGT................................................................................................................................................................................................................................................................................................................................................................................................25160.0610100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--G------TGTGTGTGTGTGTGTGTG-----------TGTGC...........................................................................................................................................................................................................................................................................25200.0510100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGTGTGTG-----------TGTGCCTA........................................................................................................................................................................................................................................................................26200.0510100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTGT--GTGT--G...................................................................................................................................................................................................................................................................................................................................................................................19200.0510001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGTGTGTGTGTG.............................................................................................................................................................................................................................................................................................................................................................................................22200.0510010
droYak3
ACAT---------------------------------------------------------------------------------------------------------------------TTTTGTTGTTGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTGGCTATGTGT--GCTG-----------------------------------------------------------------TT----------T---------GTGT------------------------------------------GT--GGGCGGAAGTTCGCGTGCCATTGTGTGT--GTGTAT--GTGTGTGTGT---------------G-----CGGGTGTGTGCGGGTGTGTGCG------GGTGTGTGC--GTGGGTG-----------TGTGCAAAAG---TTTTACG-----------------------------------------------------------AGCAAACCG-----------------AACTGACATGT-------------------------TAATTATTT----T--------------------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AAGCGAACCACAAACGTTTCCAATGTCGGAGAA------CAAGGAAGAGACCCTGGCCAGTTTTCAGGTAATG--CTCTTCATAGATC--TCCCCCGAAAA-CACCCT---------CAATTTC---------------------------------------------GCTGCGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATT-G----CGATGCGTGTGC---------------GTTTTTG--GTGTGTGGGTGACTTTG--GCAGATAGTTCCAATATCGAACTATTACTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGGT-------A-----------TA-----------TGG---TCTTTATGCT------CATCCGCAGAGCATCACGGGAATTGACGATGTGGGTGAAG--------------------------------------------------------------CCTTTGCCCACTTGGAGGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACGGGAATTGACGATGTG........................................................................................2113.0030001110
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGGGTGAAG--------------------------------------------------------------CCTTTGCC...........2111.0010000100
....................CAATGTCGGAGAA------CAAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGGGAATTGACGATGTGGGT.....................................................................................2311.0011000000

Generated: 05/17/2015 at 04:56 AM