ID:

dvi_7411

 Coordinate:

scaffold_12875:17113883-17114033 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_5560:6]; CDS [Dvir\GJ20103-cds]; intron [Dvir\GJ20103-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAACAAATTTGCATAAATAATTTGTAATTTAATCAACCGTAATTTGAAATGCATAATTTTGTTGACTAACAAAACGCCCAACGACCAAATGGGCGGCCACAACGAACATCACCGACCCAACGTATACACTACGATCACCACAAACCACACAAAACAATCCTTGTTGTTGTTGTTGTTGTTGTTGCACGCCTTTCTCTATAGCCTTTCCATTTTTGGTAGATGACACTAAAATGGAAGTCGACTCGCCAACG
**************************************************......(((((((....)))))))((((((.........))))))((.(((((.((((.((.((((....((((.....))))...................(((((...))))))))).)).))))))))).))................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060686
Argx9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 M047
female body
 SRR060685
9xArg_0-2h_embryos_total
 V116
male body		 SRR060658
140_ovaries_total
 SRR060687
9_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 SRR060666
160_males_carcasses_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060679
140x9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060659
Argentina_testes_total
 SRR060668
160x9_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 V053
head
 SRR060664
9_males_carcasses_total
.....................................CGTAATGTGAATTGCAGAATT................................................................................................................................................................................................. 21 3 5 6.00 30 0 0 1 1 5 0 3 1 6 0 4 2 2 1 1 1 1 1 0 0
.........................................................................................................................................................................................................................AGATGACACTAAAATGGAAGT............. 21 0 1 3.00 3 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ACACTAAAATGGAAGTCGA.......... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GGTAGATGACACTAAAATGGAAGTC............ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GATGACACTAAAATGGAAGTCGACTC....... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CAACCGTAATTTGAAATGCATA.................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................AAAGGGGCGGCCACAACCAACAA.............................................................................................................................................. 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTAAAATGGAAGTCGACT........ 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GGTAGATGACACTAAAATGGAAGT............. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTTGGTAGATGACACTAAAAT................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AAAATGGAAGTCGACTCG...... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGATGACACTAAAATGGAAGTCGACT........ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................ACTAAAATGGAAGTCGACT........ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGATGACACTAAAATGGA................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GACGATGACACTAAAATGGAAGTC............ 24 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GGTAGATGACACTAAAATGGAAGTCGA.......... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ATTTTTGGTAGATGACACTAAA..................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AATCATCCGTAATTTAAAA.......................................................................................................................................................................................................... 19 2 16 0.44 7 0 0 0 0 0 0 1 0 0 0 2 0 3 0 0 0 0 0 0 1
..........................................................................................................................TCTACACGACGATCACCA............................................................................................................... 18 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGGTAGAAGAGACTAAAA.................... 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................CTTGTCGTTGGTGTTGCACGCC............................................................. 22 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................TTGTTGTTGTTGTTGCGCGCCTTG.......................................................... 24 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AACCATCCGTAATTTGAAAA......................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

TTTGTTTAAACGTATTTATTAAACATTAAATTAGTTGGCATTAAACTTTACGTATTAAAACAACTGATTGTTTTGCGGGTTGCTGGTTTACCCGCCGGTGTTGCTTGTAGTGGCTGGGTTGCATATGTGATGCTAGTGGTGTTTGGTGTGTTTTGTTAGGAACAACAACAACAACAACAACAACGTGCGGAAAGAGATATCGGAAAGGTAAAAACCATCTACTGTGATTTTACCTTCAGCTGAGCGGTTGC
**************************************************......(((((((....)))))))((((((.........))))))((.(((((.((((.((.((((....((((.....))))...................(((((...))))))))).)).))))))))).))................************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 SRR060673
9_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 V116
male body
........................................................................................................................................................TTGTTAGTAACAGCAGCAACAACAA.......................................................................... 25 3 4 1.50 6 6 0 0 0 0 0 0 0 0
........................................................................................................................................TGATGTTTGGTATGTTTTGT............................................................................................... 20 2 8 0.13 1 0 1 0 0 0 0 0 0 0
...........................AAATTGGTAGGCATTAAA.............................................................................................................................................................................................................. 18 2 9 0.11 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................CAACAACAACAACAACATGCGGA............................................................ 23 1 12 0.08 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................TGCTTCGTTAGGGACAACA.................................................................................... 19 3 18 0.06 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................TTGGAAAGGTAAATACTATC................................ 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0
......................................................................................................................................AGTGCTGTTAGGTGTGTTTG................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1
........................................................................................................................GGATTGGTGATGCTAGTG................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................GAGATATCGCCAAGATAA........................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:17113833-17114083 - dvi_7411 AAACAA--ATTTGCAT----AAATA-ATTTGTAATTTAAT-----CAA-----CCGTAATT---------------------------------TGAAATGCATAATTTTGTTGACTAACAAAACGCCCAACGA----------------C--------CAAATGGGCGG----------CC----ACAACGAAC-ATC--------------ACCGACCC-A----------------------------ACGTATACACTACGATCACCA------------------------------------------------CAAA-C---------CACACAAAACAATCCTTGTTG-----TTGTTGTTG----TTGTTGTTGCA--CGCC-TT--TCTCT----A-TAGCCTTTCCATTTTTGGTAGATGACAC---TAAAATGGAAGTCGAC---TCGCCAACG
droMoj3 scaffold_6496:10885196-10885452 + AAATTCAATTTTGCCA----AAATG-ATTTGTAATTTAAC-----CAA-----CTGTAATT---------------------------------TGAATTGCATAATTTT---GACTAACAAA--AACA-------------------AAA--------ATAATGGGCG----------------AAC--------------CAC---C----A--------ATGAAAATATTTAAAATAAAAAACAACCAACGA----ACCACGATCACCA------------------------------------------------CACA-CAAACACACACACACAAAACA-----T---GTTG--TCGT---TG-TTGTTG---TTGCA--CG-CGAATATCTAT----A-TAGCATTTCCATTTTTGGTAGATGACAC---TAAAATGGAAGTCGAC---TCGCCTGTG
droGri2 scaffold_15245:16645292-16645573 - AATT-------TGCAA----CAATAAATTTGTAATTTAAC--------------TGCTG------------------------TAACTGTAAATTGAATTGCATAATTAT---GACTAACCAA--CCCAAACGACA------------A-A--------ATGGGCGATCG----------CAC----------------------------------------------------------AAAACAACCAACCA----ACCACCACCACCACCACAACAACAAAAACAAAAACAACAACAAAAACAACAACAACAACACAAA-AACACCATCGAAAACAACAAA------T---CTTG--T--T---TGTTGCCTG----TGCA-----CGTTTTTCTCT----A-TAGCCTTTCCATTTTTGGTAGATGACACT---AAAATGGACGTCGAC---TCGCCGCTG
droWil2 scf2_1100000004762:1360669-1360772 - ACAAAA------------------------------------------------CGCAACCGCATAAA----------A----TAG------------------------------------G--C----------------------CAA--------TAACCA-ACAA----------CAA--CAA-------CAAT---ATC---AACAAAATGCCA---------------------------------------------------------------------------------------------------------------TAAACAATTACAAAT-----TGTTG-----TTGTTGTTG----TTGTTGT---------------------------------------------------------------------------------TGTA
dp5 3:12446488-12446686 + AAAAACCAC--TGCAACCCACAACC-ACTTGTAACGTAAT-----GAAA---------------CATCATATAACGATATCTGTAACT-------------------------GATTAACCCC--CA----------------------CA--------AAAATGGAATG----------CA-----C--------------ACC---T----A--------CTGAA------------------------------CCACATCGAATATC--------------------------------------------------GA-------------------------------------------------------------A--TACCGTATCCCTATATCTATTAGCCTTTCCATTTTTGGCAGATGACAATATCAAAATGGACGTAGACCAGTCGCCGCTG
droPer2 scaffold_99:101553-101739 - AACCCA--------------CAACC-ACTTGTAACGTAAT-----GAAA---------------CATCATATAACGATATCTGTAACT-------------------------GATTAACCCC--CA----------------------CA--------AAAATGGAATG----------CA-----C--------------ACC---T----A--------CTGAA------------------------------CCACATCGAATATC--------------------------------------------------GA-------------------------------------------------------------A--TACCGTATCCCTATATCTATTAGCCTTTCCATTTTTGGCAGATGACAATATCAAAATGGACGTAGACCAGTCGCCGCTG
droAna3 scaffold_13266:13067395-13067585 - AAC--------------------------------GTAATATAAAAAA----CCTGTAACCGAATAAC----------A----CAA------------------------------------AAAA----------------------TCGAATCAAAAACCCTGGACTG----------CCATGCACCACCACC-ACCACCGCCACTA--CCACTCACAT-TTGAA------------------------------TCAC-TCGAATC-------------------------------------------------------------------------------------------------------ACTTG----TGCC--CG-CGATTC----T----A-TAGCCTTTCAATTTTTGGTAGATGACAATACGAAAATGGACGTTGAC---TCGCCGGTG
droBip1 scf7180000396730:860165-860366 + GAAC------------------------CTGTAACGTAAT-----ATAAACACCTGTTATTAAAAAAA----------A----AAA------------------------------------AAAA----------------------ACAAA------TAACTGCAATGGACAC-----CACCGCA-----AC-CAAC---ACC---AC----CTCACAT-TCGAA------------------------------TCACTTCGATTACCC------------------------------------------------CGAT---------------------------C---TC--TA---------TGTGTTG----TGAT----CCGCGACTCTAT----A-TAGCCTTTCAATTTTTGGTAGATGACAATACAAAAATGGACGTTGAC---TCGCCTGCC
droKik1 scf7180000302476:1219607-1219748 - ACCCA-------------------------------------------------------------------------------------------------------------------------------------------------A--------ACACTGGACTG----------CAATGCAC-------CACC---AAC---CAC----TCACCT-CTGAC------------------------------CCACATCGACAATCC-------------------------------------------------AA---------------------------------------------------TTG----TGCATTCGCTGTT-TTCTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGAGGTGGAC---ACACCCACT
droFic1 scf7180000454066:828935-829139 + AAACAA--AT----------------TTATGTAACGTAAC-----ACAC-A---CGCAATTAAATAAT----------A----TCA------------------------------------A--A----------------------CAA--------AAACTGGACTG----------CAATGCACCACGAAA-AAA---ACC---AACTCACTGACCCTCTGAA------------------------------CCACATCGAATATCC-------------------------------------------------GAA-------------------------------CC--TA---------TGTGTTG----TGCA--CGCCGTTTCTCTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTTGAC---TCGCCTCTT
droEle1 scf7180000491201:280377-280569 - AAACA-----------------------------------------------CCTGTAATTAAACAAT----------A----TAT------------------------------------A--CA---------TATAAAAAAAAAAAA--------AAACTGGACTGGACTGCACTGCACTGCAC-------CACC---GAC---ACCTCACTGACCC---------------------------------------CATCGAATATTC-------------------------------------------------GAA---------------------------A---CC--TA---------TGTGTTG----TGCA--C-CCGTTTCTCTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---TCGCCACTG
droRho1 scf7180000776809:15866-16036 + ACAAAA-----------------------------------------A----CCTGTAATTAAATAAT----------G----TAA------------------------------------A--T----------------------CAA--------AAACTGGACTG----------CAATGCAC-------CACC---AAC---CACTCACTGACCC---------------------------------------CATCGAATATCC-------------------------------------------------GAA-------------------------------CC--TA---------TGTGTTG----TGCA--C-CCGTTTCTTTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAT---TCGCCAATG
droBia1 scf7180000302291:1574435-1574640 + AAACCA--A--TGCAA----CAATA-TTTTGTCACGTA-T-----AAA----CCTGTAATTAAACAAT----------A----CGA------------------------------------A--A----------------------CCA--------AAACTGGACTC----------CAATGCAC-------CAAC---AAC---CACTCACTGAACC-CTGAA------------------------------CCACTTCGAATATCC-------------------------------------------------GAA-------------------------------CA--CA---------TCCGTTG----TGCA--CACCGTTTCTCTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACAAAAATGGACGTGGAC---TCGCCACTG
droTak1 scf7180000415762:694126-694325 + AAC-AA--AT----------------TTTTGTAACGTAAC-----AAAA-AACCTGTAATATAATGAT----------A----TAA------------------------------------A--A----------------------CCA--------AAACTGGACTG----------CAATGCAC-------AAAC---AAC---CACTCACTGACCC-CTGAA------------------------------CCACATCGAATATCC-------------------------------------------------GAA-------------------------------CA--TA---------TCTGTTG----TGCA--CACCGTTTCTCTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---TCGCCACTG
droEug1 scf7180000409672:4163682-4163865 + AAATAA--A-------------------------------------------CCTGTAATTAAATAAT----------A----TAT------------------------------------AATA----------------------CCA--------AAACTGGACTG----------CAATGCAC-------AATC---AAC---CACTCACTGTCCC-CTGAA------------------------------CCACATCGAATATTC-------------------------------------------------GAA--------------------C------A---CC--TA---------TGTGTTG----TGCA--CACCGTTTCTCTAT----A-AAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTCGAC---TCGCCAATG
dm3 chr2R:8468083-8468280 - AAACAA--AA----------------TTTTGTAACGTAAT-----CAAA-A---TGCTATTAAATAAA----------A----TAA------------------------------------A--A----------------------CCA--------AAACTGGACTG----------CAATGCAC-------CAAC---ACC---CACACACTGACCC-CTGAA------------------------------CTGCATCGAATATCC-------------------------------------------------GAA-------------------------------CA--TA---------TGTGTTG----TGCA--CACCGTTTCTCTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---TCGCCACTG
droSim2 2r:9176963-9177159 - AACCAA--A-----------------TTTTGTAACGTAAT-----CAAA-A---TGCTATTAAATAAA----------A----TAA------------------------------------A--A----------------------CCA--------AAACTGGACTG----------CAATGCAC-------CAAC---ACC---CACACACTGACCC-CTGAA------------------------------CTGCATCGAATATCC-------------------------------------------------GAA-------------------------------CA--TA---------TGTGTTG----TGCA--CACCGTTTCTCTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---TCGCCACTG
droSec2 scaffold_1:6014443-6014639 - AAACAA--A-----------------TTTTTTAACGTAAT-----CAAA-A---TGCTATTAAATAAA----------A----TAA------------------------------------A--A----------------------CCA--------AAACTGGACTG----------CAATGCAC-------CAAC---ACC---CACACACTGACCC-TTGAA------------------------------CTGCATCGAATATCC-------------------------------------------------GAA-------------------------------CA--TA---------TGTGTTG----TGCA--CACCGTTTCTCTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---TCGCCACTG
droYak3 2R:8475953-8476141 + ACA--A--A------------------TTTTTAACGTAAC-----CAAA-A---TGCAATTAAAAAA-------------------------------------------------------A--A----------------------ACA--------AAACTGGACTG----------CAATGCAC-------CAAC---ACC---TACACACTGACCC-CTGAA------------------------------CTGCATCGAATATCC-------------------------------------------------GAA-------------------------------CA--TA---------TGTGTTG----TGCA--CACCGTTTCTCTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---TCGCCACTG
droEre2 scaffold_4845:17331199-17331396 + AAACAA--AA----------------TTTTGTAACGTAAC-----CAAA-A---TGCAATTAAATAAA----------A----CAC------------------------------------A--A----------------------CCA--------AAACTGGACTG----------CAATGCAC-------CAAC---ACC---CACACACTGACCC-TTGAA------------------------------CTGCATCGAATATGC-------------------------------------------------GAA-------------------------------CA--TA---------TGTGTTG----TGCA--CACCGTTTCTCTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACAAAAATGGACGTGGAC---TCGCCACTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AAACAA--ATTTGCAT----AAATA-ATTTGTAATTTAAT-----CAA-----CCGTAATT---------------------------------TGAAATGCATAATTTTGTTGACTAACAAAACGCCCAACGA----------------C--------CAAATGGGCGG----------CC----ACAACGAAC-ATC--------------ACCGACCC-A----------------------------ACGTATACACTACGATCACCA------------------------------------------------CAAA-C---------CACACAAAACAATCCTTGTTG-----TTGTTGTTG----TTGTTGTTGCA--CGCC-TT--TCTCT----A-TAGCCTTTCCATTTTTGGTAGATGACAC---TAAAATGGAAGTCGAC---TCGCCAACGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACAC---TAAAATGGAAGT................2113.003000000000010010000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAC---TAAAATGGAAGTCGA.............1911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGATGACAC---TAAAATGGAAGTC...............2511.001000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAC---TAAAATGGAAGTCGAC---TC.......2611.001000000000000000000000000000000000000100000000000000000000000000
.............................................CAA-----CCGTAATT---------------------------------TGAAATGCATA.........................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................C---TAAAATGGAAGTCGAC---T........1811.001000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGATGACAC---TAAAATGGAAGT................2411.001000000000000010000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTAGATGACAC---TAAAAT......................2111.001000000001000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAAGTCGAC---TCG......1811.001000000001000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACAC---TAAAATGGAAGTCGAC---T........2611.001000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---TAAAATGGAAGTCGAC---T........1911.001000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACAC---TAAAATGGA...................1811.001000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGATGACAC---TAAAATGGAAGTCGA.............2711.001000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGGTAGATGACAC---TAAA........................2211.001000000000000000000000000000000000001000000000000000000000000000
droMoj3
AAATTCAATTTTGCCA----AAATG-ATTTGTAATTTAAC-----CAA-----CTGTAATT---------------------------------TGAATTGCATAATTTT---GACTAACAAA--AACA-------------------AAA--------ATAATGGGCG----------------AAC--------------CAC---C----A--------ATGAAAATATTTAAAATAAAAAACAACCAACGA----ACCACGATCACCA------------------------------------------------CACA-CAAACACACACACACAAAACA-----T---GTTG--TCGT---TG-TTGTTG---TTGCA--CG-CGAATATCTAT----A-TAGCATTTCCATTTTTGGTAGATGACAC---TAAAATGGAAGTCGAC---TCGCCTGTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................................................................................................................ACAAAACA-----T---GTTG--TCGT---TG-TTGT...........................................................................................2311.001000010
..................................................................................................................................................................................................................................................................................................................................................ACAAAACA-----T---GTTG--TCGT---TG-TTGTTG---......................................................................................2511.001000010
droGri2
AATT-------TGCAA----CAATAAATTTGTAATTTAAC--------------TGCTG------------------------TAACTGTAAATTGAATTGCATAATTAT---GACTAACCAA--CCCAAACGACA------------A-A--------ATGGGCGATCG----------CAC----------------------------------------------------------AAAACAACCAACCA----ACCACCACCACCACCACAACAACAAAAACAAAAACAACAACAAAAACAACAACAACAACACAAA-AACACCATCGAAAACAACAAA------T---CTTG--T--T---TGTTGCCTG----TGCA-----CGTTTTTCTCT----A-TAGCCTTTCCATTTTTGGTAGATGACACT---AAAATGGACGTCGAC---TCGCCGCTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GACACT---AAAATGGACGTCGAC---T........2211.00110
..............................................................................................TGAATTGCATAATTAT---GACT.............................................................................................................................................................................................................................................................................................................................................................2011.00110
droWil2
ACAAAA------------------------------------------------CGCAACCGCATAAA----------A----TAG------------------------------------G--C----------------------CAA--------TAACCA-ACAA----------CAA--CAA-------CAAT---ATC---AACAAAATGCCA---------------------------------------------------------------------------------------------------------------TAAACAATTACAAAT-----TGTTG-----TTGTTGTTG----TTGTTGT---------------------------------------------------------------------------------TGTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................A-ACAA----------CAA--CAA-------CAAT---ATC---AACAA.............................................................................................................................................................................................................................................................2350.20101000
dp5
AAAAACCAC--TGCAACCCACAACC-ACTTGTAACGTAAT-----GAAA---------------CATCATATAACGATATCTGTAACT-------------------------GATTAACCCC--CA----------------------CA--------AAAATGGAATG----------CA-----C--------------ACC---T----A--------CTGAA------------------------------CCACATCGAATATC--------------------------------------------------GA-------------------------------------------------------------A--TACCGTATCCCTATATCTATTAGCCTTTCCATTTTTGGCAGATGACAATATCAAAATGGACGTAGACCAGTCGCCGCTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACGTAGACCAGTCGCC....2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGTAGACCAGTCGCCGCT.2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATGACAATATCAAAATGGACGTAG..............2711.0010000000010
droPer2
AACCCA--------------CAACC-ACTTGTAACGTAAT-----GAAA---------------CATCATATAACGATATCTGTAACT-------------------------GATTAACCCC--CA----------------------CA--------AAAATGGAATG----------CA-----C--------------ACC---T----A--------CTGAA------------------------------CCACATCGAATATC--------------------------------------------------GA-------------------------------------------------------------A--TACCGTATCCCTATATCTATTAGCCTTTCCATTTTTGGCAGATGACAATATCAAAATGGACGTAGACCAGTCGCCGCTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AAC--------------------------------GTAATATAAAAAA----CCTGTAACCGAATAAC----------A----CAA------------------------------------AAAA----------------------TCGAATCAAAAACCCTGGACTG----------CCATGCACCACCACC-ACCACCGCCACTA--CCACTCACAT-TTGAA------------------------------TCAC-TCGAATC-------------------------------------------------------------------------------------------------------ACTTG----TGCC--CG-CGATTC----T----A-TAGCCTTTCAATTTTTGGTAGATGACAATACGAAAATGGACGTTGAC---TCGCCGGTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATACGAAAATGGACGT................2014.004010030
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAAATGGACGTTGAC---T........1911.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAATACGAAAATGGACGT................2311.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGACGTTGAC---TCGCCGG..2111.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACAATACGAAAATGGACGT................2211.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAAAATGGACGTTGAC---TC.......2111.001000010
droBip1
GAAC------------------------CTGTAACGTAAT-----ATAAACACCTGTTATTAAAAAAA----------A----AAA------------------------------------AAAA----------------------ACAAA------TAACTGCAATGGACAC-----CACCGCA-----AC-CAAC---ACC---AC----CTCACAT-TCGAA------------------------------TCACTTCGATTACCC------------------------------------------------CGAT---------------------------C---TC--TA---------TGTGTTG----TGAT----CCGCGACTCTAT----A-TAGCCTTTCAATTTTTGGTAGATGACAATACAAAAATGGACGTTGAC---TCGCCTGCCSizeHit CountTotal NormTotal
No Reads
droKik1
ACCCA-------------------------------------------------------------------------------------------------------------------------------------------------A--------ACACTGGACTG----------CAATGCAC-------CACC---AAC---CAC----TCACCT-CTGAC------------------------------CCACATCGACAATCC-------------------------------------------------AA---------------------------------------------------TTG----TGCATTCGCTGTT-TTCTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGAGGTGGAC---ACACCCACTSizeHit CountTotal NormTotal
No Reads
droFic1
AAACAA--AT----------------TTATGTAACGTAAC-----ACAC-A---CGCAATTAAATAAT----------A----TCA------------------------------------A--A----------------------CAA--------AAACTGGACTG----------CAATGCACCACGAAA-AAA---ACC---AACTCACTGACCCTCTGAA------------------------------CCACATCGAATATCC-------------------------------------------------GAA-------------------------------CC--TA---------TGTGTTG----TGCA--CGCCGTTTCTCTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTTGAC---TCGCCTCTTSizeHit CountTotal NormTotal
No Reads
droEle1
AAACA-----------------------------------------------CCTGTAATTAAACAAT----------A----TAT------------------------------------A--CA---------TATAAAAAAAAAAAA--------AAACTGGACTGGACTGCACTGCACTGCAC-------CACC---GAC---ACCTCACTGACCC---------------------------------------CATCGAATATTC-------------------------------------------------GAA---------------------------A---CC--TA---------TGTGTTG----TGCA--C-CCGTTTCTCTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---TCGCCACTGSizeHit CountTotal NormTotal
No Reads
droRho1
ACAAAA-----------------------------------------A----CCTGTAATTAAATAAT----------G----TAA------------------------------------A--T----------------------CAA--------AAACTGGACTG----------CAATGCAC-------CACC---AAC---CACTCACTGACCC---------------------------------------CATCGAATATCC-------------------------------------------------GAA-------------------------------CC--TA---------TGTGTTG----TGCA--C-CCGTTTCTTTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAT---TCGCCAATGSizeHit CountTotal NormTotal
No Reads
droBia1
AAACCA--A--TGCAA----CAATA-TTTTGTCACGTA-T-----AAA----CCTGTAATTAAACAAT----------A----CGA------------------------------------A--A----------------------CCA--------AAACTGGACTC----------CAATGCAC-------CAAC---AAC---CACTCACTGAACC-CTGAA------------------------------CCACTTCGAATATCC-------------------------------------------------GAA-------------------------------CA--CA---------TCCGTTG----TGCA--CACCGTTTCTCTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACAAAAATGGACGTGGAC---TCGCCACTGSizeHit CountTotal NormTotal
No Reads
droTak1
AAC-AA--AT----------------TTTTGTAACGTAAC-----AAAA-AACCTGTAATATAATGAT----------A----TAA------------------------------------A--A----------------------CCA--------AAACTGGACTG----------CAATGCAC-------AAAC---AAC---CACTCACTGACCC-CTGAA------------------------------CCACATCGAATATCC-------------------------------------------------GAA-------------------------------CA--TA---------TCTGTTG----TGCA--CACCGTTTCTCTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---TCGCCACTGSizeHit CountTotal NormTotal
No Reads
droEug1
AAATAA--A-------------------------------------------CCTGTAATTAAATAAT----------A----TAT------------------------------------AATA----------------------CCA--------AAACTGGACTG----------CAATGCAC-------AATC---AAC---CACTCACTGTCCC-CTGAA------------------------------CCACATCGAATATTC-------------------------------------------------GAA--------------------C------A---CC--TA---------TGTGTTG----TGCA--CACCGTTTCTCTAT----A-AAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTCGAC---TCGCCAATGSizeHit CountTotal NormTotal
No Reads
dm3
AAACAA--AA----------------TTTTGTAACGTAAT-----CAAA-A---TGCTATTAAATAAA----------A----TAA------------------------------------A--A----------------------CCA--------AAACTGGACTG----------CAATGCAC-------CAAC---ACC---CACACACTGACCC-CTGAA------------------------------CTGCATCGAATATCC-------------------------------------------------GAA-------------------------------CA--TA---------TGTGTTG----TGCA--CACCGTTTCTCTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---TCGCCACTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGGACGTGGAC---TCGCCACT.24115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005220600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGACGTGGAC---TCGCCACT.2319.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005020200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAGATGACAATACGAAAATGGACGT................2816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCATTTTTGGTAGAT....................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTAGATGACAATACGAA.........................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000200000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGACGTGGAC---TCGCCACT.2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGGACGTGGAC---TCGCT....2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGGACGTGGAC---TCGCC....2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGAAAATGGACGTGGAC---TCGCC....2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGAAAATGGACGTGGAC---T........2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATACGAAAATGGACGTGGAC---T........2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGAAAATGGACGTGGAC---TCGC.....2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAAAATGGACGTGGAC---TCGCCACT.2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGGACGTGGAC---TCG......1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATACGAAAATGGACGTGGAC---TC.......2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TTG----TGCA--CACCGTTTCTCTAT----A-TAG........................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAATACGAAAATGGACGT................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCATTTTTGGTAGATGA..................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AT----A-TAGCCTTTCCATTTTTG..........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGACGTGGAC---TCGCC....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGACGTGGAC---TCGCCACTG2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................ATATCC-------------------------------------------------GAA-------------------------------CA--TA---------TGTGTTG----T....................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAATACGAAAATGGACGTGGAC---ATC......2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGACGTGGAC---TCGCCACT.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACGAAAATGGACGTGGAC---T........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TTCCATTTTTGGTAGATGACAATACGA..........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................ATCGAATATCC-------------------------------------------------GAA-------------------------------CA--TA---------TGTGT...........................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGGTAGATGACAATAC............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAATACGAAAATGGACGTGGAC---TC.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................ATCGAATATCC-------------------------------------------------GAA-------------------------------CA--TA---------TGTGTT..........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAAATGGACGTGGAC---TCGC.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAATACGAAAATGGACGTGGAC---.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGACGTGGAC---TCGCCAC..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGACGTGGAC---TCGCCACTG2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TGTTG----TGCA--CACCGTTTCTCTAT----A-...........................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TCCATTTTTGGTAGATGACAATACGAAAA.......................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TAA------------------------------------A--A----------------------CCA--------AAACTGGACTG----------CA............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGAAAATGGACGTGGAC---TCGCCACT.2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAAATGGACGTGGAC---T........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................CACCGTTTCTCTAT----A-TAGCCT.....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................TGAA------------------------------CTGCATCGAATATCC-------------------------------------------------G................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGACGTGGAC---TCGCCA...1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAATACGAAAATGGACGTGGAC---T........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................TGTGTTG----TGCA--CACCGTTTCTCTAT----A-T..........................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TTCCATTTTTGGTAGATGACAATACGT..........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................GAATATCC-------------------------------------------------GAA-------------------------------CA--TA---------TGTGTT..........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACGAAAATGGACGTGGAC---T........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAGATGACAATACGAAAATGGAC..................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATACGAAAATGGACGTGGAC---.........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................ACTGGACTG----------CAATGCAC-------CAA............................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAAAATGGACGTGGAC---TCGCC....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................CACCGTTTCTCTAT----A-TAGCCTTTCCAT...............................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGACGTGGAC---TCGCC....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AACCAA--A-----------------TTTTGTAACGTAAT-----CAAA-A---TGCTATTAAATAAA----------A----TAA------------------------------------A--A----------------------CCA--------AAACTGGACTG----------CAATGCAC-------CAAC---ACC---CACACACTGACCC-CTGAA------------------------------CTGCATCGAATATCC-------------------------------------------------GAA-------------------------------CA--TA---------TGTGTTG----TGCA--CACCGTTTCTCTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---TCGCCACTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................ACTGGACTG----------CAATGCAC-------C..............................................................................................................................................................................................................................................................................1812.00200200000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAAATGGACGTGGAC---TCG......2011.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAAATGGACGTGGAC---TCGCC....2311.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTAGATGACAATACG...........................1911.00101000000000000000
.........................................................TATTAAATAAA----------A----TAA------------------------------------A--A----------------------C.............................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCATTTTTGGTAGATGACAATA.............................2511.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAAAATGGACGTGGAC---TCGCCACT.2711.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGAAAATGGACGTGGAC---TCGCCACT.2811.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGGACGTGGAC---TC.......1811.00100001000000000000
...................................................................A----------A----TAA------------------------------------A--A----------------------CCA--------AAACTGGACC.........................................................................................................................................................................................................................................................................................................2011.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCATTTTTGGTA.......................................1580.13100000010000000000
droSec2
AAACAA--A-----------------TTTTTTAACGTAAT-----CAAA-A---TGCTATTAAATAAA----------A----TAA------------------------------------A--A----------------------CCA--------AAACTGGACTG----------CAATGCAC-------CAAC---ACC---CACACACTGACCC-TTGAA------------------------------CTGCATCGAATATCC-------------------------------------------------GAA-------------------------------CA--TA---------TGTGTTG----TGCA--CACCGTTTCTCTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---TCGCCACTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGTAGATGACAATACGAAA........................2311.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGACGTGGAC---TCGT.....1920.5010100
droYak3
ACA--A--A------------------TTTTTAACGTAAC-----CAAA-A---TGCAATTAAAAAA-------------------------------------------------------A--A----------------------ACA--------AAACTGGACTG----------CAATGCAC-------CAAC---ACC---TACACACTGACCC-CTGAA------------------------------CTGCATCGAATATCC-------------------------------------------------GAA-------------------------------CA--TA---------TGTGTTG----TGCA--CACCGTTTCTCTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACGAAAATGGACGTGGAC---TCGCCACTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAAATGGACGTGGAC---TCGCCT...2411.00100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGACGTGGAC---TCGCC....2011.00101000000000
.....................................................................................................................................................................................................................................................................ATCGAATATCC-------------------------------------------------GAA-------------------------------CA--TA---------TGTGT...........................................................................................2311.00100000010000
droEre2
AAACAA--AA----------------TTTTGTAACGTAAC-----CAAA-A---TGCAATTAAATAAA----------A----CAC------------------------------------A--A----------------------CCA--------AAACTGGACTG----------CAATGCAC-------CAAC---ACC---CACACACTGACCC-TTGAA------------------------------CTGCATCGAATATGC-------------------------------------------------GAA-------------------------------CA--TA---------TGTGTTG----TGCA--CACCGTTTCTCTAT----A-TAGCCTTTCCATTTTTGGTAGATGACAATACAAAAATGGACGTGGAC---TCGCCACTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................GTTG----TGCA--CACCGTTTCTCTAT----A-TAG........................................................2611.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTAGATGACAATACAAAA........................2111.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATACAAAAATGGACGTGGA.............2211.0010100000
............................................................................................................................................................................................................................................................................ATGC-------------------------------------------------GAA-------------------------------CA--TA---------TGTGTTG----T....................................................................................1911.0010001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAAAATGGACGTGGAC---TCGCCACT.2711.0011000000

Generated: 05/17/2015 at 04:10 AM